Query 030287
Match_columns 180
No_of_seqs 216 out of 1096
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0053 MMT1 Predicted Co/Zn/C 99.5 2.5E-13 5.4E-18 115.6 9.3 70 2-71 227-296 (304)
2 TIGR01297 CDF cation diffusion 99.3 4E-12 8.8E-17 105.3 8.7 64 2-65 204-268 (268)
3 PRK09509 fieF ferrous iron eff 99.3 5.2E-12 1.1E-16 107.0 9.4 65 2-67 225-289 (299)
4 PF01545 Cation_efflux: Cation 99.1 5.5E-10 1.2E-14 93.1 10.2 66 2-67 217-283 (284)
5 PRK03557 zinc transporter ZitB 99.0 1.7E-09 3.7E-14 92.3 9.1 61 2-66 233-293 (312)
6 PRK09509 fieF ferrous iron eff 98.7 2.1E-07 4.5E-12 78.9 11.2 79 96-176 214-292 (299)
7 TIGR01297 CDF cation diffusion 98.6 3.3E-07 7.1E-12 75.9 9.8 66 104-170 201-267 (268)
8 COG0053 MMT1 Predicted Co/Zn/C 98.5 7.6E-07 1.6E-11 76.0 10.8 80 96-176 216-295 (304)
9 PF01545 Cation_efflux: Cation 98.4 6.1E-06 1.3E-10 68.7 11.3 77 95-172 205-282 (284)
10 PRK03557 zinc transporter ZitB 97.9 0.00013 2.9E-09 62.3 10.4 63 105-172 231-293 (312)
11 KOG1485 Mitochondrial Fe2+ tra 97.9 4.7E-05 1E-09 67.0 7.3 65 3-68 339-403 (412)
12 COG1230 CzcD Co/Zn/Cd efflux s 96.6 0.0066 1.4E-07 51.7 7.0 60 2-65 234-294 (296)
13 KOG1482 Zn2+ transporter [Inor 96.1 0.023 4.9E-07 49.7 7.2 64 2-69 306-370 (379)
14 KOG1485 Mitochondrial Fe2+ tra 94.6 0.25 5.4E-06 43.9 8.9 75 94-170 325-399 (412)
15 PF00873 ACR_tran: AcrB/AcrD/A 94.2 2.5 5.5E-05 41.7 15.7 148 21-179 560-718 (1021)
16 PRK09579 multidrug efflux prot 93.5 1.8 3.9E-05 42.8 13.3 143 21-179 557-703 (1017)
17 PF14535 AMP-binding_C_2: AMP- 93.3 1.7 3.7E-05 30.5 9.7 63 2-66 16-80 (96)
18 KOG1483 Zn2+ transporter ZNT1 90.7 0.87 1.9E-05 40.3 6.6 57 2-63 311-368 (404)
19 PRK10555 aminoglycoside/multid 90.5 11 0.00023 37.6 14.7 149 20-179 569-727 (1037)
20 COG3696 Putative silver efflux 90.5 2.5 5.5E-05 41.3 9.9 143 24-180 562-718 (1027)
21 TIGR00915 2A0602 The (Largely 90.1 7.9 0.00017 38.5 13.5 151 19-179 569-728 (1044)
22 PRK09577 multidrug efflux prot 88.8 16 0.00035 36.3 14.6 149 20-179 567-723 (1032)
23 KOG1482 Zn2+ transporter [Inor 88.2 4.1 8.9E-05 35.9 8.9 62 108-173 306-368 (379)
24 PF01883 DUF59: Domain of unkn 88.1 3.9 8.4E-05 26.8 7.0 47 113-166 25-72 (72)
25 TIGR00914 2A0601 heavy metal e 86.0 18 0.0004 36.0 13.1 150 21-179 570-729 (1051)
26 PRK10503 multidrug efflux syst 85.7 22 0.00048 35.5 13.5 146 19-179 567-720 (1040)
27 PRK10614 multidrug efflux syst 84.7 19 0.00042 35.8 12.5 147 19-179 557-706 (1025)
28 PRK15127 multidrug efflux syst 84.6 37 0.0008 34.0 14.5 150 20-179 570-729 (1049)
29 COG1230 CzcD Co/Zn/Cd efflux s 79.5 12 0.00027 32.0 8.0 61 108-172 234-295 (296)
30 COG0841 AcrB Cation/multidrug 75.5 56 0.0012 32.7 12.3 146 19-179 552-705 (1009)
31 PF03780 Asp23: Asp23 family; 72.8 30 0.00064 24.2 9.9 53 116-168 49-104 (108)
32 PF14535 AMP-binding_C_2: AMP- 67.6 38 0.00083 23.4 9.8 76 94-176 7-84 (96)
33 PF03780 Asp23: Asp23 family; 67.5 39 0.00086 23.6 8.5 53 11-63 50-105 (108)
34 PF09580 Spore_YhcN_YlaJ: Spor 65.1 28 0.00062 26.7 6.5 58 4-65 86-143 (177)
35 COG1302 Uncharacterized protei 62.5 41 0.00089 25.4 6.6 52 116-168 56-111 (131)
36 PRK10555 aminoglycoside/multid 61.3 1.8E+02 0.004 29.1 13.2 122 21-167 42-178 (1037)
37 PRK09577 multidrug efflux prot 61.2 1.8E+02 0.004 29.1 13.4 124 21-167 42-177 (1032)
38 PF10934 DUF2634: Protein of u 60.3 46 0.001 24.1 6.4 42 92-134 66-107 (112)
39 PRK10614 multidrug efflux syst 57.2 2.1E+02 0.0046 28.6 13.1 130 21-178 44-186 (1025)
40 TIGR02610 PHA_gran_rgn putativ 56.0 27 0.00058 24.5 4.4 32 22-53 2-33 (91)
41 PF01106 NifU: NifU-like domai 55.5 57 0.0012 21.4 7.7 56 100-165 8-66 (68)
42 TIGR02898 spore_YhcN_YlaJ spor 53.7 90 0.002 24.2 7.4 60 4-65 65-124 (158)
43 TIGR03341 YhgI_GntY IscR-regul 52.0 1E+02 0.0022 24.5 7.7 50 116-166 128-178 (190)
44 PRK09579 multidrug efflux prot 51.5 2.6E+02 0.0057 27.9 13.1 139 21-178 44-185 (1017)
45 PF09650 PHA_gran_rgn: Putativ 50.2 50 0.0011 22.8 5.0 30 24-53 1-30 (87)
46 COG0841 AcrB Cation/multidrug 49.7 2.9E+02 0.0063 27.8 13.6 122 21-167 43-176 (1009)
47 PRK00745 4-oxalocrotonate taut 49.2 63 0.0014 20.1 5.4 44 24-67 4-48 (62)
48 TIGR00915 2A0602 The (Largely 49.0 2.9E+02 0.0063 27.7 13.3 135 21-167 42-178 (1044)
49 PRK10597 DNA damage-inducible 48.3 89 0.0019 21.6 7.9 70 23-106 4-73 (81)
50 PF14480 DNA_pol3_a_NI: DNA po 45.8 83 0.0018 20.5 7.8 52 112-169 24-75 (76)
51 COG3965 Predicted Co/Zn/Cd cat 44.1 73 0.0016 27.1 5.8 51 11-62 253-306 (314)
52 TIGR03221 muco_delta muconolac 43.9 75 0.0016 22.4 5.0 25 20-44 2-26 (90)
53 TIGR02945 SUF_assoc FeS assemb 43.5 1.1E+02 0.0023 21.1 8.2 42 124-169 37-78 (99)
54 cd04864 LigD_Pol_like_1 LigD_P 40.3 92 0.002 25.7 5.8 41 123-163 140-180 (228)
55 PRK15127 multidrug efflux syst 40.0 4E+02 0.0088 26.8 13.3 122 21-167 42-178 (1049)
56 PRK14647 hypothetical protein; 38.4 1.8E+02 0.0039 22.3 9.1 76 93-173 7-82 (159)
57 PF12984 DUF3868: Domain of un 38.0 85 0.0018 22.8 4.8 30 2-31 26-55 (115)
58 TIGR00668 apaH bis(5'-nucleosy 38.0 42 0.00091 28.5 3.6 31 21-51 116-146 (279)
59 PF02426 MIase: Muconolactone 37.8 1.1E+02 0.0023 21.6 5.1 46 20-67 3-48 (91)
60 PF06183 DinI: DinI-like famil 36.9 56 0.0012 21.5 3.3 55 36-106 5-59 (65)
61 PF12327 FtsZ_C: FtsZ family, 36.8 81 0.0018 22.0 4.4 28 23-50 40-67 (95)
62 PRK00092 ribosome maturation p 36.5 1.9E+02 0.0041 21.9 8.7 77 92-173 5-81 (154)
63 TIGR00013 taut 4-oxalocrotonat 36.3 1.1E+02 0.0023 19.0 6.0 45 22-67 3-48 (63)
64 PF03389 MobA_MobL: MobA/MobL 35.9 1.5E+02 0.0033 23.9 6.5 45 18-62 65-109 (216)
65 TIGR00655 PurU formyltetrahydr 33.4 2.7E+02 0.0059 23.4 7.8 44 111-154 209-257 (280)
66 PRK13010 purU formyltetrahydro 33.0 2.9E+02 0.0062 23.4 7.9 45 111-155 218-267 (289)
67 PF03389 MobA_MobL: MobA/MobL 32.9 1.5E+02 0.0032 24.0 5.9 45 124-168 65-109 (216)
68 PF00408 PGM_PMM_IV: Phosphogl 32.9 1.4E+02 0.003 19.4 5.5 34 13-49 40-73 (73)
69 cd04870 ACT_PSP_1 CT domains f 32.7 1.4E+02 0.003 19.3 6.9 50 96-151 12-61 (75)
70 PF01076 Mob_Pre: Plasmid reco 32.7 1.7E+02 0.0036 23.1 6.1 47 18-64 77-129 (196)
71 PF09580 Spore_YhcN_YlaJ: Spor 32.7 2.2E+02 0.0048 21.6 9.3 72 90-169 70-141 (177)
72 PRK11190 Fe/S biogenesis prote 32.6 2.6E+02 0.0056 22.3 7.2 50 116-166 129-180 (192)
73 cd00491 4Oxalocrotonate_Tautom 32.4 1.2E+02 0.0026 18.4 6.2 44 24-67 3-47 (58)
74 PRK02289 4-oxalocrotonate taut 32.1 1.3E+02 0.0028 18.8 6.1 42 24-65 4-46 (60)
75 PF00873 ACR_tran: AcrB/AcrD/A 31.7 1.4E+02 0.0029 29.7 6.5 41 127-168 560-600 (1021)
76 PRK13011 formyltetrahydrofolat 31.4 2.8E+02 0.0061 23.4 7.6 44 111-154 214-262 (286)
77 PRK10503 multidrug efflux syst 31.3 5.6E+02 0.012 25.8 12.9 126 27-167 58-187 (1040)
78 PF04456 DUF503: Protein of un 31.0 1.6E+02 0.0034 20.5 5.0 33 21-53 4-36 (90)
79 smart00796 AHS1 Allophanate hy 30.4 1.4E+02 0.0031 23.8 5.4 52 12-67 2-61 (201)
80 COG0779 Uncharacterized protei 29.2 2.7E+02 0.0058 21.5 8.2 76 93-173 7-82 (153)
81 PRK06027 purU formyltetrahydro 28.8 3.3E+02 0.0071 23.0 7.6 44 111-154 214-262 (286)
82 cd07422 MPP_ApaH Escherichia c 28.6 99 0.0021 25.7 4.3 31 20-50 113-143 (257)
83 COG3518 Predicted component of 27.5 87 0.0019 24.3 3.5 34 141-174 84-117 (157)
84 TIGR03406 FeS_long_SufT probab 27.4 3.1E+02 0.0066 21.5 8.3 55 114-171 100-156 (174)
85 COG3285 Predicted eukaryotic-t 27.2 3.7E+02 0.0079 23.2 7.4 42 121-162 164-205 (299)
86 PRK11589 gcvR glycine cleavage 25.9 3.4E+02 0.0073 21.5 11.2 121 7-151 35-163 (190)
87 TIGR00914 2A0601 heavy metal e 25.9 6.9E+02 0.015 25.1 10.8 131 20-167 45-187 (1051)
88 PF10646 Germane: Sporulation 25.7 2.3E+02 0.0051 19.6 5.6 29 141-169 81-109 (117)
89 COG2098 Uncharacterized protei 23.7 1.6E+02 0.0035 21.6 4.1 34 32-66 34-67 (116)
90 cd01790 Herp_N Homocysteine-re 23.5 2.3E+02 0.0051 19.2 4.7 28 11-39 4-31 (79)
91 COG0299 PurN Folate-dependent 22.8 4.1E+02 0.009 21.5 7.1 43 111-153 128-175 (200)
92 PRK14635 hypothetical protein; 22.8 3.6E+02 0.0078 20.7 8.8 76 91-173 3-82 (162)
93 TIGR02159 PA_CoA_Oxy4 phenylac 22.7 3.5E+02 0.0075 20.5 7.3 50 114-171 17-67 (146)
94 cd02413 40S_S3_KH K homology R 22.2 2E+02 0.0042 19.5 4.1 58 7-66 19-78 (81)
95 PRK01964 4-oxalocrotonate taut 22.1 2.1E+02 0.0046 17.8 5.3 44 24-67 4-48 (64)
96 PRK14641 hypothetical protein; 21.8 3.7E+02 0.008 21.1 6.2 45 6-50 24-68 (173)
97 PF04456 DUF503: Protein of un 21.8 2.8E+02 0.0062 19.2 6.1 74 90-169 17-90 (90)
98 PLN02828 formyltetrahydrofolat 21.7 4.9E+02 0.011 21.9 8.0 45 111-155 196-245 (268)
99 PF11272 DUF3072: Protein of u 21.6 1.2E+02 0.0026 19.6 2.7 22 27-48 34-55 (57)
100 PRK14630 hypothetical protein; 21.4 3.6E+02 0.0079 20.3 8.7 59 93-154 7-65 (143)
101 KOG1484 Putative Zn2+ transpor 20.7 4.3E+02 0.0094 23.3 6.8 59 2-65 288-347 (354)
102 PF13356 DUF4102: Domain of un 20.2 2.8E+02 0.0062 18.6 5.7 28 23-50 49-76 (89)
103 PRK14637 hypothetical protein; 20.1 4E+02 0.0087 20.3 6.2 44 7-50 24-67 (151)
No 1
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.5e-13 Score=115.64 Aligned_cols=70 Identities=37% Similarity=0.643 Sum_probs=65.8
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP 71 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~ 71 (180)
.|||.++|++|+|+.|+++++|+|++||++||+.|+|+|++++|++|++++|.+.+++||+||.......
T Consensus 227 ~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~ 296 (304)
T COG0053 227 VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE 296 (304)
T ss_pred CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence 5899999999999999999999999999999999999999999999999999889999999998765443
No 2
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=99.34 E-value=4e-12 Score=105.28 Aligned_cols=64 Identities=36% Similarity=0.648 Sum_probs=61.6
Q ss_pred CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~ 65 (180)
.|||.++|++|+|++|+ .+++++|+++|+++|+.|+|++++++|+++++++|++.+++||+||.
T Consensus 204 ~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 204 IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 58999999999999999 99999999999999999999999999999999999989999999994
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=99.34 E-value=5.2e-12 Score=107.03 Aligned_cols=65 Identities=26% Similarity=0.528 Sum_probs=61.7
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
+|||.++|++|+|++|+..++++|+++|+++|+.|+|+|++++|++|++++|. .+++||+||++.
T Consensus 225 ~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~-~~v~ihveP~~~ 289 (299)
T PRK09509 225 WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDPCSV 289 (299)
T ss_pred CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCCCC
Confidence 58999999999999999999999999999999999999999999999999996 689999999763
No 4
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=99.11 E-value=5.5e-10 Score=93.06 Aligned_cols=66 Identities=29% Similarity=0.489 Sum_probs=62.5
Q ss_pred CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
.|||.++|++++|++|+ ..++++|+.+++++|++++|++.+++++.++++++++.+++||++|...
T Consensus 217 ~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 217 VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 48999999999999999 9999999999999999999999999999999999999999999999764
No 5
>PRK03557 zinc transporter ZitB; Provisional
Probab=99.00 E-value=1.7e-09 Score=92.35 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=56.9
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~ 66 (180)
+|||.++|++|+|++|+.+++++|+++++++ ++|+|+++++++|+++++ +.+++||+||..
T Consensus 233 ~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~ 293 (312)
T PRK03557 233 IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQP 293 (312)
T ss_pred CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence 6999999999999999999999999999886 679999999999999987 789999999974
No 6
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.69 E-value=2.1e-07 Score=78.91 Aligned_cols=79 Identities=11% Similarity=0.278 Sum_probs=68.3
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP 175 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~ 175 (180)
..+.+++.+.+ +|...++++++++..+....+++++.+|+++++.++|++++++|+.+++++|.. .|.||+||..+++
T Consensus 214 ~~~~I~~~i~~-~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~~~~ 291 (299)
T PRK09509 214 ERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCSVVP 291 (299)
T ss_pred HHHHHHHHHHh-CCCCcCceeeeeEeeCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCCCCC
Confidence 44555555556 788889999999999988999999999999999999999999999999999976 5999999977665
Q ss_pred C
Q 030287 176 E 176 (180)
Q Consensus 176 ~ 176 (180)
+
T Consensus 292 ~ 292 (299)
T PRK09509 292 R 292 (299)
T ss_pred c
Confidence 4
No 7
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.60 E-value=3.3e-07 Score=75.87 Aligned_cols=66 Identities=27% Similarity=0.498 Sum_probs=61.1
Q ss_pred hhccCCCCCceeeEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287 104 LSTKFPEKMGVERITHHLLHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170 (180)
Q Consensus 104 ~~~~~~~~~~v~~v~~h~~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~ 170 (180)
+.+ .+...++++++++..+. +..+++++.+|++++++++|++++++|++++++.|++..|.||+||
T Consensus 201 i~~-~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep 267 (268)
T TIGR01297 201 ILS-IPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEP 267 (268)
T ss_pred Hhc-CCCcccceEeEEEEcCCCCEEEEEEEEECCCCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 345 67788999999999997 8999999999999999999999999999999999999999999997
No 8
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.55 E-value=7.6e-07 Score=75.99 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=69.6
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP 175 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~ 175 (180)
..+.++..+.+ .+....+++++.++.+.+..+++++.+|+++++.++|++++++|+.+++..|+...|.||.||-.+-.
T Consensus 216 ~~~~i~~~i~~-~~~V~~v~~lr~R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~ 294 (304)
T COG0053 216 DLEKIRAIILS-VPGVKGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKE 294 (304)
T ss_pred HHHHHHHHHhc-CCcceeeecceeeeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 44444555556 67788999999999999999999999999999999999999999999999999999999999976554
Q ss_pred C
Q 030287 176 E 176 (180)
Q Consensus 176 ~ 176 (180)
+
T Consensus 295 ~ 295 (304)
T COG0053 295 E 295 (304)
T ss_pred c
Confidence 3
No 9
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=98.35 E-value=6.1e-06 Score=68.69 Aligned_cols=77 Identities=18% Similarity=0.414 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhccCCCCCceeeEEEEEeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 95 DIDAVVYNTLSTKFPEKMGVERITHHLLHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 95 ~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
+..+.++..+++ .+.+..++++++...+. ...+++++.+++++++++++++++++++.+++++|++..|.||+||..
T Consensus 205 ~~~~~i~~~i~~-~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~ 282 (284)
T PF01545_consen 205 ELVEKIRRIIES-VPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDE 282 (284)
T ss_dssp HHHHHHHHHHHH-TSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECG
T ss_pred cchhHHHHhhcc-CCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecC
Confidence 444555666656 78889999999999998 999999999999999999999999999999999999999999999874
No 10
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.88 E-value=0.00013 Score=62.30 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=55.3
Q ss_pred hccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 105 STKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 105 ~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
.. +|...++|++++.++++...+++++.++++. +++++++++++.++++++ +..|.||+|+..
T Consensus 231 ~~-~~gV~~vh~l~~~~~G~~~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~-i~~vtIh~e~~~ 293 (312)
T PRK03557 231 RE-IPEVRNVHHVHVWMVGEKPVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQ-IEHATIQMEYQP 293 (312)
T ss_pred hc-CCCceeEEEEEEEEeCCeEEEEEEEEECCCC---CHHHHHHHHHHHHHHhCC-CCEEEEEeccCc
Confidence 34 7888999999999999899999999999876 578999999999988774 899999999873
No 11
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=97.86 E-value=4.7e-05 Score=66.98 Aligned_cols=65 Identities=34% Similarity=0.588 Sum_probs=60.3
Q ss_pred CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCC
Q 030287 3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ 68 (180)
Q Consensus 3 ~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~ 68 (180)
+.+..++.+|+..+|..+++++|+.+|++|++.++|+|.+.+++.|.. +|++.+.+||+|-....
T Consensus 339 ~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~e~~h 403 (412)
T KOG1485|consen 339 KLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDYEFLH 403 (412)
T ss_pred CccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCccccC
Confidence 467899999999999999999999999999999999999999999986 99999999999876654
No 12
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0066 Score=51.74 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~ 65 (180)
.|||.++||+.++..++ .....+|+.+++..+-++ +.+.+++.+.++++ +.++||++|+.
T Consensus 234 ~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~~~~---~~~~~~~~l~~~~~-I~hvTiQ~e~~ 294 (296)
T COG1230 234 IPGVASVHDLHVWSITGGEHALTLHVVVDEVADADA---ALDQIVRRLLEKYG-IEHVTIQLETE 294 (296)
T ss_pred CCCccceeecccCCCCCCceeEEEEEEecCccchHH---HHHHHHHHHhhhcC-cceEEEEecCC
Confidence 58999999999999976 899999999995544444 88999999999887 79999999874
No 13
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=96.09 E-value=0.023 Score=49.69 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=56.4
Q ss_pred CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCC
Q 030287 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF 69 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~ 69 (180)
.+||.+||+|+++.-+- +....+|+.++++ +++.++-+++.+.|+++|. +..+||.+||.....
T Consensus 306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~~~ 370 (379)
T KOG1482|consen 306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYG-ISHVTIQIEPYTEEM 370 (379)
T ss_pred hcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcc-eEEEEEEecCCccch
Confidence 58999999999999986 8889999999955 6677889999999999997 799999999987653
No 14
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.25 Score=43.89 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287 94 LDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170 (180)
Q Consensus 94 ~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~ 170 (180)
+.++......|+. -.....+..+...+++....|++++++|+++++..||++..-+.+.+-. .|.+.|.-+|++-
T Consensus 325 e~L~~~~~~~l~~-~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~-l~ever~fvh~d~ 399 (412)
T KOG1485|consen 325 EYLEIITYLILQH-GKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIEL-LPEVERAFVHIDY 399 (412)
T ss_pred HHHHHHHHHHHhh-cCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhh-cchheeeeeecCc
Confidence 4455555555555 3455678888889999999999999999999999999999999877655 9999999999764
No 15
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=94.17 E-value=2.5 Score=41.68 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=87.8
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCC-CCCcccc--cccccccCCCCCCCccHHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF-SPSTMDQ--LGLEGCKAHSSNICVDDLDID 97 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~i~ 97 (180)
.+.++++.|++.|+++..++++++|+.|+ +.|++.++...+--..... ....... ..+..... .........++.
T Consensus 560 ~~~v~v~lp~Gtsle~t~~~~~~ve~~L~-~~p~V~~v~s~vG~~~~~~~~~~~~~~~~i~L~~~~~-r~~~~~~~~~l~ 637 (1021)
T PF00873_consen 560 EFYVSVELPPGTSLEETDAIVKQVEDILK-EDPEVKSVSSRVGRGFSGFNAGPNSASIFINLKPKSE-RPGSKESIDELI 637 (1021)
T ss_dssp EEEEEEEESTTC-HHHHHHHHHHHHHHHH-TTTTEEEEEEEESECSST--ECTTEEEEEEEE--CTC-S-SCCCSHHHHH
T ss_pred ceEEEEeeccCchHHHHHHHHHHHHHHHH-hhhhhhccceEeccccccccCCCcceEEEEEEeeccc-ccccchhHHHHH
Confidence 57899999999999999999999999988 6898888876663211100 0000000 00000000 000122456777
Q ss_pred HHHHHhhhccCCCCCceeeEEEEEe--------CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 98 AVVYNTLSTKFPEKMGVERITHHLL--------HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 98 ~~l~~~~~~~~~~~~~v~~v~~h~~--------~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
+.++..+.+ ++.. .+..... .++....+.+.+-++ ..++..+++.++++.+ ++.|++.. +...
T Consensus 638 ~~lr~~l~~-~~~~----~~~~~~~~~~~~~~~~~g~~~~i~v~i~G~-d~~~L~~~a~~v~~~l-~~~pgv~d--v~~~ 708 (1021)
T PF00873_consen 638 DELRQKLKQ-LPGA----RVFVFSPPDLRGLGSGPGSSAPIQVEIYGD-DLEELRKAAEKVKAKL-AEIPGVTD--VRDD 708 (1021)
T ss_dssp HHHHHHCCT-STSS----EEEEEEHCSSCCCCSSSSEEEEEEEECSSS-CHHHHHHHHHHHHHHH-HHSTTEEE--EEES
T ss_pred HHHHHhhhh-CCCc----ceeccccccccccccccccceeeeeccCCC-CHHHHHHHHHHHHHHH-HhCCCccc--cccc
Confidence 777777665 6542 2222221 134566666666654 3467889999997655 55998844 4555
Q ss_pred cCCCCCCCcc
Q 030287 170 LGRPIPEYQL 179 (180)
Q Consensus 170 ~~~~~~~~~~ 179 (180)
.+.+-|+|++
T Consensus 709 ~~~~~~el~i 718 (1021)
T PF00873_consen 709 WEDGQPELRI 718 (1021)
T ss_dssp SSSBEEEEEE
T ss_pred ccccCcceEE
Confidence 7777777765
No 16
>PRK09579 multidrug efflux protein; Reviewed
Probab=93.50 E-value=1.8 Score=42.84 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=80.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe-eCCCCCCCCcccccccccccCCCCCCCccHHHHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID-PAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAV 99 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 99 (180)
.+.++++.|++.|+++..+..+++|+.+++ .|++......+- +.... ... .+.+.. .........++.+.
T Consensus 557 ~~~v~~~~p~gt~l~~t~~~~~~ie~~l~~-~p~v~~~~~~~G~~~~~~-~~~---~i~l~~----~~~r~~~~~~~~~~ 627 (1017)
T PRK09579 557 IIFMMSSSPQPANLDYLNAYTDEFTPIFKS-FPEYYSSFQINGFNGVQS-GIG---GFLLKP----WNERERTQMELLPL 627 (1017)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEEEeccCCCcc-ceE---EEEecc----hHhccCCHHHHHHH
Confidence 346789999999999999999999999874 677655432221 10000 000 000000 00001123567777
Q ss_pred HHHhhhccCCCCCceeeEEEE--EeCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCCC
Q 030287 100 VYNTLSTKFPEKMGVERITHH--LLHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIPE 176 (180)
Q Consensus 100 l~~~~~~~~~~~~~v~~v~~h--~~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~~ 176 (180)
++.-+.. +|.. ..+.+- .+.| +-...+.+.+..+-..+.-.+++.++++.++ +.|++..|... .+.+-|+
T Consensus 628 l~~~l~~-~p~~---~~~~~~~~~~~g~g~~~~v~i~i~gg~d~~~L~~~a~~l~~~l~-~~~g~~~v~~~--~~~~~~e 700 (1017)
T PRK09579 628 VQAKLEE-IPGL---QIFGFNLPSLPGTGEGLPFQFVINTANDYESLLQVAQRVKQRAQ-ESGKFAFLDID--LAFDKPE 700 (1017)
T ss_pred HHHHHhc-CCCc---EEEeecCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-cCCCcEEeecc--ccCCCce
Confidence 7776655 6642 212221 1212 1111245555443355678899999976654 58988777766 5556777
Q ss_pred Ccc
Q 030287 177 YQL 179 (180)
Q Consensus 177 ~~~ 179 (180)
+++
T Consensus 701 l~i 703 (1017)
T PRK09579 701 VVV 703 (1017)
T ss_pred EEE
Confidence 765
No 17
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=93.32 E-value=1.7 Score=30.45 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=52.7
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCC--HHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSS--VSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~s--v~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~ 66 (180)
+|++.+-..+.+.+-|..=.+.+.+++.+..+ ..+..+++++++++|++.++ ..+.|++-|..
T Consensus 16 ~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg--v~~~V~lv~~g 80 (96)
T PF14535_consen 16 FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG--VRPEVELVPPG 80 (96)
T ss_dssp STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS--S-EEEEEE-TT
T ss_pred CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC--ceEEEEEECCC
Confidence 58888888999999999888999999999874 57899999999999999998 56777777654
No 18
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=90.69 E-value=0.87 Score=40.27 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=44.1
Q ss_pred CCCceeeeeEEEEee-CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 030287 2 SLSLQGCHRLRGRRA-GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID 63 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~-G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid 63 (180)
+|||..||++.++.. |.++.+.+||.+..--.-. ++++.|++-+.+ ++ +-.+||..|
T Consensus 311 ~~gv~~vh~lhvWqL~~~r~IAt~Hi~~~~p~~~~---~~a~~ir~~fh~-~G-Ihs~TiqPe 368 (404)
T KOG1483|consen 311 VPGVISVHDLHVWQLAGSRIIATIHIQIQNPKEYM---KIAEKIRSYFHD-QG-IHSTTIQPE 368 (404)
T ss_pred CcceeeeeeeeeeeeccceEEEEEEEEecCcHHHH---HHHHHHHHHHHh-cC-Ccceeeccc
Confidence 699999999999998 6699999999997542222 888888888875 55 566765544
No 19
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=90.46 E-value=11 Score=37.58 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=83.0
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEEeeCCCC-CCCCccccc--ccccccCCCCCCCccHHH
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHIDPAYFQ-FSPSTMDQL--GLEGCKAHSSNICVDDLD 95 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~-~~~v~~v~IHidP~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 95 (180)
-.+.++++.|++.|+++..+.+.++|+.|++. .|++..+...+-..... ... .-++ .+....... .......+
T Consensus 569 ~~~~v~~~~p~gt~l~~t~~~~~~~e~~l~~~~~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~r~-~~~~~~~~ 645 (1037)
T PRK10555 569 GMFTTSVQLPSGSTQQQTLKVVEKVEKYYFTHEKDNVMSVFATVGSGPGGNGQN--VARMFIRLKDWDERD-SKTGTSFA 645 (1037)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEeccCCCCCCCc--eEEEEEEecCHHhCC-CccCCHHH
Confidence 34578999999999999999999999999863 57777766555321000 000 0000 000000000 00012346
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEE---Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHH---LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h---~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
+.+.+++.+.. +|.. ++..- .+ + +.--+.+.+.=+++...+.-.+++.++++.++ +.|++..|...
T Consensus 646 ~~~~l~~~l~~-~p~~----~~~~~~~~~~~~~g~~~~v~v~l~g~~g~d~~~L~~~a~~l~~~l~-~~~gv~~v~~~-- 717 (1037)
T PRK10555 646 IIERATKAFNK-IKEA----RVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAA-KNPELTRVRHN-- 717 (1037)
T ss_pred HHHHHHHHHhc-CCCc----EEEeeccccCCCCCCCCCEEEEEEcCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEecC--
Confidence 66677777755 6542 11111 12 1 12224444443433456677889999986665 48988877765
Q ss_pred cCCCCCCCcc
Q 030287 170 LGRPIPEYQL 179 (180)
Q Consensus 170 ~~~~~~~~~~ 179 (180)
....-|++++
T Consensus 718 ~~~~~~~l~i 727 (1037)
T PRK10555 718 GLDDSPQLQI 727 (1037)
T ss_pred CcCCCceEEE
Confidence 4455666654
No 20
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=90.46 E-value=2.5 Score=41.31 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=87.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCC----CcccccccccccCCCCCCCc---cHHHH
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP----STMDQLGLEGCKAHSSNICV---DDLDI 96 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~i 96 (180)
......|..|++++-+....+++.++ ++|++..|.-..--.+..... |...-..+.. -..++ .++++
T Consensus 562 ~~~~~~Pg~Sl~~~~~m~~~~e~~ik-~~PeV~~V~~k~GrAe~~tD~~~~n~~et~I~Lkp-----~~eW~~~~t~~~l 635 (1027)
T COG3696 562 YMPLTIPGVSLDEALRMLQAIERAIK-KFPEVERVFGKTGRAETATDPAPLNMIETFIELKP-----QEEWKDKKTRDEL 635 (1027)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHh-cCcchheeeeccccCCCCCCCCCcccceeeEEecc-----hhhCCCcccHHHH
Confidence 45677889999999999999999999 799998887655333221111 1100001110 01122 47888
Q ss_pred HHHHHHhhhccCCCCCceeeEEE----EEeC---CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 97 DAVVYNTLSTKFPEKMGVERITH----HLLH---GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 97 ~~~l~~~~~~~~~~~~~v~~v~~----h~~~---~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
.+++++.+++ +|.. ...-. |.++ .++.-++-+.+=+ -.+++-.+++++++ ++++..|+.. ++.+|
T Consensus 636 ie~l~~~~~~-lpG~---~~~~tqPI~~R~delltGVrsdvaIKvfG-~Dl~~L~~la~qI~-~~lk~v~Ga~--dv~~E 707 (1027)
T COG3696 636 IEELRKTLEQ-LPGL---ANSFTQPIRMRIDELLTGVRSDLAIKVFG-DDLAELNELAEQIE-EVLKTVPGAV--DVLAE 707 (1027)
T ss_pred HHHHHHHHHh-CCCc---ccccccchhHHHHHHHhccccceEEEEeC-CCHHHHHHHHHHHH-HHHhcCcchh--hheee
Confidence 8888888877 7641 11111 2222 2333333444433 34467889999997 5566688765 45667
Q ss_pred cCCCCCCCccC
Q 030287 170 LGRPIPEYQLQ 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
...+.|++|.+
T Consensus 708 ~~~g~~~l~I~ 718 (1027)
T COG3696 708 RQEGGPYLQID 718 (1027)
T ss_pred ecCCceeEEEe
Confidence 99999988853
No 21
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=90.10 E-value=7.9 Score=38.54 Aligned_cols=151 Identities=10% Similarity=0.050 Sum_probs=81.9
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhC-CCeeEEEEEEeeCCC-CCCCCccccc--ccccccCCCCCCCccHH
Q 030287 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSH-PEVSEVFIHIDPAYF-QFSPSTMDQL--GLEGCKAHSSNICVDDL 94 (180)
Q Consensus 19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~-~~v~~v~IHidP~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 94 (180)
.-.+.++++.|++.|+++..+++.++|+.|.+.- |++..+...+-.... .... ..++ .+..... .........
T Consensus 569 ~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l~~~~~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~-r~~~~~~~~ 645 (1044)
T TIGR00915 569 QGVFMTIVQLPAGATAERTQKVLAQVEKYLLAKEKANVESVFTVNGFSFAGRGQN--SGMAFIRLKDWEE-RTGKENSVF 645 (1044)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEecccCCCCCcc--eEEEEEEecCHHh-CCCccCCHH
Confidence 3456788899999999999999999999998643 567666654432100 0000 0000 0000000 000011345
Q ss_pred HHHHHHHHhhhccCCCCCceeeEEEE--Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 95 DIDAVVYNTLSTKFPEKMGVERITHH--LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 95 ~i~~~l~~~~~~~~~~~~~v~~v~~h--~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
++.+.++..+.+ +|... .+.+- .+ + +.--+.+.+.=+.+-..+...+++.++++.+ ++.|++..|...
T Consensus 646 ~i~~~~~~~l~~-~p~~~---~~~~~~~~~~~~g~~~~i~i~l~g~~G~d~~~L~~~a~~l~~~l-~~~pg~~~v~~~-- 718 (1044)
T TIGR00915 646 AIAGRATGHFSQ-IKDAM---VIAFNPPAILELGNATGFDFFLQDRAGLGHEALMQARNQLLGLA-AQNPALTRVRPN-- 718 (1044)
T ss_pred HHHHHHHHHHhc-CCCce---eeeecCCCCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHH-hcCCCeEEeecc--
Confidence 677777777766 66531 11111 11 1 1112333433222345567788999997665 459988776555
Q ss_pred cCCCCCCCcc
Q 030287 170 LGRPIPEYQL 179 (180)
Q Consensus 170 ~~~~~~~~~~ 179 (180)
....-||+++
T Consensus 719 ~~~~~~~~~i 728 (1044)
T TIGR00915 719 GLEDEPQFKL 728 (1044)
T ss_pred ccCCCceEEE
Confidence 5556677654
No 22
>PRK09577 multidrug efflux protein; Reviewed
Probab=88.84 E-value=16 Score=36.32 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=80.3
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe-eCCCCCCCCccccc--ccccccCCCCCCCccHHHH
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID-PAYFQFSPSTMDQL--GLEGCKAHSSNICVDDLDI 96 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid-P~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i 96 (180)
-.+.++++.|++.|+++..++..++|+.|++ .|++..+....- +....... .-++ .+..... .........++
T Consensus 567 ~~~~v~~~~p~gtsl~~t~~~~~~ve~~l~~-~~~v~~~~~~~g~~~~~~~~~--~~~~~v~l~~~~~-r~~~~~~~~~i 642 (1032)
T PRK09577 567 GNFMVMVIRPQGTPLAETMQSVREVESYLRR-HEPVAYTFALGGFNLYGEGPN--GGMIFVTLKDWKE-RKAARDHVQAI 642 (1032)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHHhh-CCCceEEEEEeccCCCCCCcc--eEEEEEEecChhh-ccccccCHHHH
Confidence 3457889999999999999999999999975 577766643321 10000000 0000 0000000 00001123556
Q ss_pred HHHHHHhhhccCCCCCceeeEEEE--Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 97 DAVVYNTLSTKFPEKMGVERITHH--LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 97 ~~~l~~~~~~~~~~~~~v~~v~~h--~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
.+.++..++. +|.. ..+.+- .+ + ++-.+.+.+.-+...+.+.-.+++.++++++ ++.|++..|... ..
T Consensus 643 ~~~l~~~~~~-~p~~---~~~~~~~~~~~~~g~~~~i~i~i~g~~~~d~~~l~~~a~~l~~~l-~~~~g~~~v~~~--~~ 715 (1032)
T PRK09577 643 VARINERFAG-TPNT---TVFAMNSPALPDLGSTSGFDFRLQDRGGLGYAAFVAAREQLLAEG-AKDPALTDLMFA--GT 715 (1032)
T ss_pred HHHHHHHhcc-CCCc---eEEeeccccccCCCCCCcEEEEEEcCCCCCHHHHHHHHHHHHHHH-hcCCCeEEeecc--cc
Confidence 6677666655 6542 111111 11 1 1222444555444345667788899997665 558888655444 55
Q ss_pred CCCCCCcc
Q 030287 172 RPIPEYQL 179 (180)
Q Consensus 172 ~~~~~~~~ 179 (180)
.+-|++++
T Consensus 716 ~~~~~~~i 723 (1032)
T PRK09577 716 QDAPQLKL 723 (1032)
T ss_pred CCCceEEE
Confidence 66666654
No 23
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=88.22 E-value=4.1 Score=35.91 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=46.7
Q ss_pred CCCCCceeeEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287 108 FPEKMGVERITHHLLH-GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP 173 (180)
Q Consensus 108 ~~~~~~v~~v~~h~~~-~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~ 173 (180)
.+.+.+||++.+=-+- |+..++.++.++++. ++.++.++....+++.+. +..|++++|+..+
T Consensus 306 iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~a---d~~~vL~~~~~~i~~~~~-~~~vTiQie~~~~ 368 (379)
T KOG1482|consen 306 IEGVKAVHDLHIWSITVGKVALSVHLAIDSEA---DAEEVLDEARSLIKRRYG-ISHVTIQIEPYTE 368 (379)
T ss_pred hcceeEEEEEEEEEEecCceEEEEEEeecCCC---CHHHHHHHHHHHHHhhcc-eEEEEEEecCCcc
Confidence 4555555555554443 899999999998655 578899999888888665 8999999987643
No 24
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=88.12 E-value=3.9 Score=26.84 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=30.3
Q ss_pred ceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 113 GVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 113 ~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
-+.++.+.. |++.+ .+.++ +.++ ....+..+++++++ ..|++..|.|
T Consensus 25 ~V~~i~i~~--~~V~v--~l~l~~~~~~--~~~~l~~~i~~~l~-~l~gv~~V~V 72 (72)
T PF01883_consen 25 MVRDISIEG--GKVSV--SLELPTPACP--AAEPLREEIREALK-ALPGVKSVKV 72 (72)
T ss_dssp SEEEEEECT--CEEEE--EE--SSTTHT--THHHHHHHHHHHHH-TSTT-SEEEE
T ss_pred CeeEEEEEC--CEEEE--EEEECCCCch--HHHHHHHHHHHHHH-hCCCCceEeC
Confidence 355555544 66655 56666 4565 35689999988877 7999988875
No 25
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=85.96 E-value=18 Score=35.96 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=77.8
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC---CC-CCCCcccccccccccCCCCCCCccHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY---FQ-FSPSTMDQLGLEGCKAHSSNICVDDLDI 96 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i 96 (180)
.+.+.+..++..|+++..++...+|+.+++ .|++.++...+-... .. .+....--..+..... .........++
T Consensus 570 ~~~v~~~~~~Gts~e~t~~~~~~vE~~l~~-~~~v~~~~s~~g~~~~~~~~~~~~~a~i~v~l~~~~~-~~~~~~~~~~~ 647 (1051)
T TIGR00914 570 DLAYQALRIPGTSLAQSVAMQQTLEKLIKS-FPEVARVFAKTGTAEIATDPMPPNASDTYIILKPESQ-WPEGKKTKEDL 647 (1051)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEEeecCCccCCCCCCCcceEEEEEEecccc-ccccCCCHHHH
Confidence 455667789999999999999999999985 677777664432110 00 0000000000000000 00001134566
Q ss_pred HHHHHHhhhccCCCCC-ceeeEEEEE---eC-C-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287 97 DAVVYNTLSTKFPEKM-GVERITHHL---LH-G-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170 (180)
Q Consensus 97 ~~~l~~~~~~~~~~~~-~v~~v~~h~---~~-~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~ 170 (180)
.+.++..+.+ +|... .+..-..-. +. | +--+ .+.+-++ +.++..++++++++.+ +..|++..|....+
T Consensus 648 ~~~l~~~l~~-~p~~~~~~~~~~~~~~~~~~~g~~~~i--~i~l~G~-d~~~L~~~a~~v~~~l-~~~pgv~~v~~~~~- 721 (1051)
T TIGR00914 648 IEEIQEATVR-IPGNNYEFTQPIQMRFNELISGVRSDV--AVKVFGD-DLDDLDATAEKISAVL-KGVPGAADVKVEQT- 721 (1051)
T ss_pred HHHHHHHHhh-CCCcceecccChhhhHHhhccCCCCCe--EEEEECC-CHHHHHHHHHHHHHHH-hcCCCceeeecccc-
Confidence 6677766655 65421 011000000 11 1 2223 3444443 4566788999997665 45999998887644
Q ss_pred CCCCCCCcc
Q 030287 171 GRPIPEYQL 179 (180)
Q Consensus 171 ~~~~~~~~~ 179 (180)
..-||+++
T Consensus 722 -~~~~e~~i 729 (1051)
T TIGR00914 722 -TGLPYLTV 729 (1051)
T ss_pred -CCCceEEE
Confidence 34456654
No 26
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=85.71 E-value=22 Score=35.47 Aligned_cols=146 Identities=10% Similarity=0.022 Sum_probs=83.1
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe-eCCCCCCCCccccc--ccccccCCCCCCCccHHH
Q 030287 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID-PAYFQFSPSTMDQL--GLEGCKAHSSNICVDDLD 95 (180)
Q Consensus 19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHid-P~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 95 (180)
.-.+.+.++.|++.|+++..++..++|+.+++ .|++..+..-+- ........ .-++ .+.. .........+
T Consensus 567 ~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~-~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~----~~~r~~~~~~ 639 (1040)
T PRK10503 567 NGIIQGTLQAPQSSSFANMAQRQRQVADVILQ-DPAVQSLTSFVGVDGTNPSLN--SARLQINLKP----LDERDDRVQK 639 (1040)
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHHHHHHHhh-CCCeEEEEEEeccCCCCCCCc--eEEEEEEecc----hhhccCCHHH
Confidence 44567899999999999999999999999975 688777765543 10000000 0000 0000 0001112456
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEE--Ee-C--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHH--LL-H--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h--~~-~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~ 170 (180)
+.+.++..+.+ +|... +-.-..- .+ . ++..+ .+.+.+ -+.++-.+.+.++++.++ ..|++..|..- .
T Consensus 640 v~~~lr~~l~~-~p~~~-~~~~~~~~~~~~~~~~~~~v--~i~l~G-~d~~~L~~~a~~l~~~l~-~~pgv~~v~~~--~ 711 (1040)
T PRK10503 640 VIARLQTAVAK-VPGVD-LYLQPTQDLTIDTQVSRTQY--QFTLQA-TSLDALSTWVPKLMEKLQ-QLPQLSDVSSD--W 711 (1040)
T ss_pred HHHHHHHHHhc-CCCcE-EeccCCccccccCCCCCCCe--EEEEEC-CCHHHHHHHHHHHHHHHh-cCCCeEEEEcc--c
Confidence 77777777766 66421 1100001 11 1 12223 334433 356678889999976654 49999988753 6
Q ss_pred CCCCCCCcc
Q 030287 171 GRPIPEYQL 179 (180)
Q Consensus 171 ~~~~~~~~~ 179 (180)
+...|++++
T Consensus 712 ~~~~~e~~v 720 (1040)
T PRK10503 712 QDKGLVAYV 720 (1040)
T ss_pred cCCCceEEE
Confidence 667777664
No 27
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=84.65 E-value=19 Score=35.78 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=81.1
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHH
Q 030287 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDA 98 (180)
Q Consensus 19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 98 (180)
.-.+.+.++.|++.|+++..+..+++++.+++ .|++..++..+--...+...+. ..+.. .........++.+
T Consensus 557 ~~~~~v~v~~~~gtsl~~t~~~~~~~~~~l~~-~~~V~~v~~~~g~~~~~~~~~~---v~l~~----~~~r~~~~~~i~~ 628 (1025)
T PRK10614 557 TGRLMGFIQADQSISFQAMRGKLQDFMKIIRD-DPAVDNVTGFTGGSRVNSGMMF---ITLKP----LSERSETAQQVID 628 (1025)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEEEecCCCCceeEEE---EEecc----hhhccCcHHHHHH
Confidence 34456788999999999999999999999875 5777776654421000000000 00000 0001112356777
Q ss_pred HHHHhhhccCCCCCceeeEEEE--EeCCe-EEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287 99 VVYNTLSTKFPEKMGVERITHH--LLHGK-ILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP 175 (180)
Q Consensus 99 ~l~~~~~~~~~~~~~v~~v~~h--~~~~~-~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~ 175 (180)
.+++.+.. +|... +-....- .++|. ..-.+.+.+-++ +...-.+.+.++++.+ ++.|++..|.. ..+..-|
T Consensus 629 ~lr~~l~~-~pg~~-~~~~~~~~~~~~g~~~~~~i~i~l~G~-d~~~L~~~a~~i~~~L-~~~pgv~~v~~--~~~~~~~ 702 (1025)
T PRK10614 629 RLRVKLAK-EPGAN-LFLMAVQDIRVGGRQSNASYQYTLLSD-DLAALREWEPKIRKAL-AALPELADVNS--DQQDKGA 702 (1025)
T ss_pred HHHHHHhc-CCCcE-EEecCCcccCcCCCCCCCCEEEEEECC-CHHHHHHHHHHHHHHH-hcCCCeEEeec--CCCCCCc
Confidence 77776655 65421 1000000 11221 111233444443 4567788999997665 55898887664 4666777
Q ss_pred CCcc
Q 030287 176 EYQL 179 (180)
Q Consensus 176 ~~~~ 179 (180)
||++
T Consensus 703 el~i 706 (1025)
T PRK10614 703 EMAL 706 (1025)
T ss_pred eEEE
Confidence 7764
No 28
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=84.55 E-value=37 Score=33.97 Aligned_cols=150 Identities=9% Similarity=0.028 Sum_probs=78.8
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEEeeCCCC-CCCCccccc--ccccccCCCCCCCccHHH
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHIDPAYFQ-FSPSTMDQL--GLEGCKAHSSNICVDDLD 95 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~-~~~v~~v~IHidP~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 95 (180)
-.+.++++.|+..|+++..++..++|+.++.+ .|++..+...+-..... ... .-++ .+..... .........+
T Consensus 570 ~~~~v~v~~p~gt~l~~t~~~~~~ve~~l~~~~~~~v~~~~~~~G~~~~~~~~~--~~~~~v~l~~~~~-r~~~~~~~~~ 646 (1049)
T PRK15127 570 GVFLTMVQLPAGATQERTQKVLNEVTDYYLTKEKNNVESVFAVNGFGFAGRGQN--TGIAFVSLKDWAD-RPGEENKVEA 646 (1049)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCCCCCCCc--eEEEEEEecCHHh-CcCcccCHHH
Confidence 35678999999999999999999999999753 47776665443210000 000 0000 0000000 0000001345
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEE--E-eC-C-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCC-ccEEEEEEe
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHH--L-LH-G-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPN-VFQVSVKLR 169 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h--~-~~-~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~-~~~V~ih~e 169 (180)
+.+.++..+.+ +|.. ..+.+- . ++ | +.-+.+.+.=+.+...++-.++++++++.++ +.|+ +..|..-
T Consensus 647 i~~~~~~~l~~-~~~~---~~~~~~~~~~~~~g~~~~v~i~v~g~~~~d~~~L~~~a~~l~~~l~-~~~g~~~~v~~~-- 719 (1049)
T PRK15127 647 ITMRATRAFSQ-IKDA---MVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLGEAA-KHPDMLVGVRPN-- 719 (1049)
T ss_pred HHHHHHHHHhc-CCCc---eeeeecCCCCCCCCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHH-hCCCceeeeecC--
Confidence 55666666655 6542 101111 1 11 2 2224344443322455678889999986665 5887 6666554
Q ss_pred cCCCCCCCcc
Q 030287 170 LGRPIPEYQL 179 (180)
Q Consensus 170 ~~~~~~~~~~ 179 (180)
....-|++++
T Consensus 720 ~~~~~~~i~i 729 (1049)
T PRK15127 720 GLEDTPQFKI 729 (1049)
T ss_pred ccCCCceEEE
Confidence 4555566654
No 29
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=79.50 E-value=12 Score=32.01 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCCCCceeeEEEEEeC-CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 108 FPEKMGVERITHHLLH-GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 108 ~~~~~~v~~v~~h~~~-~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
.|...++|++.+.-+. +...+++++.++.... .+++.+++++.+.+ ..++..|++++|.+.
T Consensus 234 ~~~v~~vhdlHvWsi~~~~~~~t~Hv~v~~~~~---~~~~~~~~~~~l~~-~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 234 IPGVASVHDLHVWSITGGEHALTLHVVVDEVAD---ADAALDQIVRRLLE-KYGIEHVTIQLETEG 295 (296)
T ss_pred CCCccceeecccCCCCCCceeEEEEEEecCccc---hHHHHHHHHHHHhh-hcCcceEEEEecCCC
Confidence 7777778888887775 5688899999994443 23377777766665 456999999988753
No 30
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=75.47 E-value=56 Score=32.71 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=81.5
Q ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCeeEEEEEEeeCCCCC-CCCcccccccccccCCCCCC-CccHHH
Q 030287 19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVSEVFIHIDPAYFQF-SPSTMDQLGLEGCKAHSSNI-CVDDLD 95 (180)
Q Consensus 19 ~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~-~~~v~~v~IHidP~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 95 (180)
+-++.+.+..|+..|+++..+..+++|+.+... .|++..++.-+---..++ ..+.. ..+.+ .... .....+
T Consensus 552 ~g~~~v~~~~p~g~sl~~t~~~~~~ve~~~~~~~~~~v~~v~~~~G~g~~~~~~~~~~--~~Lk~----~~er~~~~~~~ 625 (1009)
T COG0841 552 QGEFMVQVQLPEGASLERTAEVVRQVEDWLLILEKPEVESVFTVVGFGSGQNNAGRAF--VSLKP----WSERKENSAQA 625 (1009)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEeccCCCCCCcceEE--EecCC----hhhcccccHHH
Confidence 345678899999999999999999999986542 688877765554310111 11000 00000 0000 122344
Q ss_pred HHHHHHHhhhccCCCCCceeeEE---EEEeC--CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEec
Q 030287 96 IDAVVYNTLSTKFPEKMGVERIT---HHLLH--GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRL 170 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~---~h~~~--~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~ 170 (180)
+.+.++..+++ ++.. .+--.. +--+. ++. .+.+.+..+ ..+...+.+.++.+++++ .| ... ++.+.
T Consensus 626 ~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~--~~~~~~~g~-d~~~l~~~a~~~~~~~~~-~p-~~~--v~~~~ 696 (1009)
T COG0841 626 IIARLTKELAK-IPDA-TVFAFTPPAVDGLGQGSGF--PFQLRDRGG-DLEALRQAANQLLEKANQ-SP-LLN--VRSDL 696 (1009)
T ss_pred HHHHHHHHhhc-CCcc-ceeccCCCccccCCCCCCc--cEEEEEeCC-CHHHHHHHHHHHHHHHhh-CC-Ccc--ccCCC
Confidence 55555544444 3221 000011 11111 233 445566666 667788899999766544 77 444 77778
Q ss_pred CCCCCCCcc
Q 030287 171 GRPIPEYQL 179 (180)
Q Consensus 171 ~~~~~~~~~ 179 (180)
+.+.||+++
T Consensus 697 ~~~~p~l~i 705 (1009)
T COG0841 697 LPDTPQLQV 705 (1009)
T ss_pred CCCCceEEE
Confidence 888898875
No 31
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=72.77 E-value=30 Score=24.22 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=34.6
Q ss_pred eEEEEEe-CCeEEEEEEEEeCCCCChhH-HHHHHHHHHHHHHHHCC-CccEEEEEE
Q 030287 116 RITHHLL-HGKILLEVEVSMSPDTSIRD-AMKVAEEAEKEIMKAAP-NVFQVSVKL 168 (180)
Q Consensus 116 ~v~~h~~-~~~~~v~~d~~v~~~~~i~~-ah~ia~~le~~i~~~~p-~~~~V~ih~ 168 (180)
.+.+..- ++++.+++++.+.++.++.+ +.++.+++.+++..-.+ .+.+|+|++
T Consensus 49 ~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V 104 (108)
T PF03780_consen 49 GVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHV 104 (108)
T ss_pred CeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEE
Confidence 3444333 78899999999999998876 55555555555544222 445677665
No 32
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=67.59 E-value=38 Score=23.44 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCC--hhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 94 LDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTS--IRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 94 ~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~--i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
++|+++| .+ +|....--++.+..-++.-.+.+.+++.++.+ ..+..+++.+|++++++... + ++.|.+-+.
T Consensus 7 ~~Ie~vl----~~-~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg-v-~~~V~lv~~ 79 (96)
T PF14535_consen 7 SQIEEVL----RE-FPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLG-V-RPEVELVPP 79 (96)
T ss_dssp HHHHHHH----CT-STTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS-S--EEEEEE-T
T ss_pred HHHHHHH----Hh-CcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC-c-eEEEEEECC
Confidence 3577666 45 76644445666666667777777888888764 35678899999988888765 3 345555565
Q ss_pred CCCCC
Q 030287 172 RPIPE 176 (180)
Q Consensus 172 ~~~~~ 176 (180)
..+|.
T Consensus 80 gtLpr 84 (96)
T PF14535_consen 80 GTLPR 84 (96)
T ss_dssp T-S--
T ss_pred CCccC
Confidence 55553
No 33
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=67.50 E-value=39 Score=23.56 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=36.7
Q ss_pred EEEEee-CCEEEEEEEEEECCCCCHHH-HHHHHHHHHHHHHhhCC-CeeEEEEEEe
Q 030287 11 LRGRRA-GSSLYLDVHIVVDPFSSVSA-AHGVGENVRHQIHKSHP-EVSEVFIHID 63 (180)
Q Consensus 11 lr~r~~-G~~~~vd~hI~v~~~~sv~e-aH~I~~~ie~~i~~~~~-~v~~v~IHid 63 (180)
++++.- +..+.+++++.+....++.+ +.++.+++.+.+.+-.+ .+..|.|++.
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 566655 78999999999999998865 45566666666665433 2346666664
No 34
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=65.13 E-value=28 Score=26.74 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=46.3
Q ss_pred CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (180)
Q Consensus 4 gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~ 65 (180)
.+-+|.+-.+--+|..++|-+.+. .. -.....|...|++++++.+|.+..|.|.-+|.
T Consensus 86 ~~~~V~~A~vvv~~~~a~Vav~~~-~~---~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 86 KVPGVEDATVVVTDDNAYVAVDLD-FN---RFNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred cCCCceEEEEEEECCEEEEEEEec-cc---ccchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 456777888888999999988888 32 24456888999999999999878888887764
No 35
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.48 E-value=41 Score=25.36 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=35.4
Q ss_pred eEEEEEeC-CeEEEEEEEEeCCCCChhH-HHHHHHHHHHHHHHHCC--CccEEEEEE
Q 030287 116 RITHHLLH-GKILLEVEVSMSPDTSIRD-AMKVAEEAEKEIMKAAP--NVFQVSVKL 168 (180)
Q Consensus 116 ~v~~h~~~-~~~~v~~d~~v~~~~~i~~-ah~ia~~le~~i~~~~p--~~~~V~ih~ 168 (180)
.+.+---. +++.+++.|.+..+.++.+ |+.+.+.++..+.. .- .+.+|+||.
T Consensus 56 GV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~-mtgl~v~~VNV~V 111 (131)
T COG1302 56 GVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVEN-MTGLKVVEVNVHV 111 (131)
T ss_pred CeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHH-hhCCceEEEEEEE
Confidence 44444424 4599999999999999887 66666666555544 33 455777776
No 36
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=61.34 E-value=1.8e+02 Score=29.09 Aligned_cols=122 Identities=7% Similarity=0.077 Sum_probs=67.5
Q ss_pred EEEEEEEECCCCCHHHH-HHHHHHHHHHHHhhCCCeeEEE------------EEEeeCCCCCCCCcccccccccccCCCC
Q 030287 21 YLDVHIVVDPFSSVSAA-HGVGENVRHQIHKSHPEVSEVF------------IHIDPAYFQFSPSTMDQLGLEGCKAHSS 87 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~ea-H~I~~~ie~~i~~~~~~v~~v~------------IHidP~~~~~~~~~~~~~~~~~~~~~~~ 87 (180)
.+.+...-|+. |.++. ..++..+|++|.. .+++..+. +.+++..
T Consensus 42 ~v~V~t~ypGa-sp~~vE~~Vt~plE~~l~~-v~gv~~i~S~S~~~G~s~i~v~f~~g~--------------------- 98 (1037)
T PRK10555 42 NVRITANYPGA-SAQTLENTVTQVIEQNMTG-LDNLMYMSSQSSGTGQASVTLSFKAGT--------------------- 98 (1037)
T ss_pred EEEEEEecCCC-CHHHHHHHHhHHHHHHhcC-CCCceEEEEEecCCCeEEEEEEEECCC---------------------
Confidence 34555555666 54444 5568889998864 55555442 2222211
Q ss_pred CCCccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHH-HHHHHHHHHHHHCCCccEEE
Q 030287 88 NICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMS-PDTSIRDAMK-VAEEAEKEIMKAAPNVFQVS 165 (180)
Q Consensus 88 ~~~~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~-ia~~le~~i~~~~p~~~~V~ 165 (180)
.......++++++..+... +|.......+........-.+.+-+.-+ ...+..+..+ ++++++..+ +..|++..|.
T Consensus 99 d~~~a~~~V~~~v~~~~~~-LP~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L-~~v~GV~~V~ 176 (1037)
T PRK10555 99 DPDEAVQQVQNQLQSAMRK-LPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPL-SRVNGVGDID 176 (1037)
T ss_pred CHHHHHHHHHHHHHHHHHh-CCCccccCCceEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEE
Confidence 1233466788888766555 8864333334443333322233333222 2356566666 457787664 5599999998
Q ss_pred EE
Q 030287 166 VK 167 (180)
Q Consensus 166 ih 167 (180)
+.
T Consensus 177 ~~ 178 (1037)
T PRK10555 177 AY 178 (1037)
T ss_pred Ec
Confidence 75
No 37
>PRK09577 multidrug efflux protein; Reviewed
Probab=61.25 E-value=1.8e+02 Score=29.07 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=67.9
Q ss_pred EEEEEEEECCCCCHHHH-HHHHHHHHHHHHhhCCCeeEEE---------EEEeeCCCCCCCCcccccccccccCCCCCCC
Q 030287 21 YLDVHIVVDPFSSVSAA-HGVGENVRHQIHKSHPEVSEVF---------IHIDPAYFQFSPSTMDQLGLEGCKAHSSNIC 90 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~ea-H~I~~~ie~~i~~~~~~v~~v~---------IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (180)
.+.+...-|+. |.++. ..++..+|++|. ..+++.++. |.++-.... ...
T Consensus 42 ~v~V~t~~pGa-sp~~VE~~Vt~plE~~L~-~v~gv~~i~S~S~~G~s~I~v~f~~g~-------------------d~~ 100 (1032)
T PRK09577 42 VVSIYATYPGA-SAQVVEESVTALIEREMN-GAPGLLYTSATSSAGQASLSLTFKQGV-------------------NAD 100 (1032)
T ss_pred EEEEEEEcCCC-CHHHHHHHHHHHHHHHhc-CCCCceEEEEEecCCeEEEEEEEECCC-------------------ChH
Confidence 45666667765 55554 458899999886 466665542 222211111 122
Q ss_pred ccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHH-HHHHHHHHHHCCCccEEEEE
Q 030287 91 VDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSP-DTSIRDAMKVA-EEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 91 ~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~-~~~i~~ah~ia-~~le~~i~~~~p~~~~V~ih 167 (180)
....++++++..+... +|.......+.+-.++....+.+-+..+. ..+..+-.+.+ ++++.++. +.|++..|.+-
T Consensus 101 ~a~~~V~~~v~~~~~~-LP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~-~v~GV~~V~~~ 177 (1032)
T PRK09577 101 LAAVEVQNRLKTVEAR-LPEPVRRDGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALR-RVEGVGKVQFW 177 (1032)
T ss_pred HHHHHHHHHHHHHHHh-CCcccccCCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHh-cCCCcEEEEec
Confidence 2356778777766555 88643333333333443222333343332 24545555544 66876654 49999999874
No 38
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=60.29 E-value=46 Score=24.10 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEe
Q 030287 92 DDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSM 134 (180)
Q Consensus 92 ~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v 134 (180)
..+++++.++.+|.. -|...+|.++.+..-++.+.++|.+.-
T Consensus 66 ~~sEi~r~I~EaL~~-d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 66 VESEIEREIEEALLQ-DPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred HHHHHHHHHHHHHhc-CCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 456788888888877 688899999999888899999998864
No 39
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=57.23 E-value=2.1e+02 Score=28.57 Aligned_cols=130 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred EEEEEEEECCCCCHHHHH-HHHHHHHHHHHhhCCCeeEEEE---------EEeeCCCCCCCCcccccccccccCCCCCCC
Q 030287 21 YLDVHIVVDPFSSVSAAH-GVGENVRHQIHKSHPEVSEVFI---------HIDPAYFQFSPSTMDQLGLEGCKAHSSNIC 90 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH-~I~~~ie~~i~~~~~~v~~v~I---------HidP~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (180)
.+.+....|+. |.++.. .++..+|++|. ..+++.++.- .++.....+ ..
T Consensus 44 ~v~V~~~~pGa-s~~~ve~~vt~piE~~l~-~i~gv~~i~S~s~~G~s~i~l~f~~~~d-------------------~~ 102 (1025)
T PRK10614 44 VIMVSASLPGA-SPETMASSVATPLERSLG-RIAGVNEMTSSSSLGSTRIILQFDFDRD-------------------IN 102 (1025)
T ss_pred eEEEEEEcCCC-CHHHHHHHHHHHHHHHhc-CCCCceEEEEEecCCeEEEEEEEECCCC-------------------hH
Confidence 45666777755 666655 67799999997 4777777642 222211111 22
Q ss_pred ccHHHHHHHHHHhhhccCCCCCceeeEEEEEeC--CeEEEEEEEEeCCCCChhHHHHHH-HHHHHHHHHHCCCccEEEEE
Q 030287 91 VDDLDIDAVVYNTLSTKFPEKMGVERITHHLLH--GKILLEVEVSMSPDTSIRDAMKVA-EEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 91 ~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~--~~~~v~~d~~v~~~~~i~~ah~ia-~~le~~i~~~~p~~~~V~ih 167 (180)
..+.++++++..+... +|.... ....+-.++ +.-.+.+-+. ..+.+.++..+.+ .+++.++. +.|++.+|.+.
T Consensus 103 ~a~~~v~~~v~~~~~~-LP~~~~-~~p~~~~~~~~~~pv~~~~~~-~~~~~~~~L~~~~~~~l~~~L~-~i~GV~~V~~~ 178 (1025)
T PRK10614 103 GAARDVQAAINAAQSL-LPSGMP-SRPTYRKANPSDAPIMILTLT-SDTYSQGQLYDFASTQLAQTIS-QIDGVGDVDVG 178 (1025)
T ss_pred HHHHHHHHHHHHHHhh-CCCccC-CCCEEEecCCCccceeEEEEE-cCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEec
Confidence 2356788887766555 875421 122222233 2222323332 2335666666654 67876654 59999999875
Q ss_pred EecCCCCCCCc
Q 030287 168 LRLGRPIPEYQ 178 (180)
Q Consensus 168 ~e~~~~~~~~~ 178 (180)
+..-||+|
T Consensus 179 ---G~~~~ei~ 186 (1025)
T PRK10614 179 ---GSSLPAVR 186 (1025)
T ss_pred ---CCCceEEE
Confidence 44445544
No 40
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=56.04 E-value=27 Score=24.54 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=30.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 030287 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (180)
Q Consensus 22 vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~ 53 (180)
.+++|+.|-.++.++|.+.++.+...+.++|+
T Consensus 2 ~~I~I~r~H~Lg~~eAr~~~e~~a~~l~~~~~ 33 (91)
T TIGR02610 2 SSISVERDHSLGPAAARAKAEDLARKLTDRYG 33 (91)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999986
No 41
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=55.50 E-value=57 Score=21.41 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCC---CChhHHHHHHHHHHHHHHHHCCCccEEE
Q 030287 100 VYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPD---TSIRDAMKVAEEAEKEIMKAAPNVFQVS 165 (180)
Q Consensus 100 l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~---~~i~~ah~ia~~le~~i~~~~p~~~~V~ 165 (180)
+|..++. ... ++.+-.+.+. .+ .+.+.+. ++.+ ...+...+++.+++.+|++.+|.
T Consensus 8 IrP~L~~-dGG-----dv~lv~v~~~-~V--~V~l~GaC~gC~~s-~~Tl~~~Ie~~L~~~~~~v~~V~ 66 (68)
T PF01106_consen 8 IRPYLQS-DGG-----DVELVDVDDG-VV--YVRLTGACSGCPSS-DMTLKQGIEQALREAVPEVKRVV 66 (68)
T ss_dssp CHHHHHH-TTE-----EEEEEEEETT-EE--EEEEESSCCSSCCH-HHHHHHHHHHHHHHHSTT-SEEE
T ss_pred hChHHHh-cCC-----cEEEEEecCC-EE--EEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCCCceEE
Confidence 6777766 444 7777777765 33 3444443 4544 57788999999999999988874
No 42
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=53.72 E-value=90 Score=24.20 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=48.3
Q ss_pred CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (180)
Q Consensus 4 gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~ 65 (180)
.+-+|.+-.+--+|...+|-+ .++.+..-+.+.+|...+++++++..|.+..|.|.-+|.
T Consensus 65 ~v~~V~dA~vvVtg~~A~Vgv--~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd 124 (158)
T TIGR02898 65 KVKGVKDATVVITGNYAYVGV--DLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPD 124 (158)
T ss_pred cCCCCceEEEEEECCEEEEEE--EcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHH
Confidence 455777888888999888766 455566667788999999999999899988998888774
No 43
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=52.04 E-value=1e+02 Score=24.48 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=32.2
Q ss_pred eEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 116 RITHHLLHGKILLEVEVSMSP-DTSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 116 ~v~~h~~~~~~~v~~d~~v~~-~~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
++.+-.+.+.-.|.+-+.=.| +|+.+ ...+...+|+.+++.+|++.+|..
T Consensus 128 dielv~v~~~~~v~v~l~GaC~gC~~s-~~Tl~~~ie~~l~~~~p~v~~V~~ 178 (190)
T TIGR03341 128 KVTLVEITDDGVAVLQFGGGCNGCSMV-DVTLKDGVEKTLLERFPELKGVRD 178 (190)
T ss_pred ceEEEEEcCCCEEEEEEeecCCCCcch-HHHHHHHHHHHHHHhCCCcceEEE
Confidence 666666653222322333233 25644 578888999999999999988865
No 44
>PRK09579 multidrug efflux protein; Reviewed
Probab=51.52 E-value=2.6e+02 Score=27.94 Aligned_cols=139 Identities=7% Similarity=0.064 Sum_probs=69.0
Q ss_pred EEEEEEEECCCCCHHHH-HHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHH
Q 030287 21 YLDVHIVVDPFSSVSAA-HGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAV 99 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~ea-H~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 99 (180)
.+.+...-|+. |.++. ..|+..+|++|.. .+++.+++-...+-. ..+. =++++ |. .....+.+++++
T Consensus 44 ~v~V~t~~pGa-spe~vE~~Vt~plE~~L~~-v~gi~~i~S~S~~G~---s~I~-v~f~~-g~-----d~~~a~~~v~~~ 111 (1017)
T PRK09579 44 LITVTTAYPGA-NAETIQGYITQPLQQSLAS-AEGIDYMTSVSRQNF---SIIS-IYARI-GA-----DSDRLFTELLAK 111 (1017)
T ss_pred EEEEEEecCCC-CHHHHHHHHHHHHHHHhcC-CCCceEEEEEecCCe---EEEE-EEEEC-CC-----CHHHHHHHHHHH
Confidence 34556666666 55554 4568888998864 666666542211100 0000 00000 00 122345678888
Q ss_pred HHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHH-HHHHHHHHHHHCCCccEEEEEEecCCCCCCC
Q 030287 100 VYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKV-AEEAEKEIMKAAPNVFQVSVKLRLGRPIPEY 177 (180)
Q Consensus 100 l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~i-a~~le~~i~~~~p~~~~V~ih~e~~~~~~~~ 177 (180)
+..+... +|....-..+.-........+ .+.+. .+.+..+-.+. +.+++..+ +..|++..|.+. |..-+|+
T Consensus 112 v~~v~~~-LP~~~~~P~i~~~~~~~~~v~--~~~~~~~~~~~~~L~~~~~~~i~~~L-~~i~GV~~V~~~---G~~~~ei 184 (1017)
T PRK09579 112 ANEVKNQ-LPQDAEDPVLSKEAADASALM--YISFYSEEMSNPQITDYLSRVIQPKL-ATLPGMAEAEIL---GNQVFAM 184 (1017)
T ss_pred HHHHHHh-CCCCCCCCeEEeCCCCCcceE--EEEEECCCCCHHHHHHHHHHHHHHHh-hcCCCceEEEec---CCCceEE
Confidence 8776555 887433222321112222112 23332 23555555564 45676565 459999999863 5554444
Q ss_pred c
Q 030287 178 Q 178 (180)
Q Consensus 178 ~ 178 (180)
|
T Consensus 185 ~ 185 (1017)
T PRK09579 185 R 185 (1017)
T ss_pred E
Confidence 4
No 45
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=50.15 E-value=50 Score=22.85 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=28.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~ 53 (180)
++|+.|-+++.++|.+.++..-.++.++|+
T Consensus 1 I~I~r~H~Lg~~eAr~~~~~~~~~l~~~~~ 30 (87)
T PF09650_consen 1 IHIERPHSLGREEARRRAEELAEKLAEEYG 30 (87)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999997
No 46
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=49.66 E-value=2.9e+02 Score=27.84 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=67.2
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEE-----------EEEEeeCCCCCCCCcccccccccccCCCCCC
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEV-----------FIHIDPAYFQFSPSTMDQLGLEGCKAHSSNI 89 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v-----------~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (180)
.+.+...-|+--.=.-...+++.+|+++.. .+++..+ ++.++...+.+
T Consensus 43 ~i~V~t~ypGAsae~ve~~Vt~piE~~l~~-i~gi~~i~S~S~~G~s~itv~F~~~~d~d-------------------- 101 (1009)
T COG0841 43 TIVVSATYPGASAETVEDSVTQPIEQQLNG-LDGLDYMSSTSSSGSSSITVTFELGTDPD-------------------- 101 (1009)
T ss_pred EEEEEEecCCCCHHHHHHHHhHHHHHHHhc-CCCccEEEEEEcCCcEEEEEEEeCCCChH--------------------
Confidence 345555556654444456677778888854 4554443 33333222211
Q ss_pred CccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCC-hhHHHHHHHHHHHHHHHHCCCccEEEEE
Q 030287 90 CVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTS-IRDAMKVAEEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 90 ~~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~-i~~ah~ia~~le~~i~~~~p~~~~V~ih 167 (180)
.-..++.+++..+-.. +|.+..-..++.-..++...+.+-+.= .+.+ .+-..-+++.++.++.+ .|++..|.+.
T Consensus 102 -~A~~~V~~kv~~~~~~-LP~~~~~p~v~~~~~~~~~i~~~al~s-~~~~~~~l~~~~~~~l~~~L~~-v~GV~~V~~~ 176 (1009)
T COG0841 102 -TAAVQVQNKIQQAESR-LPSGVQQPGVTVEKSSSNPLLILALTS-TTDSSSDLTDYAASNVRDELSR-VPGVGSVQLF 176 (1009)
T ss_pred -HHHHHHHHHHHHHHhc-CCCccCCCceEeccCCCceEEEEEEEc-CCCChHHHHHHHHHHHHHHHhc-CCCceEEEEc
Confidence 1134788888777656 998644444444444555545444442 2233 22234455556666554 9999999887
No 47
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=49.17 E-value=63 Score=20.08 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=34.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCC-CeeEEEEEEeeCCC
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHP-EVSEVFIHIDPAYF 67 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~-~v~~v~IHidP~~~ 67 (180)
++|.+.+..|.++-.+++..+-+.+.+.++ .-.+++|-+.....
T Consensus 4 i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~ 48 (62)
T PRK00745 4 FHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKR 48 (62)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcCh
Confidence 566767778999999999999999999887 33567777765443
No 48
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=48.97 E-value=2.9e+02 Score=27.71 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=68.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV 100 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 100 (180)
.+.+.+..|+.-+-+-...+...+|++|. ..+++.++.-... ......++ =++++ |. .......++++++
T Consensus 42 ~i~V~~~~pGas~~~ve~~vt~plE~~l~-~v~gv~~i~S~s~--~~g~s~i~-v~f~~-~~-----d~~~a~~~v~~~l 111 (1044)
T TIGR00915 42 AVTVSASYPGASAQTVQDTVTQVIEQQMN-GIDGLRYMSSESD--SDGSMTIT-LTFEQ-GT-----DPDIAQVQVQNKL 111 (1044)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEEEEc--CCCeEEEE-EEEEC-CC-----ChHHHHHHHHHHH
Confidence 45666777666444444779999999986 4666654432210 00000000 00000 00 1222356788888
Q ss_pred HHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHH-HHHHHHHHHHCCCccEEEEE
Q 030287 101 YNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVA-EEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 101 ~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia-~~le~~i~~~~p~~~~V~ih 167 (180)
..+... +|.+.....+..........+.+-+.-+ ...+..+..+.+ .+++..+ ++.|++..|.+.
T Consensus 112 ~~~~~~-LP~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L-~~v~GV~~V~~~ 178 (1044)
T TIGR00915 112 QLATPL-LPQEVQRQGVRVEKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPI-SRLEGVGDVQLF 178 (1044)
T ss_pred HHHHhh-CCCcccCCCcEEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHH-hCCCCceEEEec
Confidence 776656 8864332233333333322233333322 134555655544 5676555 459999999874
No 49
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=48.33 E-value=89 Score=21.56 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=43.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHHHH
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYN 102 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 102 (180)
++.+-=...++-.....+...+.++|...||+ ..-.|.+-|...+.-+. .|.. ...++.|.+.|..
T Consensus 4 Ei~~dK~~~lp~ga~~AL~~EL~kRl~~~fPd-~~~~v~Vr~~s~n~lsv-------~g~~------k~dK~~i~eiLqE 69 (81)
T PRK10597 4 EVTIAKTSPLPAGAIDALAGELSRRIQYAFPD-NEGHVSVRYAAANNLSV-------IGAT------KEDKDRISEILQE 69 (81)
T ss_pred EEEEecCCCCChhHHHHHHHHHHHHHHhhCCC-CCccEEEeecCCCceEe-------cCCC------cchHHHHHHHHHH
Confidence 33333335666677788999999999999997 33124455555443331 1211 1247788888887
Q ss_pred hhhc
Q 030287 103 TLST 106 (180)
Q Consensus 103 ~~~~ 106 (180)
.|..
T Consensus 70 ~we~ 73 (81)
T PRK10597 70 TWES 73 (81)
T ss_pred HHhC
Confidence 7754
No 50
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=45.76 E-value=83 Score=20.50 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=39.3
Q ss_pred CceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 112 MGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 112 ~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
..|.++++|--++...+ ++..+.-++.+ ....+++.+++.+..+..|.+.++
T Consensus 24 ~~I~kv~v~k~~~~w~f--~l~~~~~l~~~----~~~~~~~~l~~~F~~ia~v~~~i~ 75 (76)
T PF14480_consen 24 AEIEKVTVHKKSRKWRF--HLSSPHILPFE----VYQKFEEKLKKQFSHIAKVELIIE 75 (76)
T ss_pred cEEEEEEEEccCCEEEE--EEEeCCcCCHH----HHHHHHHHHHHHhCCcCeEEEEEE
Confidence 36889999988888765 77778777743 566677777777888888888764
No 51
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=44.06 E-value=73 Score=27.15 Aligned_cols=51 Identities=10% Similarity=0.225 Sum_probs=34.4
Q ss_pred EEEEeeCCEEEEEEEEEECCCCCH---HHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 030287 11 LRGRRAGSSLYLDVHIVVDPFSSV---SAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (180)
Q Consensus 11 lr~r~~G~~~~vd~hI~v~~~~sv---~eaH~I~~~ie~~i~~~~~~v~~v~IHi 62 (180)
.++-+.|...++|+|..+|+++.- ++-.+|.+++.+.|... |.-.-+||.+
T Consensus 253 ~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~-g~~rwltvsf 306 (314)
T COG3965 253 VYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSL-GYERWLTVSF 306 (314)
T ss_pred HHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcC-CcCceEEEEE
Confidence 345678999999999999988764 55555666666666543 3224455544
No 52
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=43.90 E-value=75 Score=22.40 Aligned_cols=25 Identities=4% Similarity=0.008 Sum_probs=22.3
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHH
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENV 44 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~i 44 (180)
+++.+++.+|++|+.+++.++..+=
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a~E 26 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKARE 26 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999997763
No 53
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=43.50 E-value=1.1e+02 Score=21.13 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 124 GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 124 ~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
|++.+.+.+..|+ ++. ...+...+++++. ..|++..|.+-+.
T Consensus 37 ~~v~i~l~l~~p~-~~~--~~~l~~~i~~al~-~l~gv~~v~v~i~ 78 (99)
T TIGR02945 37 GHVDIQMTLTAPN-CPV--AGSMPGEVENAVR-AVPGVGSVTVELV 78 (99)
T ss_pred CeEEEEEEECCCC-CCh--HHHHHHHHHHHHH-hCCCCceEEEEEE
Confidence 5555544443332 443 3468888876664 4788887776654
No 54
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=40.26 E-value=92 Score=25.71 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.3
Q ss_pred CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccE
Q 030287 123 HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQ 163 (180)
Q Consensus 123 ~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~ 163 (180)
.|+.-+.+.+.+.+..+..++...+..|-+.+.+..|+...
T Consensus 140 SG~kGlHv~vPl~~~~~~~~~r~fa~~lA~~l~~~~P~~~t 180 (228)
T cd04864 140 TGSRGFHVVVPLDGRGDFDDVRAFAAEAADALAKRDPDLLT 180 (228)
T ss_pred cCCCeEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCchhhh
Confidence 35444444888889999889888998888888888887653
No 55
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=40.03 E-value=4e+02 Score=26.77 Aligned_cols=122 Identities=7% Similarity=0.105 Sum_probs=66.9
Q ss_pred EEEEEEEECCCCCHHH-HHHHHHHHHHHHHhhCCCeeEEE------------EEEeeCCCCCCCCcccccccccccCCCC
Q 030287 21 YLDVHIVVDPFSSVSA-AHGVGENVRHQIHKSHPEVSEVF------------IHIDPAYFQFSPSTMDQLGLEGCKAHSS 87 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~e-aH~I~~~ie~~i~~~~~~v~~v~------------IHidP~~~~~~~~~~~~~~~~~~~~~~~ 87 (180)
.+.+...-|+. |.++ -..++..+|++|.. .+++..+. +.+++.. +
T Consensus 42 ~v~V~t~ypGa-sp~~vE~~Vt~piE~~l~~-v~gi~~i~S~S~~~G~s~I~v~f~~g~----------------d---- 99 (1049)
T PRK15127 42 AVTISASYPGA-DAKTVQDTVTQVIEQNMNG-IDNLMYMSSNSDSTGTVQITLTFESGT----------------D---- 99 (1049)
T ss_pred eEEEEEEeCCC-CHHHHHHHhhHHHHHHhcC-CCCceEEEEEecCCceEEEEEEEECCC----------------C----
Confidence 35556666666 4444 45678888888864 55554443 2222211 1
Q ss_pred CCCccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHH-HHHHHHHHHHCCCccEEE
Q 030287 88 NICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVA-EEAEKEIMKAAPNVFQVS 165 (180)
Q Consensus 88 ~~~~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia-~~le~~i~~~~p~~~~V~ 165 (180)
......++++++..+... +|.......+.....+....+.+-+.-+ .+++..+-.+.+ .+++.++ +..|++..|.
T Consensus 100 -~~~a~~~V~~~i~~~~~~-LP~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~L~~~~~~~l~~~L-~~v~GV~~V~ 176 (1049)
T PRK15127 100 -ADIAQVQVQNKLQLAMPL-LPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPI-SRTSGVGDVQ 176 (1049)
T ss_pred -hHHHHHHHHHHHHHHHhh-CCCcccCCCcEEecCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHH-hcCCCceEEE
Confidence 222356778777765555 8864332333333333322222333321 246666766755 5687665 5599999998
Q ss_pred EE
Q 030287 166 VK 167 (180)
Q Consensus 166 ih 167 (180)
+.
T Consensus 177 ~~ 178 (1049)
T PRK15127 177 LF 178 (1049)
T ss_pred Ec
Confidence 74
No 56
>PRK14647 hypothetical protein; Provisional
Probab=38.38 E-value=1.8e+02 Score=22.30 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 93 DLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 93 ~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
.+.+++.+..++.. .+..+-.+.+.--++...+.+.+-=+.+.++.+...+.+.|...+-...| +.. .-+||.++
T Consensus 7 ~~~i~~~i~~~~~~---~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~d~-i~~-~Y~LEVSS 81 (159)
T PRK14647 7 VDRVTELAEQVLSS---LGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVEDF-IPE-RYTLEVSS 81 (159)
T ss_pred HHHHHHHHHHHHHH---CCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHccccc-CCC-CeEEEEcC
Confidence 45677777777666 35556666666555555555555556779999999999999655543322 222 23567666
Q ss_pred C
Q 030287 173 P 173 (180)
Q Consensus 173 ~ 173 (180)
|
T Consensus 82 P 82 (159)
T PRK14647 82 P 82 (159)
T ss_pred C
Confidence 5
No 57
>PF12984 DUF3868: Domain of unknown function, B. Theta Gene description (DUF3868); InterPro: IPR024480 This domain of unknown function is found in a number of bacterial proteins. The function of the proteins is not known, but the Bacteroides thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to pure culture [, ].
Probab=37.99 E-value=85 Score=22.81 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPF 31 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~ 31 (180)
+.|-+.|.+.++.+.|..++|++.+.+++-
T Consensus 26 y~g~i~v~~~~~~~~gd~L~V~m~idl~~l 55 (115)
T PF12984_consen 26 YTGQIKVTNVSVEKQGDSLHVDMDIDLSGL 55 (115)
T ss_pred cCCcEEEEeeEEEEECCEEEEEEEEEeccc
Confidence 356788899999999999999999998653
No 58
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=37.96 E-value=42 Score=28.49 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=27.6
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKS 51 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~ 51 (180)
++-+|--++|.+++.+|...+.+||..|+..
T Consensus 116 ~~lVHAGi~P~w~l~~a~~~a~eve~~L~~~ 146 (279)
T TIGR00668 116 LVMAHAGITPQWDLQTAKECARDVEAVLSSD 146 (279)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 3456999999999999999999999999853
No 59
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=37.84 E-value=1.1e+02 Score=21.57 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=31.1
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
+.|.+++.+|++++..++.++..+=....++ +-. .-...|+--...
T Consensus 3 flv~m~v~~P~~~~~~~~~~~~a~E~~~a~e-Lq~-~G~~~~lWr~~G 48 (91)
T PF02426_consen 3 FLVRMTVNVPPDMPPEEVDRLKAREKARAQE-LQR-QGKWRHLWRVVG 48 (91)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHHHH-HHH-CCeeeEEEEecC
Confidence 5789999999999999999987764444333 322 334556655443
No 60
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=36.87 E-value=56 Score=21.45 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHHHHhhhc
Q 030287 36 AAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLST 106 (180)
Q Consensus 36 eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 106 (180)
....+...+.++|.+.||+ ..|.|. +...+.-+ ..|.. ...+..|.+.|...|..
T Consensus 5 a~~AL~~EL~kRl~~~yPd-~~v~Vr--~~s~~~l~-------v~g~~------~~~k~~i~~iLqe~we~ 59 (65)
T PF06183_consen 5 ALEALESELTKRLHRQYPD-AEVRVR--PGSANGLS-------VSGGK------KDDKERIEEILQEMWED 59 (65)
T ss_dssp HHHHHHHHHHHHHHHH-SS--EEEEE--EESS-EEE-------EES--------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCC-ceEeee--ecccCccc-------cCCcC------chHHHHHHHHHHHHHhc
Confidence 3456788999999999997 566555 44433222 11211 11266777777666643
No 61
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=36.76 E-value=81 Score=22.01 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=22.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
=+++...+++|+.|..++.+.+.+.+..
T Consensus 40 Lvni~~~~d~~l~ev~~~~~~i~~~~~~ 67 (95)
T PF12327_consen 40 LVNITGGPDLSLSEVNEAMEIIREKADP 67 (95)
T ss_dssp EEEEEE-TTS-HHHHHHHHHHHHHHSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhhc
Confidence 4677888999999999999999888763
No 62
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=36.49 E-value=1.9e+02 Score=21.94 Aligned_cols=77 Identities=8% Similarity=0.094 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 92 DDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 92 ~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
....+++.+..++.. .+..+-.+.++--.+...+.+.+.-+.+.++.+..++.+.+...+-...+ +.. .-.||.+
T Consensus 5 ~~~~i~~~~~~~~~~---~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~-i~~-~Y~LEVS 79 (154)
T PRK00092 5 LEEQLTELIEPVVEA---LGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDP-IPG-AYTLEVS 79 (154)
T ss_pred HHHHHHHHHHHHHHH---CCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccC-CCC-CeEEEEe
Confidence 345677777777766 35567777777655555555555556678999988888888655543222 221 2346666
Q ss_pred CC
Q 030287 172 RP 173 (180)
Q Consensus 172 ~~ 173 (180)
+|
T Consensus 80 SP 81 (154)
T PRK00092 80 SP 81 (154)
T ss_pred CC
Confidence 65
No 63
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=36.26 E-value=1.1e+02 Score=19.01 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=32.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC-CeeEEEEEEeeCCC
Q 030287 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP-EVSEVFIHIDPAYF 67 (180)
Q Consensus 22 vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~-~v~~v~IHidP~~~ 67 (180)
+.+++. +...|.++-.+++..+-+.+.+.++ .-.+++|.++....
T Consensus 3 i~i~i~-~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e~~~ 48 (63)
T TIGR00013 3 VNIYIL-KEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDEMPK 48 (63)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCH
Confidence 344444 3678999999999999999999883 12467777765443
No 64
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=35.92 E-value=1.5e+02 Score=23.87 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=33.9
Q ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 030287 18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (180)
Q Consensus 18 ~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHi 62 (180)
.++.=++-|.+|.++|.++--+++..+-+......+-+.++.||-
T Consensus 65 a~~are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~ 109 (216)
T PF03389_consen 65 ARLAREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHD 109 (216)
T ss_dssp S--EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEE
T ss_pred CeEeeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEec
Confidence 366778999999999999999999999999777777778999996
No 65
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=33.40 E-value=2.7e+02 Score=23.43 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=34.3
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEI 154 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i 154 (180)
+.....+|+||.. |.+...--+.+.++.+.++-.+....+|..+
T Consensus 209 G~k~tG~TvH~V~e~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~~~ 257 (280)
T TIGR00655 209 GVKIIGATAHYVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEKVV 257 (280)
T ss_pred CCCeEEEEEEEEcCCCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 5567789999997 5688888899999999887666666666654
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.03 E-value=2.9e+02 Score=23.45 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=34.4
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIM 155 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~ 155 (180)
+.....+|+||.. |.+...-.+.+.++.+.++-.+....+|.+++
T Consensus 218 G~k~tG~TvH~v~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~~~l 267 (289)
T PRK13010 218 GVKLIGATAHFVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVECLTL 267 (289)
T ss_pred CCCeEEEEEEEEcCCCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 5668899999997 56888889999999987776666666665443
No 67
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=32.93 E-value=1.5e+02 Score=23.98 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=32.4
Q ss_pred CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEE
Q 030287 124 GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKL 168 (180)
Q Consensus 124 ~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~ 168 (180)
+++.=.|.+.+|.+++.++-.+++.++-++.....+-+..+.||-
T Consensus 65 a~~are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~ 109 (216)
T PF03389_consen 65 ARLAREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHD 109 (216)
T ss_dssp S--EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEE
T ss_pred CeEeeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEec
Confidence 556778899999999999999999999888766677788999995
No 68
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=32.87 E-value=1.4e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=27.9
Q ss_pred EEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 030287 13 GRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIH 49 (180)
Q Consensus 13 ~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~ 49 (180)
+|.+|..-.+-+-++.+ +..+++++.+.+...|+
T Consensus 40 vR~SgTEP~iRv~~Ea~---~~~~~~~~~~~i~~~ik 73 (73)
T PF00408_consen 40 VRPSGTEPKIRVYVEAP---DEEELEEIAEEIAEAIK 73 (73)
T ss_dssp EEEESSSSEEEEEEEES---SHHHHHHHHHHHHHHHH
T ss_pred EECCCCCceEEEEEEeC---CHHHHHHHHHHHHHhhC
Confidence 79999866667777766 89999999999988774
No 69
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.74 E-value=1.4e+02 Score=19.32 Aligned_cols=50 Identities=10% Similarity=0.288 Sum_probs=34.6
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHH
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAE 151 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le 151 (180)
+-+.+..++++ .+..+.+++..-+++...+.+.+.+|.+.++. ++.+.|+
T Consensus 12 iv~~vt~~la~---~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~---~l~~~l~ 61 (75)
T cd04870 12 LTSALTEVLAA---HGVRILDVGQAVIHGRLSLGILVQIPDSADSE---ALLKDLL 61 (75)
T ss_pred HHHHHHHHHHH---CCCCEEecccEEEcCeeEEEEEEEcCCCCCHH---HHHHHHH
Confidence 44444455556 25678888777777888888899998876644 4666664
No 70
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=32.69 E-value=1.7e+02 Score=23.13 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=38.1
Q ss_pred CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHHhhCC--CeeEEEEEEee
Q 030287 18 SSLYLDVHIVVDP----FSSVSAAHGVGENVRHQIHKSHP--EVSEVFIHIDP 64 (180)
Q Consensus 18 ~~~~vd~hI~v~~----~~sv~eaH~I~~~ie~~i~~~~~--~v~~v~IHidP 64 (180)
..+.+++-|..++ .++-++..+..+..-+-+.+.|| ++..++||+|-
T Consensus 77 av~~~e~iit~~~e~~~~~~~e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE 129 (196)
T PF01076_consen 77 AVLAIEFIITASPEFFNDLDPEQQKRWFEDSLEWLQERYGNENIVSAVVHLDE 129 (196)
T ss_pred ceeEEEEEEeCChHHhcchhhHHHHHHHHHHHHHHHHHCCchhEEEEEEECCC
Confidence 3567788888876 56788888889999999999999 66788899873
No 71
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=32.69 E-value=2.2e+02 Score=21.64 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=51.9
Q ss_pred CccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 90 CVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 90 ~~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
...+.++.+.+...+.+ .+. |...++--.++...|-+++... - ....++..++++.+++..|.+..|.|--+
T Consensus 70 ~~~~~~~a~~i~~~v~~-~~~---V~~A~vvv~~~~a~Vav~~~~~--~--~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D 141 (177)
T PF09580_consen 70 NNDRQQLADRIANRVKK-VPG---VEDATVVVTDDNAYVAVDLDFN--R--FNTKKIKKKVEKAVKSADPRIYNVYVSTD 141 (177)
T ss_pred cchHHHHHHHHHHHHhc-CCC---ceEEEEEEECCEEEEEEEeccc--c--cchhHHHHHHHHHHHHhCCCccEEEEEcC
Confidence 33455666666666666 555 7788887788888887676622 2 23468999999999999999999988644
No 72
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=32.63 E-value=2.6e+02 Score=22.30 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=30.5
Q ss_pred eEEEEEeCCeEEEEEEEEeCCC-CChhHHHHHHHHHHHHHHHHCC-CccEEEE
Q 030287 116 RITHHLLHGKILLEVEVSMSPD-TSIRDAMKVAEEAEKEIMKAAP-NVFQVSV 166 (180)
Q Consensus 116 ~v~~h~~~~~~~v~~d~~v~~~-~~i~~ah~ia~~le~~i~~~~p-~~~~V~i 166 (180)
++.+-.+.+.-.|.+-+.=.|. |+.+ ...+...+|+.+++.+| ++.+|.-
T Consensus 129 dielv~v~~~~~v~v~l~GaC~gC~~s-~~Tl~~~Ie~~l~~~~p~~i~~v~~ 180 (192)
T PRK11190 129 RVSLMEITEDGYAILQFGGGCNGCSMV-DVTLKEGIEKQLLNEFPGELKGVRD 180 (192)
T ss_pred cEEEEEEcCCCEEEEEEeecCCCCcch-HHHHHHHHHHHHHHhCCHhhceEEE
Confidence 5666666532223223333333 5644 47788899999999999 7776653
No 73
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=32.36 E-value=1.2e+02 Score=18.35 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=32.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCC-CeeEEEEEEeeCCC
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHP-EVSEVFIHIDPAYF 67 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~-~v~~v~IHidP~~~ 67 (180)
++|.+....|.++-.++++.+-+.+.+.++ .-.+++|.++....
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~ 47 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPK 47 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCc
Confidence 456666666899999999999999998772 12577777765443
No 74
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=32.09 E-value=1.3e+02 Score=18.78 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=33.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEeeC
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPA 65 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~-v~~v~IHidP~ 65 (180)
++|.+.+..|-++-.++++.+-+.+.+.++. ...++|-+.-.
T Consensus 4 i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev 46 (60)
T PRK02289 4 VRIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVFINDM 46 (60)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEe
Confidence 5778888889999999999999999998874 34666666543
No 75
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=31.66 E-value=1.4e+02 Score=29.74 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=28.6
Q ss_pred EEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEE
Q 030287 127 LLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKL 168 (180)
Q Consensus 127 ~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~ 168 (180)
.+.+++.+|++.++++..+++.++|+.++ +.|++..+....
T Consensus 560 ~~~v~v~lp~Gtsle~t~~~~~~ve~~L~-~~p~V~~v~s~v 600 (1021)
T PF00873_consen 560 EFYVSVELPPGTSLEETDAIVKQVEDILK-EDPEVKSVSSRV 600 (1021)
T ss_dssp EEEEEEEESTTC-HHHHHHHHHHHHHHHH-TTTTEEEEEEEE
T ss_pred ceEEEEeeccCchHHHHHHHHHHHHHHHH-hhhhhhccceEe
Confidence 34557777888888888888888877555 577777776654
No 76
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=31.42 E-value=2.8e+02 Score=23.42 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=33.7
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEI 154 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i 154 (180)
+.....+|+||.. |.+...-.+.+.++.+.++-.+-...+|.++
T Consensus 214 G~~~tG~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~~~ 262 (286)
T PRK13011 214 GVKLIGATAHYVTDDLDEGPIIEQDVERVDHAYSPEDLVAKGRDVECLT 262 (286)
T ss_pred CCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 5567899999997 5688888899999998777666666666543
No 77
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=31.25 E-value=5.6e+02 Score=25.78 Aligned_cols=126 Identities=10% Similarity=0.134 Sum_probs=63.6
Q ss_pred EECCCCCHHH-HHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHHHHhhh
Q 030287 27 VVDPFSSVSA-AHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVYNTLS 105 (180)
Q Consensus 27 ~v~~~~sv~e-aH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 105 (180)
..-+..|.++ -..+...+|++|.. .+++.++.-..- +..+.-.=++++ |++ ......++++++..+..
T Consensus 58 t~~pGas~~~vE~~Vt~piE~~l~~-v~gv~~i~S~S~----~G~s~i~v~f~~-g~d-----~~~a~~ev~~~i~~~~~ 126 (1040)
T PRK10503 58 TLYPGASPDVMTSAVTAPLERQFGQ-MSGLKQMSSQSS----GGASVITLQFQL-TLP-----LDVAEQEVQAAINAATN 126 (1040)
T ss_pred EEcCCCCHHHHHHHHHHHHHHHhcC-CCCccEEEEEec----CCeEEEEEEEEC-CCC-----hHHHHHHHHHHHHHHHH
Confidence 3445557777 45589999999974 666666532111 000000000000 011 22235678877776655
Q ss_pred ccCCCCCceeeEEEEEeC--CeEEEEEEEEeCCCCChhHHHHHH-HHHHHHHHHHCCCccEEEEE
Q 030287 106 TKFPEKMGVERITHHLLH--GKILLEVEVSMSPDTSIRDAMKVA-EEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 106 ~~~~~~~~v~~v~~h~~~--~~~~v~~d~~v~~~~~i~~ah~ia-~~le~~i~~~~p~~~~V~ih 167 (180)
. +|....-.-+.. .++ ..-.+.+-+.- .+.+..+..+.+ ++++.++ ++.|++..|.+.
T Consensus 127 ~-LP~~~~~~p~~~-~~~~~~~pv~~~~l~~-~~~~~~~L~~~~~~~l~~~L-~~i~gV~~V~~~ 187 (1040)
T PRK10503 127 L-LPSDLPNPPVYS-KVNPADPPIMTLAVTS-TAMPMTQVEDMVETRVAQKI-SQVSGVGLVTLS 187 (1040)
T ss_pred h-CCCccCCCCEEE-EeCCCCCceEEEEEEc-CCCCHHHHHHHHHHHHHHHh-cCCCCceEEEec
Confidence 5 885422111111 233 22233333322 245655666655 5687665 459999998765
No 78
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=31.03 E-value=1.6e+02 Score=20.51 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=27.0
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~ 53 (180)
.+.+++.+|+.-|+.+=-.+...+..+++++|+
T Consensus 4 ~l~l~l~lp~~~SLKeKR~vvksl~~klr~rfn 36 (90)
T PF04456_consen 4 VLRLELRLPGAHSLKEKRQVVKSLIDKLRNRFN 36 (90)
T ss_dssp EEEEEEE----SSHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEEeccccchhHhHHHHHHHHHHHHhhCC
Confidence 467899999999999999999999999999997
No 79
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=30.36 E-value=1.4e+02 Score=23.83 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=29.3
Q ss_pred EEEeeCC-EEEEEEEEEECCCCCH---HHHHHHHHHHHHH----HHhhCCCeeEEEEEEeeCCC
Q 030287 12 RGRRAGS-SLYLDVHIVVDPFSSV---SAAHGVGENVRHQ----IHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 12 r~r~~G~-~~~vd~hI~v~~~~sv---~eaH~I~~~ie~~----i~~~~~~v~~v~IHidP~~~ 67 (180)
+++..|. .+.++ +...+|. ...+.+.+.+++. |.+-.|....++|++||...
T Consensus 2 ~i~~~Gd~allv~----~~~~~~~~~~~~v~~l~~~l~~~~~~gi~e~vp~~~sllv~fdp~~~ 61 (201)
T smart00796 2 RIRPAGDRALLVE----FGDEIDLALNRRVLALARALRAAPLPGVVELVPGYRSLLVHFDPLVI 61 (201)
T ss_pred EEEEcCCcEEEEE----ECCcCCHHHHHHHHHHHHHHHhcCCCCeEEccccceEEEEEEcCCCC
Confidence 5677787 45544 4555543 4455555555543 33344544567888887543
No 80
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=2.7e+02 Score=21.48 Aligned_cols=76 Identities=8% Similarity=0.107 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 93 DLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 93 ~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
...+.+.+..++.. .+..+-.+.+.-.+....+.+.+.=++++++.|..++.+++...+-...| +. -.-+||.++
T Consensus 7 ~~~v~~liep~~~~---lG~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~edp-i~-~~Y~LEVSS 81 (153)
T COG0779 7 TEKVTELIEPVVES---LGFELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDVEDP-IE-GAYFLEVSS 81 (153)
T ss_pred HHHHHHHHHHhHhh---cCcEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCc-cc-ccEEEEeeC
Confidence 34566666655555 24455555555555455554444444889999999999988655543444 33 455677766
Q ss_pred C
Q 030287 173 P 173 (180)
Q Consensus 173 ~ 173 (180)
|
T Consensus 82 P 82 (153)
T COG0779 82 P 82 (153)
T ss_pred C
Confidence 5
No 81
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.82 E-value=3.3e+02 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEI 154 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i 154 (180)
+.....+|+||.+ |.+...-.+.+.++.+.++-.+....+|.++
T Consensus 214 G~~~tG~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~~~ 262 (286)
T PRK06027 214 GVKLIGATAHYVTADLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEKQV 262 (286)
T ss_pred CCCeEEEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 5667899999997 5688888899988888777555555555543
No 82
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=28.65 E-value=99 Score=25.75 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.9
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
-++-+|-.++|.+++.+|...+.++|..|+.
T Consensus 113 ~~l~vHAGi~p~w~~~~~~~~a~eve~~l~~ 143 (257)
T cd07422 113 GILMVHAGIPPQWSIEQALKLAREVEAALRG 143 (257)
T ss_pred cEEEEccCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4566799999999999999999999999985
No 83
>COG3518 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=87 Score=24.35 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCC
Q 030287 141 RDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPI 174 (180)
Q Consensus 141 ~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~ 174 (180)
.+.+.|++.|++.|.+--|-+..|.+.+.++..-
T Consensus 84 ~~~~~i~r~I~~~Ie~fEPRL~~V~v~~~~~~~~ 117 (157)
T COG3518 84 RDSHQIARAIRAAIERFEPRLSRVEVQLLPGRGD 117 (157)
T ss_pred ccHHHHHHHHHHHHHHhCchhhheeeeeccCCCC
Confidence 4678999999999999999999999999998876
No 84
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=27.36 E-value=3.1e+02 Score=21.53 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=33.0
Q ss_pred eeeEEEEEe-CCeEEEEEEEEeCC-CCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 114 VERITHHLL-HGKILLEVEVSMSP-DTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 114 v~~v~~h~~-~~~~~v~~d~~v~~-~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
|..+.+-.. +++-.+.|.+.+++ .++.. ..+...+++++.. .|++..|.|.+..+
T Consensus 100 V~~I~Id~~~~~~~~V~I~mtLt~p~c~~~--~~L~~dV~~aL~~-l~gV~~V~V~l~~d 156 (174)
T TIGR03406 100 VYGCRVEKLGEGQFRVDIEMTLTAPGCGMG--PVLVEDVEDKVLA-VPNVDEVEVELVFD 156 (174)
T ss_pred eEEEEEecccCCCCEEEEEEEeCCCCCcHH--HHHHHHHHHHHHh-CCCceeEEEEEEec
Confidence 455555432 13112445666663 35643 4788888877654 88999888876554
No 85
>COG3285 Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
Probab=27.19 E-value=3.7e+02 Score=23.17 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=32.6
Q ss_pred EeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCcc
Q 030287 121 LLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVF 162 (180)
Q Consensus 121 ~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~ 162 (180)
-+.|+.-+.+.+.+++.++..+++..+..+-+.+.+..|+..
T Consensus 164 KTSGGKG~Hv~~PL~~~~~w~e~k~fa~~va~~la~~~Pd~~ 205 (299)
T COG3285 164 KTSGGKGLHVYVPLAPKATWEEVKQFAKAVAQQLARAAPDLF 205 (299)
T ss_pred eccCCCeeEEEEecCCcCCcHHHHHHHHHHHHHHHHhChHHH
Confidence 344554444488888999999999999999888888888653
No 86
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=25.91 E-value=3.4e+02 Score=21.53 Aligned_cols=121 Identities=5% Similarity=0.031 Sum_probs=68.2
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCc--ccccccccccC
Q 030287 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPST--MDQLGLEGCKA 84 (180)
Q Consensus 7 ~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~--~~~~~~~~~~~ 84 (180)
++-+.|....|...-+-+-+..++. -...++..|.. +.....+.+++.+.......-. +-.+...|.|
T Consensus 35 NI~ds~~t~lgg~Fa~i~lvs~~~~--------~~~~le~~L~~-l~~~~~L~i~v~~~~~~~~~~~~~~~~v~v~G~D- 104 (190)
T PRK11589 35 NIEDSRLAMLGEEFTFIMLLSGSWN--------AITLIESTLPL-KGAELDLLIVMKRTTARPRPAMPATVWVQVEVAD- 104 (190)
T ss_pred CeeehhhHhhCCceEEEEEEeCChh--------HHHHHHHHHHh-hhhhcCeEEEEEeccccccccCCceEEEEEEECC-
Confidence 5677888888886666666655543 23455666654 2222356677755322111100 0112333433
Q ss_pred CCCCCCccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCC------eEEEEEEEEeCCCCChhHHHHHHHHHH
Q 030287 85 HSSNICVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHG------KILLEVEVSMSPDTSIRDAMKVAEEAE 151 (180)
Q Consensus 85 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~------~~~v~~d~~v~~~~~i~~ah~ia~~le 151 (180)
+.=|-..+..++++ .+..+.+++.+..+. -..+.+.+.+|.++.+.+ +.++|+
T Consensus 105 --------rPGIV~~vT~~la~---~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~---L~~~l~ 163 (190)
T PRK11589 105 --------SPHLIERFTALFDS---HHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAAN---IEQAFK 163 (190)
T ss_pred --------CCCHHHHHHHHHHH---cCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHH---HHHHHH
Confidence 22344455555566 366788888776652 377778999999988654 566664
No 87
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=25.87 E-value=6.9e+02 Score=25.09 Aligned_cols=131 Identities=10% Similarity=0.175 Sum_probs=64.5
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccc-cccCCCCCCCccHHHHHH
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLE-GCKAHSSNICVDDLDIDA 98 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 98 (180)
-.+.+.+.-|+.-+-+--..++..+|+++.. .+++.++.-... .....++ .+++ |.+ ....+.++++
T Consensus 45 ~~i~V~~~~pGas~~~ve~~vt~piE~~l~~-v~gv~~v~S~s~---~g~s~i~---v~f~~~~d-----~~~a~~~v~~ 112 (1051)
T TIGR00914 45 VQVQINTSAPGYSPLEVEQRVTYPIETAMAG-LPGLETTRSLSR---YGLSQVT---VIFKDGTD-----LYFARQLVNE 112 (1051)
T ss_pred cEEEEEEecCCCCHHHHHHHcCHHHHHHhcC-CCCeeEEEEEcc---CceEEEE---EEEeCCCC-----HHHHHHHHHH
Confidence 3455666667775555558888999999974 777776642110 0000000 0000 111 2223567777
Q ss_pred HHHHhhhccCCCCCceeeEEEEEeCCe--EEEEEEEEeCC--------CCChhHHHHHHHH-HHHHHHHHCCCccEEEEE
Q 030287 99 VVYNTLSTKFPEKMGVERITHHLLHGK--ILLEVEVSMSP--------DTSIRDAMKVAEE-AEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 99 ~l~~~~~~~~~~~~~v~~v~~h~~~~~--~~v~~d~~v~~--------~~~i~~ah~ia~~-le~~i~~~~p~~~~V~ih 167 (180)
.+..+... +|.... ..+. ....+ ..+.+.+.-.+ ..+..+-.+++.+ ++.+ +++.|++..|.+.
T Consensus 113 ~v~~~~~~-LP~~~~-~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-L~~i~GV~~V~~~ 187 (1051)
T TIGR00914 113 RLQQARDN-LPEGVS-PEMG--PISTGLGEIFLYTVEAEEGARKKDGGAYTLTDLRTIQDWIIRPQ-LRTVPGVAEVNSI 187 (1051)
T ss_pred HHHHHHhh-CCCCCC-CCcC--CCCCCcceeEEEEecccccccccccCCCCHHHHHHHHHHHHHHH-HhcCCCceEeeec
Confidence 77766545 775422 1111 11111 12222332111 1333344555654 5544 4559999999884
No 88
>PF10646 Germane: Sporulation and spore germination; InterPro: IPR019606 The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. It is also found in lipoprotein LpqB. The domain is present in a number of different bacterial species both alone and in association with other domains such as Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.
Probab=25.73 E-value=2.3e+02 Score=19.63 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 141 RDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 141 ~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
.....+..+|..-+.++++++.+|.+.++
T Consensus 81 ~~~~~~~~~i~~Tl~~~~~~v~~V~i~vd 109 (117)
T PF10646_consen 81 SQEALLLAQIVNTLTEQFPGVKKVQILVD 109 (117)
T ss_pred HHHHHHHHHHHHHHHHhcCCccEEEEEEC
Confidence 33556777776666668999999998753
No 89
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.74 E-value=1.6e+02 Score=21.57 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287 32 SSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (180)
Q Consensus 32 ~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~ 66 (180)
.|..-|..+...|++.|+- .|-+.++-|+|++..
T Consensus 34 vs~~~a~~le~aI~esi~~-QP~v~daeV~Id~~~ 67 (116)
T COG2098 34 VSPGTAESLEKAIEESIKV-QPFVEDAEVKIDRDK 67 (116)
T ss_pred CCccchHHHHHHHHHHHhc-CCceeeEEEEecccc
Confidence 4556677777888888874 688999999999873
No 90
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=23.53 E-value=2.3e+02 Score=19.23 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=19.2
Q ss_pred EEEEeeCCEEEEEEEEEECCCCCHHHHHH
Q 030287 11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHG 39 (180)
Q Consensus 11 lr~r~~G~~~~vd~hI~v~~~~sv~eaH~ 39 (180)
|.++..... ..++.+++++++|+.+.-+
T Consensus 4 l~IK~~~~~-~~~~~ve~~~~~TV~~lK~ 31 (79)
T cd01790 4 LLIKSPNQK-YEDQTVSCFLNWTVGELKT 31 (79)
T ss_pred EEEECCCCC-eEEEEEecCCcChHHHHHH
Confidence 445554443 4578889999999987653
No 91
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.85 E-value=4.1e+02 Score=21.49 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=28.1
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKE 153 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~ 153 (180)
+..++..|+||.. |.+...--+++-++-|.+.-++-....|..
T Consensus 128 G~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh~ 175 (200)
T COG0299 128 GVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEHR 175 (200)
T ss_pred CCCccCcEEEEEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHHH
Confidence 6778899999987 446666666776777765544444444433
No 92
>PRK14635 hypothetical protein; Provisional
Probab=22.75 E-value=3.6e+02 Score=20.73 Aligned_cols=76 Identities=14% Similarity=0.255 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEe----CCCCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 91 VDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSM----SPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 91 ~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v----~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
|+.+.+++.+..++.. +..+-.+.+.--++...+.+.+-= +.+.++.+..++.+.|...+-+..| . -.-
T Consensus 3 ~~~~~i~~l~~~~~~~----g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d~-~--~~Y 75 (162)
T PRK14635 3 VSEEEISEILDRVLAL----PVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERISP-D--LDF 75 (162)
T ss_pred CcHHHHHHHHHHHHCC----CCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCCC-C--CCe
Confidence 3456788777766532 445556665555555444434432 2458999999999999655543344 2 245
Q ss_pred EEecCCC
Q 030287 167 KLRLGRP 173 (180)
Q Consensus 167 h~e~~~~ 173 (180)
.||.++|
T Consensus 76 ~LEVSSP 82 (162)
T PRK14635 76 TLKVSSA 82 (162)
T ss_pred EEEEcCC
Confidence 5666655
No 93
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=22.69 E-value=3.5e+02 Score=20.55 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=30.9
Q ss_pred eeeEEEEEeCCeEEEEEEEEeCCC-CChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 114 VERITHHLLHGKILLEVEVSMSPD-TSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 114 v~~v~~h~~~~~~~v~~d~~v~~~-~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
|..+++. ++++.| .+.+++. ++. ...+..++++++.. . ++..|.|.+.+.
T Consensus 17 Vr~V~v~--gd~V~V--tIt~Ty~gcpa--~e~L~~~I~~aL~~-~-Gv~~V~V~i~~~ 67 (146)
T TIGR02159 17 VREVDVD--GGGVVV--KFTPTYSGCPA--LEVIRQDIRDAVRA-L-GVEVVEVSTSLD 67 (146)
T ss_pred eeEEEEE--CCEEEE--EEEeCCCCCch--HHHHHHHHHHHHHh-c-CCCeEEEeEeeC
Confidence 4455553 455554 5555533 453 34788889888776 4 677777776654
No 94
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.22 E-value=2e+02 Score=19.54 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=38.0
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE--eeCC
Q 030287 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI--DPAY 66 (180)
Q Consensus 7 ~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHi--dP~~ 66 (180)
++.++.+.+....+.+.++..-|+-+-=..+..| +.+.+.|.+.|+ +....|.+ ++..
T Consensus 19 gis~IeI~Rt~~~i~I~I~tarPg~vIG~~G~~i-~~L~~~L~k~~~-~~~~~i~v~~~~v~ 78 (81)
T cd02413 19 GYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRI-RELTSLVQKRFN-FPEGSVELYAEKVA 78 (81)
T ss_pred CeeeEEEEEcCCeEEEEEEeCCCceEECCCchhH-HHHHHHHHHHhC-CCCCeEEEEEEEcc
Confidence 6778888888889999999998887644444443 556666666553 34444444 6543
No 95
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.08 E-value=2.1e+02 Score=17.84 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=32.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEEEeeCCC
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYF 67 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v-~~v~IHidP~~~ 67 (180)
++|.+....|.++-.+++..+-+.+.+.++-- .++.|-+.....
T Consensus 4 v~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (64)
T PRK01964 4 VQIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPS 48 (64)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcCh
Confidence 46666667799999999999999999877521 467777765543
No 96
>PRK14641 hypothetical protein; Provisional
Probab=21.81 E-value=3.7e+02 Score=21.08 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=37.1
Q ss_pred eeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 6 ~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
..+-++.....|....+.+.|.-++.+|+.+.-.++..|...|-.
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD~ 68 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLEE 68 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhCc
Confidence 346788888888877778877777889999999999998888864
No 97
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=21.77 E-value=2.8e+02 Score=19.19 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=42.0
Q ss_pred CccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 90 CVDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 90 ~~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
+-.+..+-+.+.+.+.++|+ .+|-.+--|+.-....+.|-+.= .+. ..+.++.+++++.+ +..|++.-+.++.|
T Consensus 17 LKeKR~vvksl~~klr~rfn--vSvaEv~~~D~~q~a~lg~a~vs-~~~--~~~~~~l~~v~~~i-e~~~~~ei~~~~~E 90 (90)
T PF04456_consen 17 LKEKRQVVKSLIDKLRNRFN--VSVAEVGHQDSWQRAVLGFAVVS-NSR--AHAEQILDKVERFI-EENPDAEILDFEIE 90 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---EEEEEE-TT-SSEEEEEEEEEE-S-H--HHHHHHHHHHHHHH-HHS-SSEEEEE---
T ss_pred hhHhHHHHHHHHHHHHhhCC--eEEEEecCCCcccEEEEEEEEEE-CCH--HHHHHHHHHHHHHH-HhCCCEEEEEEecC
Confidence 33344555555555555563 35666666666677777666542 222 35788999998776 66888887777654
No 98
>PLN02828 formyltetrahydrofolate deformylase
Probab=21.74 E-value=4.9e+02 Score=21.90 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEIM 155 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~ 155 (180)
+.....+|+||.. |.+...--+.+.++.+..+-.+....+|..++
T Consensus 196 Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~~~l 245 (268)
T PLN02828 196 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCL 245 (268)
T ss_pred CCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 5667899999987 56888888999999998776565666665543
No 99
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=21.59 E-value=1.2e+02 Score=19.57 Aligned_cols=22 Identities=9% Similarity=-0.083 Sum_probs=19.1
Q ss_pred EECCCCCHHHHHHHHHHHHHHH
Q 030287 27 VVDPFSSVSAAHGVGENVRHQI 48 (180)
Q Consensus 27 ~v~~~~sv~eaH~I~~~ie~~i 48 (180)
.++.++|-.+|.+.++.++++.
T Consensus 34 ~~~~~LtkaeAs~rId~L~~~~ 55 (57)
T PF11272_consen 34 PFPDDLTKAEASERIDELQAQT 55 (57)
T ss_pred CCCCcccHHHHHHHHHHHHHHh
Confidence 5789999999999999988764
No 100
>PRK14630 hypothetical protein; Provisional
Probab=21.42 E-value=3.6e+02 Score=20.31 Aligned_cols=59 Identities=3% Similarity=0.000 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 030287 93 DLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEI 154 (180)
Q Consensus 93 ~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i 154 (180)
.+++++.+..++.. .+..+-.+.+.--++...+.+.+.=+.+.++.|...+.+++...+
T Consensus 7 ~~~i~~li~~~~~~---~G~eLvdve~~~~~~~~~lrV~Id~~~gV~idDC~~vSr~i~~~l 65 (143)
T PRK14630 7 NSEVYNLIKNVTDR---LGIEIIEINTFRNRNEGKIQIVLYKKDSFGVDTLCDLHKMILLIL 65 (143)
T ss_pred HHHHHHHHHHHHHH---cCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45677777777766 355555666544444444555555456799999999999996554
No 101
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=20.71 E-value=4.3e+02 Score=23.26 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=44.2
Q ss_pred CCCceeeeeEEEEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287 2 SLSLQGCHRLRGRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~ 65 (180)
.+||.++.+-|.+..++ .+...+|+.|.++..- +.+...+.+.+.. .+ |.+++|.++-.
T Consensus 288 ~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade---~~vl~~V~~~~~~-~g-V~~ltvQv~~~ 347 (354)
T KOG1484|consen 288 LDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADE---QSVLAHVTRKLED-AG-VKDLTVQVEKE 347 (354)
T ss_pred cccceeeccCceeeccCCceEEEEEEEEecCcch---hHHHHHHHHHHHh-cc-eeEEEEEEecc
Confidence 47999999999999998 6899999999988543 3444455555543 33 78889887643
No 102
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=20.20 E-value=2.8e+02 Score=18.58 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=23.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
.+.|---+.||+.+|-..+..+...+.+
T Consensus 49 ~~~lG~~p~~sl~~AR~~a~~~~~~~~~ 76 (89)
T PF13356_consen 49 RITLGRYPELSLAEAREKARELRALVRQ 76 (89)
T ss_dssp EEEEEECTTS-HHHHHHHHHHHHHHHCT
T ss_pred EeccCCCccCCHHHHHHHHHHHHHHHHc
Confidence 4567778999999999999999988875
No 103
>PRK14637 hypothetical protein; Provisional
Probab=20.08 E-value=4e+02 Score=20.29 Aligned_cols=44 Identities=9% Similarity=-0.061 Sum_probs=37.1
Q ss_pred eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 7 ~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
.+-++.....|....+.+.|.-++.+|+.+.-+++..|...|-.
T Consensus 24 eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 24 KLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEA 67 (151)
T ss_pred EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 56788888888887888888778889999999999999888764
Done!