Query 030285
Match_columns 180
No_of_seqs 167 out of 317
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 18:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neea1 d.241.1.1 (A:1-98) Tra 99.8 7.5E-22 5.5E-26 146.3 -4.0 60 116-180 2-61 (98)
2 d1k8ba_ d.241.1.1 (A:) Transla 99.3 4.9E-13 3.6E-17 88.7 1.8 31 149-180 1-31 (52)
3 d1utxa_ a.35.1.3 (A:) Putative 24.8 8.3 0.0006 23.5 0.3 27 154-180 37-63 (66)
4 d3brda2 b.2.5.8 (A:197-380) DN 24.0 17 0.0013 27.8 2.1 18 138-155 34-51 (184)
5 d1t1va_ c.47.1.14 (A:) SH3BGRL 17.2 46 0.0033 21.2 2.9 22 146-170 60-81 (93)
6 d1y9qa1 a.35.1.8 (A:4-82) Prob 16.3 28 0.002 21.4 1.5 26 154-179 44-69 (79)
7 d2crga1 a.4.1.3 (A:8-64) Metas 12.8 23 0.0017 21.5 0.2 19 161-179 21-41 (57)
8 d1b0na2 a.35.1.3 (A:1-68) SinR 11.9 33 0.0024 20.5 0.8 35 145-179 26-63 (68)
9 d1h75a_ c.47.1.1 (A:) Glutared 11.1 75 0.0054 19.1 2.5 25 147-174 51-76 (76)
10 d1egoa_ c.47.1.1 (A:) Glutared 10.6 70 0.0051 19.7 2.2 24 146-172 58-81 (85)
No 1
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.78 E-value=7.5e-22 Score=146.31 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHHhcCCCCcccccceecCCCeEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 116 y~YeeLL~R~f~~L~~~NPd~a~~~~Rf~ippPqV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
++|++||+|||+.| |+...+..||.||+|+|.++| +||+|.||.+||++|||+|+||+.|
T Consensus 2 ~~Y~~LL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG-kkTii~Nf~~Ia~~L~R~p~hl~kf 61 (98)
T d1neea1 2 DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLKF 61 (98)
T ss_dssp CSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHHH
T ss_pred ccHHHHHHHHHHHC----CcccCCCcceecCCceEEEec-ceEEEechHHHHHHHCCCHHHHHHH
Confidence 46999999999999 887777789999999999999 5699999999999999999999754
No 2
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.26 E-value=4.9e-13 Score=88.73 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.5
Q ss_pred eEEEeCCceeEeechHHHHHHhCCccchhccC
Q 030285 149 QVLREGTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 149 qV~reG~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
+|+++| +||+|.||.+||++|||+|+||+.|
T Consensus 1 ~v~~EG-kkTvi~Nf~eI~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 1 EILIEG-NRTIIRNFRELAKAVNRDEEFFAKY 31 (52)
T ss_dssp CEEEET-TEEEECCHHHHHHHHHTCHHHHHHH
T ss_pred CceEec-ceEeeecHHHHHHHhCCCHHHHHHH
Confidence 689999 5699999999999999999999864
No 3
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=24.80 E-value=8.3 Score=23.52 Aligned_cols=27 Identities=7% Similarity=0.020 Sum_probs=22.3
Q ss_pred CCceeEeechHHHHHHhCCccchhccC
Q 030285 154 GTKKTVFVNFMDLCKTYVLVLCLLFSF 180 (180)
Q Consensus 154 G~KKTif~NF~eIck~LnRdp~hl~~~ 180 (180)
|...+.+.++..||+.|+=.++.||.+
T Consensus 37 g~~~p~~~~l~~ia~~l~v~~~~lf~~ 63 (66)
T d1utxa_ 37 NKYNPSLQLALKIAYYLNTPLEDIFQW 63 (66)
T ss_dssp TSCCCCHHHHHHHHHHTTSCHHHHEEE
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHcCC
Confidence 445577889999999999999988753
No 4
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=24.02 E-value=17 Score=27.76 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=16.1
Q ss_pred ccccceecCCCeEEEeCC
Q 030285 138 GDRRRTVMRPPQVLREGT 155 (180)
Q Consensus 138 ~~~~Rf~ippPqV~reG~ 155 (180)
|..+||--|||.|...|+
T Consensus 34 G~EKRFfCPPP~vyL~G~ 51 (184)
T d3brda2 34 GNEKRFFCPPPCIYLIGQ 51 (184)
T ss_dssp TTCCCCCSSCCEEEEEST
T ss_pred cccccccCCCCEEEEecC
Confidence 567899999999999995
No 5
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.21 E-value=46 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.0
Q ss_pred CCCeEEEeCCceeEeechHHHHHHh
Q 030285 146 RPPQVLREGTKKTVFVNFMDLCKTY 170 (180)
Q Consensus 146 ppPqV~reG~KKTif~NF~eIck~L 170 (180)
.+|||+..| ..|-+|.+++...
T Consensus 60 t~Pqifv~~---~~iGg~del~~~~ 81 (93)
T d1t1va_ 60 TPPQIVNGN---HYCGDYELFVEAV 81 (93)
T ss_dssp CSCEEEETT---EEEEEHHHHHHHH
T ss_pred eeEEEEECC---EEEecHHHHHHHH
Confidence 369999999 8999999998754
No 6
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=16.34 E-value=28 Score=21.42 Aligned_cols=26 Identities=8% Similarity=0.247 Sum_probs=21.0
Q ss_pred CCceeEeechHHHHHHhCCccchhcc
Q 030285 154 GTKKTVFVNFMDLCKTYVLVLCLLFS 179 (180)
Q Consensus 154 G~KKTif~NF~eIck~LnRdp~hl~~ 179 (180)
|....-+..+..||+.|+-++..|+.
T Consensus 44 g~~~p~~~~l~~ia~~l~v~~~~l~~ 69 (79)
T d1y9qa1 44 GESSPTIATLWKIASGLEASFSAFFA 69 (79)
T ss_dssp TCSCCCHHHHHHHHHHHTCCSGGGGT
T ss_pred CCCCCCHHHHHHHHHHHCCCHHHHhC
Confidence 44446678899999999999998875
No 7
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.75 E-value=23 Score=21.48 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=12.6
Q ss_pred echHHHHHHh--CCccchhcc
Q 030285 161 VNFMDLCKTY--VLVLCLLFS 179 (180)
Q Consensus 161 ~NF~eIck~L--nRdp~hl~~ 179 (180)
.||..|++.| +|.+..|..
T Consensus 21 Kdf~~I~~~~v~~Ks~~~~v~ 41 (57)
T d2crga1 21 KDFNDIRQDFLPWKSLTSIIE 41 (57)
T ss_dssp SCHHHHHHTTCSSSCHHHHHH
T ss_pred ccHHHHHHHHcCCCCHHHHHH
Confidence 3788888754 777766654
No 8
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.87 E-value=33 Score=20.51 Aligned_cols=35 Identities=3% Similarity=-0.019 Sum_probs=24.4
Q ss_pred cCCCeEEEe--CCce-eEeechHHHHHHhCCccchhcc
Q 030285 145 MRPPQVLRE--GTKK-TVFVNFMDLCKTYVLVLCLLFS 179 (180)
Q Consensus 145 ippPqV~re--G~KK-Tif~NF~eIck~LnRdp~hl~~ 179 (180)
|++..|.+. |.++ .-+.++..||+.|+=++..|+.
T Consensus 26 is~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~~ 63 (68)
T d1b0na2 26 VAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD 63 (68)
T ss_dssp CCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC
T ss_pred CCHHHHHHHHcCCCCCCCHHHHHHHHHHHCCcHHHHcC
Confidence 444444433 4333 4588999999999999998875
No 9
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=11.10 E-value=75 Score=19.10 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=18.8
Q ss_pred CCeEEEeCCceeEeech-HHHHHHhCCcc
Q 030285 147 PPQVLREGTKKTVFVNF-MDLCKTYVLVL 174 (180)
Q Consensus 147 pPqV~reG~KKTif~NF-~eIck~LnRdp 174 (180)
-|+|+..| .+|..| .+.-+.|+..|
T Consensus 51 vP~i~i~~---~~i~Gf~~d~i~~L~~a~ 76 (76)
T d1h75a_ 51 LPVVIAGD---LSWSGFRPDMINRLHPAP 76 (76)
T ss_dssp SCEEEETT---EEEESCCHHHHGGGSCCC
T ss_pred CCEEEECC---EEEECCCHHHHHHHhcCC
Confidence 48999888 788899 46667777654
No 10
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=10.63 E-value=70 Score=19.67 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.0
Q ss_pred CCCeEEEeCCceeEeechHHHHHHhCC
Q 030285 146 RPPQVLREGTKKTVFVNFMDLCKTYVL 172 (180)
Q Consensus 146 ppPqV~reG~KKTif~NF~eIck~LnR 172 (180)
.-|||+..| ..|-.|.++.+.+..
T Consensus 58 tvPqIfi~g---~~IGG~~el~~~~~~ 81 (85)
T d1egoa_ 58 TVPQIFVDQ---QHIGGYTDFAAWVKE 81 (85)
T ss_dssp CSCEEEETT---EEEESSHHHHHHHHH
T ss_pred CCCEEEECC---EEEECHHHHHHHHHh
Confidence 479999999 688999999887653
Done!