BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030287
MSLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFI
HIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHH
LLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPEYQLQ

High Scoring Gene Products

Symbol, full name Information P value
AT2G47830 protein from Arabidopsis thaliana 2.6e-40
CBU_1362
cation-efflux family protein 		protein from Coxiella burnetii RSA 493 2.0e-07
GSU_2613
cation efflux family protein 		protein from Geobacter sulfurreducens PCA 7.2e-05
fieF
Cation diffusion facilitator family transporter FieF 		protein from Pseudomonas protegens Pf-5 0.00076

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030287
        (180 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2043328 - symbol:AT2G47830 species:3702 "Arabi...   429  2.6e-40   1
TIGR_CMR|CBU_1362 - symbol:CBU_1362 "cation-efflux family...   126  2.0e-07   1
TIGR_CMR|GSU_2613 - symbol:GSU_2613 "cation efflux family...   111  7.2e-05   1
UNIPROTKB|Q4K5J6 - symbol:fieF "Cation diffusion facilita...   104  0.00076   1


>TAIR|locus:2043328 [details] [associations]
            symbol:AT2G47830 species:3702 "Arabidopsis thaliana"
            [GO:0006812 "cation transport" evidence=IEA;ISS] [GO:0008324
            "cation transmembrane transporter activity" evidence=IEA;ISS]
            [GO:0015562 "efflux transmembrane transporter activity"
            evidence=ISS] [GO:0016020 "membrane" evidence=ISS] [GO:0016021
            "integral to membrane" evidence=IEA] [GO:0055085 "transmembrane
            transport" evidence=IEA] InterPro:IPR002524 Pfam:PF01545
            GO:GO:0016021 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
            EMBL:AC005309 PANTHER:PTHR11562 TIGRFAMs:TIGR01297 GO:GO:0008324
            eggNOG:COG0053 EMBL:AY139998 EMBL:BT006611 IPI:IPI00537601
            IPI:IPI00542773 PIR:A84920 RefSeq:NP_182304.2 RefSeq:NP_850480.1
            UniGene:At.43449 ProteinModelPortal:Q8L725 SMR:Q8L725
            EnsemblPlants:AT2G47830.1 GeneID:819395 KEGG:ath:AT2G47830
            GeneFarm:5024 TAIR:At2g47830 HOGENOM:HOG000030754 InParanoid:Q8L725
            OMA:EVFIHID PhylomeDB:Q8L725 ProtClustDB:CLSN2680304
            Genevestigator:Q8L725 GermOnline:AT2G47830 Uniprot:Q8L725
        Length = 471

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 90/166 (54%), Positives = 112/166 (67%)

Query:     5 LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             ++GCHRLRGRRAGSSLYLDVHIVVDPFSSVS AH VGE VR QI+ +HPEVSEVFIHIDP
Sbjct:   307 VKGCHRLRGRRAGSSLYLDVHIVVDPFSSVSVAHEVGEYVRRQINLNHPEVSEVFIHIDP 366

Query:    65 AYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG 124
             A+ QFS ST D   +       SNIC +   ++A V +  S++  EK+ ++RIT HLLH 
Sbjct:   367 AFLQFSCSTKDHDSI----TKESNICQEIKHVEATVSDIFSSQLSEKLTIKRITPHLLHS 422

Query:   125 KILLEVEVSMSPDTSIRDXXXXXXXXXXXXXXXXPNVFQVSVKLRL 170
             KILL++ V+M    SI+D                PNV +VS++L L
Sbjct:   423 KILLQIVVAMPSTMSIQDVMIAAEHAEKEILKAAPNVARVSIQLSL 468


>TIGR_CMR|CBU_1362 [details] [associations]
            symbol:CBU_1362 "cation-efflux family protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0006812 "cation
            transport" evidence=ISS] [GO:0008324 "cation transmembrane
            transporter activity" evidence=ISS] [GO:0015562 "efflux
            transmembrane transporter activity" evidence=ISS]
            InterPro:IPR002524 Pfam:PF01545 GO:GO:0016021 EMBL:AE016828
            GenomeReviews:AE016828_GR PANTHER:PTHR11562 TIGRFAMs:TIGR01297
            GO:GO:0008324 HOGENOM:HOG000062182 OMA:GVHSISD RefSeq:NP_820351.1
            ProteinModelPortal:Q83BX5 GeneID:1209268 KEGG:cbu:CBU_1362
            PATRIC:17931467 ProtClustDB:CLSK914730
            BioCyc:CBUR227377:GJ7S-1352-MONOMER Uniprot:Q83BX5
        Length = 378

 Score = 126 (49.4 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H+LR R  G ++++DVHI V P  SVS  H VGE V   + KS   V++V +HIDP
Sbjct:   237 HQLRTRYHGGNIFVDVHIQVAPDISVSEGHYVGEQVHLTLLKSVEHVADVTVHIDP 292


>TIGR_CMR|GSU_2613 [details] [associations]
            symbol:GSU_2613 "cation efflux family protein"
            species:243231 "Geobacter sulfurreducens PCA" [GO:0006812 "cation
            transport" evidence=ISS] [GO:0008324 "cation transmembrane
            transporter activity" evidence=ISS] [GO:0015562 "efflux
            transmembrane transporter activity" evidence=ISS]
            InterPro:IPR002524 Pfam:PF01545 GO:GO:0016021 EMBL:AE017180
            GenomeReviews:AE017180_GR PANTHER:PTHR11562 TIGRFAMs:TIGR01297
            GO:GO:0008324 RefSeq:NP_953658.1 ProteinModelPortal:Q749X9
            GeneID:2686282 KEGG:gsu:GSU2613 PATRIC:22028079
            HOGENOM:HOG000062182 OMA:KSSMLVA ProtClustDB:CLSK828907
            BioCyc:GSUL243231:GH27-2601-MONOMER Uniprot:Q749X9
        Length = 296

 Score = 111 (44.1 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 20/56 (35%), Positives = 34/56 (60%)

Query:     9 HRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             H +RGRR+G  + +D+ + +DP  +V  +H +   V+  I +  P V +V IHI+P
Sbjct:   230 HEIRGRRSGQYIIIDLKLDMDPEMTVKQSHDIATCVKKLIFERFPNVGDVMIHINP 285


>UNIPROTKB|Q4K5J6 [details] [associations]
            symbol:fieF "Cation diffusion facilitator family
            transporter FieF" species:220664 "Pseudomonas protegens Pf-5"
            [GO:0005506 "iron ion binding" evidence=ISS] [GO:0006826 "iron ion
            transport" evidence=ISS] [GO:0008324 "cation transmembrane
            transporter activity" evidence=ISS] [GO:0016021 "integral to
            membrane" evidence=ISS] InterPro:IPR002524 Pfam:PF01545
            GO:GO:0016021 GO:GO:0005506 EMBL:CP000076 GenomeReviews:CP000076_GR
            GO:GO:0006826 PANTHER:PTHR11562 TIGRFAMs:TIGR01297 GO:GO:0008324
            eggNOG:COG0053 HOGENOM:HOG000069673 OMA:IVIISIN RefSeq:YP_262487.1
            ProteinModelPortal:Q4K5J6 STRING:Q4K5J6 GeneID:3479811
            KEGG:pfl:PFL_5419 PATRIC:19880323 ProtClustDB:CLSK868354
            BioCyc:PFLU220664:GIX8-5455-MONOMER Uniprot:Q4K5J6
        Length = 298

 Score = 104 (41.7 bits), Expect = 0.00076, P = 0.00076
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query:     7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
             G H LR R +GS  ++ +H+ +    ++S AHG+ +     I K++P  +EV +H DP
Sbjct:   232 GAHDLRTRISGSHWFVQLHLELPGELTLSVAHGISDQAADAIQKAYPR-AEVLVHADP 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       164   0.00088  107 3  11 22  0.36    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.62u 0.13s 13.75t   Elapsed:  00:00:01
  Total cpu time:  13.62u 0.13s 13.75t   Elapsed:  00:00:01
  Start:  Fri May 10 18:14:17 2013   End:  Fri May 10 18:14:18 2013

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