Query 030285
Match_columns 180
No_of_seqs 167 out of 317
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 18:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nee_A EIF-2-beta, probable tr 99.8 7.4E-22 2.5E-26 156.5 -3.9 61 115-180 4-64 (138)
2 2d74_B Translation initiation 99.8 5.7E-21 2E-25 153.0 0.7 61 115-180 5-66 (148)
3 3cw2_K Translation initiation 99.8 3.1E-21 1.1E-25 153.0 -3.9 61 115-180 4-64 (139)
4 2e9h_A EIF-5, eukaryotic trans 99.4 2E-14 6.8E-19 116.1 0.6 51 126-180 10-63 (157)
5 1k8b_A EIF-2-beta, probable tr 99.3 9.9E-13 3.4E-17 88.9 1.7 31 149-180 1-31 (52)
6 3o27_A Putative uncharacterize 15.2 75 0.0026 22.2 1.8 34 141-174 6-41 (68)
7 2lqo_A Putative glutaredoxin R 13.4 78 0.0027 21.9 1.5 23 147-172 56-81 (92)
8 2jns_A Bromodomain-containing 13.3 74 0.0025 22.4 1.4 18 120-137 36-53 (90)
9 1s3a_A NADH-ubiquinone oxidore 13.0 1.4E+02 0.0046 21.2 2.8 51 108-160 28-81 (102)
10 2eki_A DRG 1, developmentally- 12.7 1.1E+02 0.0039 22.1 2.2 27 144-176 24-51 (93)
No 1
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=99.80 E-value=7.4e-22 Score=156.46 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 115 ~y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
+|+|++||+|||++| |+..++..||.||+|||.++|+| |+|.||.+||++|||+|+||+.|
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~ky 64 (138)
T 1nee_A 4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQGNR-TFIQNFREVADALNRDPQHLLKF 64 (138)
T ss_dssp CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEETTE-EEESCHHHHHHHHCSSHHHHHHH
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECCc-EEEEcHHHHHHHHCCCHHHHHHH
Confidence 689999999999999 66556778999999999999976 99999999999999999999764
No 2
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=99.79 E-value=5.7e-21 Score=153.01 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHHHHHhcCCCCc-ccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 115 ~y~YeeLL~R~f~~L~~~NPd~a-~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
.|+|++||+|||++| |+.+ ++..||.||+|||.++| +||+|.||.+||++|||+|+||+.|
T Consensus 5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eG-kKTvi~Nf~dIa~~L~R~p~hv~ky 66 (148)
T 2d74_B 5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEG-NKTIIENFKDIADALNRDPQHLLKF 66 (148)
T ss_dssp TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEET-TEEEESCHHHHHHHHTCCSHHHHHH
T ss_pred cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEec-CeEEEEcHHHHHHHHCCCHHHHHHH
Confidence 578999999999999 9987 77889999999999999 5699999999999999999999764
No 3
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=99.78 E-value=3.1e-21 Score=153.05 Aligned_cols=61 Identities=23% Similarity=0.409 Sum_probs=55.5
Q ss_pred cchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 115 ~y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
+|+|++||+|||++| |+..+...||.||+|||.++|+| |+|.||.+||++|||+|+||+.|
T Consensus 4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~kmp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~ky 64 (139)
T 3cw2_K 4 EKEYVEMLDRLYSKL----PEKGRKEGTQSLPNMIILNIGNT-TIIRNFAEYCDRIRREDKICMKY 64 (139)
T ss_dssp SGGGHHHHTTTTTSS----TTSSSCSSCCSCCCCCCCCCSSS-CCCSCSSSTTTTTSSCCTTTHHH
T ss_pred ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECCe-EEEEcHHHHHHHHCCCHHHHHHH
Confidence 689999999999999 55446778999999999999986 99999999999999999999754
No 4
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2e-14 Score=116.15 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHhcCCCCcccccceecCCCeEEEeCC---ceeEeechHHHHHHhCCccchhccC
Q 030285 126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 126 f~~L~~~NPd~a~~~~Rf~ippPqV~reG~---KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
++++|++||.+. ||.||+|||.++|+ +||+|+||.+||++|||+|+||+.|
T Consensus 10 ~nI~r~~~d~~~----RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky 63 (157)
T 2e9h_A 10 VNVNRSVSDQFY----RYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKY 63 (157)
T ss_dssp EESSTTCCCSCC----CCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHH
T ss_pred EeccCCCCCccc----ceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHH
Confidence 567777777765 89999999999998 6899999999999999999999764
No 5
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=99.26 E-value=9.9e-13 Score=88.89 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=28.8
Q ss_pred eEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 149 QVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 149 qV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
+|+|+|+| |+|.||.+||++|||+|+||+.|
T Consensus 1 ~v~~eG~k-Tvi~Nf~~Ia~~L~R~p~hv~ky 31 (52)
T 1k8b_A 1 EILIEGNR-TIIRNFRELAKAVNRDEEFFAKY 31 (52)
T ss_dssp CEEEETTE-EEECCHHHHHHHHHTCHHHHHHH
T ss_pred CcEEEcCe-EEEECHHHHHHHHCCCHHHHHHH
Confidence 68999987 99999999999999999999754
No 6
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=15.21 E-value=75 Score=22.16 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=23.6
Q ss_pred cceecCCCeEEEeCC-ceeEeech-HHHHHHhCCcc
Q 030285 141 RRTVMRPPQVLREGT-KKTVFVNF-MDLCKTYVLVL 174 (180)
Q Consensus 141 ~Rf~ippPqV~reG~-KKTif~NF-~eIck~LnRdp 174 (180)
+.+++-.|.+.+-|+ ..|...|| .+|+++|.=.+
T Consensus 6 ~~~~~~kp~~~kgg~g~etyYInIPaeI~kaLgIk~ 41 (68)
T 3o27_A 6 RKLVVLNPRAYKGGSGHTTFYLLIPKDIAEALDIKP 41 (68)
T ss_dssp CCCCEECCEEC-----CCCEEEEECHHHHHHTTCCT
T ss_pred eEEEEEeeeeeeCCCCceEEEEeCcHHHHHHhCCCC
Confidence 456677889988887 67999999 78999887544
No 7
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=13.37 E-value=78 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.7
Q ss_pred CCeEEE-eCCceeEeech--HHHHHHhCC
Q 030285 147 PPQVLR-EGTKKTVFVNF--MDLCKTYVL 172 (180)
Q Consensus 147 pPqV~r-eG~KKTif~NF--~eIck~LnR 172 (180)
-|+|+. +| +++.|| .+|..+|.+
T Consensus 56 VP~I~i~Dg---~~l~~~~~~el~~~L~e 81 (92)
T 2lqo_A 56 VPTVKFADG---STLTNPSADEVKAKLVK 81 (92)
T ss_dssp SCEEEETTS---CEEESCCHHHHHHHHHH
T ss_pred eCEEEEeCC---EEEeCCCHHHHHHHHHH
Confidence 378877 56 788997 466666643
No 8
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=13.32 E-value=74 Score=22.35 Aligned_cols=18 Identities=44% Similarity=0.789 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 030285 120 ELLGRVFNILRENNPELA 137 (180)
Q Consensus 120 eLL~R~f~~L~~~NPd~a 137 (180)
+.|.||.+|+++++|.+.
T Consensus 36 e~L~~Vi~II~~~~p~l~ 53 (90)
T 2jns_A 36 EKLGRVVHIIQSREPSLK 53 (90)
T ss_dssp HHHTTHHHHHHTTCGGGT
T ss_pred HHHHHHHHHHHhcCcccc
Confidence 467799999999999975
No 9
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=13.03 E-value=1.4e+02 Score=21.21 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEE---eCCceeEe
Q 030285 108 PWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLR---EGTKKTVF 160 (180)
Q Consensus 108 ~w~~~~~~y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~r---eG~KKTif 160 (180)
+|.++.+.. .+.|.+-|-.++.+||.+.-.-++-.=+.|.|.- .|..++|-
T Consensus 28 ~~~~sS~G~--R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~ek~i~ 81 (102)
T 1s3a_A 28 QRSPGSQGV--RDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVP 81 (102)
T ss_dssp SSSCCCHHH--HHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEE
T ss_pred CCCCCchhH--HHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCCCEEEEE
Confidence 566665443 6777889999999999964322211124555432 35555554
No 10
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=12.66 E-value=1.1e+02 Score=22.14 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=21.3
Q ss_pred ecCCCeEE-EeCCceeEeechHHHHHHhCCccch
Q 030285 144 VMRPPQVL-REGTKKTVFVNFMDLCKTYVLVLCL 176 (180)
Q Consensus 144 ~ippPqV~-reG~KKTif~NF~eIck~LnRdp~h 176 (180)
.++.|-|+ +.|+. -.++|.++||+.-.
T Consensus 24 d~~dpviL~~~GsT------v~Dfa~~IH~di~~ 51 (93)
T 2eki_A 24 DYTSPVVLPYSRTT------VEDFCMKIHKNLIK 51 (93)
T ss_dssp CSSSCEEEETTSCC------HHHHHHHHCTTCTT
T ss_pred CCCCCEEEecCCCC------HHHHHHHHHHHHHh
Confidence 46788999 88854 67899999998643
Done!