Query 030287
Match_columns 180
No_of_seqs 216 out of 1096
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 18:30:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bypa1 d.52.9.1 (A:6-87) Puta 99.8 8.7E-19 6.3E-23 119.5 10.6 62 4-66 21-82 (82)
2 d2qfia1 d.52.9.1 (A:209-290) F 99.7 2.2E-19 1.6E-23 122.3 -5.0 64 2-66 17-80 (82)
3 d3bypa1 d.52.9.1 (A:6-87) Puta 99.2 4.2E-11 3.1E-15 80.6 10.2 73 97-171 7-81 (82)
4 d2qfia1 d.52.9.1 (A:209-290) F 98.9 2.3E-11 1.7E-15 81.8 -3.1 74 97-172 7-80 (82)
5 d2cu6a1 d.52.8.2 (A:6-96) Hypo 86.8 1.3 9.6E-05 28.3 6.9 72 92-170 2-78 (91)
6 d1ghha_ d.57.1.1 (A:) DNA dama 62.8 5.9 0.00043 24.8 4.5 71 22-106 3-73 (81)
7 d1uwda_ d.52.8.2 (A:) Hypothet 58.0 19 0.0014 22.9 7.9 52 114-171 32-84 (102)
8 d1xhja_ d.52.8.1 (A:) Nitrogen 49.8 26 0.0019 21.8 8.7 58 99-166 18-78 (88)
9 d1mlia_ d.58.4.1 (A:) Muconala 48.3 11 0.00078 24.3 4.0 24 20-43 3-26 (96)
10 d1th5a1 d.52.8.1 (A:154-226) N 44.1 5.8 0.00043 24.2 2.0 46 116-166 26-71 (73)
11 d1iwga3 d.58.44.1 (A:567-673) 43.9 31 0.0023 21.5 6.0 40 22-61 6-46 (107)
12 d1veha_ d.52.8.1 (A:) HIRA-int 42.8 13 0.00094 23.5 3.7 46 116-165 36-84 (92)
13 d2fyxa1 d.58.57.1 (A:1-130) Pu 36.3 52 0.0038 21.5 6.4 60 92-161 30-93 (130)
14 d2phcb2 d.74.5.1 (B:2-85) Unch 36.0 7.1 0.00051 23.9 1.5 51 13-68 2-61 (84)
15 d2f5ga1 d.58.57.1 (A:2-131) Pu 31.5 56 0.0041 21.3 5.9 63 93-162 32-95 (130)
16 d1xrsb2 d.230.4.1 (B:33-84) D- 30.9 16 0.0012 20.7 2.3 24 125-151 1-24 (52)
17 d2vapa2 d.79.2.1 (A:232-354) C 30.1 38 0.0028 22.1 4.7 27 23-49 55-81 (123)
18 d1izna_ e.43.1.1 (A:) Capz alp 25.7 70 0.0051 23.9 6.1 39 114-152 185-228 (275)
19 d2cg4a2 d.58.4.2 (A:67-152) Re 25.6 63 0.0046 19.1 6.0 63 94-173 17-79 (86)
20 d1ofua2 d.79.2.1 (A:209-317) C 25.6 36 0.0026 21.8 3.8 26 24-49 55-80 (109)
21 d2vjva1 d.58.57.1 (A:6-130) IS 24.7 79 0.0057 20.4 5.6 60 91-160 30-93 (125)
22 d1w5fa2 d.79.2.1 (A:216-336) C 24.5 35 0.0025 22.3 3.6 27 23-49 58-84 (121)
23 d1p6ta1 d.58.17.1 (A:1-72) Pot 23.5 63 0.0046 18.4 5.8 44 94-151 22-65 (72)
24 d2i52a1 d.316.1.1 (A:1-120) Hy 22.3 44 0.0032 22.1 3.7 34 33-67 38-71 (120)
25 d1r31a1 d.58.20.1 (A:111-220) 20.3 1E+02 0.0076 19.7 8.4 54 7-62 45-103 (110)
No 1
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=99.78 E-value=8.7e-19 Score=119.46 Aligned_cols=62 Identities=27% Similarity=0.497 Sum_probs=59.3
Q ss_pred CceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287 4 SLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (180)
Q Consensus 4 gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~ 66 (180)
+++++|+||+|++|+++|+|+||+||++||+.+||+|++.+|++|+++||. .+++||+||+.
T Consensus 21 ~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~-~~v~vHveP~g 82 (82)
T d3bypa1 21 RALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG-LQATIHVEPEG 82 (82)
T ss_dssp TCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT-EEEEEEEEECC
T ss_pred CceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CEEEEEeCCCC
Confidence 577999999999999999999999999999999999999999999999997 59999999974
No 2
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=99.67 E-value=2.2e-19 Score=122.29 Aligned_cols=64 Identities=30% Similarity=0.552 Sum_probs=61.8
Q ss_pred CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCC
Q 030287 2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66 (180)
Q Consensus 2 ~~gV~~vh~lr~r~~G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~ 66 (180)
+|||.++|+||+|++|+.+|+|+||+||++||+.+||+|++++|++|+++||. .+++||+||+.
T Consensus 17 ~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~ 80 (82)
T d2qfia1 17 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS 80 (82)
T ss_dssp SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSC
T ss_pred CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCcc
Confidence 69999999999999999999999999999999999999999999999999996 69999999986
No 3
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=99.23 E-value=4.2e-11 Score=80.62 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=62.5
Q ss_pred HHHHHHhhhccCC--CCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 97 DAVVYNTLSTKFP--EKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 97 ~~~l~~~~~~~~~--~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
.+.++.++.+ .+ .+.++|+++.++.+..+.+++++.||+++|+.+||++++++|+.+++.+|.. .|.||+||-
T Consensus 7 ~~~I~~~i~~-~~~~~vv~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~i~~~ve~~i~~~~~~~-~v~vHveP~ 81 (82)
T d3bypa1 7 VERIRAFLQE-RIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 81 (82)
T ss_dssp HHHHHHHHHH-HHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEEC
T ss_pred HHHHHHHHHh-CCCCCceeeeEEEeeEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCC-EEEEEeCCC
Confidence 3344444444 44 3568999999999999999999999999999999999999999999999986 899999983
No 4
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]}
Probab=98.88 E-value=2.3e-11 Score=81.80 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=65.1
Q ss_pred HHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCC
Q 030287 97 DAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGR 172 (180)
Q Consensus 97 ~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~ 172 (180)
.+.++..+.+ +|...++|+++.++.++.+.+++++.+|+++|+.+||++++++|+.+++.+|. ..|.||+||-+
T Consensus 7 ~~~I~~~i~~-~~gV~~vh~lr~r~~G~~~~vd~hi~v~~~~sv~~aH~I~~~ie~~l~~~~~~-~~v~iHveP~~ 80 (82)
T d2qfia1 7 RQEIIDIVTS-WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCS 80 (82)
T ss_dssp HHHHHHHHTT-SSSCSCBCCCCCCTTSCCBCCBSCTTSTTTCSCGGGHHHHHHHHHHTTSSSCC-SSCBCCCCCSC
T ss_pred HHHHHHHHHc-CCCceeeeEEEEEEeCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEEeCCcc
Confidence 3444555566 88889999999999999999999999999999999999999999999999986 48999999854
No 5
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=86.75 E-value=1.3 Score=28.28 Aligned_cols=72 Identities=11% Similarity=0.191 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHhhhcc----CCCCCceeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 92 DDLDIDAVVYNTLSTK----FPEKMGVERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 92 ~~~~i~~~l~~~~~~~----~~~~~~v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
+.+++.++|+.+..-. +-...-|.++.+. +|++.+ .+.++ ++++..+ .+..+++++++ ..+++..|.|
T Consensus 2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~--~~~v~v--~l~lt~~~cp~~~--~i~~~i~~al~-~l~gv~~V~V 74 (91)
T d2cu6a1 2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYV--RMTLTTPGCPLHD--SLGEAVRQALS-RLPGVEEVEV 74 (91)
T ss_dssp HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEE--TTEEEE--EECCSSSSCCSSC--HHHHHHHHHHH-TSTTCCEEEE
T ss_pred hHHHHHHHHhcCCCCCCCcChhhccceeEEEEe--ccccEE--EEEcCCCCCcHHH--HHHHHHHHHHH-cCCCCceEEE
Confidence 3455666665442111 1122335566553 465555 55554 4477554 89999987775 5999999988
Q ss_pred EEec
Q 030287 167 KLRL 170 (180)
Q Consensus 167 h~e~ 170 (180)
.+..
T Consensus 75 ~~~~ 78 (91)
T d2cu6a1 75 EVTF 78 (91)
T ss_dssp EECC
T ss_pred EEEe
Confidence 8743
No 6
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=62.80 E-value=5.9 Score=24.80 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=43.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCCCCCCCcccccccccccCCCCCCCccHHHHHHHHH
Q 030287 22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVY 101 (180)
Q Consensus 22 vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 101 (180)
|++.+-=...++..-...+...+.++|...||+ .+..|.+-+...+.-+ ..|. ....++.|.+.|.
T Consensus 3 IEl~~dK~~~lp~ga~~aL~~EL~kRl~~~fpD-~~~~v~Vr~~sa~~ls-------v~g~------~k~dK~~i~~iLq 68 (81)
T d1ghha_ 3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPD-NEGHVSVRYAAANNLS-------VIGA------TKEDKQRISEILQ 68 (81)
T ss_dssp EEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSS-SCCEEEEEEESSCEEE-------EESC------CHHHHHHHHHHHH
T ss_pred EEEEeecccCCCchHHHHHHHHHHHHHHhhCCC-CcceEEEeecCCCcce-------ecCC------ChhhHHHHHHHHH
Confidence 444444334577777888999999999999997 4444555555544332 1111 1223566777777
Q ss_pred Hhhhc
Q 030287 102 NTLST 106 (180)
Q Consensus 102 ~~~~~ 106 (180)
..|..
T Consensus 69 E~wE~ 73 (81)
T d1ghha_ 69 ETWES 73 (81)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 66644
No 7
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=58.04 E-value=19 Score=22.91 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=34.1
Q ss_pred eeeEEEEEeCCeEEEEEEEEeC-CCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecC
Q 030287 114 VERITHHLLHGKILLEVEVSMS-PDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLG 171 (180)
Q Consensus 114 v~~v~~h~~~~~~~v~~d~~v~-~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~ 171 (180)
|.++.+.. +|.+ .|.+.++ +.|+.. ..++.++++++++ .+++..|.|.+-.+
T Consensus 32 V~~i~I~~-~g~V--~v~~~lt~~~Cp~~--~~i~~~i~~al~~-~~gV~~v~V~i~~~ 84 (102)
T d1uwda_ 32 VYDIQIDD-QNNV--KVLMTMTTPMCPLA--GMILSDAEEAIKK-IEGVNNVEVELTFD 84 (102)
T ss_dssp CCCEEECT-TCEE--EEEECCSSSCCSSH--HHHHHHHHHHHHT-SSSCCEEEEEECCS
T ss_pred eeeEEecc-ccce--EEEEecCCCCCchH--HHHHHHHHHHHHc-CCCCceEEEEEEec
Confidence 44555421 1344 4456555 447754 5899999888774 99999999887443
No 8
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=49.84 E-value=26 Score=21.84 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCC---CChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 99 VVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPD---TSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 99 ~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~---~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
.+|..++. ... ++.+-.+.++. | .+.+.+. |+.+ ...+...+|+.+++.+|++..|.-
T Consensus 18 ~IRP~l~~-dGG-----dvelv~v~~g~-V--~v~l~GaC~gC~~s-~~Tlk~~Ie~~L~~~vpev~~V~~ 78 (88)
T d1xhja_ 18 RLRPFLLR-DGG-----DCTLVDVEDGI-V--KLQLHGACGTCPSS-TITLKAGIERALHEEVPGVIEVEQ 78 (88)
T ss_dssp HHHHHHHH-HSC-----EEEEEECCSSE-E--EEEEESSCCSSCHH-HHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HhhHHHHh-CCC-----cEEEEeccCCE-E--EEEecCCCCCCccH-HHHHHHHHHHHHHHHCCCCceEEE
Confidence 46666766 333 66666666553 2 3444333 5654 467889999999999999988765
No 9
>d1mlia_ d.58.4.1 (A:) Muconalactone isomerase, MLI {Pseudomonas putida [TaxId: 303]}
Probab=48.27 E-value=11 Score=24.29 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=21.8
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHH
Q 030287 20 LYLDVHIVVDPFSSVSAAHGVGEN 43 (180)
Q Consensus 20 ~~vd~hI~v~~~~sv~eaH~I~~~ 43 (180)
+++.++|.+|++++.+++.+|..+
T Consensus 3 f~V~m~V~~P~~m~~~e~~~i~a~ 26 (96)
T d1mlia_ 3 FHVKMTVKLPVDMDPAKATQLKAD 26 (96)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHH
Confidence 679999999999999999998765
No 10
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=44.12 E-value=5.8 Score=24.19 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=30.8
Q ss_pred eEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEE
Q 030287 116 RITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSV 166 (180)
Q Consensus 116 ~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~i 166 (180)
++.+..++++. +.+.+.+.++- ...+-..+|+.+++.+|++..|.+
T Consensus 26 dvelv~i~~~~---v~v~l~GaC~g--C~Tl~~gIe~~L~~~iPei~~V~~ 71 (73)
T d1th5a1 26 GLQFLMIKGPI---VKVRLTGPAAV--VRTVRIAVSKKLREKIPSIQIVQL 71 (73)
T ss_dssp CCCCCEEETTE---EEECCCSSSSS--SSSHHHHHHHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCCE---EEEEecCCCcc--cchHHHHHHHHHHHHCCCccEEEe
Confidence 44445555554 25677777542 235666799999999999998865
No 11
>d1iwga3 d.58.44.1 (A:567-673) Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia coli [TaxId: 562]}
Probab=43.87 E-value=31 Score=21.49 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=32.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHH-hhCCCeeEEEEE
Q 030287 22 LDVHIVVDPFSSVSAAHGVGENVRHQIH-KSHPEVSEVFIH 61 (180)
Q Consensus 22 vd~hI~v~~~~sv~eaH~I~~~ie~~i~-~~~~~v~~v~IH 61 (180)
+-+-++.|+..|+....+..+++++.+. ++.|++..++.-
T Consensus 6 ~~v~~~~P~Gasl~~t~~~~~~v~~~l~~~~~~~v~~~~~~ 46 (107)
T d1iwga3 6 FMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAV 46 (107)
T ss_dssp EEEEEECCSSCCHHHHHHHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHHHHHHhhccCCCCeEEEEEE
Confidence 4567899999999999999999999875 456777665533
No 12
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.82 E-value=13 Score=23.54 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=30.0
Q ss_pred eEEEEEeCCeEEEEEEEEeCCC---CChhHHHHHHHHHHHHHHHHCCCccEEE
Q 030287 116 RITHHLLHGKILLEVEVSMSPD---TSIRDAMKVAEEAEKEIMKAAPNVFQVS 165 (180)
Q Consensus 116 ~v~~h~~~~~~~v~~d~~v~~~---~~i~~ah~ia~~le~~i~~~~p~~~~V~ 165 (180)
.+.+..+.++. +.+.+... |+.+ ...+...+|+.+++.+|++..|.
T Consensus 36 dv~lv~v~~g~---V~v~l~GaC~gCp~s-~~Tlk~~Ie~~L~~~vpev~~V~ 84 (92)
T d1veha_ 36 DVIYRGFEDGI---VRLKLQGSCTSCPSS-IITLKSGIQNMLQFYIPEVEGVE 84 (92)
T ss_dssp CCCEEEEETTE---EEECCCCCCCCCHHH-HHHTHHHHHHHHHHHCSSCCCEE
T ss_pred ceEEEEeeCCe---EEEEEccCCCCChhH-HHHHHHHHHHHHHHHCCCcceEE
Confidence 34444444442 24555554 4433 46777999999999999998875
No 13
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=36.30 E-value=52 Score=21.48 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHH----HHHHHCCCc
Q 030287 92 DDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEK----EIMKAAPNV 161 (180)
Q Consensus 92 ~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~----~i~~~~p~~ 161 (180)
.++.+.+.++.+..+ . .+.-+.+.-..+.+++ -+.+++..++++ ++..|+. .+++++|.+
T Consensus 30 i~~~l~~~i~~~~~~-~----~~~i~~~~~~~DHVHl--lv~~~p~~svs~---~v~~lKg~Ssr~i~~~f~~l 93 (130)
T d2fyxa1 30 VADGLKDILRDIATQ-N----GLELVALEVMPDYVHL--LLGATPQHVIPD---FVKALKGASARRMFSAFPHL 93 (130)
T ss_dssp HHHHHHHHHHHHHHH-T----TCEEEEEEECSSEEEE--EEEECTTCCHHH---HHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHh-c----Ccceeeccccccccee--EEecCCCcchHH---HhhhhcchhHHHHHHhCchh
Confidence 345566666655544 2 2333334444566666 677799999887 5555544 455566654
No 14
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=35.97 E-value=7.1 Score=23.94 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=27.0
Q ss_pred EEeeCC-EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhh-CCCee-------EEEEEEeeCCCC
Q 030287 13 GRRAGS-SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKS-HPEVS-------EVFIHIDPAYFQ 68 (180)
Q Consensus 13 ~r~~G~-~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~-~~~v~-------~v~IHidP~~~~ 68 (180)
++.+|. .+.+++ ...++..-. .-+..+.+.|+++ ++++. .+.|++||...+
T Consensus 2 i~p~Gd~allv~f----g~~i~~~~~-~~v~~l~~~l~~~~~~gI~e~vPsy~SllV~yDp~~i~ 61 (84)
T d2phcb2 2 IKPAGDSAFLISF----GDEISEEIN-DRVHSLAKAIEKESPEWLVELVPAYSSLLVIYDPLKAS 61 (84)
T ss_dssp EEECSTTEEEEEC----CSCCCHHHH-HHHHHHHHHHHHHCCTTEEEEEEETTEEEEEECTTTSC
T ss_pred EeecCCcEEEEEE----CCcCCHHHH-HHHHHHHHHHHhcCCCCeeEecccceEEEEEECCCcCC
Confidence 466777 555544 555554433 3333344444443 44444 457888886653
No 15
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=31.51 E-value=56 Score=21.32 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHH-HHHHHHHCCCcc
Q 030287 93 DLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEA-EKEIMKAAPNVF 162 (180)
Q Consensus 93 ~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~l-e~~i~~~~p~~~ 162 (180)
...+.+.++.+..+ . + +.-+.+.-..+.+++ -+.+|+.+++++.-...... -..+++.+|++.
T Consensus 32 ~~~l~~~i~~~~~~-~--~--~~i~~~~~~~DHVHl--lv~~~p~~sis~~v~~lKg~SSr~i~~~f~~l~ 95 (130)
T d2f5ga1 32 AEYTKEVLKSIAEE-L--G--CEIIALEVMPDHIHL--FVNCPPRYAPSYLANYFKGKSARLILKKFPQLN 95 (130)
T ss_dssp HHHHHHHHHHHHHH-H--T--CEEEEEEEETTEEEE--EEECCTTSCHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHh-c--C--CccceeccCCCccee--eEecCCccCHHHHhhhhcchhHHHHHHHCcccc
Confidence 44455555555444 2 1 222333334566766 67789999988733222222 225667788654
No 16
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=30.92 E-value=16 Score=20.71 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=18.0
Q ss_pred eEEEEEEEEeCCCCChhHHHHHHHHHH
Q 030287 125 KILLEVEVSMSPDTSIRDAMKVAEEAE 151 (180)
Q Consensus 125 ~~~v~~d~~v~~~~~i~~ah~ia~~le 151 (180)
++.++|.++||++. +|.+.|.+|-
T Consensus 1 kVQlSFTLPVp~g~---~A~eAAk~la 24 (52)
T d1xrsb2 1 KVQLSFTLPLKNNE---RSAEAAKQIA 24 (52)
T ss_dssp CEEEEEEESSCSSH---HHHHHHHHHH
T ss_pred CeeEEEEeeCCCCh---HHHHHHHHHH
Confidence 35688999998764 5777888774
No 17
>d2vapa2 d.79.2.1 (A:232-354) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=30.05 E-value=38 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIH 49 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~ 49 (180)
=++|.-++++|+.|..++.+.+.+.+.
T Consensus 55 Lv~i~~~~d~~l~e~~~~~~~i~~~~~ 81 (123)
T d2vapa2 55 LIHVMGPEDLTLEEAREVVATVSSRLD 81 (123)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCCccHHHHHHHHHHHHHhcC
Confidence 378889999999999999999988775
No 18
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.73 E-value=70 Score=23.89 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=22.8
Q ss_pred eeeEEEEEeCCe-EEEE----EEEEeCCCCChhHHHHHHHHHHH
Q 030287 114 VERITHHLLHGK-ILLE----VEVSMSPDTSIRDAMKVAEEAEK 152 (180)
Q Consensus 114 v~~v~~h~~~~~-~~v~----~d~~v~~~~~i~~ah~ia~~le~ 152 (180)
.-.|.+||+.++ +.+. |...+...-....|..++..|++
T Consensus 185 ~i~v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~A~~iv~~I~~ 228 (275)
T d1izna_ 185 VLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIEN 228 (275)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEEEEEECCCSHHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCeEEEEEccccccccccCChHHHHHHHHHHHHH
Confidence 447889999965 3332 34444444444447777666654
No 19
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=25.58 E-value=63 Score=19.09 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHHHHHHHCCCccEEEEEEecCCC
Q 030287 94 LDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEKEIMKAAPNVFQVSVKLRLGRP 173 (180)
Q Consensus 94 ~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~~i~~~~p~~~~V~ih~e~~~~ 173 (180)
..+.+.+ ++ +|. -..+|.+.|.-.+.+.+..+.. .++.+-+.+.+ ...|++.+...++-+...
T Consensus 17 ~~~~~~l----~~-~pe-----V~~~~~vtG~~D~i~~v~~~d~------~~l~~~i~~~i-~~~~gV~~t~T~ivl~~~ 79 (86)
T d2cg4a2 17 PSALAKL----ES-LDE-----VTEAYYTTGHYSIFIKVMCRSI------DALQHVLINKI-QTIDEIQSTETLIVLQNP 79 (86)
T ss_dssp HHHHHHH----HT-CTT-----EEEEEEESSSCSEEEEEEESCH------HHHHHHHHHTT-TTSTTEEEEEEEECSEEE
T ss_pred HHHHHHH----Hc-CCC-----EEEEEEecCCceEEEEEEECCH------HHHHHHHHHHh-hcCCCEeEEEEEEEEcce
Confidence 3455555 45 776 6678999998777677766532 23333343344 449999999999877543
No 20
>d1ofua2 d.79.2.1 (A:209-317) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.56 E-value=36 Score=21.77 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH
Q 030287 24 VHIVVDPFSSVSAAHGVGENVRHQIH 49 (180)
Q Consensus 24 ~hI~v~~~~sv~eaH~I~~~ie~~i~ 49 (180)
++|.-.+++|+.|..++.+.+.+.+.
T Consensus 55 v~i~gg~~~~l~e~~~~~~~i~~~~~ 80 (109)
T d1ofua2 55 VNITAGPDLSLGEYSDVGNIIEQFAS 80 (109)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhc
Confidence 77888999999999999988887664
No 21
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=24.68 E-value=79 Score=20.38 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHHH----HHHHHCCC
Q 030287 91 VDDLDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAEK----EIMKAAPN 160 (180)
Q Consensus 91 ~~~~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le~----~i~~~~p~ 160 (180)
+..+++.+.++....+ . .+.-+.+.-..+.+++ -+.++|.+++++ ++..|+. .+++++|+
T Consensus 30 ~v~~~l~~~i~~~~~~-~----~~~i~~~~~~~DHVHl--lv~~~p~~sis~---~v~~lKg~Ssr~i~~~f~~ 93 (125)
T d2vjva1 30 AVEMRLKEIIQEVAKE-L----RVEIIEMQTDKDHIHI--LADIDPSFGVMK---FIKTAKGRSSRILRQEFNH 93 (125)
T ss_dssp HHHHHHHHHHHHHHHH-T----TCEEEEEEEETTEEEE--EEECCTTTCHHH---HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhh-c----CceeeeccccCCcceE--EEEeccccChhH---hhchhcccchHHHHHHHHH
Confidence 3455666666666555 2 1223333334566666 777899999887 4444443 34444443
No 22
>d1w5fa2 d.79.2.1 (A:216-336) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}
Probab=24.49 E-value=35 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=22.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH
Q 030287 23 DVHIVVDPFSSVSAAHGVGENVRHQIH 49 (180)
Q Consensus 23 d~hI~v~~~~sv~eaH~I~~~ie~~i~ 49 (180)
=++|...+++|+.|.+++.+.+.+.+.
T Consensus 58 Lv~i~~g~d~sl~ei~~~~~~i~~~~~ 84 (121)
T d1w5fa2 58 VFNITAPSNIRMEEVHEAAMIIRQNSS 84 (121)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTTSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 367788999999999999888876543
No 23
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=23.48 E-value=63 Score=18.36 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhccCCCCCceeeEEEEEeCCeEEEEEEEEeCCCCChhHHHHHHHHHH
Q 030287 94 LDIDAVVYNTLSTKFPEKMGVERITHHLLHGKILLEVEVSMSPDTSIRDAMKVAEEAE 151 (180)
Q Consensus 94 ~~i~~~l~~~~~~~~~~~~~v~~v~~h~~~~~~~v~~d~~v~~~~~i~~ah~ia~~le 151 (180)
..|++.| .+ ++. |..+++.+..+...+.++ +...+ ..++.+.|+
T Consensus 22 ~~Ie~~l----~~-~~g---V~~v~v~~~~~~~~v~~d---~~~~~---~~~i~~~i~ 65 (72)
T d1p6ta1 22 ARIEKGL----KR-MPG---VTDANVNLATETVNVIYD---PAETG---TAAIQEKIE 65 (72)
T ss_dssp HHHHHHH----TT-SSS---EEEEEEEGGGTEEEEEEC---TTTSC---HHHHHHHHH
T ss_pred HHHHHHH----Hc-CCC---cEEEEEEcCCCEEEEEEC---CCCCC---HHHHHHHHH
Confidence 3466555 35 544 889999999999887664 33344 346777765
No 24
>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218 {Picrophilus torridus [TaxId: 82076]}
Probab=22.32 E-value=44 Score=22.07 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCeeEEEEEEeeCCC
Q 030287 33 SVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67 (180)
Q Consensus 33 sv~eaH~I~~~ie~~i~~~~~~v~~v~IHidP~~~ 67 (180)
|.+-|..+...||+.|.. .|.+.+++|+++....
T Consensus 38 s~~sa~sle~AIeesi~~-QPfvedv~V~I~~~~~ 71 (120)
T d2i52a1 38 NSENASMAEEFIERSTMI-QPFVENVRISINNVKR 71 (120)
T ss_dssp CTTTHHHHHHHHHHHHTT-STTEEEEEEEECCC--
T ss_pred ChhhHHHHHHHHHHHHhc-CCcEEEEEEEEehhhc
Confidence 345566777888888874 6999999999997543
No 25
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=20.33 E-value=1e+02 Score=19.67 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=42.2
Q ss_pred eeeeEEEEee-----CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 030287 7 GCHRLRGRRA-----GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI 62 (180)
Q Consensus 7 ~vh~lr~r~~-----G~~~~vd~hI~v~~~~sv~eaH~I~~~ie~~i~~~~~~v~~v~IHi 62 (180)
|+.++.+|.. |+.+.+++++.+...|=.--...+++.+...+.+..+ .++...+
T Consensus 45 G~~di~~r~~~~~~~~~~~~v~l~vdt~DAMGAN~iNt~lE~ia~~le~~~~--~~v~m~I 103 (110)
T d1r31a1 45 GCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITG--GQVRLRI 103 (110)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHHC--SEEEEEE
T ss_pred CeeEEEEEEccCCCcCCEEEEEEEEEhHHhhhhHHHHHHHHHHHHHHHHHhC--CeEEEEE
Confidence 6677777644 5688889999999999999999999999999987555 3555444
Done!