BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030289
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 323 bits (828), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 151/181 (83%), Positives = 169/181 (93%), Gaps = 1/181 (0%)
Query: 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
MG+ +L LFA+KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 4 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 63
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDR+R+ EA+DELHRML+EDELR+AV
Sbjct: 64 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 123
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
LLVFANKQDLPNAM+ +E+TDKLGLHSLRQR WYIQ+ CATSG+GLYEGLDWLS+N+++K
Sbjct: 124 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASK 183
Query: 180 G 180
Sbjct: 184 A 184
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 312 bits (800), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 148/177 (83%), Positives = 162/177 (91%), Gaps = 1/177 (0%)
Query: 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
MG + + L K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
+SFTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
LLVFANKQDLPNAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 310 bits (795), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 145/169 (85%), Positives = 157/169 (92%)
Query: 8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDV 67
K LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDV
Sbjct: 8 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 67
Query: 68 GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
GGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQ
Sbjct: 68 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 128 DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
DLPNAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 128 DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 176
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 308 bits (790), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 144/166 (86%), Positives = 156/166 (93%)
Query: 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70
LF +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQ
Sbjct: 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 219
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
DKIRPLWRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLP
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
NAM+ +E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 301 bits (770), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 140/160 (87%), Positives = 151/160 (94%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGGQDKIRPL
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPL 60
Query: 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
WRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLPNAM+ +
Sbjct: 61 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 121 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 300 bits (769), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 142/180 (78%), Positives = 158/180 (87%), Gaps = 1/180 (0%)
Query: 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
MG+ IS L LF +K+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
+ FTVWDVGGQD+IRPLW+HYFQNT GLIFVVDSNDRERI E DEL +ML DELR+AV
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
LL+FANKQDLPNAM++SE+TDKLGL SLR R WY+QA CAT G GLYEGLDWLS+ +S +
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 297 bits (761), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 139/160 (86%), Positives = 150/160 (93%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+SFTVWDVGG DKIRPL
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPL 62
Query: 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
WRHYFQNT GLIFVVDSNDRER+ EA++EL RML+EDELR+AVLLVFANKQDLPNAM+ +
Sbjct: 63 WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA 122
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
E+TDKLGLHSLR R WYIQA CATSG GLYEGLDWLS+ +
Sbjct: 123 EITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 162
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 297 bits (761), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 140/178 (78%), Positives = 155/178 (87%), Gaps = 3/178 (1%)
Query: 2 GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
G + SR+ F +K+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN+
Sbjct: 18 GSLFSRI---FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIC 74
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
FTVWDVGGQDKIRPLWRHYFQNT GLIFVVDSNDRER+ E+ DEL +ML EDELR+AVLL
Sbjct: 75 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL 134
Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
VFANKQD+PNAM VSE+TDKLGL LR R WY+QA CAT G GLY+GLDWLS +S +
Sbjct: 135 VFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 290 bits (743), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 156/175 (89%)
Query: 2 GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
G + S L L +KEMRILMVGLDAAGKT+ILYKLKLGEIVTTIPTIGFNVETVEYKN+S
Sbjct: 3 GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
FTVWDVGGQDKIRPLWRHY+QNT +IFVVDSNDR+RIGEA++EL +ML+EDE+R A+LL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILL 122
Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
VFANK DLP AMS+SEVT+KLGL +++ R+WY Q +CAT+G GLYEGLDWL+ N+
Sbjct: 123 VFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWLADNL 177
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 287 bits (735), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 129/178 (72%), Positives = 163/178 (91%), Gaps = 1/178 (0%)
Query: 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
MG+ +SRL LF +K++RILMVGLDAAGKTTILYK+KLGE+VTTIPTIGFNVETVE++N
Sbjct: 1 MGLYVSRLFNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRN 60
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
+SFTVWDVGGQDKIRPLWRHY+ NT GLIFVVDSNDRERI +A++ELHRM++E+EL++A+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAI 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177
+LVFANKQDLPNAMS +EVT+KL L+++R+R W+IQ+ CAT G GLYEG DWL+++++
Sbjct: 121 ILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 287 bits (734), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 131/177 (74%), Positives = 157/177 (88%), Gaps = 1/177 (0%)
Query: 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 59
MG+ S+L LF KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN
Sbjct: 1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKN 60
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV 119
+SFTVWDVGGQD+IR LWRHY++NT G+IFV+DSNDR RIGEA++ + RML+EDELR AV
Sbjct: 61 ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAV 120
Query: 120 LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
LVFANKQDLP AMS +E+T+KLGLHS+R R W+IQ+ CATSG+GLYEGL+WLS+N+
Sbjct: 121 WLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNL 177
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 283 bits (724), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 130/176 (73%), Positives = 155/176 (88%), Gaps = 1/176 (0%)
Query: 2 GMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
G+ S+L LF KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN+
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNI 61
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
SFTVWDVGGQD+IR LWRHY++NT G+IFVVDSNDR RIGEA++ + RML+EDELR A
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
LVFANKQDLP AMS +E+T+KLGLHS+R R W+IQA CATSG+GLYEGL+WLS+++
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 177
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 275 bits (702), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 127/174 (72%), Positives = 149/174 (85%), Gaps = 1/174 (0%)
Query: 2 GMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
G+ S+L LF KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVE V+Y N+
Sbjct: 2 GLFASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNI 61
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
SFTVWDVGGQD+IR LWRHY+ NT G+IFVVDSNDR RIGEA++ + RML+EDEL A
Sbjct: 62 SFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAW 121
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
LVFANKQDLP AMS +E+T+KLGLHS+R R W+IQA CATSG+GLYEGL+WLS+
Sbjct: 122 LVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSN 175
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 123/160 (76%), Positives = 146/160 (91%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
MRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKN+SFTVWDVGGQD+IR L
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSL 60
Query: 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
WRHY++NT G+IFVVDSNDR RIGEA++ + RML+EDELR A LVFANKQDLP AMS +
Sbjct: 61 WRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAA 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
E+T+KLGLHS+R R W+IQA CATSG+GLYEGL+WLS+++
Sbjct: 121 EITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLSNSL 160
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 121/178 (67%), Positives = 147/178 (82%), Gaps = 3/178 (1%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG V+S++ F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV
Sbjct: 1 MGKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 57
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
F VWDVGGQDKIRPLWRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++
Sbjct: 58 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
L+FANKQDLP+AM E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 118 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 117/168 (69%), Positives = 141/168 (83%)
Query: 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQD
Sbjct: 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
KIRPLWRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
AM E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +K
Sbjct: 438 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 120/177 (67%), Positives = 146/177 (82%), Gaps = 3/177 (1%)
Query: 2 GMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVS 61
G V+S++ F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV
Sbjct: 1 GKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVK 57
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
F VWDVGGQDKIRPLWRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++L
Sbjct: 58 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL 117
Query: 122 VFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
+FANKQDLP+AM E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 118 IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 174
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 260 bits (665), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 146/178 (82%), Gaps = 3/178 (1%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG V+S++ F KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV
Sbjct: 1 MGKVLSKI---FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNV 57
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
F VWDVGG DKIRPLWRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++
Sbjct: 58 KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
L+FANKQDLP+AM E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 118 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 175
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 253 bits (647), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 114/162 (70%), Positives = 137/162 (84%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQDKIRPL
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
WRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 253 bits (646), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 114/159 (71%), Positives = 136/159 (85%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQDKIRPL
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 60
Query: 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
WRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPH 120
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175
E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN
Sbjct: 121 EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 159
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 252 bits (644), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 114/163 (69%), Positives = 137/163 (84%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGG DKIRP
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
LWRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 121
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 122 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 164
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 252 bits (644), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 114/163 (69%), Positives = 137/163 (84%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
EMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGG DKIRP
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
LWRHY+ T GLIFVVD DR+RI EA+ ELHR++++ E+R+A++L+FANKQDLP+AM
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP 122
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
E+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 123 HEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 165
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 244 bits (624), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 111/161 (68%), Positives = 133/161 (82%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
RIL +GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKNV F VWDVGGQDKIRPLW
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
RHY+ T GLIFVVD DR+RI EA+ ELHR++++ E R+A++L+FANKQDLP+A E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178
+ +KLGL +R R WY+Q +CATSG GLYEGL WL+SN +
Sbjct: 122 IQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 162
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 212 bits (540), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 128/165 (77%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ IR
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
P WR Y+ NT +I+VVDS DR+RIG +K EL ML E+ELR+A+L+VFANKQD+ AM+
Sbjct: 61 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 120
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
SE+ + LGL +L+ R+W I AT G GL E ++WL + ++
Sbjct: 121 PSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 1 MGMVISRL--KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK 58
MG + S + K+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YK
Sbjct: 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK 60
Query: 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA 118
N+ VWD+GGQ IRP WR Y+ +T +IFVVDS D++R+ A ELH ML E+EL++A
Sbjct: 61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDA 120
Query: 119 VLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
LLVFANKQD P A+S SEV+ +L L L+ R W I A+ A G+G+ EGLDWL
Sbjct: 121 ALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 209 bits (532), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 124/158 (78%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
+EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG IR
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
P WR Y+ NT +I+VVDS DR+RIG +K EL ML E+ELR+A+L+VFANKQD+ AM+
Sbjct: 63 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT 122
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
SE+ + LGL +L+ R+W I AT G GL E ++WL
Sbjct: 123 SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 160
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 192 bits (489), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 128/179 (71%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG++ ++L LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + KN
Sbjct: 1 MGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNT 60
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
F +WD+GGQ+ +R W Y+ NT +I VVDS DRER+ K+EL+RML+ ++LR+A +
Sbjct: 61 HFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAV 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
L+FANKQD+ M+ +E++ L L S++ W+IQ+ CA +G+GL +GL+W++S + +
Sbjct: 121 LIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR 179
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 140/184 (76%), Gaps = 4/184 (2%)
Query: 1 MGMVISRLK----MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 56
MG ++ LK +L A +++R+LM+GLD AGKT+ILY+L LG++VTT+PT+G N+ET++
Sbjct: 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQ 62
Query: 57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELR 116
YKN+SF VWD+GGQ +RP WR YF +T +I+VVDS DR+R+G AK EL+ +L EDELR
Sbjct: 63 YKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR 122
Query: 117 EAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
+++LL+FANKQDLP+A S +E+ ++LG+ S+ R W I + + +G GL EG+DWL +
Sbjct: 123 KSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
Query: 177 SAKG 180
+G
Sbjct: 183 REQG 186
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 189 bits (481), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 128/179 (71%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG++ +R+ LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
F +WD+GGQ+ +R W Y+ NT +I VVDS DRERI ++EL++ML+ ++LR+A L
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
L+FANKQD+ M+V+E++ L L S++ +W+IQA CA +G+GL +GL+W+ S + +
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 84/179 (46%), Positives = 128/179 (71%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG++ +R+ LF +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNT 60
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
F +WD+GGQ+ +R W Y+ NT +I VVDS DRERI ++EL++ML+ ++LR+A L
Sbjct: 61 RFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
L+FANKQD+ M+V+E++ L L S++ +W+IQA CA +G+GL +GL+W+ S + +
Sbjct: 121 LIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 121/165 (73%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
+E RIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GG IR
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
P WR Y+ NT +I+VVDS DR+RIG +K EL L E+ELR+A+L+VFANKQD A +
Sbjct: 66 PYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXT 125
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
SE + LGL +L+ R+W I AT G GL E +WL + ++
Sbjct: 126 SSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 179 bits (455), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 118/162 (72%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
+ +E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N F +WD+GGQ+
Sbjct: 19 SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
+R W Y+ NT +I VVDS DRERI ++EL++ML+ ++LR+A LL+FANKQD+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 138
Query: 133 MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
M+V+E++ L L S++ +W+IQA CA +G+GL +GL+W+ S
Sbjct: 139 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 180
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 179 bits (453), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 117/160 (73%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
+E ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N F +WD+GGQ+ +R
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
W Y+ NT +I VVDS DRERI ++EL++ML+ ++LR+A LL+FANKQD+ M+
Sbjct: 80 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT 139
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174
V+E++ L L S++ +W+IQA CA +G+GL +GL+W+ S
Sbjct: 140 VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 176 bits (447), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG++ KM +E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++
Sbjct: 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
+WDVGGQ +R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A L
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
L+FANKQDLP A+S + + + L L S+R W IQ A +G+ L G+DWL ++S++
Sbjct: 123 LIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 176 bits (446), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG++ KM +E+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++
Sbjct: 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGF 62
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
+WDVGGQ +R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A L
Sbjct: 63 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 122
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
L+FANKQDLP A+S + + + L L S+R W IQ A +G+ L G+DWL ++S++
Sbjct: 123 LIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 176 bits (445), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 121/179 (67%)
Query: 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNV 60
MG++ KM +E+R+LM+GLD AGKTTIL K +I T PT+GFN++T+E++
Sbjct: 1 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGF 60
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL 120
+WDVGGQ +R WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A L
Sbjct: 61 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL 120
Query: 121 LVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
L+FANKQDLP A+S + + + L L S+R W IQ A +G+ L G+DWL ++S++
Sbjct: 121 LIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 167 bits (422), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 112/163 (68%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76
+R+LM+GLD AGKTTIL K ++ T PT+GFN++T+E++ +WDVGG +R
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSY 61
Query: 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS 136
WR+YF++T GLI+VVDS DR+R+ + + EL +L E+ L A LL+FANKQDLP A+S +
Sbjct: 62 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN 121
Query: 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
+ + L L S+R W IQ A +G+ L G+DWL ++S++
Sbjct: 122 AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 164
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 114/165 (69%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
+E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GGQ KIR
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
P WR YF+NT LI+V+DS DR+R E EL +L E++L +L+FANKQDL A
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 134
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
SE+ + L LH++R R W IQ+ A +G+G+ +G++W+ NV+AK
Sbjct: 135 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 114/165 (69%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
+E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GGQ KIR
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
P WR YF+NT LI+V+DS DR+R E EL +L E++L +L+FANKQDL A
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP 135
Query: 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
SE+ + L LH++R R W IQ+ A +G+G+ +G++W+ NV+AK
Sbjct: 136 ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 104/155 (67%)
Query: 25 DAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNT 84
D AGKTTIL K ++ T PT+GFN++T+E++ +WDVGGQ +R WR+YF++T
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL 144
GLI+VVDS DR+R + + EL +L E+ L A LL+FANKQDLP A+S + + + L L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
Query: 145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179
S+R W IQ A +G+ L G+DWL ++S++
Sbjct: 147 DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 153 bits (386), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 110/161 (68%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GGQ KIRP
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRP 63
Query: 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
WR YF+NT LI+V+DS DR+R E EL +L E++L +L+FANKQDL A
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
SE+ + L LH++R R W IQ+ A +G+G+ +G++W+ NV
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 149 bits (377), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 109/161 (67%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75
E+RIL++GLD AGKTT+L +L +I PT GFN+++V+ + VWD+GG KIRP
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRP 63
Query: 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV 135
WR YF+NT LI+V+DS DR+R E EL +L E++L +L+FANKQDL A
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA 123
Query: 136 SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
SE+ + L LH++R R W IQ+ A +G+G+ +G++W+ NV
Sbjct: 124 SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 110/166 (66%), Gaps = 4/166 (2%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKL--GEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72
KE+ +L +GLD +GKTTI+ KLK + +PTIGF++E + ++SFTV+D+ GQ +
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL--REAVLLVFANKQDLP 130
R LW HY++ +IFV+DS+DR R+ AK+EL +L+ ++ R +L FANK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
+A++ +V+ L L +++ + W+I A+ A G+GL EG+DWL +
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+++EM + +VGL +GKTT + + G+ IPT+GFN+ V NV+ +WD+GGQ
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQP 78
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R +W Y + + +++++D+ DRE+I +++ELH +L + +L+ +LV NK+DLPN
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
A+ ++ +K+ L +++ R + + L WL
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 116 bits (290), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Query: 8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFTVWD 66
K LF ++EM + +VGL +GKTT + + G+ IPT+GFN+ + NV+ +WD
Sbjct: 23 FKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 82
Query: 67 VGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK 126
+GGQ + R +W Y + ++++VD+ D+E+I +K+ELH +L + +L+ +LV NK
Sbjct: 83 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 142
Query: 127 QDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
+DLP A+ E+ +K+ L +++ R + + L WL
Sbjct: 143 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 99/175 (56%), Gaps = 10/175 (5%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNVSFTVWDVGGQ 70
++ +++++M GLD +GKTTI+ ++K + + T+G+NVET E V+FTV+D+GG
Sbjct: 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGA 73
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-------LLVF 123
K R LW Y+ N +IFVVDS+D R+ K E+ ML +++R + L F
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133
Query: 124 ANKQDLPNAMSVSEVTDKLGLHSLR-QRRWYIQAACATSGQGLYEGLDWLSSNVS 177
ANK D A + +E+ + L L +L + I A+ G G++EG WL S
Sbjct: 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 94/161 (58%), Gaps = 1/161 (0%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+++EM + +VGL +GKTT + + G+ IPT+GFN+ + NV+ +WD+GGQ
Sbjct: 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 78
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R +W Y + ++++VD+ D+E+I +K+ELH +L + +L+ +LV NK+DLP
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
A+ E+ +K+ L +++ R + + L WL
Sbjct: 139 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74
K ++L +GLD AGKTT+L+ LK + T PT E + N+ FT +D+GG + R
Sbjct: 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQAR 81
Query: 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
LW+ YF +G++F+VD+ D ER EA+ EL + + EL++ ++ NK D PNA+S
Sbjct: 82 RLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS 141
Query: 135 VSEVTDKLGLHSLR-------QRRWYIQAACATSGQGLYEGLDWLSSNV 176
+E+ LGL + QR + G E WLS +
Sbjct: 142 EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77
++L +GLD AGKTT+L+ LK + T PT E + N+ FT +D+GG + R LW
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLW 62
Query: 78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137
+ YF +G++F+VD+ D ER EA+ EL + + EL++ ++ NK D PNA+S +E
Sbjct: 63 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAE 122
Query: 138 VTDKLGLHSLR-------QRRWYIQAACATSGQGLYEGLDWLS 173
+ LGL + QR + G E WLS
Sbjct: 123 LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 165
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
+K +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG +
Sbjct: 20 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 79
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
R +W++Y +G++F+VD D ER+ E+K+EL +++++ + +L+ NK D P A+
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 139
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
S + + GL+ L R + QG EG W++ +
Sbjct: 140 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 194
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
+K +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG +
Sbjct: 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQA 82
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
R +W++Y +G++F+VD D ER+ E+K+EL +++++ + +L+ NK D P A+
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
S + + GL+ L R + QG EG W++ +
Sbjct: 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
+K +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG +
Sbjct: 14 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQA 73
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
R +W++Y +G++F+VD D ER+ E+K+EL +++++ + +L+ NK D P A+
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 133
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
S + + GL+ L R + QG EG W++ +
Sbjct: 134 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 188
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 93/175 (53%), Gaps = 12/175 (6%)
Query: 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73
+K +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+GG ++
Sbjct: 33 KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQA 92
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
R +W++Y +G++F+VD D R+ E+K EL+ +++++ + +L+ NK D +A+
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAI 152
Query: 134 SVSEVTDKLGLHS------------LRQRRWYIQAACATSGQGLYEGLDWLSSNV 176
S ++ + GL+ L R + QG EG WLS +
Sbjct: 153 SEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYI 207
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 127 QDLPNAMSVSEVTDKLGLHSL 147
DL V T K SL
Sbjct: 124 SDLTTKKVVDNTTAKEFADSL 144
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 67
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 68 QERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK----LLVGNK 123
Query: 127 QDLPNAMSVSEVTDKLGLHSL 147
DL V T K SL
Sbjct: 124 SDLTTKKVVDNTTAKEFADSL 144
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 17 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFL 156
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 7 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 21/145 (14%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGGQ 70
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD GQ
Sbjct: 1 KLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 58
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQ 127
++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 59 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKC 114
Query: 128 DLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 115 DLTTKKVVDYTTAKEFADSLGIPFL 139
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 7 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 120
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFL 146
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 26 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 83
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 84 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 139
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 140 CDLTTKKVVDYTTAKEFADSLGIPFL 165
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 34 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 91
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 92 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 147
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 148 CDLTTKKVVDYTTAKEFADSLGIPFL 173
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 17 FKLLLIGDSGVGKNCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 74
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK
Sbjct: 75 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNK 130
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 131 CDLTTKKVVDYTTAKEFADSLGIPFL 156
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F ++TVE K V +WD G
Sbjct: 9 FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ +HG+I V D D+E K E+ R + L+ L+ NK
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 127 QDLPN 131
DL +
Sbjct: 123 CDLKD 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F ++TVE K V +WD G
Sbjct: 9 FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 66
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ +HG+I V D D+E K E+ R + L+ L+ NK
Sbjct: 67 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 122
Query: 127 QDLPN 131
DL +
Sbjct: 123 CDLKD 127
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F ++TVE K V +WD G
Sbjct: 22 FKLLLIGNSGVGKSCLL--LRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 79
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ +HG+I V D D+E K E+ R + L+ L+ NK
Sbjct: 80 QERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNK 135
Query: 127 QDLPN 131
DL +
Sbjct: 136 CDLKD 140
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
M+IL++G GK+ +L + K T I F ++TV+ K V +WD GQ+
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R + Y++ G+I V D D ER + + ++E EA LL+ NK D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
M+IL++G GK+ +L + K T I F ++TV+ K V +WD GQ+
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R + Y++ G+I V D D ER + + ++E EA LL+ NK D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
M+IL++G GK+ +L + K T I F ++TV+ K V +WD GQ+
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R + Y++ G+I V D D ER + + ++E EA LL+ NK D+
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 124
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 17 MRILMVGLDAAGKTTILYKLK----LGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQ 70
++L++G GK+++L + G +TTI + F + TVE + V +WD GQ
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG-VDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R + Y++ THG+I V D E K LH + + ++ NK D P
Sbjct: 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDP 126
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 16/122 (13%)
Query: 19 ILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
+L++G GK+ +L L+ + T I TIG F + T+E K + +WD GQ+
Sbjct: 1 LLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 58
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQD 128
+ R + Y++ HG+I V D D+E K E+ R SE+ + L+ NK D
Sbjct: 59 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGNKCD 114
Query: 129 LP 130
L
Sbjct: 115 LT 116
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETVEY--KNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+E K + +WD G
Sbjct: 9 FKLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 66
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D D+E K E+ R SE+ + L+ K
Sbjct: 67 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK----LLVGIK 122
Query: 127 QDLP-----NAMSVSEVTDKLGLHSL 147
DL + + E D LG+ L
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGIPFL 148
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG--FNVETV--EYKNVSFTVWDVGG 69
++L++G GK+ +L L+ + T I TIG F + T+ E K V +WD G
Sbjct: 10 FKLLLIGDSGVGKSCLL--LRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAG 67
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANK 126
Q++ R + Y++ HG+I V D DR+ K E+ R E+ + L+ NK
Sbjct: 68 QERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNK----LLVGNK 123
Query: 127 QDLPNAMSVS-----EVTDKLGL 144
DL + V+ E+ D G+
Sbjct: 124 CDLVSKRVVTSDEGRELADSHGI 146
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNV--SFTVWDVGG 69
+E+++ ++G GK++I+++ I PTIG F +TV+Y+N F +WD G
Sbjct: 4 RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
Q++ R L Y++ + I V D E K+ + R L + V+ + NK DL
Sbjct: 64 QERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKCDL 122
Query: 130 PNAMSVSE 137
+ V E
Sbjct: 123 TDVREVME 130
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
++L++G GKT +L++ +T I TIG F + T+E K + +WD GQ+
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + Y++ G++ V D + + ++ + R + E + ++ NK D+ +
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 127
Query: 132 AMSVS-EVTDKLGL 144
VS E +KL L
Sbjct: 128 KRQVSKERGEKLAL 141
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 18 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQDK 72
+IL++G GK+ +L + K T I F ++TV+ K V +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
R + Y++ G+I V D D ER + + ++E EA LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDITD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNVSFTVWDVGGQD 71
++L++G GKT +L++ +T I TIG F + T+E K + +WD GQ+
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + Y++ G++ V D + + ++ + R + E + ++ NK D+ +
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI-RNIEEHASADVEKMILGNKCDVND 125
Query: 132 AMSVS-EVTDKLGL 144
VS E +KL L
Sbjct: 126 KRQVSKERGEKLAL 139
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 18 RILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQDK 72
+IL++G GK+ +L + K T I F ++TV+ K V +WD GQ++
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
R + Y++ G+I V D D ER + + ++E EA LL+ NK D
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTD-ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNV--SFTVWDV 67
A +E+++ ++G GK++I+++ I PTIG F +TV+Y+N F +WD
Sbjct: 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 62
Query: 68 GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
G ++ R L Y++ + I V D E K+ + R L + V+ + NK
Sbjct: 63 AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV-RELRQHGPPSIVVAIAGNKC 121
Query: 128 DLPNAMSVSE 137
DL + V E
Sbjct: 122 DLTDVREVME 131
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T +PT G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 176 TRVPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYK------------NVS 61
+++L +G GKTT LY+ K T I F + V Y V
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
+WD GQ++ R L +F++ G + + D ++ ++ + ++ + ++
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 122 VFANKQDLPNAMSVS-----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
+ NK DLP+ V+ E+ DK G+ Y + + AT GQ + + ++ L
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIP-------YFETSAAT-GQNVEKAVETL 193
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---VSFTVWDVGGQ 70
+IL++G + GKT+ L++ + T+G F V+T+ Y+N + +WD GQ
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGQ 64
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R + Y++ G I + D + E +D ++ + VLLV NK D+
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV-GNKCDME 123
Query: 131 NAMSVS-----EVTDKLGLH 145
+ VS ++ D LG
Sbjct: 124 DERVVSSERGRQLADHLGFE 143
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFN----VETVEYKNVSFTVWDVGGQ 70
++++VG GKT +L + K G + T I T+G + V V+ V +WD GQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQ 127
++ R + Y+++ H L+ + D ++ + E+H D L++ NK
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLLGNKV 126
Query: 128 D 128
D
Sbjct: 127 D 127
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNVSFTVWDVGGQD 71
+I+++G GKT + Y+ G T TIG + ++ + + +WD GQ+
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 72 KIR-PLWRHYFQNTHGLIFVVDSNDRER-------IGEAKDELHRMLSEDELREAVLLVF 123
+ R + +HY++N H ++FV D + I E K L L+ D R ++
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHL---LANDIPR----ILV 142
Query: 124 ANKQDLPNAMSVS 136
NK DL +A+ V
Sbjct: 143 GNKCDLRSAIQVP 155
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 67 ERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 122
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 123 DLANKRAV 130
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 66
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 67 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 122
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 123 DLANKRAV 130
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 122 DLANKRAV 129
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 16 EMRILMVGLDAAGKTTILYKLK---LGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQ 70
+++++++G GKT+++ + E + + F ++TVE K + +WD GQ
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ + Y+++ G+I V D +E + + +M+ + +A LL+ NK D
Sbjct: 86 ERFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCE 144
Query: 131 NAMSVS 136
++
Sbjct: 145 TDREIT 150
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GKT+++ + + I T+G + T + K V+ +WD GQ+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
+ L Y+++++G I V D D + + K+ EL +ML E L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 129 LPNAMSVS 136
L VS
Sbjct: 123 LEKERHVS 130
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNVSFTVWDVGGQD 71
+I+++G GKT + Y+ G T TIG + ++ + + +WD GQ+
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 72 KIR-PLWRHYFQNTHGLIFVVDSNDRER-------IGEAKDELHRMLSEDELREAVLLVF 123
+ R + +HY++N H ++FV D + I E K L L+ D R ++
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPR----ILV 133
Query: 124 ANKQDLPNAMSVS 136
NK DL +A+ V
Sbjct: 134 GNKCDLRSAIQVP 146
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 146 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
+E++RM +L +++ +++F NK+DL P + E T G
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 262
Query: 145 HSLRQRRWYIQA 156
++ + YIQ
Sbjct: 263 NTYEEAAAYIQC 274
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
+E++RM +L +++ +++F NK+DL P + E T G
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 269
Query: 145 HSLRQRRWYIQA 156
++ + YIQ
Sbjct: 270 NTYEEAAAYIQC 281
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKL 38
A KE+++L++G +GK+TI+ ++K+
Sbjct: 6 AAKEVKLLLLGAGESGKSTIVKQMKI 31
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 153 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
+E++RM +L +++ +++F NK+DL P + E T G
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 269
Query: 145 HSLRQRRWYIQA 156
++ + YIQ
Sbjct: 270 NTYEEAAAYIQC 281
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKL 38
A KE+++L++G +GK+TI+ ++K+
Sbjct: 6 AAKEVKLLLLGAGESGKSTIVKQMKI 31
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 183 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 242
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 243 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 279
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 147 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 206
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 207 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 243
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
+ T G +K+++F ++DVGGQ R W H F+ +IF V +D + + +
Sbjct: 150 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 209
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
E++RM +L +++ +++F NK+DL
Sbjct: 210 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 150 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 209
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 210 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 246
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 151 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 210
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 211 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 247
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 179 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 238
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 239 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 275
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 153 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 212
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 213 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 249
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 152 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 211
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 212 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 248
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 148 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 207
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 208 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 244
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 145 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 204
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 205 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 241
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 146 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 205
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 206 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 242
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 21/132 (15%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGGQ R W H F+ +IF V +D + +
Sbjct: 176 TRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL--------PNAMSVSEVTDKLGL 144
+E++RM +L +++ +++F NK+DL P + E T G
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICYPEYT---GS 292
Query: 145 HSLRQRRWYIQA 156
++ + YIQ
Sbjct: 293 NTYEEAAAYIQC 304
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKL 38
A KE+++L++G +GK+TI+ ++K+
Sbjct: 29 AAKEVKLLLLGAGESGKSTIVKQMKI 54
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNVSFT--V 64
K+ +K ++I++VG A GKT +L GEI T +PT+ N V +YKN F +
Sbjct: 15 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHL 74
Query: 65 WDVGGQ---DKIRPL 76
WD GQ D++RPL
Sbjct: 75 WDTAGQEEYDRLRPL 89
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
+++++G GKT+++ + K + T F + + K V+ +WD GQ+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
+ L Y+++++G I V D D + + K+ EL +ML E L + NK D
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 122
Query: 129 LPNAMSVS 136
L VS
Sbjct: 123 LEKERHVS 130
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVGGQD 71
+++++G GKT+++ + K + T F + + K V+ +WD GQ+
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQD 128
+ L Y+++++G I V D D + + K+ EL +ML E L + NK D
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCIVGNKID 136
Query: 129 LPNAMSVS 136
L VS
Sbjct: 137 LEKERHVS 144
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV-EYKNVSFT--VWDVGG 69
+K ++I++VG A GKT +L GEI T +PT+ N V +YKN F +WD G
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 70 Q---DKIRPL 76
Q D++RPL
Sbjct: 81 QEEYDRLRPL 90
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 122 DLANKRAV 129
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 122 DLANKRAV 129
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 122 DLANKRAV 129
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 17 MRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIGFNVET--VEYKNVSFTVWDVGGQ 70
++IL++G GK+++L + E+ TI + F V+T V+ +WD GQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R L Y++ G+I V D R+ + + L+ + + + V + NK D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165
N EV GL R+ A A + G+
Sbjct: 135 N----REVDRNEGLKFARKHSXLFIEASAKTCDGV 165
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 122 DLANKRAV 129
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNVSFTVWDVGGQD 71
++L++G + GKT+ L++ + T+G F V+TV K V +WD GQ+
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R + Y++ G I + D + E +D ++ + V+LV NK D+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV-GNKCDM 140
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
+ T G +K+++F ++DVGGQ R W H F+ +IF V +D + + +
Sbjct: 181 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 240
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
E++RM L ++ +++F NK+DL
Sbjct: 241 EMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDL 275
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F ++V + V F +WD GQ
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQ 67
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D ++E AK EL R S V+ + NK
Sbjct: 68 ERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKA 123
Query: 128 DLPN 131
DL N
Sbjct: 124 DLAN 127
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETV--EYKNVSFTVWDVGGQD 71
++L++G + GKT+ L++ + T+G F V+TV K + +WD GQ+
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + Y++ G + + D ++E +D ++ + V+LV NK DL +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV-GNKCDLED 141
Query: 132 AMSVS-----EVTDKLGLH 145
V + D LG
Sbjct: 142 ERVVPAEDGRRLADDLGFE 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 66 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 121
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 122 DLANKRAV 129
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 17 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ L++G GK+ +L+ K K T G + V K V +WD GQ+
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
+ R + R Y++ G + V D RE + L RML+ + V+++ NK+DL
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 128
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQD 71
++++VG + GKT ++ + K G TIG F ++T+E K V +WD GQ+
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDR 96
+ R + + Y+++ +G I D R
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKR 114
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 17 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ L++G GK+ +L+ K K T G + V K V +WD GQ+
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
+ R + R Y++ G + V D RE + L RML+ + V+++ NK+DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 127
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DV GQ R W H F+ +IF V +D + +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 273
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 28/176 (15%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
+++L +G GKTT LY+ K T I F + V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
+WD G ++ R L +F++ G + + D ++ ++ + ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVS-----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172
+ NK DLP+ V+ E+ +K G+ Y + + AT GQ + + ++ L
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIP-------YFETSAAT-GQNVEKSVETL 179
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVG Q R W H F+ +IF V +D + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F +TV + V F +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + E AK+ EL R S + V+ + NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN----IVIALSGNKA 120
Query: 128 DLPNAMSV 135
DL N +V
Sbjct: 121 DLANKRAV 128
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
+PT G + ++V F + DVGGQ R W H F+N ++F +V+S+
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R+ E+K +++ + + +++F NK+DL
Sbjct: 240 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 274
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
+++L +G GKTT LY+ K T I F + V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
+WD G ++ R L +F++ G + + D ++ ++ + ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
+ NK DLP+ V+E
Sbjct: 132 LIGNKADLPDQREVNE 147
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 44 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDS 93
+PT G + ++V F + DVGGQ R W H F+N ++F +V+S
Sbjct: 171 CVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 230
Query: 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
++ R+ E+K +++ + + +++F NK+DL
Sbjct: 231 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 266
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 21/26 (80%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKL 38
AR+E+++L++G +GK+T + ++++
Sbjct: 24 ARRELKLLLLGTGESGKSTFIKQMRI 49
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
+PT G + ++V F + DVGGQ R W H F+N ++F +V+S+
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R+ E+K +++ + + +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
+PT G + ++V F + DVGGQ R W H F+N ++F +V+S+
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R+ E+K +++ + + +++F NK+DL
Sbjct: 212 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 21/26 (80%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKL 38
AR+E+++L++G +GK+T + ++++
Sbjct: 4 ARRELKLLLLGTGESGKSTFIKQMRI 29
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN---VSFTVWDVGGQ 70
+IL++G + GKT+ L++ + T+G F V+T+ Y+N + +WD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGL 67
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R + Y++ G I D + E +D ++ + VLLV NK D
Sbjct: 68 ERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV-GNKCDXE 126
Query: 131 NAMSVS-----EVTDKLGLH 145
+ VS ++ D LG
Sbjct: 127 DERVVSSERGRQLADHLGFE 146
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 17 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ L++G GK+ +L+ K K T G V V K V +WD GQ+
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
+ R + R Y++ G + V D RE L R L+ + V+++ NK+DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI---VVILCGNKKDL 142
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF----------VVDSN 94
+PT G + ++V F + DVGGQ R W H F+N ++F +V+S+
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
+ R+ E+K +++ + + +++F NK+DL
Sbjct: 238 NENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 272
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 21/26 (80%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKL 38
AR+E+++L++G +GK+T + ++++
Sbjct: 30 ARRELKLLLLGTGESGKSTFIKQMRI 55
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F +TV + V F +WD GQ
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 62
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + + AK+ EL R S + V+ + NK
Sbjct: 63 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKA 118
Query: 128 DLPNAMSV 135
DL + +V
Sbjct: 119 DLASKRAV 126
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DV GQ R W H F+ +IF V +D + +
Sbjct: 177 TRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 236
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 237 DEEMNRMHESMKLFDSICNNKCFTDTSIILFLNKKDL 273
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLG---EIVTTIPTIGFNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G E + F +TV + V F +WD GQ
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQ 64
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + + AK+ EL R S + V+ + NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKA 120
Query: 128 DLPNAMSV 135
DL + +V
Sbjct: 121 DLASKRAV 128
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +K++ F ++DVGG R W H F+ +IF V +D + +
Sbjct: 176 TRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAE 235
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+E++RM +L +++ +++F NK+DL
Sbjct: 236 DEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVE--TVEYKNVSFTVWDVGGQD 71
++++++G A GK++I+ + + PTIG F + T+ V F +WD GQ+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK---DELHRMLSED 113
+ L Y++N + V D + +A+ ELH S+D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD 108
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
+++L +G GKTT LY+ K T I F + V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
+WD G ++ R L +F++ G + D ++ ++ ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
+ NK DLP+ V+E
Sbjct: 132 LIGNKADLPDQREVNE 147
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 20/133 (15%)
Query: 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVET--VEYKNVSFT 63
K ++K +I++ G A GK++ L +L E I T+G F ++T V+ +
Sbjct: 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQ 80
Query: 64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDS-------NDRERIGEAKDELHRMLSEDELR 116
+WD GQ++ R + + YF+ G++ + D N RE + +D H +
Sbjct: 81 LWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP----- 135
Query: 117 EAVLLVFANKQDL 129
+++ NK D+
Sbjct: 136 ---IMLVGNKADI 145
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQD 71
+I+++G GKT ++ + G TIG F ++TVE + V +WD GQ+
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + + Y+++ + LI D E E R + + + + ++ NK DL
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAE 145
Query: 132 AMSVSE 137
VS+
Sbjct: 146 RREVSQ 151
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKN------------VS 61
+++L +G GKTT LY+ K T I F + V Y V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
+WD G ++ R L +F++ G + D ++ ++ ++ + ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
+ NK DLP+ V+E
Sbjct: 132 LIGNKADLPDQREVNE 147
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
+ T G +K+++F +DVGGQ R W H F+ +IF V +D + + +
Sbjct: 175 VKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 234
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
E +R +L +++ +++F NK+DL
Sbjct: 235 EXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDL 269
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 43 TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEA 102
T + T G +KN+ F ++DVGGQ R W H F++ +IF V + +++
Sbjct: 157 TRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHE 216
Query: 103 KDELHRMLSEDELREAV----------LLVFANKQDL 129
+ +RM L +++ +++F NK+DL
Sbjct: 217 DETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDL 253
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKNV--SFTVWDV 67
A +E+++ ++G GK++I+ + I PTIG F +TV N F +WD
Sbjct: 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDT 79
Query: 68 GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127
GQ++ L Y++ + + V D ++ K + + L E V+ + NK
Sbjct: 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWV-KELKEHGPENIVMAIAGNKC 138
Query: 128 DL 129
DL
Sbjct: 139 DL 140
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 46 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDE 105
PT G + +K++ F ++DVGGQ R W F+ +IF V +D +++ +
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 106 LHRMLSEDELREAV----------LLVFANKQDL 129
+RM +L +++ +++F NK+DL
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 259
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 17 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ L++G GK+ +L+ K K T G + V K V +WD G +
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
+ R + R Y++ G + V D RE + L RML+ + V+++ NK+DL
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI---VIILCGNKKDL 125
Query: 130 P 130
Sbjct: 126 D 126
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---VSFTVWDVGGQ 70
+I+++G GK+ +L + E + + TIG F ++++ KN + +WD GQ
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R + Y++ G + V D + E ++ + L ++ V+L+ NK DL
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSF-ENIEKWLKELRDNADSNIVILLVGNKSDLK 126
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 46 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN--------DRE 97
PT G + E KNV F + DVGGQ R W F + ++F+V S+ DR+
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 98 --RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
R+ E+ + +++ +++F NK DL
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 46 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN--------DRE 97
PT G + E KNV F + DVGGQ R W F + ++F+V S+ DR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 98 --RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
R+ E+ + +++ +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETV--EYKNVSFTVWDVGGQ 70
+ +++++G A GK++++ + G+ TIG F +TV + V F +WD G
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGL 64
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD---ELHRMLSEDELREAVLLVFANKQ 127
++ L Y++ I V D + + AK+ EL R S + V+ + NK
Sbjct: 65 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPN----IVIALAGNKA 120
Query: 128 DLPNAMSV 135
DL + +V
Sbjct: 121 DLASKRAV 128
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 13 ARKEMR--ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---VSFTVWDV 67
ARK + +L VGL +GKT + +L G+ T +I + + N S T+ D+
Sbjct: 2 ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDL 61
Query: 68 GGQDKIR-PLWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSED-ELREA-VLLVF 123
G + +R L + + ++FVVDS +R + + + L+++L + L+ + LL+
Sbjct: 62 PGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIA 121
Query: 124 ANKQDLPNAMSVSEVTDKL--GLHSLRQRR 151
NKQD+ A S + +L L++LR R
Sbjct: 122 CNKQDIAMAKSAKLIQQQLEKELNTLRVTR 151
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNVSFTVWDVGGQD 71
+ +++G GK+ +L++ + + P TIG T V + + +WD GQ+
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
+ R + R Y++ G + V D R L R L+ V+++ NK DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADL 132
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD 104
+ T G +K+++F ++DVGGQ R W H F+ +IF+ + + + D
Sbjct: 149 VKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDD 208
Query: 105 ELHRMLSEDELREAV----------LLVFANKQDL 129
E++RM L ++ +++F NK+D+
Sbjct: 209 EVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYK------------NVS 61
++ L +G GKT++LY+ G+ + I T+G F + V Y+ +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL 121
+WD G ++ R L +F++ G + + D + + ++ + ++ ++
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 122 VFANKQDLPNAMSVSE 137
+ NK DL + +V E
Sbjct: 132 LCGNKSDLEDQRAVKE 147
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+I+++G GK+ +L + E + + TIG T +E K + +WD GQ+
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 74 RYRAITSAYYRGAVGALIVYD 94
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE +PT+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNVSFTVWDVGGQD 71
+ +++G GK+ +L++ + + P TIG T V + + +WD GQ
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL--HRMLSEDELREAVLLVFANKQDL 129
+ R + R Y++ G + V D R L R L+ V+++ NK DL
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADL 147
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRM 109
V+F ++DVGGQ R W F + +IFVV S N R+ EA + +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 110 LSEDELREAVLLVFANKQDL 129
+ LR +++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRM 109
V+F ++DVGGQ R W F + +IFVV S N R+ EA + +
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 262
Query: 110 LSEDELREAVLLVFANKQDL 129
+ LR +++F NKQDL
Sbjct: 263 WNNRWLRTISVILFLNKQDL 282
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRM 109
V+F ++DVGGQ R W F + +IFVV S N R+ EA + +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 110 LSEDELREAVLLVFANKQDL 129
+ LR +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE +PT+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRM 109
V+F ++DVGGQ R W F + +IFVV S N R+ EA + +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 110 LSEDELREAVLLVFANKQDL 129
+ LR +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRM 109
V+F ++DVGGQ R W F + +IFVV S N R+ EA + +
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276
Query: 110 LSEDELREAVLLVFANKQDL 129
+ LR +++F NKQDL
Sbjct: 277 WNNRWLRTISVILFLNKQDL 296
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 10/126 (7%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ +++G GK+ +L + +T G + ++ K + +WD GQ+
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD--ELHRMLSEDELREAVLLVFANKQDL 129
R + R Y++ G + V D RE E R S + V+++ NK DL
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM---VIMLIGNKSDL 138
Query: 130 PNAMSV 135
+ V
Sbjct: 139 ESRRDV 144
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 9/155 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNVSFTVWDVGGQ 70
+ +++ +G A GKT+I+ + TIG + + ++ V +WD GQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R L Y +++ I V D +R+ + +L+E ++ ++ + NK DL
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE-RGKDVIIALVGNKTDLG 119
Query: 131 NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165
+ + +VT + G ++ A +G +
Sbjct: 120 D---LRKVTYEEGXQKAQEYNTXFHETSAKAGHNI 151
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 14 RKEM--RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKN-----VSFTVW 65
R+E+ +I ++G GKTT + ++ G T+G V + + + F VW
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVW 66
Query: 66 DVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDEL---REAVLLV 122
D GQ+K L Y+ G I D R L R + E + EA ++V
Sbjct: 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC----QNLARWVKEFQAVVGNEAPIVV 122
Query: 123 FANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATS 161
ANK D+ N +S+ KL + L+ + + Y + + T+
Sbjct: 123 CANKIDIKNRQKISK---KLVMEVLKGKNYEYFEISAKTA 159
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV----------DSNDRERIGEAKDELH 107
K++ F + DVGGQ R W +F + IFV + + R+ E+
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFK 218
Query: 108 RMLSEDELREAVLLVFANKQDL 129
+ + + L+ AV L+F NK DL
Sbjct: 219 DIXTNEFLKGAVKLIFLNKXDL 240
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71
+ +++G GK+ +L + +T G + T++ K + +WD GQ+
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD--ELHRMLSEDELREAVLLVFANKQDL 129
R + R Y++ G + V D R+ E R S + V+++ NK DL
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNM---VIMLIGNKSDL 127
Query: 130 PNAMSVSE 137
+ V +
Sbjct: 128 ESRREVKK 135
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+I+++G GK+ +L + E + + TIG T VE K + +WD G +
Sbjct: 11 FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + Y++ G + V D + L + + AV L+ NK DL +
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLI-GNKSDLAH 129
Query: 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATS 161
+V TD+ ++ + + + + S
Sbjct: 130 LRAVP--TDEAKNFAMENQMLFTETSALNS 157
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVE-TVEYKNVSFTVWDVGGQDK 72
+++++G AGK++++ + + V +TI F+ V V F +WD GQ++
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132
L Y++ I V D ++ AK + + ++ V+ + NK DL +A
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLDA 132
Query: 133 MSVS 136
V+
Sbjct: 133 RKVT 136
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD GQ+
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 90 RYRAITSAYYRGAVGALLVYD 110
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 38/196 (19%)
Query: 12 FARKEM--RILMVGLDAAGKTT----ILYKL---KLGEIVTTIP----TIGFNVETVEYK 58
FA +E+ +I+ G +GKTT I K+ + GE+V+ T+ F+ ++
Sbjct: 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67
Query: 59 NVS-----FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS-NDRERIGEAKDELHRMLSE 112
V F ++ V GQ + + G++FV DS +R R A E R + E
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR---ANAESMRNMRE 124
Query: 113 D------ELREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQRRWYIQAACATSGQ 163
+ L + +++ NK+DLP+A+ V V D G ++ + A AT G+
Sbjct: 125 NLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-------KFPVLEAVATEGK 177
Query: 164 GLYEGLDWLSSNVSAK 179
G++E L +S V A+
Sbjct: 178 GVFETLKEVSRLVLAR 193
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 46 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN--------DRE 97
PT G + E KNV F + DVGG R W F + ++F+V S+ DR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 98 --RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
R+ E+ + +++ +++F NK DL
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 256
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD GQ+
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 81 RYRAITSAYYRGAVGALLVYD 101
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--VSFTVWDVGGQD 71
+++++G GKT +L + E + TIG F+ TV V +WD G +
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + Y++ G + V D + + L + E V+LV NK DL
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLSQ 144
Query: 132 AMSV 135
A V
Sbjct: 145 AREV 148
>pdb|2Q3F|A Chain A, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
pdb|2Q3F|B Chain B, X-Ray Crystal Structure Of Putative Human Ras-Related
Gtp Binding D In Complex With Gmppnp
Length = 181
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 18 RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-VSFTVWDVGGQ-D 71
RIL+ GL +GK++I +K E + T E V + V+F +WD GQ D
Sbjct: 6 RILLXGLRRSGKSSIQKVVFHKXSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQID 65
Query: 72 KIRPLWRH--YFQNTHGLIFVVDSND 95
P + + F+ T LIFV+DS D
Sbjct: 66 FFDPTFDYEXIFRGTGALIFVIDSQD 91
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--VSFTVWDVGGQD 71
+++++G GKT +L + E + TIG F+ TV V +WD G +
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131
+ R + Y++ G + V D + + L + E V+LV NK DL
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLV-GNKSDLSQ 129
Query: 132 AMSV 135
A V
Sbjct: 130 AREV 133
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of Ras-
Related Gtp-Binding Protein C
Length = 196
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 7 RLKMLFARKEMRILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-VS 61
R + F + RIL++GL +GK++I +K+ E + T + + + V+
Sbjct: 11 RENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVN 70
Query: 62 FTVWDVGGQ-DKIRPLWRH--YFQNTHGLIFVVDSND 95
F +WD GQ D P + + F+ T LI+V+D+ D
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD 107
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNVSFTVWDVGG 69
++ +++ +G + GKT+++ + T TIG + + +E + + +WD G
Sbjct: 5 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
Q++ R L Y +++ + V D + + + + +E + ++++ NK DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDL 123
Query: 130 PNAMSVS 136
+ VS
Sbjct: 124 ADKRQVS 130
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNVSFTVWDVGG 69
++ +++ +G + GKT+++ + T TIG + + +E + V +WD G
Sbjct: 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129
Q++ R L Y +++ + V D + + + + +E + ++++ NK DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDL 131
Query: 130 PNAMSVS 136
+ VS
Sbjct: 132 SDKRQVS 138
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD GQ+
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 66 RYRRITSAYYRGAVGALLVYD 86
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQDKI 73
+++MVG GK+ + + E V PT + ++ + V + D GQ+
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
+ +YF++ G + V + E D ++L E L+ NK DL +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 135
Query: 134 SVS 136
VS
Sbjct: 136 QVS 138
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQDKI 73
+++MVG GK+ + + E V PT + ++ + V + D GQ+
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
+ +YF++ G + V + E D ++L E L+ NK DL +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 134 SVS 136
VS
Sbjct: 126 QVS 128
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS-NDRERIGEAKDELHRMLSED------E 114
F ++ V GQ + + G++FV DS +R R A E R E+
Sbjct: 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR---ANAESXRNXRENLAEYGLT 132
Query: 115 LREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171
L + +++ NK+DLP+A+ V V D G ++ + A AT G+G++E L
Sbjct: 133 LDDVPIVIQVNKRDLPDALPVEXVRAVVDPEG-------KFPVLEAVATEGKGVFETLKE 185
Query: 172 LSSNVSAK 179
+S V A+
Sbjct: 186 VSRLVLAR 193
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQDKI 73
+++MVG GK+ + + E V PT + ++ + V + D GQ+
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
+ +YF++ G + V + E D ++L E L+ NK DL +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 139
Query: 134 SVS 136
VS
Sbjct: 140 QVS 142
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQDKI 73
+++MVG GK+ + + E V PT + ++ + V + D GQ+
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133
+ +YF++ G + V + E D ++L E L+ NK DL +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 127
Query: 134 SVS 136
VS
Sbjct: 128 QVS 130
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 15 KEMRILMVGLDAAGKT---TILYKLKLGEIVTTIPTIGFNVETVEYK---NVSFTVWDVG 68
++++I+++G A+GKT T + G+ + F + + NV+ +WD+G
Sbjct: 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIG 64
Query: 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKD--ELHRMLSEDELREAVLLVFANK 126
GQ + Y G++ V D + + +D + + +SE+ + ++ + NK
Sbjct: 65 GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNK 124
Query: 127 QDLPNAMSV 135
DL + ++
Sbjct: 125 IDLEHMRTI 133
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSR 100
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLEDGYYIQAQCAIIMFDVTSR 95
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNVSFTVWDVGGQ 70
+ +++ +G + GKT+++ + T TIG + + +E + V +WD GQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R L Y +++ + V D + + + + +E + ++++ NK DL
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLA 119
Query: 131 NAMSVS 136
+ VS
Sbjct: 120 DKRQVS 125
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNVSFTVWDVGGQ--- 70
++++VG A GKT +L E +PT+ N V+ K V +WD GQ
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 71 DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFANK 126
D++RPL + +T ++ F VDS D E I E E+ +++ ANK
Sbjct: 87 DRLRPL---SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANK 138
Query: 127 QDL 129
+DL
Sbjct: 139 KDL 141
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSR 88
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE----TVEYKNVSFTVWDVGGQD 71
+++++VG A GK++++ + G TIG + V ++V +WD GQ+
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDRE 97
+ + + Y++ + V + DRE
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKYGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIXFDVTSR 95
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD GQ
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 75 EKFGGLRDGYYIQAQCAIIMFDVTSR 100
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD G +
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 90 RYRAITSAYYRGAVGALLVYD 110
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD G +
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 69 RYRAITSAYYRGAVGALLVYD 89
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD G +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 72 RYRAITSAYYRGAVGALLVYD 92
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNVSFTVWDVGGQD 71
+++++G GK+ +L + E + + TIG T V+ K + +WD G +
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 72 KIRPLWRHYFQNTHGLIFVVD 92
+ R + Y++ G + V D
Sbjct: 66 RYRAITSAYYRGAVGALLVYD 86
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNVSFTVWDVGGQ 70
+ +++ +G + GKT+++ + T TIG + + +E + V +WD GQ
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130
++ R L Y +++ + V D + + + + +E + ++++ NK DL
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE-RGSDVIIMLVGNKTDLA 120
Query: 131 NAMSVS 136
+ ++
Sbjct: 121 DKRQIT 126
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 116
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 117 NKKDLRN 123
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 116
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 117 NKKDLRN 123
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 118
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 119 NKKDLRN 125
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 116
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 117 NKKDLRN 123
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 34.3 bits (77), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 118
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 119 NKKDLRN 125
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 67
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 68 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 119
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 120 NKKDLRN 126
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 2 GMVISRLKMLFARKEMRILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---V 55
G+V M RK ++++VG A GKT +L K + E+ +PT+ N V
Sbjct: 13 GLVPRGSHMAAIRK--KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEV 68
Query: 56 EYKNVSFTVWDVGGQ---DKIRPLWRHYFQNTHGLI--FVVDSND 95
+ K V +WD GQ D++RPL + +T ++ F +DS D
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD 110
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 66 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 117
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 118 NKKDLRN 124
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 68
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 69 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 120
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 121 NKKDLRN 127
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 63 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 114
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 115 NKKDLRN 121
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 65 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 116
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 117 NKKDLRN 123
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 67 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 118
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 119 NKKDLRN 125
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 63 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 114
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 115 NKKDLRN 121
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 2 GMVISRLKMLFARKEMRILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---V 55
G+V M RK ++++VG A GKT +L K + E+ +PT+ N V
Sbjct: 13 GLVPRGSHMAAIRK--KLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYIADIEV 68
Query: 56 EYKNVSFTVWDVGGQ---DKIRPLWRHYFQNTHGLI--FVVDSND 95
+ K V +WD GQ D++RPL + +T ++ F +DS D
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD 110
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNV 60
SR K+L ++++++G GKT+++ + + TIG + T V+ + V
Sbjct: 3 SRKKVL-----LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV 57
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD---SNDRERIGEAKDELHRMLSEDELRE 117
+ +WD GQ++ + L +++ + V D N + + +DE S +
Sbjct: 58 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 118 AVLLVFANKQDLPN 131
+V NK DL N
Sbjct: 118 FPFVVLGNKIDLEN 131
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 18/90 (20%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFN----VETVEYKNVSFTVWDVGGQ 70
++++VG A GKT +L K + E+ +PT+ N +E V+ K V +WD GQ
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVY--VPTVFENYIADIE-VDGKQVELALWDTAGQ 63
Query: 71 ---DKIRPLWRHYFQNTHGLI--FVVDSND 95
D++RPL + +T ++ F +DS D
Sbjct: 64 EDYDRLRPL---SYPDTDVILMCFSIDSPD 90
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 33.9 bits (76), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNV 60
SR K+L ++++++G GKT+++ + + TIG + T V+ + V
Sbjct: 3 SRKKVL-----LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV 57
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD---SNDRERIGEAKDELHRMLSEDELRE 117
+ +WD GQ++ + L +++ + V D N + + +DE S +
Sbjct: 58 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 118 AVLLVFANKQDLPN 131
+V NK DL N
Sbjct: 118 FPFVVLGNKIDLEN 131
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 18 RILMVGLDAAGKTTILY---KLKLGEIVTTIPTIGFNVET---VEYKNVSFTVWDVGGQ- 70
++++VG A GKT +L K + E+ +PT+ N V+ K V +WD GQ
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVY--VPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 71 --DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFA 124
D++RPL + +T ++ F +DS D E I E E+ +++
Sbjct: 66 DYDRLRPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVG 117
Query: 125 NKQDLPN 131
NK+DL N
Sbjct: 118 NKKDLRN 124
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 15/95 (15%)
Query: 19 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-----ETVEYKNVSFTVWDVGGQDKI 73
++MVGL A GKT I KL PT FN+ E V YKN F + D +I
Sbjct: 6 VIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVSYKNYEFFLPDNMEALQI 65
Query: 74 RPLW--------RHYFQNTHGLIFVVDSND--RER 98
R +Y + G + V D+ + RER
Sbjct: 66 RKQCALAALKDVHNYLSHEEGHVAVFDATNTTRER 100
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 18 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNVSFTVWDVGGQ--- 70
++++VG A GKT +L + +PT+ N V+ K V +WD GQ
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 71 DKIRPLWRHYFQNTHGLI--FVVDSNDR-ERIGEA-KDELHRMLSEDELREAVLLVFANK 126
D+ RPL + +T ++ F +DS D E I E E+ +++ NK
Sbjct: 67 DRARPL---SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNK 118
Query: 127 QDLPN 131
+DL N
Sbjct: 119 KDLRN 123
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNV 60
SR K+L ++++++G GKT+++ + + TIG + T V+ + V
Sbjct: 3 SRKKVL-----LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLV 57
Query: 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD---SNDRERIGEAKDELHRMLSEDELRE 117
+ +WD GQ++ + L +++ + V D N + + +DE S +
Sbjct: 58 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN 117
Query: 118 AVLLVFANKQDLPN 131
+V NK D N
Sbjct: 118 FPFVVLGNKIDFEN 131
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL- 120
+ ++DVGGQ R W H F+ +IF ++ ++ ++ +RM+ EL + VL
Sbjct: 185 YRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK 244
Query: 121 ---------LVFANKQDL 129
++F NK D+
Sbjct: 245 QPCFEKTSFMLFLNKFDI 262
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Query: 18 RILMVGLDAAGKTTILYKLKL--------GEIVTTIPTIGFNV 52
++L++G +GK+TI ++KL GE+ + +P I NV
Sbjct: 11 KLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANV 53
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD G
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 72 EKFGGLRDGYYIQAQCAIIMFDVTSR 97
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD G
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSR 95
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFNVETVEYKNVS-- 61
S+ + L +E+++ ++G AGKT++L +L +GE T G NV T + N+
Sbjct: 31 SKGEALVHLQEIKVHLIGDGMAGKTSLLKQL-IGETFDPKESQTHGLNVVTKQAPNIKGL 89
Query: 62 ----------FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93
F WD GGQ+ + + + + + ++DS
Sbjct: 90 ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE 117
K + F + DVGGQ R W F ++F+V S++ +++ +R++ + E
Sbjct: 197 KKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFE 256
Query: 118 AV----------LLVFANKQDL 129
+ +++F NK DL
Sbjct: 257 TIVNNKLFFNVSIILFLNKMDL 278
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----VSFTVWDVGGQ 70
+ ++++VG GKTT + + GE + T+G V + + + F VWD G
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 71 DKIRPLWRHYFQNTHGLIFVVDSNDR 96
+K L Y+ I + D R
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSR 91
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG----FNVETVEYKNVSFTVWDVGG 69
+ +++++VG GKT++L G + PT+ N++ V+ K V +WD G
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQ-VKGKPVHLHIWDTAG 91
Query: 70 Q---DKIRPLW 77
Q D++RPL+
Sbjct: 92 QDDYDRLRPLF 102
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQD 71
E ++++VG D GK+ + +L V PTI + ++ + + D GQ+
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
+ + Y + G + V N+ E I ++++ R+ +++ +++ NK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV---PMVLVGNKSD 120
Query: 129 LPN 131
LP+
Sbjct: 121 LPS 123
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNVSFTVWDVGGQ 70
+ ++ ++VG A GKT +L IPT+ N V+ K V+ +WD GQ
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 71 ---DKIRPL 76
D++RPL
Sbjct: 62 EDYDRLRPL 70
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQD 71
E ++++VG D GK+ + +L V PTI + ++ + + D GQ+
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
+ + Y + G + V N+ E I ++++ R+ +++ +++ NK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP---MVLVGNKCD 120
Query: 129 LPN 131
LP+
Sbjct: 121 LPS 123
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------VSFTVWDV 67
++++++G GK++++ + + + F+ VE+ N V+ +WD
Sbjct: 8 LKVILLGDGGVGKSSLMNRY----VTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 68 GGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFA 124
GQ++ + L +++ + +DR E +G + E + +V
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 125 NKQDLPNAMSVSE 137
NK D + +E
Sbjct: 124 NKVDKEDRQVTTE 136
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIGFNV--ETVEYKNVSFTVWDVGG-- 69
+R+++VG GK+T+L +L L E IVT IP +V E + + + F + D G
Sbjct: 244 LRMVIVGKPNVGKSTLLNRL-LNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302
Query: 70 ---QDKIRPL----WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLV 122
D + L + ++FV+D++ DE R + E ++ LV
Sbjct: 303 SETNDLVERLGIERTLQEIEKADIVLFVLDASS------PLDEEDRKILE-RIKNKRYLV 355
Query: 123 FANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165
NK D+ ++ E+ +KLG ++ A G+GL
Sbjct: 356 VINKVDVVEKINEEEIKNKLGTDR------HMVKISALKGEGL 392
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------VSFTVWDV 67
+I+++G GK++++ + + + + F+ VE+ N V+ +WD
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQL----FHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 68 GGQDKIRPLWRHYFQNTHGLIF---VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA 124
GQ++ R L +++ + + V DS + + K E E ++
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 125 NKQDL 129
NK D+
Sbjct: 128 NKTDI 132
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNVSFTVWDVGGQ 70
+ ++ ++VG A GKT +L IPT+ N V+ K V+ +WD GQ
Sbjct: 8 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 71 ---DKIRPL 76
D++RPL
Sbjct: 68 EDYDRLRPL 76
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNVSFTVWDVGGQ 70
+ ++ ++VG A GKT +L IPT+ N V+ K V+ +WD GQ
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 71 ---DKIRPL 76
D++RPL
Sbjct: 69 EDYDRLRPL 77
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------VSFTVWDV 67
+++++G GK++++ + + T + F+ VE+ N V+ +WD
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQL----FHTIGVEFLNKDLEVDGHFVTMQIWDT 65
Query: 68 GGQDKIRPLWRHYFQNTHGLIF---VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA 124
GQ++ R L +++ + + V DS + + K E E ++
Sbjct: 66 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 125
Query: 125 NKQDL 129
NK D+
Sbjct: 126 NKIDI 130
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET---VEYKNVSFTVWDVGGQ 70
+ ++ ++VG A GKT +L IPT+ N V+ K V+ +WD GQ
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 71 ---DKIRPL-WRHYFQNTHG 86
D++RPL + T+G
Sbjct: 64 EDYDRLRPLSYPQTVGETYG 83
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123
+ D GQ++ + Y + HG + V NDR+ E ++L + + +++
Sbjct: 61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLV 120
Query: 124 ANKQDL 129
NK DL
Sbjct: 121 GNKADL 126
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE---TVEYKNVSFTVWDVGGQD 71
E ++++VG D GK+ + +L V PTI + ++ + + D GQ+
Sbjct: 3 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 72 KIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128
+ + Y + G + V N+ E I + ++++ R+ D++ +++ NK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCD 119
Query: 129 L 129
L
Sbjct: 120 L 120
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA 118
N+ F +WD GQ++ + Y++ I V D ++ + AK ++++
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNY--- 148
Query: 119 VLLVFANKQD 128
++++ ANK D
Sbjct: 149 IIILVANKID 158
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 16/125 (12%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN---------VSFTVWDV 67
+++++G GK++++ + + T + F+ VE+ N V+ +WD
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQL----FHTIGVEFLNKDLEVDGHFVTMQIWDT 63
Query: 68 GGQDKIRPLWRHYFQNTHGLIF---VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA 124
GQ++ R L +++ + + V DS + + K E E ++
Sbjct: 64 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123
Query: 125 NKQDL 129
NK D+
Sbjct: 124 NKIDI 128
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 37 KLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR-----HYFQNTHGLIFVV 91
+LG++ +P I N++T+ N++ + G + F+ G +FV
Sbjct: 35 RLGKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFKKCKGPVFV- 93
Query: 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRR 151
+G ++EL R + LR+A F + V+ K +L+ R
Sbjct: 94 ------SVGCTENELQRA---EALRDAGADFF--------CVDVAHAHAKYVGKTLKSLR 136
Query: 152 WYIQAACATSGQ-GLYEGLDWLSS 174
+ + C +G Y G D+L+S
Sbjct: 137 QLLGSRCIMAGNVATYAGADYLAS 160
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY-----KNVSFTVWDVGGQ 70
++++++G GKT+++++ + TIG + T E K + VWD GQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 71 DKIRPLWRHYFQNTHGLIFVVD---SNDRERIGEAKDE--LHRMLSEDELREAVLL 121
++ + L +++ + V D ++ E I +DE +H ++ E V+L
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 19 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE------YKNVSFTVWDVGGQDK 72
I+MVGL A GKT I KL +PT FNV YK+ F + D K
Sbjct: 42 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 101
Query: 73 IR 74
IR
Sbjct: 102 IR 103
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 19 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE------YKNVSFTVWDVGGQDK 72
I+MVGL A GKT I KL +PT FNV YK+ F + D K
Sbjct: 41 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 100
Query: 73 IR 74
IR
Sbjct: 101 IR 102
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 19 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE------YKNVSFTVWDVGGQDK 72
I+MVGL A GKT I KL +PT FNV YK+ F + D K
Sbjct: 42 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 101
Query: 73 IR 74
IR
Sbjct: 102 IR 103
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVL 120
+ D GQ++ + Y + G + V DR E I + + ++ R+ DE +
Sbjct: 57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF---PM 113
Query: 121 LVFANKQDLPNAMSVSE 137
++ NK DL + V++
Sbjct: 114 ILIGNKADLDHQRQVTQ 130
>pdb|2RIQ|A Chain A, Crystal Structure Of The Third Zinc-Binding Domain Of
Human Parp-1
pdb|4DQY|B Chain B, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|E Chain E, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 160
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 103 KDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
KDEL ++ S ++L+E LL+F NKQ +P+ S
Sbjct: 35 KDELKKVCSTNDLKE--LLIF-NKQQVPSGES 63
>pdb|2JVN|A Chain A, Domain C Of Human Parp-1
Length = 126
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Query: 103 KDELHRMLSEDELREAVLLVFANKQDLPNAMS 134
KDEL ++ S ++L+E LL+F NKQ +P+ S
Sbjct: 17 KDELKKVCSTNDLKE--LLIF-NKQQVPSGES 45
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 60 VSFTVWDVGGQDKIRPLWR--HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE---DE 114
+SF VW GG +I P R H F+ H F S G R +E DE
Sbjct: 268 ISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGS------GTVFARNTRRAAEVWMDE 321
Query: 115 LREAVLLVFANKQDLP--NAMSVSEVTDKLGLHSLRQRRWYIQ 155
+ + +++P N S E+ KL S + +WY++
Sbjct: 322 YKNFYYAAVPSARNVPYGNIQSRLELRKKL---SCKPFKWYLE 361
>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1196
Score = 27.3 bits (59), Expect = 4.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 77 WRHYFQNTHGLIF-VVDSNDRER----IGEAKDELHRM-LSEDELREAVLLVFANKQDLP 130
W YFQ+T GL+F ++DSN E+ + + H + +S D L+E LL+F + +
Sbjct: 932 WEIYFQDT-GLVFNMIDSNGNEKNIYLSDVSNNSWHYITISVDRLKEQ-LLIFIDDNLVA 989
Query: 131 NAMSVSEVTD 140
N S+ E+ +
Sbjct: 990 NE-SIKEILN 998
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 44 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAK 103
TIP +VE + D G D + Y+ + I V D + E K
Sbjct: 65 TIPDTTVSVE--------LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK 116
Query: 104 D--ELHRMLSEDELREAVLLVFANKQDLP 130
EL + D R ++ ANK DLP
Sbjct: 117 AWFELLKSARPDRERPLRAVLVANKTDLP 145
>pdb|2XD2|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD2|B Chain B, The Crystal Structure Of Malx From Streptococcus
Pneumoniae
pdb|2XD3|A Chain A, The Crystal Structure Of Malx From Streptococcus
Pneumoniae In Complex With Maltopentaose
Length = 416
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 113 DELREAVLLVFANKQDLPNAMSVSEVTD 140
DEL AV+ F N Q LPN +S V D
Sbjct: 352 DELTTAVIKQFKNTQPLPNISQMSAVWD 379
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 8 LKMLFARKEMRILMVGLDAAGKTTILYKLK 37
LK L + R+L+VG+ GK+TI+ KLK
Sbjct: 91 LKKLSFDRLARVLIVGVPNTGKSTIINKLK 120
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 59 NVSFTVWDVGGQDKIRPLW-----RHYFQNTHGLIFVVD 92
N++ +WD GGQD + H FQ LI V D
Sbjct: 54 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFD 92
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE-TVEYKNVSFT--V 64
K++ A + ++ ++VG A GKT +L + + +PT+ N TV +T +
Sbjct: 3 KIISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGL 62
Query: 65 WDVGGQ---DKIRPLWRHYFQNTHGLIF--VVDSNDRERIGE 101
+D GQ D++RPL Y Q L+ VV + E + E
Sbjct: 63 FDTAGQEDYDRLRPL--SYPQTDVFLVCFSVVSPSSFENVKE 102
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 55 VEYKNVSFTVWDVGGQ-DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED 113
V+ + V+ V+D+ Q D L H Q + V DR + + L R+ +
Sbjct: 56 VDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR 115
Query: 114 ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168
+ +++ NK DL + VS + +L + AA + + L+EG
Sbjct: 116 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 170
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 55 VEYKNVSFTVWDVGGQ-DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED 113
V+ + V+ V+D+ Q D L H Q + V DR + + L R+ +
Sbjct: 46 VDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR 105
Query: 114 ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168
+ +++ NK DL + VS + +L + AA + + L+EG
Sbjct: 106 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,964,980
Number of Sequences: 62578
Number of extensions: 193186
Number of successful extensions: 942
Number of sequences better than 100.0: 282
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 299
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)