Query 030287
Match_columns 180
No_of_seqs 216 out of 1096
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zzt_A Putative uncharacterize 99.6 2E-15 6.9E-20 108.8 10.1 66 2-67 22-87 (107)
2 3byp_A CZRB protein; membrane 99.6 6.2E-15 2.1E-19 103.3 10.6 62 3-65 25-86 (94)
3 3j1z_P YIIP, cation efflux fam 99.4 1.3E-13 4.6E-18 115.9 7.5 66 2-68 227-292 (306)
4 3h90_A Ferrous-iron efflux pum 99.4 1.2E-12 4.2E-17 108.6 10.5 65 2-67 218-282 (283)
5 3byp_A CZRB protein; membrane 99.0 6.7E-09 2.3E-13 72.2 11.2 76 96-173 11-88 (94)
6 2zzt_A Putative uncharacterize 99.0 7.4E-09 2.5E-13 74.2 11.2 77 96-173 11-87 (107)
7 3h90_A Ferrous-iron efflux pum 98.6 7.2E-07 2.5E-11 73.6 12.0 75 96-172 207-281 (283)
8 3j1z_P YIIP, cation efflux fam 98.6 1.7E-07 5.7E-12 78.6 8.2 81 96-178 216-296 (306)
9 2z51_A NIFU-like protein 2, ch 90.3 3.1 0.0001 31.1 9.8 100 35-165 50-152 (154)
10 4dx5_A Acriflavine resistance 85.4 18 0.00063 34.3 14.2 147 21-178 571-728 (1057)
11 2v50_A Multidrug resistance pr 81.8 29 0.00099 33.0 13.9 147 21-179 571-728 (1052)
12 3cq1_A Putative uncharacterize 76.1 11 0.00036 25.6 6.8 49 113-168 32-81 (103)
13 3ne5_A Cation efflux system pr 75.4 10 0.00036 36.0 8.7 140 21-179 53-196 (1054)
14 3lno_A Putative uncharacterize 73.8 7.6 0.00026 26.8 5.6 54 114-171 35-88 (108)
15 4dx5_A Acriflavine resistance 71.0 6.9 0.00024 37.3 6.3 140 21-178 42-185 (1057)
16 1uwd_A Hypothetical protein TM 61.2 34 0.0012 22.9 7.6 69 93-168 8-82 (103)
17 2jvf_A De novo protein M7; tet 55.1 16 0.00055 23.9 3.9 56 116-174 7-62 (96)
18 1xhj_A Nitrogen fixation prote 51.1 52 0.0018 22.0 8.8 60 100-167 19-79 (88)
19 3ne5_A Cation efflux system pr 50.4 1.7E+02 0.0058 27.7 12.3 144 22-178 577-732 (1054)
20 2ns6_A Mobilization protein A; 48.9 44 0.0015 25.4 6.2 46 17-62 67-112 (185)
21 2ns6_A Mobilization protein A; 43.8 58 0.002 24.6 6.2 46 123-168 67-112 (185)
22 3jtz_A Integrase; four strande 41.5 70 0.0024 21.0 5.6 28 23-50 50-77 (88)
23 1mli_A Muconolactone isomerase 38.1 64 0.0022 22.0 5.0 47 20-68 3-49 (96)
24 1th5_A NIFU1; iron-sulfur clus 35.5 17 0.0006 23.5 1.7 33 131-165 39-71 (74)
25 1ghh_A DINI, DNA-damage-induci 35.1 72 0.0025 21.0 4.7 70 22-106 3-73 (81)
26 3ju0_A Phage integrase; four s 34.5 97 0.0033 21.2 5.6 28 23-50 50-77 (108)
27 2v50_A Multidrug resistance pr 33.9 94 0.0032 29.5 7.2 142 21-179 42-186 (1052)
28 2z51_A NIFU-like protein 2, ch 32.6 1.5E+02 0.005 21.8 7.0 62 98-167 14-76 (154)
29 1veh_A NIFU-like protein hirip 27.8 68 0.0023 21.5 3.7 36 131-167 48-86 (92)
30 1dhn_A DHNA, 7,8-dihydroneopte 26.8 1.1E+02 0.0039 21.0 5.0 31 145-175 75-106 (121)
31 1j27_A Hypothetical protein TT 22.4 1.8E+02 0.0063 19.7 5.2 32 21-53 7-38 (102)
32 2i1s_A Hypothetical protein; m 21.0 1.2E+02 0.004 22.7 4.4 39 5-43 5-43 (188)
33 3nrb_A Formyltetrahydrofolate 20.8 3.2E+02 0.011 21.8 7.7 44 111-154 214-262 (287)
34 3lou_A Formyltetrahydrofolate 20.6 3.3E+02 0.011 21.8 7.6 43 112-154 221-268 (292)
35 2atz_A H. pylori predicted cod 20.4 91 0.0031 23.5 3.4 56 4-67 98-153 (180)
36 1nbu_A DHNA, probable dihydron 20.2 1.4E+02 0.005 20.4 4.4 30 145-175 75-105 (119)
No 1
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.63 E-value=2e-15 Score=108.84 Aligned_cols=66 Identities=29% Similarity=0.477 Sum_probs=62.4
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
+|||.+||+||+|++|+.+++++||.|+++||+.++|+|+++++++|+++||.+.+++||++|...
T Consensus 22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~ 87 (107)
T 2zzt_A 22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN 87 (107)
T ss_dssp CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence 699999999999999999999999999999999999999999999999999987899999999765
No 2
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.60 E-value=6.2e-15 Score=103.30 Aligned_cols=62 Identities=27% Similarity=0.494 Sum_probs=59.9
Q ss_pred CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeC
Q 030287 3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65 (180)
Q Consensus 3 ~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~ 65 (180)
|||.+||+||+|++|+.+++++||.|++++|+.++|++++++++.|+++||. .+++||+||.
T Consensus 25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~-~~vtIh~ep~ 86 (94)
T 3byp_A 25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG-LQATIHVEPE 86 (94)
T ss_dssp TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT-EEEEEEEEEC
T ss_pred CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC-CEEEEEeCCC
Confidence 8999999999999999999999999999999999999999999999999997 4999999994
No 3
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.44 E-value=1.3e-13 Score=115.86 Aligned_cols=66 Identities=27% Similarity=0.528 Sum_probs=62.8
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ 68 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~ 68 (180)
.|||.++|++|+|++|+++++++|++||+++|+.|+|+|++++|++|++++|. .+++||+||+..+
T Consensus 227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~e 292 (306)
T 3j1z_P 227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVE 292 (306)
T ss_dssp STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSC
T ss_pred CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCC
Confidence 58999999999999999999999999999999999999999999999999985 8999999998754
No 4
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.40 E-value=1.2e-12 Score=108.55 Aligned_cols=65 Identities=29% Similarity=0.544 Sum_probs=62.2
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
.|||.++|++|+|++|+..++++|+++|+++|+.++|++++++|++|++++|. .+++||+||+..
T Consensus 218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~ 282 (283)
T 3h90_A 218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV 282 (283)
T ss_dssp SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence 58999999999999999999999999999999999999999999999999997 899999999864
No 5
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=98.99 E-value=6.7e-09 Score=72.20 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=65.0
Q ss_pred HHHHHHHhhhccC--CCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287 96 IDAVVYNTLSTKF--PEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP 173 (180)
Q Consensus 96 i~~~l~~~~~~~~--~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~ 173 (180)
..+.++..+.+ + +.+.++|++++..++....+++++.+++++++.++|+++.++++.+++++|.. .|.||+|+...
T Consensus 11 ~~~~I~~~l~~-~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~~ 88 (94)
T 3byp_A 11 EVERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEGE 88 (94)
T ss_dssp HHHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC-
T ss_pred HHHHHHHHHHh-cCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCCc
Confidence 34444555556 6 78899999999999888999999999999999999999999999999999976 99999998543
No 6
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=98.97 E-value=7.4e-09 Score=74.18 Aligned_cols=77 Identities=17% Similarity=0.331 Sum_probs=67.5
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP 173 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~ 173 (180)
..+.++..+.+ +|.+.+++++.+...++...+++++.+++++++.++|+++.++++.|++.+|.+..|.||+||...
T Consensus 11 ~~~~I~~~l~~-~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~ 87 (107)
T 2zzt_A 11 MYDDIFAVLER-FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN 87 (107)
T ss_dssp HHHHHHHHHTT-CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred HHHHHHHHHHc-CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence 44555666666 888999999999998888999999999999999999999999999999999999999999998754
No 7
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=98.56 E-value=7.2e-07 Score=73.61 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=65.7
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
..+.+++.+.+ .|...++|++++...+....+++|+.+|++++++++|++++++++.+++++|. ..|.||+||-+
T Consensus 207 ~~~~i~~~i~~-~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~ 281 (283)
T 3h90_A 207 ERQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS 281 (283)
T ss_dssp HHHHHHHHHHH-SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSC
T ss_pred HHHHHHHHHhc-CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCC
Confidence 44455555566 78889999999999988899999999999999999999999999999999997 78999999864
No 8
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=98.56 E-value=1.7e-07 Score=78.56 Aligned_cols=81 Identities=10% Similarity=0.137 Sum_probs=70.9
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCCC
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPIP 175 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~~ 175 (180)
..+.++..+.+ .|.+.++|++++..++.+..+++++.+|+++++.++|++++++|+++++.+| ..+|.||+||-+.=|
T Consensus 216 ~~~~I~~~i~~-~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~-~~~v~IhveP~~~eP 293 (306)
T 3j1z_P 216 TRQRIKLIAKE-DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFE-DAEVIIHQDPVQVEP 293 (306)
T ss_dssp HHHHHHHHHHH-STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHST-TCEEEECCEETTSCC
T ss_pred HHHHHHHHHhc-CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC-CCeEEEEeCCCCCCC
Confidence 34445556666 8888999999999999999999999999999999999999999999999887 568999999988888
Q ss_pred CCc
Q 030287 176 EYQ 178 (180)
Q Consensus 176 ~~~ 178 (180)
--|
T Consensus 294 t~~ 296 (306)
T 3j1z_P 294 TTQ 296 (306)
T ss_dssp CCC
T ss_pred Ccc
Confidence 766
No 9
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=90.27 E-value=3.1 Score=31.12 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHHH---HhhhccCCCC
Q 030287 35 SAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVY---NTLSTKFPEK 111 (180)
Q Consensus 35 ~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~ 111 (180)
+-.-.+...||+.|++.+|++..|.- ..+.... .....+.+++.|. ..+++. .+
T Consensus 50 ss~~Tlk~~Ie~~L~~~vpev~~V~~----v~~~~e~-----------------l~L~~~~v~~~L~~iRP~L~~~--dG 106 (154)
T 2z51_A 50 SSTMTMKMGIERRLMEKIPEIVAVEA----LPDEETG-----------------LELNEENIEKVLEEIRPYLIGT--AD 106 (154)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEE----CCSSCCS-----------------CCSSHHHHHHHHHHHGGGCCGG--GC
T ss_pred ccHhHHHHHHHHHHHHhCCCceEEEE----ccCchhh-----------------hHHHHHHHHHHHHHHHHHhhhc--CC
Confidence 34456667999999999998766532 2211111 1112344555444 333320 12
Q ss_pred CceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEE
Q 030287 112 MGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVS 165 (180)
Q Consensus 112 ~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ 165 (180)
. ++.+-.++++. + .+.+.+.++- ...+...+|+.+++.+|++.+|.
T Consensus 107 G---dvelv~v~~~~-v--~v~l~Gac~~--~~Tlk~~Ie~~l~e~vP~i~~V~ 152 (154)
T 2z51_A 107 G---SLDLVEIEDPI-V--KIRITGPAAG--VMTVRVAVTQKLREKIPSIAAVQ 152 (154)
T ss_dssp C---EEEEEEEETTE-E--EEEEESGGGG--CHHHHHHHHHHHHHHCTTCCEEE
T ss_pred C---CeEEEEEECCE-E--EEEEecCCcc--cHhHHHHHHHHHHHHCCCccEEE
Confidence 3 45554444442 2 3455566652 45677789999999999999985
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=85.44 E-value=18 Score=34.33 Aligned_cols=147 Identities=10% Similarity=0.037 Sum_probs=80.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHh-hCCCeeEEEEEEeeCCCC-CCCCccccc--ccccccCCCCCCCccHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHK-SHPEVSEVFIHIDPAYFQ-FSPSTMDQL--GLEGCKAHSSNICVDDLDI 96 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~-~~~~v~~v~IHidP~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~i 96 (180)
.+.+.+..|+..|+++..++.+.+|+.+++ +.|++..+...+--.... ... ...+ .+....... .......++
T Consensus 571 ~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~~v~s~~G~~~~~~~~n--~~~i~V~L~~~~~r~-~~~~s~~~i 647 (1057)
T 4dx5_A 571 VFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQN--TGIAFVSLKDWADRP-GEENKVEAI 647 (1057)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEEEEEEEESCSTTCCCTT--EEEEEEEECCGGGSC-SGGGSHHHH
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEecccCCCCCCc--eEEEEEEEecHHHcC-CcCCCHHHH
Confidence 467888999999999999999999999981 467777665443211000 000 0000 000000000 000134577
Q ss_pred HHHHHHhhhccCCCCCceeeEEEEEe------CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCcc-EEEEEEe
Q 030287 97 DAVVYNTLSTKFPEKMGVERITHHLL------HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVF-QVSVKLR 169 (180)
Q Consensus 97 ~~~l~~~~~~~~~~~~~v~~v~~h~~------~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~-~V~ih~e 169 (180)
.+.++..+.. +|.. .+..... +..-.+.+.+....+.+..+..+++.++++.+ ++.|++. .|..-
T Consensus 648 ~~~lr~~l~~-~p~~----~~~~~~~~~~~~~g~~~~~~i~l~~~~g~d~~~L~~~a~~l~~~l-~~~~gv~~~v~~~-- 719 (1057)
T 4dx5_A 648 TMRATRAFSQ-IKDA----MVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEA-AKHPDMLTSVRPN-- 719 (1057)
T ss_dssp HHHHHHHHTT-STTC----EEEEECCCSCGGGCCSSEEEEEEEECSSCCHHHHHHHHHHHHHHH-TTCTTTEEEEEES--
T ss_pred HHHHHHHHhc-CCCe----EEEEecCCcccCCCCCCCeeEEEEeCCCCCHHHHHHHHHHHHHHH-HcCCCceeccccc--
Confidence 7788877765 7652 1111111 11112333444434556677888999997665 5589888 65544
Q ss_pred cCCCCCCCc
Q 030287 170 LGRPIPEYQ 178 (180)
Q Consensus 170 ~~~~~~~~~ 178 (180)
...+-|+++
T Consensus 720 ~~~~~~~l~ 728 (1057)
T 4dx5_A 720 GLEDTPQFK 728 (1057)
T ss_dssp SCCCEEEEE
T ss_pred ccCCCceEE
Confidence 555556554
No 11
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=81.79 E-value=29 Score=33.03 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=77.9
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--eeEEEEEEeeCCC-CCCCCccccc--ccccccCCCCCCCccHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPE--VSEVFIHIDPAYF-QFSPSTMDQL--GLEGCKAHSSNICVDDLD 95 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~--v~~v~IHidP~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 95 (180)
.+.+.+..|+..|+++..+..+++|+.+++ .|+ +..+...+-.... .... ...+ .+..... .........+
T Consensus 571 ~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~-~p~~~V~~v~s~~G~~~~~~~~~--~~~i~v~l~~~~~-r~~~~~~~~~ 646 (1052)
T 2v50_A 571 VLFAQVQTPPGSSAERTQVVVDSMREYLLE-KESSSVSSVFTVTGFNFAGRGQS--SGMAFIMLKPWEE-RPGGENSVFE 646 (1052)
T ss_dssp EEEEEEECSTTCCHHHHHHHHHHHHHHHHH-HTTTTEEEEEEEESCCSSCCSTT--EEEEEEEECCTTS-CCSSTTSHHH
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-CCCceEEEEEEEecCCCCCCCCc--eEEEEEEEccHHh-cccccCCHHH
Confidence 357788899999999999999999999986 588 7776654421000 0000 0000 0000000 0000002346
Q ss_pred HHHHHHHhhhccCCCCCceeeEEEEE------eCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 96 IDAVVYNTLSTKFPEKMGVERITHHL------LHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 96 i~~~l~~~~~~~~~~~~~v~~v~~h~------~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
+.+.++..+.. +|.. ....-. .+....+.+.+.+..+....+..++++++++.+ ++.|++..|..-
T Consensus 647 i~~~l~~~l~~-~p~~----~~~~~~~~~~~~~g~~~~~~i~i~~~~g~d~~~L~~~a~~l~~~l-~~~~gv~~v~~~-- 718 (1052)
T 2v50_A 647 LAKRAQMHFFS-FKDA----MVFAFAPPSVLELGNATGFDLFLQDQAGVGHEVLLQARNKFLMLA-AQNPALQRVRPN-- 718 (1052)
T ss_dssp HHHHHHHHSSS-CSSS----EEEEECCCSCC-----CCCCEEEEECSSSCHHHHHHHHHHHHHHT-TSCTTEEEEEES--
T ss_pred HHHHHHHHhhc-CCCc----EEEEecCccccCCCCCCceEEEEEECCCCCHHHHHHHHHHHHHHH-hcCCCeEecccc--
Confidence 77777766655 5542 111110 011111223344444445566778888887554 458888777665
Q ss_pred cCCCCCCCcc
Q 030287 170 LGRPIPEYQL 179 (180)
Q Consensus 170 ~~~~~~~~~~ 179 (180)
.+.+-|++++
T Consensus 719 ~~~~~p~~~i 728 (1052)
T 2v50_A 719 GMSDEPQYKL 728 (1052)
T ss_dssp SCCCEECCBC
T ss_pred ccCCCeeEEE
Confidence 5555666654
No 12
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=76.10 E-value=11 Score=25.65 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=32.9
Q ss_pred ceeeEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHHHHHHHHHHHHCCCccEEEEEE
Q 030287 113 GVERITHHLLHGKILLEVEVSMSP-DTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKL 168 (180)
Q Consensus 113 ~v~~v~~h~~~~~~~v~~d~~v~~-~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~ 168 (180)
-|.++.+. +|+ +.|.+.+++ .++.. ..+..+++++++ +.|++..|.+.+
T Consensus 32 ~V~~v~v~--~~~--V~v~l~lt~~~cp~~--~~l~~~i~~al~-~l~gv~~V~V~l 81 (103)
T 3cq1_A 32 LIYDLVVE--PPR--AYVRMTLTTPGCPLH--DSLGEAVRQALS-RLPGVEEVEVEV 81 (103)
T ss_dssp CEEEEEEE--TTE--EEEEECCSSSSCCSS--CHHHHHHHHHHH-TSTTCCEEEEEE
T ss_pred ceEEEEEE--CCE--EEEEEEECCCCCcHH--HHHHHHHHHHHH-hCCCceeEEEEE
Confidence 35566553 354 445666653 47754 489999987765 589999988875
No 13
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=75.39 E-value=10 Score=36.03 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=76.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV 100 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 100 (180)
.+.+.+..|+.-+.+....++..+|+.|.+ .|++..++-..-. ....++ ..++. .......+.++.+++
T Consensus 53 ~v~V~~~~pg~s~~~~~~~v~~~iE~~l~~-~~~v~~v~s~s~~---g~~~i~---v~~~~----~~d~~~~~~~v~~~~ 121 (1054)
T 3ne5_A 53 QVIIKTSYPGQAPQIVENQVTYPLTTTMLS-VPGAKTVRGFSQF---GDSYVY---VIFED----GTDPYWARSRVLEYL 121 (1054)
T ss_dssp EEEEEEECTTCCHHHHHHHTHHHHHHHHTT-STTEEEEEEEEET---TEEEEE---EEECT----TCCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHHHhcC-CCCceEEEEEEeC---CeEEEE---EEEEC----CCCHHHHHHHHHHHH
Confidence 466778888877777777889999999974 7887766311110 000000 00000 000111245677777
Q ss_pred HHhhhccCCCCCceeeEEEEEeC-C-eEEEEEEEEeC-CCCChhHHHHHHHH-HHHHHHHHCCCccEEEEEEecCCCCCC
Q 030287 101 YNTLSTKFPEKMGVERITHHLLH-G-KILLEVEVSMS-PDTSIRDAMKVAEE-AEKEIMKAAPNVFQVSVKLRLGRPIPE 176 (180)
Q Consensus 101 ~~~~~~~~~~~~~v~~v~~h~~~-~-~~~v~~d~~v~-~~~~i~~ah~ia~~-le~~i~~~~p~~~~V~ih~e~~~~~~~ 176 (180)
.....+ +|.+... .+-... + ...+.+-+.-+ ++.+..+-.+++++ ++.+ +++.|++..|.+. +..-||
T Consensus 122 ~~~~~~-lP~~~~~---~~~~~~~~~~~~~~~~l~~~~g~~~~~~L~~~a~~~~~~~-l~~~pgv~~V~~~---g~~~~~ 193 (1054)
T 3ne5_A 122 NQVQGK-LPAGVSA---ELGPDATGVGWIYEYALVDRSGKHDLADLRSLQDWFLKYE-LKTIPDVAEVASV---GGVVKE 193 (1054)
T ss_dssp HTTSTT-SCSSCCE---EECCSSCGGGEEEEEEEEESSSSSCHHHHHHHHHHTHHHH-HTTSTTEEEEEEE---ESCCEE
T ss_pred HHHHhc-CCCcCCC---CCCCCCCCccceEEEEEEcCCCCCCHHHHHHHHHHHHHHH-HhcCCCeEEEEEe---CCCcEE
Confidence 665555 7764322 111111 1 22344444333 34676777788886 5444 5669999999874 344566
Q ss_pred Ccc
Q 030287 177 YQL 179 (180)
Q Consensus 177 ~~~ 179 (180)
+++
T Consensus 194 i~i 196 (1054)
T 3ne5_A 194 YQV 196 (1054)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 14
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=73.77 E-value=7.6 Score=26.78 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=34.8
Q ss_pred eeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 114 VERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 114 v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
|.++.+.. +|++.|.+.+.. +.++.. ..+..++++++++..|++..|.|.+...
T Consensus 35 V~~I~v~~-~~~V~V~ltlt~-p~cp~~--~~i~~~i~~al~~~l~Gv~~V~V~l~~~ 88 (108)
T 3lno_A 35 VYDVTADE-NNNAVITMTMTS-IGCPMA--GQIVSDVKKVLSTNVPEVNEIEVNVVWN 88 (108)
T ss_dssp EEEEEECT-TCCEEEEECCSC-TTCTTH--HHHHHHHHHHHHHHCTTCCCEEEEECCS
T ss_pred ceEEEECC-CCeEEEEEEECC-CCCcHH--HHHHHHHHHHHHHhCCCCceEEEEEEec
Confidence 44554431 245555444433 347754 5899999888856799999999887544
No 15
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=71.01 E-value=6.9 Score=37.27 Aligned_cols=140 Identities=11% Similarity=0.127 Sum_probs=75.5
Q ss_pred EEEEEEEECCCCCHHH-HHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccc-cccCCCCCCCccHHHHHH
Q 030287 21 YLDVHIVVDPFSSVSA-AHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLE-GCKAHSSNICVDDLDIDA 98 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~e-aH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 98 (180)
.+.+.+..|+. |.++ ...++..+|+.+.. ++++..+.-..-.. ....++ ..++ |+ .......++.+
T Consensus 42 ~v~V~~~~pga-s~~~ve~~vt~~iE~~l~~-~~~v~~i~s~s~~~--g~~~i~---v~~~~~~-----d~~~a~~~v~~ 109 (1057)
T 4dx5_A 42 AVTISASYPGA-DAKTVQDTVTQVIEQNMNG-IDNLMYMSSNSDST--GTVQIT---LTFESGT-----DADIAQVQVQN 109 (1057)
T ss_dssp EEEEEEECTTC-CHHHHHHHTHHHHHHTCCS-CTTEEEEEEEEETT--SEEEEE---EEECTTC-----CHHHHHHHHHH
T ss_pred eEEEEEEeCCC-CHHHHHHHHHHHHHHHHcC-CCCcEEEEEEecCC--CeEEEE---EEEeCCC-----CHHHHHHHHHH
Confidence 45667778854 6665 57788999999974 78776654332110 000000 0000 00 01223567888
Q ss_pred HHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHH-HHHHHHHHHHCCCccEEEEEEecCCCCCC
Q 030287 99 VVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSP-DTSIRDAMKVA-EEAEKEIMKAAPNVFQVSVKLRLGRPIPE 176 (180)
Q Consensus 99 ~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~-~~~i~~ah~ia-~~le~~i~~~~p~~~~V~ih~e~~~~~~~ 176 (180)
+++.+... +|....-..+..-.......+.+-+.-+. +.+..+-.+++ .+++..+ ++.|++..|.+. +. -||
T Consensus 110 ~~~~~~~~-lP~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~a~~~i~~~l-~~i~gv~~v~~~---g~-~~~ 183 (1057)
T 4dx5_A 110 KLQLAMPL-LPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAI-SRTSGVGDVQLF---GS-QYA 183 (1057)
T ss_dssp HHHHHGGG-SCHHHHHHCCEEEEBCSSCSEEEEEEETTSCSCHHHHHHHHHHHTHHHH-HTSTTEEEEEES---SC-CEE
T ss_pred HHHHHHhh-CCCccCCCcceeccCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-hCCCCceEEEec---CC-cEE
Confidence 88777666 87532222234433333322333444332 45666666766 5787665 559999999873 33 555
Q ss_pred Cc
Q 030287 177 YQ 178 (180)
Q Consensus 177 ~~ 178 (180)
++
T Consensus 184 i~ 185 (1057)
T 4dx5_A 184 MR 185 (1057)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 16
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=61.21 E-value=34 Score=22.95 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhccC----CCCCceeeEEEEEeC-CeEEEEEEEEeCC-CCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 93 DLDIDAVVYNTLSTKF----PEKMGVERITHHLLH-GKILLEVEVSMSP-DTSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 93 ~~~i~~~l~~~~~~~~----~~~~~v~~v~~h~~~-~~~~v~~d~~v~~-~~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
.++|.++|+.+..-.+ -...-|.++.+. + |++. |.+.+++ .++. ...+..+++++++ +.|++..|.+
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~--~~~~V~--v~l~lt~~~cp~--~~~l~~~i~~al~-~l~gv~~v~V 80 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQID--DQNNVK--VLMTMTTPMCPL--AGMILSDAEEAIK-KIEGVNNVEV 80 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEEC--TTCEEE--EEECCSSSCCSS--HHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEc--CCCEEE--EEEEECCCCCcH--HHHHHHHHHHHHH-hCCCcceEEE
Confidence 4566666654421111 111235555552 2 4444 4555553 4675 4589999987765 5899998887
Q ss_pred EE
Q 030287 167 KL 168 (180)
Q Consensus 167 h~ 168 (180)
.+
T Consensus 81 ~l 82 (103)
T 1uwd_A 81 EL 82 (103)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 17
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=55.11 E-value=16 Score=23.91 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=39.8
Q ss_pred eEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCCC
Q 030287 116 RITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRPI 174 (180)
Q Consensus 116 ~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~~ 174 (180)
++++.-.+++-.+.+|+.++-+-. .......+|+++.+.-..-.++.+-.|-+.++
T Consensus 7 ditikiqrdgqeieidirvstgke---leralqelekalaragarnvqitisaendeqa 62 (96)
T 2jvf_A 7 DITIKIQRDGQEIEIDIRVSTGKE---LERALQELEKALARAGARNVQITISAENDEQA 62 (96)
T ss_dssp EEEEEEEETTEEEEEEEECCSSSH---HHHHHHHHHHHHHHHTCSEEEEEEECSSHHHH
T ss_pred EEEEEEeeCCeEEEEEEEEcccHH---HHHHHHHHHHHHHhccccceEEEEEecChHHH
Confidence 677777778888888999887654 45677888888888666666666665544433
No 18
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=51.10 E-value=52 Score=21.96 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=39.2
Q ss_pred HHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHHHHHHHHHHHHCCCccEEEEE
Q 030287 100 VYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSP-DTSIRDAMKVAEEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 100 l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~-~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih 167 (180)
+|..++. ... ++.+-.++++. |.+.+.=.+ +|+.+ ...+...+|+.+++.+|++..|..-
T Consensus 19 IRP~L~~-dGG-----dvelv~v~~g~-V~V~L~GaC~gCpss-~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 19 LRPFLLR-DGG-----DCTLVDVEDGI-VKLQLHGACGTCPSS-TITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp HHHHHHH-HSC-----EEEEEECCSSE-EEEEEESSCCSSCHH-HHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred hcHHHHh-cCC-----eEEEEEEECCE-EEEEEeecCCCCcch-HHHHHHHHHHHHHHhCCCceEEEec
Confidence 6666666 333 66666666542 322333333 36654 5788889999999999999988653
No 19
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=50.36 E-value=1.7e+02 Score=27.66 Aligned_cols=144 Identities=19% Similarity=0.074 Sum_probs=76.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCC--Cccccc--ccccccCCCCCCCccHHHHH
Q 030287 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP--STMDQL--GLEGCKAHSSNICVDDLDID 97 (180)
Q Consensus 22 vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~i~ 97 (180)
+.+.+..|+..|+++..++.+++|+.++ +.|++..+...+-........ ....++ .+.... .........++.
T Consensus 577 ~~v~~~~p~Gtsle~t~~~~~~ie~~l~-~~p~V~~v~s~~G~~~~~~~~~~~~~~~~~v~l~~~~--~~~~~~~~~~l~ 653 (1054)
T 3ne5_A 577 LLYMPSTLPGISAAEAASMLQKTDKLIM-SVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQE--QWRPGMTMDKII 653 (1054)
T ss_dssp EEECCBCCTTCCHHHHHHHHHHHHHHHH-TSTTEEEEEEEEECCSSTTCCCCTTCBCEEEEECCTT--TSCSSCCHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEEEecCCCCCCCCCCcceEEEEEEecchh--hccccCCHHHHH
Confidence 3456778999999999999999999996 578888877655431110000 000000 000000 000011346677
Q ss_pred HHHHHhhhccCCCCCceeeEE------EEE-eCC-eEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEe
Q 030287 98 AVVYNTLSTKFPEKMGVERIT------HHL-LHG-KILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLR 169 (180)
Q Consensus 98 ~~l~~~~~~~~~~~~~v~~v~------~h~-~~~-~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e 169 (180)
+.++..+ + +|.... .+. +-. ..| +-.+ .+.+.++ +.++..+++.++++.+ ++.|++..|..-+
T Consensus 654 ~~lr~~~-~-~p~~~~--~~~~~~~~~~~~~~~g~~~~i--~i~l~G~-d~~~L~~~a~~l~~~l-~~~~gv~~v~~~~- 724 (1054)
T 3ne5_A 654 EELDNTV-R-LPGLAN--LWVPPIRNRIDMLSTGIKSPI--GIKVSGT-VLADIDAMAEQIEEVA-RTVPGVASALAER- 724 (1054)
T ss_dssp HHHHHHS-C-CTTCBC--CEECHHHHHHHHHHTSCSSSE--EEEEECS-CHHHHHHHHHHHHHHH-HHSTTCSEEEECC-
T ss_pred HHHHHHc-C-CCCcee--eeccccccccccccCCCCCcE--EEEEeCC-CHHHHHHHHHHHHHHH-hcCCCceEeeccc-
Confidence 7777664 4 654211 000 000 011 1122 3333333 5567788999997665 4599999887543
Q ss_pred cCCCCCCCc
Q 030287 170 LGRPIPEYQ 178 (180)
Q Consensus 170 ~~~~~~~~~ 178 (180)
..+-|+++
T Consensus 725 -~~~~~~l~ 732 (1054)
T 3ne5_A 725 -LEGGRYIN 732 (1054)
T ss_dssp -SSCEEEEE
T ss_pred -cCCCeeEE
Confidence 33334443
No 20
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=48.93 E-value=44 Score=25.35 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=40.9
Q ss_pred CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 030287 17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (180)
Q Consensus 17 G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHi 62 (180)
-.++.=++.|.+|.++|.++--+++..+-+......+-+.++.||-
T Consensus 67 na~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~ 112 (185)
T 2ns6_A 67 NGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHA 112 (185)
T ss_dssp TSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred CCeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEc
Confidence 4467778999999999999999999999999888788778999997
No 21
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=43.82 E-value=58 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEE
Q 030287 123 HGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKL 168 (180)
Q Consensus 123 ~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~ 168 (180)
++++.=+|.+.+|.+++.++..++++++-++......-+..+.||-
T Consensus 67 na~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~ 112 (185)
T 2ns6_A 67 NGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHA 112 (185)
T ss_dssp TSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred CCeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEc
Confidence 3667888999999999999999999999877766566667899996
No 22
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=41.54 E-value=70 Score=21.04 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
.+.+---|.+|+++|-+.++++...|.+
T Consensus 50 ~~~LG~yp~~sL~~AR~~a~~~r~~l~~ 77 (88)
T 3jtz_A 50 RIALGAYPAISLSDARQQREGIRKMLAL 77 (88)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHHHc
Confidence 4677788999999999999999988875
No 23
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=38.13 E-value=64 Score=22.00 Aligned_cols=47 Identities=4% Similarity=-0.026 Sum_probs=32.8
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCC
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQ 68 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~ 68 (180)
++|.+++.+|++++.+++.++..+=...-+ ++-. .-...|+--....
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a~Eka~a~-eLq~-~G~~~~lWRv~G~ 49 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKADEKELAQ-RLQR-EGTWRHLWRIAGH 49 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHHHHHHHHH-HHHh-CCeeEEEEEecCC
Confidence 678999999999999999999877444433 3332 3455677655443
No 24
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=35.50 E-value=17 Score=23.54 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=24.8
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEE
Q 030287 131 EVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVS 165 (180)
Q Consensus 131 d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ 165 (180)
.+.+.+.++- ...+...+|+.+++.+|++.+|.
T Consensus 39 ~v~l~GaC~g--c~Tlk~gIe~~L~~~vpei~~V~ 71 (74)
T 1th5_A 39 KVRLTGPAAV--VRTVRIAVSKKLREKIPSIQIVQ 71 (74)
T ss_dssp EECCCSSSSS--SSSHHHHHHHHHHHHCTTCSEEE
T ss_pred EEEEecCCcc--hHHHHHHHHHHHHHHCCCCcEEE
Confidence 4666666652 34677789999999999999885
No 25
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=35.10 E-value=72 Score=21.01 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=42.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHH
Q 030287 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV 100 (180)
Q Consensus 22 vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v-~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 100 (180)
|++.+-=...++-.....+...+.++|...||+. ..|. +-|...+.-+ ..|. ....++.|.+.|
T Consensus 3 VEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~--Vr~~s~n~ls-------V~g~------~k~dKe~i~eiL 67 (81)
T 1ghh_A 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVS--VRYAAANNLS-------VIGA------TKEDKQRISEIL 67 (81)
T ss_dssp EEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEE--EEEESSCEEE-------EESC------CHHHHHHHHHHH
T ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEE--EeecCCCcee-------ecCC------ChhHHHHHHHHH
Confidence 3343333345777788899999999999999973 1454 4454433222 1111 112477788888
Q ss_pred HHhhhc
Q 030287 101 YNTLST 106 (180)
Q Consensus 101 ~~~~~~ 106 (180)
...|..
T Consensus 68 qE~we~ 73 (81)
T 1ghh_A 68 QETWES 73 (81)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 777654
No 26
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=34.45 E-value=97 Score=21.20 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIHK 50 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~~ 50 (180)
.+.|---|.+|+.+|-+.++.+...|.+
T Consensus 50 ~~~LG~yp~~SLa~AR~~a~~~r~~l~~ 77 (108)
T 3ju0_A 50 LLALGVYPAVSLADARQRRDEAKKLLAA 77 (108)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4566677899999999999999998865
No 27
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=33.88 E-value=94 Score=29.48 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=72.2
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHH
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVV 100 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 100 (180)
.+.+.+..|+.-+.+....++..+|+.|.+ .|++..+.-..... ....++ +.+.. .........++.+++
T Consensus 42 ~v~v~~~~pg~s~~~~~~~v~~~iE~~l~~-~~~v~~v~s~sg~~--~~~~i~---v~~~~----~~~~~~~~~~v~~~l 111 (1052)
T 2v50_A 42 AIAVQVSYPGASAETVQDTVVQVIEQQMNG-IDNLRYISSESNSD--GSMTIT---VTFEQ----GTDPDIAQVQVQNKL 111 (1052)
T ss_dssp EEEEEEECTTCCHHHHHHHTHHHHHTTCCS-CTTEEEEECCEETT--SEEEEE---EEECS----SCCHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCHHHHHHHHHHHHHHHHcC-CCCceEEEEEecCC--CeEEEE---EEEEC----CCCHHHHHHHHHHHH
Confidence 456667777665555557799999999975 78877665333100 000000 00100 000111245777788
Q ss_pred HHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCC--CChhHHHHHH-HHHHHHHHHHCCCccEEEEEEecCCCCCCC
Q 030287 101 YNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPD--TSIRDAMKVA-EEAEKEIMKAAPNVFQVSVKLRLGRPIPEY 177 (180)
Q Consensus 101 ~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~--~~i~~ah~ia-~~le~~i~~~~p~~~~V~ih~e~~~~~~~~ 177 (180)
+..+.. +|....-..+..-..++...+.+.+.= ++ .+..+-.+++ .+++..++ +.|++..|.+. + .-||+
T Consensus 112 ~~~~~~-lP~~~~~p~i~~~~~~~~~~~~~~l~g-~~~~~~~~~L~~~a~~~i~~~L~-~i~gv~~v~~~---g-~~~~i 184 (1052)
T 2v50_A 112 QLATPL-LPQEVQRQGIRVTKAVKNFLMVVGVVS-TDGSMTKEDLSNYIVSNIQDPLS-RTKGVGDFQVF---G-SQYSM 184 (1052)
T ss_dssp HHHGGG-SCHHHHTTCCEEECEEEEEEEEEEEEE-SSTTSCHHHHHHHHHHHTHHHHH-TSTTEEEEEES---S-CCEEE
T ss_pred HHHHhh-CCCCCCCCeeEecCCCCcceEEEEEEc-CCCCCCHHHHHHHHHHHHHHHHh-CCCCceEEEec---C-CcEEE
Confidence 777656 775311101222111112233333332 23 4543455654 56866654 59999999874 3 35665
Q ss_pred cc
Q 030287 178 QL 179 (180)
Q Consensus 178 ~~ 179 (180)
++
T Consensus 185 ~i 186 (1052)
T 2v50_A 185 RI 186 (1052)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 28
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=32.61 E-value=1.5e+02 Score=21.77 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCC-CCChhHHHHHHHHHHHHHHHHCCCccEEEEE
Q 030287 98 AVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSP-DTSIRDAMKVAEEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 98 ~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~-~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih 167 (180)
+.+|..++. ... ++.+-.++++ .+.+.+.=.+ +|+.+ ...+...+|+.+++.+|++..|.--
T Consensus 14 ~~iRP~l~~-dGG-----dvelv~v~~~-~V~v~l~GaC~gC~ss-~~Tlk~~Ie~~L~~~vpev~~V~~v 76 (154)
T 2z51_A 14 DEIRPYLMS-DGG-----NVALHEIDGN-VVRVKLQGACGSCPSS-TMTMKMGIERRLMEKIPEIVAVEAL 76 (154)
T ss_dssp HHHHHHHHH-TTE-----EEEEEEEETT-EEEEEEEHHHHTCHHH-HHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHhChHHHh-cCC-----eEEEEEEECC-EEEEEEECCCCCCCcc-HhHHHHHHHHHHHHhCCCceEEEEc
Confidence 346666766 333 5666555554 2322333232 25543 5778889999999999999888654
No 29
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=27.85 E-value=68 Score=21.55 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=26.4
Q ss_pred EEEeCCC---CChhHHHHHHHHHHHHHHHHCCCccEEEEE
Q 030287 131 EVSMSPD---TSIRDAMKVAEEAEKEIMKAAPNVFQVSVK 167 (180)
Q Consensus 131 d~~v~~~---~~i~~ah~ia~~le~~i~~~~p~~~~V~ih 167 (180)
.+.+.+. |+.+ ...+...+|+.+++.+|++..|.--
T Consensus 48 ~v~l~GaC~gC~ss-~~Tlk~gIE~~L~~~vpev~~V~~v 86 (92)
T 1veh_A 48 RLKLQGSCTSCPSS-IITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp EECCCCCCCCCHHH-HHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred EEEEeecCCCCCCc-HHHHHHHHHHHHHHHCCCCCEEEEc
Confidence 4555543 5544 5778889999999999999988653
No 30
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=26.76 E-value=1.1e+02 Score=20.98 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCccEEEEEEe-cCCCCC
Q 030287 145 KVAEEAEKEIMKAAPNVFQVSVKLR-LGRPIP 175 (180)
Q Consensus 145 ~ia~~le~~i~~~~p~~~~V~ih~e-~~~~~~ 175 (180)
.+|.++-+.+++.+|.+..|.+-++ |+.|+|
T Consensus 75 ~lA~~Ia~~~l~~~~~v~~v~V~v~Kp~api~ 106 (121)
T 1dhn_A 75 HLAERIANRINSQYNRVMETKVRITKENPPIP 106 (121)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEESSCSCS
T ss_pred HHHHHHHHHHHHHCCCceEEEEEEEcCCCCCC
Confidence 5777887778888999998888874 555577
No 31
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=22.42 E-value=1.8e+02 Score=19.69 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=29.2
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCC
Q 030287 21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHP 53 (180)
Q Consensus 21 ~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~ 53 (180)
.+.+++.+| .-|+.+=-.+...+..+++++|+
T Consensus 7 ~l~~~l~l~-~~SLKeKR~vvksl~~rlr~rFn 38 (102)
T 1j27_A 7 LYTARLETP-ARSLKEKRALIKPALERLKARFP 38 (102)
T ss_dssp EEEEEEECC-CSSHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEEEe-CCChHHhHHHHHHHHHHHhhcCC
Confidence 456788889 89999999999999999999997
No 32
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=21.04 E-value=1.2e+02 Score=22.67 Aligned_cols=39 Identities=13% Similarity=-0.011 Sum_probs=28.6
Q ss_pred ceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHH
Q 030287 5 LQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGEN 43 (180)
Q Consensus 5 V~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ 43 (180)
...+..||+.--|..--+-=.|+||+++|+.+.|.+...
T Consensus 5 ~~~iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~ 43 (188)
T 2i1s_A 5 FEKVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQA 43 (188)
T ss_dssp CCEEEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHH
T ss_pred CCcEEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 455777888877643334578899999999999976543
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=20.81 E-value=3.2e+02 Score=21.79 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 030287 111 KMGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEI 154 (180)
Q Consensus 111 ~~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i 154 (180)
+.....+|+||.. |.+...--+.++++.+..+-.+...++|..+
T Consensus 214 G~k~tG~Tvh~v~~~lD~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e~~~ 262 (287)
T 3nrb_A 214 GVKLIGATAHFVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIERRV 262 (287)
T ss_dssp TCSEEEEEEEECCSSSSCCCEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 3567899999987 5677778888999888776555555555443
No 34
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=20.61 E-value=3.3e+02 Score=21.81 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=31.6
Q ss_pred CceeeEEEEEeC-----CeEEEEEEEEeCCCCChhHHHHHHHHHHHHH
Q 030287 112 MGVERITHHLLH-----GKILLEVEVSMSPDTSIRDAMKVAEEAEKEI 154 (180)
Q Consensus 112 ~~v~~v~~h~~~-----~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i 154 (180)
.....+|+||.. |.+...-.+.+.++.+..+-.+....+|..+
T Consensus 221 ~~~~G~Tvh~v~~~lD~G~Ii~Q~~v~i~~~dt~~~L~~r~~~~e~~~ 268 (292)
T 3lou_A 221 VKLIGATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECIT 268 (292)
T ss_dssp CSEEEEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEEcCCCcCCCEEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 457789999987 5677888889999888776555555555543
No 35
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=20.35 E-value=91 Score=23.50 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=36.6
Q ss_pred CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 4 gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
|..+++--++..-|. +++-+| + +..++.||++++..+-..|.+++|. ...+=|..+
T Consensus 98 GfinftaY~tKtpgh-lhlyIh--k-ghttL~E~~ql~~~lS~kLa~klpk----eWr~fPs~d 153 (180)
T 2atz_A 98 GFMNFTAYNTKTPGH-LHLYVH--K-GHTELGEGERLVKTLSMKLAQGLPK----EWKVFPSNE 153 (180)
T ss_dssp TCCCEEEEECSSTTC-EEEEEC--C-CSEEHHHHHHHHHHHHHHHHTTSCC----CEEEESCTT
T ss_pred CcceeEeeccCCCCe-EEEEEe--c-CCccHHHHHHHHHHHHHHHHhhCcc----ceeeCCCcc
Confidence 455555555554454 222222 2 5669999999999999999999994 244555443
No 36
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel, beta-sheet, two alpha helices, structural genomics, PSI; HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP: d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Probab=20.20 E-value=1.4e+02 Score=20.37 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCccEEEEEEe-cCCCCC
Q 030287 145 KVAEEAEKEIMKAAPNVFQVSVKLR-LGRPIP 175 (180)
Q Consensus 145 ~ia~~le~~i~~~~p~~~~V~ih~e-~~~~~~ 175 (180)
.+|.++-+.+++ +|.+..|.+.++ |+.++|
T Consensus 75 ~lA~~Ia~~~l~-~~~v~~v~V~v~Kp~api~ 105 (119)
T 1nbu_A 75 TVGAEIADHVMD-DQRVHAVEVAVHKPQAPIP 105 (119)
T ss_dssp HHHHHHHHHHHT-STTCCEEEEEEECTTCCCS
T ss_pred HHHHHHHHHHhc-CCCccEEEEEEECCCCCCC
Confidence 577888777888 999998888884 555566
Done!