Query 030289
Match_columns 180
No_of_seqs 125 out of 1823
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 11:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 2.7E-39 5.8E-44 220.2 21.2 179 1-179 1-180 (181)
2 PTZ00133 ADP-ribosylation fact 100.0 1.2E-38 2.6E-43 217.3 21.2 179 1-179 1-180 (182)
3 smart00177 ARF ARF-like small 100.0 1.2E-37 2.7E-42 211.1 20.9 174 1-177 1-174 (175)
4 cd04149 Arf6 Arf6 subfamily. 100.0 1.1E-37 2.4E-42 210.0 18.9 164 11-174 4-167 (168)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.5E-38 5.4E-43 207.7 13.2 166 11-179 17-187 (221)
6 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.7E-38 8.1E-43 207.4 13.9 162 14-179 7-174 (205)
7 KOG0092 GTPase Rab5/YPT51 and 100.0 7.2E-38 1.6E-42 205.3 14.0 161 13-179 2-169 (200)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2E-36 4.3E-41 202.3 19.3 158 17-174 1-158 (159)
9 KOG0070 GTP-binding ADP-ribosy 100.0 4.2E-36 9.1E-41 196.4 15.9 179 1-179 1-180 (181)
10 cd04154 Arl2 Arl2 subfamily. 100.0 2.2E-35 4.8E-40 199.9 19.4 166 9-174 7-172 (173)
11 PF00025 Arf: ADP-ribosylation 100.0 4.8E-35 1E-39 198.2 20.3 168 9-176 6-175 (175)
12 cd04158 ARD1 ARD1 subfamily. 100.0 5.9E-35 1.3E-39 197.0 20.1 162 18-179 1-163 (169)
13 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.6E-35 1.2E-39 198.0 19.8 169 6-174 4-173 (174)
14 KOG0071 GTP-binding ADP-ribosy 100.0 3E-35 6.4E-40 183.4 16.7 178 1-178 1-179 (180)
15 KOG0078 GTP-binding protein SE 100.0 1.8E-35 3.9E-40 197.3 13.1 164 12-179 8-176 (207)
16 cd04151 Arl1 Arl1 subfamily. 100.0 3.2E-34 6.8E-39 191.5 18.9 157 18-174 1-157 (158)
17 cd04121 Rab40 Rab40 subfamily. 100.0 1E-34 2.2E-39 198.4 16.7 159 14-179 4-169 (189)
18 KOG0073 GTP-binding ADP-ribosy 100.0 3.9E-34 8.4E-39 182.8 18.0 175 5-179 4-180 (185)
19 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.3E-35 1.8E-39 196.7 15.3 162 15-179 1-166 (172)
20 KOG0080 GTPase Rab18, small G 100.0 1.3E-35 2.8E-40 189.1 10.2 162 14-178 9-175 (209)
21 smart00178 SAR Sar1p-like memb 100.0 1E-33 2.3E-38 193.3 20.3 172 4-175 3-183 (184)
22 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.5E-35 7.6E-40 199.7 12.8 164 13-178 2-181 (182)
23 cd01875 RhoG RhoG subfamily. 100.0 5.3E-35 1.2E-39 200.8 13.4 162 15-178 2-178 (191)
24 KOG0098 GTPase Rab2, small G p 100.0 3E-35 6.5E-40 191.8 11.2 162 14-179 4-170 (216)
25 cd04120 Rab12 Rab12 subfamily. 100.0 3.2E-34 6.9E-39 197.6 16.9 157 18-178 2-164 (202)
26 cd04157 Arl6 Arl6 subfamily. 100.0 9.4E-34 2E-38 189.8 18.8 157 18-174 1-161 (162)
27 cd04126 Rab20 Rab20 subfamily. 100.0 2.7E-34 5.8E-39 200.1 15.8 161 17-178 1-191 (220)
28 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2.3E-33 5E-38 191.5 19.7 164 15-178 2-171 (183)
29 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.7E-33 3.6E-38 189.6 18.7 157 18-174 1-166 (167)
30 cd04133 Rop_like Rop subfamily 100.0 1.6E-34 3.5E-39 195.4 13.5 160 17-178 2-174 (176)
31 cd00878 Arf_Arl Arf (ADP-ribos 100.0 2.4E-33 5.3E-38 187.2 19.0 157 18-174 1-157 (158)
32 PTZ00369 Ras-like protein; Pro 100.0 5.6E-34 1.2E-38 195.5 16.2 160 14-178 3-168 (189)
33 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.4E-33 5.2E-38 188.3 18.2 154 19-174 2-163 (164)
34 cd04131 Rnd Rnd subfamily. Th 100.0 1.4E-34 3E-39 196.4 12.1 161 16-178 1-177 (178)
35 cd00879 Sar1 Sar1 subfamily. 100.0 4.2E-33 9.2E-38 191.4 19.6 164 13-176 16-190 (190)
36 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-33 3.2E-38 189.7 16.9 157 16-178 2-165 (166)
37 cd04127 Rab27A Rab27a subfamil 100.0 1.3E-33 2.9E-38 192.3 16.2 160 15-179 3-179 (180)
38 KOG0394 Ras-related GTPase [Ge 100.0 9.9E-35 2.1E-39 189.0 10.1 163 13-178 6-179 (210)
39 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.7E-33 1E-37 186.1 18.3 157 18-174 1-159 (160)
40 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.2E-34 1.8E-38 192.3 14.2 158 17-176 2-174 (175)
41 KOG0093 GTPase Rab3, small G p 100.0 1.9E-34 4.2E-39 181.2 10.2 169 6-179 12-185 (193)
42 PLN03071 GTP-binding nuclear p 100.0 1.9E-33 4.1E-38 196.7 16.4 161 10-178 7-173 (219)
43 cd00877 Ran Ran (Ras-related n 100.0 5.5E-33 1.2E-37 186.9 18.0 156 17-179 1-161 (166)
44 cd04175 Rap1 Rap1 subgroup. T 100.0 1.8E-33 4E-38 188.9 15.6 157 16-177 1-163 (164)
45 KOG0086 GTPase Rab4, small G p 100.0 9.1E-34 2E-38 179.4 13.1 162 14-179 7-173 (214)
46 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 6.3E-34 1.4E-38 199.2 13.5 162 15-178 12-189 (232)
47 cd04136 Rap_like Rap-like subf 100.0 2.2E-33 4.7E-38 188.3 15.5 157 16-176 1-162 (163)
48 cd04119 RJL RJL (RabJ-Like) su 100.0 3.4E-33 7.3E-38 188.0 16.5 156 17-177 1-167 (168)
49 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.3E-32 2.9E-37 190.4 19.0 157 17-178 1-169 (201)
50 cd04155 Arl3 Arl3 subfamily. 100.0 2.4E-32 5.2E-37 185.0 19.6 161 14-174 12-172 (173)
51 cd01865 Rab3 Rab3 subfamily. 100.0 6.8E-33 1.5E-37 186.4 16.8 157 17-179 2-165 (165)
52 cd04128 Spg1 Spg1p. Spg1p (se 100.0 7.2E-33 1.6E-37 188.7 16.6 159 17-178 1-167 (182)
53 cd04111 Rab39 Rab39 subfamily. 100.0 9.9E-33 2.2E-37 192.0 17.1 159 16-179 2-168 (211)
54 cd01867 Rab8_Rab10_Rab13_like 100.0 1.2E-32 2.5E-37 185.6 16.9 159 15-179 2-167 (167)
55 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.2E-32 4.7E-37 184.2 18.2 157 18-174 1-166 (167)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.2E-33 1.3E-37 187.2 15.5 158 18-179 2-167 (170)
57 smart00173 RAS Ras subfamily o 100.0 1E-32 2.2E-37 185.2 16.2 157 17-178 1-163 (164)
58 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.9E-32 4E-37 183.4 17.2 156 16-176 1-161 (162)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 7.9E-33 1.7E-37 185.6 15.3 157 16-176 1-162 (163)
60 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.7E-33 3.7E-38 187.2 11.8 161 14-178 12-177 (222)
61 cd04117 Rab15 Rab15 subfamily. 100.0 1.6E-32 3.6E-37 183.7 16.5 154 17-175 1-160 (161)
62 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.8E-32 4E-37 184.4 16.8 157 16-178 2-165 (166)
63 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1E-32 2.2E-37 185.1 15.5 156 16-176 2-163 (164)
64 cd04109 Rab28 Rab28 subfamily. 100.0 2E-32 4.4E-37 191.3 17.3 158 17-178 1-167 (215)
65 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.8E-33 1E-37 193.9 13.4 161 16-178 1-177 (222)
66 cd04144 Ras2 Ras2 subfamily. 100.0 1.4E-32 3.1E-37 188.7 15.4 159 18-179 1-165 (190)
67 cd04134 Rho3 Rho3 subfamily. 100.0 4.9E-33 1.1E-37 190.8 12.7 160 17-178 1-175 (189)
68 cd04110 Rab35 Rab35 subfamily. 100.0 4E-32 8.7E-37 187.7 17.2 157 15-178 5-168 (199)
69 cd04159 Arl10_like Arl10-like 100.0 2E-31 4.4E-36 177.6 19.2 156 19-174 2-158 (159)
70 cd01871 Rac1_like Rac1-like su 100.0 8.4E-33 1.8E-37 187.2 12.6 158 16-175 1-173 (174)
71 cd04140 ARHI_like ARHI subfami 100.0 8.3E-32 1.8E-36 181.1 16.2 156 17-175 2-163 (165)
72 cd04125 RabA_like RabA-like su 100.0 1E-31 2.2E-36 184.2 16.9 158 17-179 1-164 (188)
73 cd01866 Rab2 Rab2 subfamily. 100.0 1.1E-31 2.4E-36 180.9 16.8 158 16-179 4-168 (168)
74 cd04124 RabL2 RabL2 subfamily. 100.0 1.6E-31 3.5E-36 178.9 17.1 155 17-179 1-160 (161)
75 cd01868 Rab11_like Rab11-like. 100.0 1.6E-31 3.4E-36 179.7 16.6 155 16-176 3-164 (165)
76 cd04115 Rab33B_Rab33A Rab33B/R 100.0 9E-32 1.9E-36 181.7 15.5 158 16-177 2-169 (170)
77 cd04116 Rab9 Rab9 subfamily. 100.0 2.2E-31 4.8E-36 179.8 17.4 158 14-176 3-170 (170)
78 PLN03110 Rab GTPase; Provision 100.0 1.5E-31 3.2E-36 186.8 16.8 160 14-178 10-175 (216)
79 cd04103 Centaurin_gamma Centau 100.0 5.4E-32 1.2E-36 180.5 13.9 152 17-176 1-158 (158)
80 cd04106 Rab23_lke Rab23-like s 100.0 1E-31 2.2E-36 180.0 15.2 152 17-175 1-161 (162)
81 PLN03118 Rab family protein; P 100.0 2.3E-31 4.9E-36 185.5 17.3 161 13-178 11-178 (211)
82 cd04112 Rab26 Rab26 subfamily. 100.0 1.8E-31 3.9E-36 183.4 16.4 157 17-179 1-165 (191)
83 PF00071 Ras: Ras family; Int 100.0 2.9E-32 6.4E-37 182.7 12.2 154 18-177 1-161 (162)
84 smart00176 RAN Ran (Ras-relate 100.0 1.8E-31 4E-36 183.6 15.8 149 22-178 1-155 (200)
85 cd04113 Rab4 Rab4 subfamily. 100.0 2.4E-31 5.1E-36 178.1 15.9 154 17-176 1-161 (161)
86 KOG0075 GTP-binding ADP-ribosy 100.0 1.5E-31 3.3E-36 168.1 13.5 171 8-178 12-183 (186)
87 smart00175 RAB Rab subfamily o 100.0 3.7E-31 7.9E-36 177.6 16.5 157 17-179 1-164 (164)
88 cd04118 Rab24 Rab24 subfamily. 100.0 2E-31 4.2E-36 183.5 15.4 160 17-178 1-167 (193)
89 cd01860 Rab5_related Rab5-rela 100.0 4.3E-31 9.3E-36 177.1 16.6 155 16-176 1-162 (163)
90 cd01864 Rab19 Rab19 subfamily. 100.0 3.1E-31 6.8E-36 178.2 15.9 156 15-176 2-165 (165)
91 cd04177 RSR1 RSR1 subgroup. R 100.0 2.9E-31 6.3E-36 178.9 15.6 157 16-177 1-164 (168)
92 KOG0079 GTP-binding protein H- 100.0 3.9E-32 8.4E-37 171.0 9.6 158 16-178 8-170 (198)
93 KOG0091 GTPase Rab39, small G 100.0 1.8E-32 3.8E-37 175.3 8.1 162 14-178 6-174 (213)
94 cd04101 RabL4 RabL4 (Rab-like4 100.0 6.3E-31 1.4E-35 176.5 16.1 154 17-176 1-163 (164)
95 cd04132 Rho4_like Rho4-like su 100.0 2.8E-31 6E-36 181.9 14.5 160 17-178 1-168 (187)
96 cd01861 Rab6 Rab6 subfamily. 100.0 7.9E-31 1.7E-35 175.5 16.3 154 17-176 1-161 (161)
97 cd04143 Rhes_like Rhes_like su 100.0 2.2E-30 4.8E-35 183.6 19.3 156 17-176 1-170 (247)
98 cd01892 Miro2 Miro2 subfamily. 100.0 1.4E-30 3.1E-35 175.6 17.5 156 14-179 2-168 (169)
99 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-30 2.4E-35 175.2 16.5 157 17-178 1-163 (164)
100 cd04142 RRP22 RRP22 subfamily. 100.0 6.8E-31 1.5E-35 181.0 15.7 160 17-179 1-176 (198)
101 smart00174 RHO Rho (Ras homolo 100.0 2.2E-31 4.7E-36 180.4 13.0 158 19-178 1-173 (174)
102 PLN03108 Rab family protein; P 100.0 1.5E-30 3.2E-35 181.2 16.8 159 14-178 4-169 (210)
103 cd01863 Rab18 Rab18 subfamily. 100.0 4.3E-30 9.3E-35 172.0 18.1 155 17-176 1-161 (161)
104 cd01862 Rab7 Rab7 subfamily. 100.0 5.1E-30 1.1E-34 173.3 18.3 158 17-179 1-169 (172)
105 cd01873 RhoBTB RhoBTB subfamil 100.0 2.9E-31 6.3E-36 182.3 12.2 156 16-175 2-194 (195)
106 KOG0095 GTPase Rab30, small G 100.0 1.8E-31 3.9E-36 168.4 9.1 158 16-177 7-169 (213)
107 cd04123 Rab21 Rab21 subfamily. 100.0 4.5E-30 9.8E-35 171.8 16.3 154 17-176 1-161 (162)
108 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-30 3.4E-35 174.8 14.1 155 18-177 1-164 (165)
109 cd04148 RGK RGK subfamily. Th 100.0 4.7E-30 1E-34 179.8 16.7 155 17-178 1-164 (221)
110 cd04135 Tc10 TC10 subfamily. 100.0 1.6E-30 3.5E-35 176.1 13.4 158 17-176 1-173 (174)
111 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.9E-30 4.2E-35 175.7 13.1 156 17-174 1-171 (173)
112 cd01893 Miro1 Miro1 subfamily. 100.0 5.2E-30 1.1E-34 172.5 14.7 158 17-178 1-165 (166)
113 cd04147 Ras_dva Ras-dva subfam 100.0 2.8E-29 6.2E-34 173.4 16.4 156 18-177 1-163 (198)
114 KOG0081 GTPase Rab27, small G 100.0 1.5E-31 3.2E-36 170.4 3.9 160 17-179 10-183 (219)
115 KOG0072 GTP-binding ADP-ribosy 100.0 5.6E-30 1.2E-34 160.5 10.8 173 8-180 9-182 (182)
116 cd01870 RhoA_like RhoA-like su 100.0 4.2E-29 9.1E-34 169.4 15.9 159 16-176 1-174 (175)
117 cd00154 Rab Rab family. Rab G 100.0 7.4E-29 1.6E-33 165.1 16.6 152 17-174 1-159 (159)
118 cd04137 RheB Rheb (Ras Homolog 100.0 5E-29 1.1E-33 169.8 15.6 157 17-178 2-164 (180)
119 cd04114 Rab30 Rab30 subfamily. 100.0 7.6E-29 1.6E-33 167.2 16.0 157 15-176 6-168 (169)
120 cd00157 Rho Rho (Ras homology) 100.0 2.1E-29 4.5E-34 170.2 12.9 156 17-174 1-170 (171)
121 cd00876 Ras Ras family. The R 100.0 3.1E-29 6.8E-34 167.4 13.4 154 18-176 1-160 (160)
122 PTZ00132 GTP-binding nuclear p 100.0 3E-28 6.5E-33 170.3 18.7 161 12-179 5-170 (215)
123 KOG0088 GTPase Rab21, small G 100.0 6.4E-30 1.4E-34 162.9 5.3 164 12-179 9-177 (218)
124 cd04129 Rho2 Rho2 subfamily. 100.0 2.9E-28 6.3E-33 166.9 13.4 160 16-177 1-173 (187)
125 cd04102 RabL3 RabL3 (Rab-like3 100.0 1E-27 2.2E-32 165.0 15.1 147 17-163 1-176 (202)
126 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.1E-30 4.6E-35 160.7 1.3 156 20-179 1-162 (192)
127 KOG0395 Ras-related GTPase [Ge 100.0 6.4E-28 1.4E-32 164.9 12.5 161 15-178 2-166 (196)
128 cd01897 NOG NOG1 is a nucleola 100.0 8.6E-27 1.9E-31 157.0 17.0 152 18-176 2-167 (168)
129 cd01898 Obg Obg subfamily. Th 100.0 4E-27 8.7E-32 158.9 15.1 156 18-176 2-170 (170)
130 KOG0097 GTPase Rab14, small G 100.0 1.7E-27 3.7E-32 149.3 11.8 160 15-178 10-174 (215)
131 KOG0076 GTP-binding ADP-ribosy 100.0 4E-28 8.8E-33 156.8 8.8 179 1-179 1-189 (197)
132 cd04171 SelB SelB subfamily. 99.9 1.8E-26 3.9E-31 154.7 13.7 149 17-174 1-163 (164)
133 cd01890 LepA LepA subfamily. 99.9 3.3E-26 7.1E-31 155.7 14.8 150 18-177 2-177 (179)
134 KOG0074 GTP-binding ADP-ribosy 99.9 1.4E-26 3.1E-31 144.9 11.8 164 13-176 14-178 (185)
135 cd01878 HflX HflX subfamily. 99.9 4.6E-26 1E-30 158.1 14.3 154 14-176 39-204 (204)
136 KOG0393 Ras-related small GTPa 99.9 2.3E-27 5E-32 159.2 6.2 163 14-178 2-180 (198)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 2E-25 4.4E-30 164.0 16.4 159 16-178 158-329 (335)
138 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.6E-25 5.6E-30 149.7 14.9 154 18-177 2-166 (168)
139 TIGR00231 small_GTP small GTP- 99.9 4.6E-25 1E-29 146.6 15.2 153 16-173 1-160 (161)
140 PLN00023 GTP-binding protein; 99.9 2.2E-25 4.8E-30 160.7 14.4 123 10-132 15-166 (334)
141 PRK04213 GTP-binding protein; 99.9 5E-26 1.1E-30 157.6 10.1 160 13-178 6-193 (201)
142 TIGR02528 EutP ethanolamine ut 99.9 1.3E-25 2.8E-30 147.3 10.5 134 17-173 1-141 (142)
143 PRK03003 GTP-binding protein D 99.9 8.8E-25 1.9E-29 168.3 16.7 159 15-178 210-383 (472)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.8E-24 6E-29 143.0 16.9 143 17-176 2-156 (157)
145 cd00881 GTP_translation_factor 99.9 2.6E-24 5.7E-29 147.3 17.2 155 18-177 1-187 (189)
146 PRK15494 era GTPase Era; Provi 99.9 1.6E-24 3.4E-29 160.2 16.9 156 14-178 50-217 (339)
147 TIGR02729 Obg_CgtA Obg family 99.9 1.3E-24 2.8E-29 159.6 16.2 157 16-176 157-328 (329)
148 cd01881 Obg_like The Obg-like 99.9 4.6E-25 1E-29 149.5 12.5 152 21-175 1-175 (176)
149 TIGR00436 era GTP-binding prot 99.9 2.4E-24 5.3E-29 155.2 16.9 152 18-178 2-165 (270)
150 TIGR03156 GTP_HflX GTP-binding 99.9 2E-24 4.4E-29 159.9 16.1 150 15-175 188-350 (351)
151 cd01879 FeoB Ferrous iron tran 99.9 2.1E-24 4.7E-29 143.8 14.2 146 21-177 1-157 (158)
152 PRK05291 trmE tRNA modificatio 99.9 2.7E-24 5.8E-29 164.2 16.5 146 14-177 213-370 (449)
153 cd00882 Ras_like_GTPase Ras-li 99.9 9.7E-25 2.1E-29 143.9 12.4 151 21-174 1-157 (157)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.5E-24 1.4E-28 161.4 18.3 152 11-178 198-361 (442)
155 COG1100 GTPase SAR1 and relate 99.9 1.6E-24 3.5E-29 151.9 13.9 164 14-178 3-186 (219)
156 cd04105 SR_beta Signal recogni 99.9 3.4E-24 7.4E-29 148.3 15.2 157 18-174 2-202 (203)
157 cd01889 SelB_euk SelB subfamil 99.9 1.2E-24 2.6E-29 149.6 12.3 157 17-178 1-187 (192)
158 cd01891 TypA_BipA TypA (tyrosi 99.9 3.8E-24 8.3E-29 147.3 14.6 146 17-167 3-172 (194)
159 TIGR03594 GTPase_EngA ribosome 99.9 6.2E-24 1.3E-28 162.5 16.8 159 14-177 170-344 (429)
160 PF02421 FeoB_N: Ferrous iron 99.9 2E-24 4.4E-29 141.5 12.1 141 17-172 1-156 (156)
161 cd01895 EngA2 EngA2 subfamily. 99.9 2.3E-23 5.1E-28 140.6 17.3 155 16-175 2-173 (174)
162 cd01894 EngA1 EngA1 subfamily. 99.9 9.6E-24 2.1E-28 140.4 15.1 144 20-176 1-157 (157)
163 KOG4252 GTP-binding protein [S 99.9 1.2E-26 2.6E-31 150.9 0.5 161 14-179 18-183 (246)
164 PTZ00099 rab6; Provisional 99.9 5.1E-24 1.1E-28 144.2 13.3 131 42-178 7-143 (176)
165 PRK03003 GTP-binding protein D 99.9 1.6E-23 3.5E-28 161.3 17.7 152 15-178 37-200 (472)
166 PRK12296 obgE GTPase CgtA; Rev 99.9 1.9E-23 4.1E-28 159.2 15.5 159 16-178 159-341 (500)
167 PRK15467 ethanolamine utilizat 99.9 5.9E-24 1.3E-28 141.7 11.3 142 18-178 3-148 (158)
168 PRK12297 obgE GTPase CgtA; Rev 99.9 8.4E-23 1.8E-27 153.8 17.8 153 18-178 160-328 (424)
169 PRK00454 engB GTP-binding prot 99.9 1.8E-23 3.9E-28 144.2 13.0 165 8-178 16-195 (196)
170 cd04163 Era Era subfamily. Er 99.9 8.5E-23 1.8E-27 136.9 15.5 154 15-176 2-168 (168)
171 cd01888 eIF2_gamma eIF2-gamma 99.9 1.3E-23 2.9E-28 145.5 11.6 159 17-178 1-200 (203)
172 PRK00093 GTP-binding protein D 99.9 1.5E-22 3.3E-27 155.1 17.0 159 14-177 171-344 (435)
173 COG2229 Predicted GTPase [Gene 99.9 1.6E-22 3.4E-27 132.7 14.5 159 10-175 4-176 (187)
174 PF00009 GTP_EFTU: Elongation 99.9 1.5E-23 3.3E-28 143.6 10.2 157 15-177 2-187 (188)
175 PF08477 Miro: Miro-like prote 99.9 1.2E-23 2.6E-28 134.0 9.0 109 18-128 1-119 (119)
176 PRK11058 GTPase HflX; Provisio 99.9 3.6E-22 7.9E-27 151.1 18.2 153 17-178 198-363 (426)
177 PRK12298 obgE GTPase CgtA; Rev 99.9 2E-22 4.3E-27 151.0 16.0 159 18-178 161-334 (390)
178 TIGR03598 GTPase_YsxC ribosome 99.9 3.5E-23 7.7E-28 140.8 10.9 151 7-166 9-179 (179)
179 PRK09518 bifunctional cytidyla 99.9 1.7E-22 3.8E-27 162.2 16.3 160 14-178 448-622 (712)
180 TIGR00487 IF-2 translation ini 99.9 3.3E-22 7.2E-27 156.3 17.4 157 12-174 83-247 (587)
181 PRK00093 GTP-binding protein D 99.9 2.1E-22 4.6E-27 154.3 16.1 146 17-175 2-160 (435)
182 TIGR01393 lepA GTP-binding pro 99.9 2.7E-22 5.9E-27 157.4 16.8 153 16-178 3-181 (595)
183 TIGR03594 GTPase_EngA ribosome 99.9 2.1E-22 4.5E-27 154.1 15.4 148 18-178 1-161 (429)
184 PRK00089 era GTPase Era; Revie 99.9 4.2E-22 9.1E-27 145.3 16.1 156 15-178 4-172 (292)
185 cd00880 Era_like Era (E. coli 99.9 2.3E-22 4.9E-27 133.7 13.5 151 21-176 1-163 (163)
186 COG1159 Era GTPase [General fu 99.9 2.2E-22 4.8E-27 141.8 13.1 157 14-178 4-173 (298)
187 PRK05306 infB translation init 99.9 1.3E-21 2.9E-26 156.4 17.7 158 12-175 286-450 (787)
188 CHL00189 infB translation init 99.9 1.3E-21 2.7E-26 155.3 16.4 159 12-176 240-409 (742)
189 TIGR00475 selB selenocysteine- 99.9 3.8E-22 8.1E-27 156.5 13.2 156 17-177 1-166 (581)
190 PRK12317 elongation factor 1-a 99.9 5.8E-22 1.2E-26 151.2 13.9 154 13-168 3-196 (425)
191 PRK09518 bifunctional cytidyla 99.9 1.7E-21 3.7E-26 156.5 16.7 153 14-178 273-437 (712)
192 COG1160 Predicted GTPases [Gen 99.9 5.7E-22 1.2E-26 146.9 12.8 148 17-176 4-164 (444)
193 KOG3883 Ras family small GTPas 99.9 4.5E-21 9.8E-26 121.9 14.9 161 15-178 8-176 (198)
194 COG1160 Predicted GTPases [Gen 99.9 2.4E-21 5.1E-26 143.6 15.2 158 15-177 177-351 (444)
195 TIGR00483 EF-1_alpha translati 99.9 6.3E-22 1.4E-26 151.0 12.5 153 13-167 4-197 (426)
196 cd01896 DRG The developmentall 99.9 9.7E-21 2.1E-25 133.5 16.9 149 18-176 2-225 (233)
197 PRK05433 GTP-binding protein L 99.9 7.5E-21 1.6E-25 149.5 17.5 155 14-178 5-185 (600)
198 COG0486 ThdF Predicted GTPase 99.9 9.7E-21 2.1E-25 140.7 16.8 155 10-178 211-377 (454)
199 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.2E-21 2.6E-26 128.7 9.4 157 14-177 8-169 (216)
200 PRK09554 feoB ferrous iron tra 99.9 8.2E-21 1.8E-25 152.5 16.0 151 15-176 2-167 (772)
201 cd04168 TetM_like Tet(M)-like 99.9 1.8E-20 4E-25 132.3 15.7 155 18-177 1-235 (237)
202 cd04166 CysN_ATPS CysN_ATPS su 99.9 9.7E-21 2.1E-25 131.7 13.5 146 18-167 1-184 (208)
203 TIGR00437 feoB ferrous iron tr 99.9 5.3E-21 1.2E-25 150.2 13.4 143 23-176 1-154 (591)
204 TIGR03680 eif2g_arch translati 99.9 4.8E-21 1E-25 145.1 12.4 159 14-177 2-196 (406)
205 COG0218 Predicted GTPase [Gene 99.9 1.3E-20 2.7E-25 126.3 12.8 163 7-179 15-199 (200)
206 cd01884 EF_Tu EF-Tu subfamily. 99.9 9.1E-21 2E-25 130.1 12.4 146 16-166 2-172 (195)
207 TIGR01394 TypA_BipA GTP-bindin 99.9 1.1E-20 2.3E-25 148.2 14.3 156 18-178 3-192 (594)
208 TIGR00491 aIF-2 translation in 99.9 3.2E-20 6.9E-25 145.1 16.4 153 15-175 3-214 (590)
209 PRK10218 GTP-binding protein; 99.9 5.4E-20 1.2E-24 144.2 16.3 159 14-177 3-195 (607)
210 cd01883 EF1_alpha Eukaryotic e 99.8 8.5E-21 1.8E-25 132.9 10.3 147 18-167 1-195 (219)
211 PRK04000 translation initiatio 99.8 1.7E-20 3.7E-25 142.1 12.7 160 13-177 6-201 (411)
212 PF10662 PduV-EutP: Ethanolami 99.8 3.5E-20 7.6E-25 119.0 11.1 135 18-173 3-142 (143)
213 KOG0077 Vesicle coat complex C 99.8 1.4E-20 3E-25 121.2 9.1 162 14-175 18-191 (193)
214 cd01876 YihA_EngB The YihA (En 99.8 5.8E-20 1.3E-24 123.4 12.6 151 18-176 1-170 (170)
215 PRK04004 translation initiatio 99.8 1.8E-19 3.8E-24 141.4 16.4 155 13-175 3-216 (586)
216 cd04165 GTPBP1_like GTPBP1-lik 99.8 8.7E-20 1.9E-24 127.7 12.7 152 18-174 1-220 (224)
217 PRK10512 selenocysteinyl-tRNA- 99.8 7.9E-20 1.7E-24 144.0 13.1 155 18-177 2-166 (614)
218 KOG1673 Ras GTPases [General f 99.8 1.7E-20 3.7E-25 119.5 7.4 162 14-177 18-186 (205)
219 cd04169 RF3 RF3 subfamily. Pe 99.8 8.6E-19 1.9E-23 125.7 15.8 110 17-131 3-137 (267)
220 PRK12736 elongation factor Tu; 99.8 1.7E-19 3.7E-24 136.2 12.5 160 13-177 9-201 (394)
221 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 1.9E-19 4.2E-24 125.5 11.5 157 18-178 1-177 (232)
222 PF09439 SRPRB: Signal recogni 99.8 9.8E-20 2.1E-24 121.9 9.1 123 15-138 2-133 (181)
223 cd04170 EF-G_bact Elongation f 99.8 1E-18 2.2E-23 126.0 15.1 109 18-131 1-130 (268)
224 KOG0090 Signal recognition par 99.8 6.3E-19 1.4E-23 118.3 12.3 162 14-176 36-238 (238)
225 PRK12735 elongation factor Tu; 99.8 3.9E-19 8.5E-24 134.3 12.5 158 14-176 10-202 (396)
226 cd01886 EF-G Elongation factor 99.8 2.3E-18 5E-23 123.6 15.5 109 18-131 1-130 (270)
227 cd04104 p47_IIGP_like p47 (47- 99.8 4.3E-19 9.3E-24 122.4 10.5 157 16-179 1-186 (197)
228 CHL00071 tufA elongation facto 99.8 9.8E-19 2.1E-23 132.7 12.2 148 13-165 9-181 (409)
229 COG0370 FeoB Fe2+ transport sy 99.8 4.1E-18 8.8E-23 131.9 15.6 149 15-178 2-165 (653)
230 TIGR00485 EF-Tu translation el 99.8 6E-19 1.3E-23 133.4 10.6 146 13-163 9-179 (394)
231 PRK13351 elongation factor G; 99.8 3.7E-18 8.1E-23 137.2 15.6 114 13-131 5-139 (687)
232 PRK00741 prfC peptide chain re 99.8 5.2E-18 1.1E-22 131.6 15.4 113 14-131 8-145 (526)
233 cd04167 Snu114p Snu114p subfam 99.8 1.9E-18 4E-23 120.7 11.5 108 18-130 2-136 (213)
234 PLN00043 elongation factor 1-a 99.8 1.3E-18 2.8E-23 132.8 11.4 150 13-167 4-203 (447)
235 PLN03126 Elongation factor Tu; 99.8 1.7E-18 3.8E-23 132.8 11.9 148 12-164 77-249 (478)
236 KOG1489 Predicted GTP-binding 99.8 4.4E-18 9.4E-23 120.7 12.7 152 16-174 196-364 (366)
237 KOG1423 Ras-like GTPase ERA [C 99.8 1.8E-18 3.8E-23 122.2 10.4 160 13-178 69-272 (379)
238 PRK05124 cysN sulfate adenylyl 99.8 1.4E-18 3.1E-23 133.6 10.6 152 13-168 24-216 (474)
239 PTZ00141 elongation factor 1- 99.8 3.2E-18 7E-23 130.7 12.3 151 13-167 4-203 (446)
240 PRK00049 elongation factor Tu; 99.8 4.7E-18 1E-22 128.4 12.7 158 14-176 10-202 (396)
241 KOG1707 Predicted Ras related/ 99.8 5.5E-19 1.2E-23 133.8 7.4 159 13-177 6-175 (625)
242 PLN03127 Elongation factor Tu; 99.8 1.3E-17 2.9E-22 127.2 14.8 161 11-176 56-251 (447)
243 COG1084 Predicted GTPase [Gene 99.8 1.5E-17 3.4E-22 118.6 13.7 155 15-176 167-335 (346)
244 TIGR02034 CysN sulfate adenyly 99.8 7.1E-18 1.5E-22 127.8 12.6 147 17-167 1-187 (406)
245 KOG4423 GTP-binding protein-li 99.8 1E-20 2.2E-25 124.0 -2.7 158 14-178 23-195 (229)
246 TIGR00503 prfC peptide chain r 99.8 6.7E-17 1.5E-21 125.5 16.8 113 14-131 9-146 (527)
247 TIGR00484 EF-G translation elo 99.8 7.9E-17 1.7E-21 129.5 17.7 114 13-131 7-141 (689)
248 PF01926 MMR_HSR1: 50S ribosom 99.8 1E-16 2.2E-21 101.5 14.3 103 18-126 1-116 (116)
249 COG5256 TEF1 Translation elong 99.7 6.7E-18 1.5E-22 123.8 9.2 153 13-167 4-201 (428)
250 PRK05506 bifunctional sulfate 99.7 1.6E-17 3.4E-22 132.4 11.9 154 10-167 18-211 (632)
251 cd01885 EF2 EF2 (for archaea a 99.7 4.2E-17 9.1E-22 113.8 12.0 108 18-130 2-138 (222)
252 cd00066 G-alpha G protein alph 99.7 9.9E-17 2.1E-21 117.9 13.3 135 45-179 146-313 (317)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.8E-16 3.9E-21 109.3 13.4 160 17-178 1-185 (196)
254 PTZ00327 eukaryotic translatio 99.7 5.5E-17 1.2E-21 123.8 11.8 163 12-177 30-233 (460)
255 smart00275 G_alpha G protein a 99.7 1.3E-16 2.9E-21 118.0 13.4 134 45-178 169-335 (342)
256 cd01899 Ygr210 Ygr210 subfamil 99.7 4.3E-16 9.3E-21 114.0 15.6 76 19-94 1-110 (318)
257 COG3596 Predicted GTPase [Gene 99.7 7.8E-17 1.7E-21 112.6 10.4 163 10-177 33-222 (296)
258 KOG0462 Elongation factor-type 99.7 2.5E-16 5.5E-21 118.9 13.7 158 14-178 58-236 (650)
259 COG0532 InfB Translation initi 99.7 2.8E-16 6.1E-21 118.7 12.9 157 14-176 3-169 (509)
260 KOG1191 Mitochondrial GTPase [ 99.7 5.7E-16 1.2E-20 115.7 14.1 164 14-178 266-451 (531)
261 PRK12739 elongation factor G; 99.7 7.3E-16 1.6E-20 123.9 15.2 114 13-131 5-139 (691)
262 cd01850 CDC_Septin CDC/Septin. 99.7 1E-16 2.3E-21 115.5 9.3 113 15-133 3-159 (276)
263 COG1163 DRG Predicted GTPase [ 99.7 2E-15 4.4E-20 107.7 14.0 152 16-177 63-289 (365)
264 PRK12740 elongation factor G; 99.7 1.9E-15 4.2E-20 121.4 15.7 105 22-131 1-126 (668)
265 PRK00007 elongation factor G; 99.7 1.9E-15 4.2E-20 121.4 15.6 114 13-131 7-141 (693)
266 COG0536 Obg Predicted GTPase [ 99.7 1.5E-15 3.3E-20 109.1 13.2 158 18-178 161-334 (369)
267 COG2262 HflX GTPases [General 99.7 7.7E-15 1.7E-19 107.9 15.8 155 14-178 190-357 (411)
268 COG0481 LepA Membrane GTPase L 99.7 2E-15 4.3E-20 112.5 11.6 155 14-178 7-187 (603)
269 KOG1145 Mitochondrial translat 99.6 7.4E-15 1.6E-19 111.1 13.9 161 10-176 147-315 (683)
270 KOG0082 G-protein alpha subuni 99.6 3.2E-15 6.9E-20 109.1 10.8 134 45-178 180-345 (354)
271 PRK13768 GTPase; Provisional 99.6 2.9E-15 6.3E-20 106.9 10.2 118 60-178 97-248 (253)
272 PRK09602 translation-associate 99.6 1.4E-14 3.1E-19 109.0 14.2 78 17-94 2-113 (396)
273 PRK09866 hypothetical protein; 99.6 2E-14 4.3E-19 111.7 14.9 112 60-174 230-350 (741)
274 COG4917 EutP Ethanolamine util 99.6 1.4E-15 3.1E-20 93.8 6.4 138 18-175 3-144 (148)
275 TIGR00490 aEF-2 translation el 99.6 1.7E-14 3.7E-19 116.4 12.9 113 14-131 17-152 (720)
276 PF03029 ATP_bind_1: Conserved 99.6 6.1E-15 1.3E-19 104.1 7.3 115 61-176 92-236 (238)
277 TIGR00991 3a0901s02IAP34 GTP-b 99.6 2.4E-13 5.3E-18 98.1 14.8 117 13-131 35-167 (313)
278 cd01882 BMS1 Bms1. Bms1 is an 99.6 5.3E-14 1.1E-18 98.9 11.1 142 14-164 37-183 (225)
279 TIGR00101 ureG urease accessor 99.6 1.3E-13 2.8E-18 95.0 12.6 104 60-178 92-197 (199)
280 PF04548 AIG1: AIG1 family; I 99.6 3.7E-14 8.1E-19 98.8 9.6 161 17-179 1-188 (212)
281 PRK14845 translation initiatio 99.5 1.5E-13 3.3E-18 113.1 13.6 141 27-175 472-671 (1049)
282 cd01853 Toc34_like Toc34-like 99.5 3.4E-13 7.5E-18 95.8 13.3 119 12-132 27-164 (249)
283 PRK09435 membrane ATPase/prote 99.5 4.8E-14 1E-18 103.5 9.1 107 59-177 148-260 (332)
284 COG1217 TypA Predicted membran 99.5 1.9E-13 4.1E-18 101.9 11.8 159 15-178 4-196 (603)
285 KOG1490 GTP-binding protein CR 99.5 2.1E-14 4.5E-19 107.7 6.5 163 14-178 166-342 (620)
286 KOG3905 Dynein light intermedi 99.5 2.6E-13 5.6E-18 97.2 11.2 162 15-177 51-290 (473)
287 COG2895 CysN GTPases - Sulfate 99.5 9.1E-14 2E-18 100.3 8.9 149 14-166 4-192 (431)
288 COG3276 SelB Selenocysteine-sp 99.5 1.7E-13 3.7E-18 101.6 10.5 154 18-176 2-161 (447)
289 KOG0458 Elongation factor 1 al 99.5 7.4E-14 1.6E-18 106.4 8.4 158 9-168 170-373 (603)
290 KOG1532 GTPase XAB1, interacts 99.5 1.7E-13 3.7E-18 96.0 8.3 166 10-178 13-265 (366)
291 PLN00116 translation elongatio 99.5 3.9E-13 8.5E-18 110.2 11.8 120 5-130 9-163 (843)
292 PF03308 ArgK: ArgK protein; 99.5 1.1E-13 2.5E-18 96.7 6.6 149 15-175 28-228 (266)
293 PTZ00416 elongation factor 2; 99.5 4.6E-13 1E-17 109.6 11.2 119 6-130 10-157 (836)
294 PF05783 DLIC: Dynein light in 99.5 1.5E-12 3.3E-17 99.5 12.3 161 15-178 24-265 (472)
295 PF00503 G-alpha: G-protein al 99.4 4.2E-13 9E-18 101.7 8.6 130 47-176 222-389 (389)
296 smart00010 small_GTPase Small 99.4 2.8E-13 6E-18 86.5 6.4 113 17-166 1-115 (124)
297 KOG3886 GTP-binding protein [S 99.4 3.3E-13 7.2E-18 92.2 6.2 157 16-175 4-176 (295)
298 COG4108 PrfC Peptide chain rel 99.4 4.8E-12 1.1E-16 93.9 12.7 113 14-131 10-147 (528)
299 PF05049 IIGP: Interferon-indu 99.4 3.7E-13 7.9E-18 99.7 6.9 160 12-178 31-219 (376)
300 TIGR00750 lao LAO/AO transport 99.4 9.8E-12 2.1E-16 91.0 13.5 106 59-176 126-237 (300)
301 PRK07560 elongation factor EF- 99.4 1.4E-12 3E-17 105.7 9.8 112 14-130 18-152 (731)
302 COG1703 ArgK Putative periplas 99.4 3.5E-12 7.6E-17 90.6 10.5 107 59-177 143-254 (323)
303 KOG3887 Predicted small GTPase 99.4 7.3E-12 1.6E-16 86.4 11.3 162 16-179 27-204 (347)
304 PF00735 Septin: Septin; Inte 99.4 2.3E-12 4.9E-17 93.1 9.0 117 16-138 4-163 (281)
305 PF00350 Dynamin_N: Dynamin fa 99.4 1E-11 2.2E-16 83.6 11.0 63 61-127 102-168 (168)
306 TIGR00073 hypB hydrogenase acc 99.4 3.3E-12 7E-17 88.8 8.7 147 14-175 20-205 (207)
307 TIGR00157 ribosome small subun 99.4 3.1E-12 6.7E-17 90.9 8.4 96 70-174 23-120 (245)
308 COG5257 GCD11 Translation init 99.4 2.4E-12 5.3E-17 92.1 7.6 160 14-178 8-203 (415)
309 KOG0461 Selenocysteine-specifi 99.4 2.1E-11 4.6E-16 88.2 11.9 158 14-177 5-193 (522)
310 COG0378 HypB Ni2+-binding GTPa 99.3 2E-11 4.3E-16 81.8 7.6 144 17-176 14-200 (202)
311 KOG1707 Predicted Ras related/ 99.3 3E-10 6.5E-15 87.1 14.2 155 9-176 418-582 (625)
312 KOG1144 Translation initiation 99.3 3.7E-11 8.1E-16 94.2 9.6 156 14-177 473-687 (1064)
313 COG0050 TufB GTPases - transla 99.3 1.3E-11 2.8E-16 87.5 6.4 159 13-176 9-200 (394)
314 TIGR00993 3a0901s04IAP86 chlor 99.3 1.1E-10 2.5E-15 91.5 12.2 115 15-131 117-250 (763)
315 COG5019 CDC3 Septin family pro 99.3 4E-11 8.7E-16 87.4 8.9 136 14-156 21-200 (373)
316 TIGR02836 spore_IV_A stage IV 99.3 2.3E-10 5E-15 85.3 12.6 151 15-174 16-234 (492)
317 COG0480 FusA Translation elong 99.2 1.6E-10 3.5E-15 92.3 12.3 114 13-131 7-142 (697)
318 PTZ00258 GTP-binding protein; 99.2 1.1E-10 2.5E-15 87.4 10.7 80 14-93 19-125 (390)
319 PRK10463 hydrogenase nickel in 99.2 3.9E-11 8.5E-16 86.2 7.8 57 117-176 230-288 (290)
320 KOG0099 G protein subunit Galp 99.2 1.2E-10 2.6E-15 81.4 9.0 132 47-178 189-370 (379)
321 KOG2655 Septin family protein 99.2 1.6E-10 3.6E-15 84.8 9.6 120 15-139 20-180 (366)
322 PRK09601 GTP-binding protein Y 99.2 1.5E-10 3.2E-15 85.9 8.4 78 17-94 3-107 (364)
323 smart00053 DYNc Dynamin, GTPas 99.2 1.2E-09 2.6E-14 77.1 12.5 69 60-132 125-207 (240)
324 cd01900 YchF YchF subfamily. 99.2 1.1E-10 2.5E-15 83.8 7.1 75 19-93 1-102 (274)
325 KOG0085 G protein subunit Galp 99.1 1E-10 2.2E-15 80.5 5.5 134 45-178 184-350 (359)
326 COG5258 GTPBP1 GTPase [General 99.1 2.8E-09 6E-14 78.4 11.7 156 13-173 114-335 (527)
327 KOG1547 Septin CDC10 and relat 99.1 4.3E-10 9.3E-15 77.7 6.8 139 16-161 46-227 (336)
328 KOG2486 Predicted GTPase [Gene 99.1 2.3E-10 4.9E-15 80.6 5.3 162 9-175 129-314 (320)
329 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 4.8E-10 1E-14 73.3 6.4 52 18-70 85-138 (141)
330 cd01858 NGP_1 NGP-1. Autoanti 99.1 5.3E-10 1.1E-14 74.4 6.6 55 15-69 101-156 (157)
331 KOG0705 GTPase-activating prot 99.0 3.4E-10 7.5E-15 86.3 5.5 156 15-178 29-190 (749)
332 KOG0448 Mitofusin 1 GTPase, in 99.0 7.2E-09 1.6E-13 81.1 12.2 152 5-161 98-310 (749)
333 KOG0468 U5 snRNP-specific prot 99.0 1E-09 2.2E-14 85.5 7.6 112 13-129 125-261 (971)
334 cd04178 Nucleostemin_like Nucl 99.0 1E-09 2.2E-14 74.0 6.4 55 14-69 115-171 (172)
335 cd01855 YqeH YqeH. YqeH is an 99.0 9E-10 1.9E-14 75.6 6.3 98 73-177 24-125 (190)
336 KOG1954 Endocytosis/signaling 99.0 5.5E-09 1.2E-13 76.6 10.3 116 14-133 56-227 (532)
337 cd01859 MJ1464 MJ1464. This f 99.0 2.4E-09 5.2E-14 71.2 7.6 95 73-177 2-96 (156)
338 KOG1486 GTP-binding protein DR 99.0 5.3E-08 1.1E-12 68.1 14.0 84 14-97 60-153 (364)
339 PRK12289 GTPase RsgA; Reviewed 99.0 3.2E-09 6.9E-14 79.1 8.0 92 75-175 81-173 (352)
340 cd01859 MJ1464 MJ1464. This f 98.9 5E-09 1.1E-13 69.6 7.7 55 15-69 100-155 (156)
341 COG0012 Predicted GTPase, prob 98.9 1.1E-08 2.4E-13 75.3 8.7 79 16-94 2-108 (372)
342 cd01855 YqeH YqeH. YqeH is an 98.9 5E-09 1.1E-13 71.9 6.5 54 15-69 126-189 (190)
343 cd01856 YlqF YlqF. Proteins o 98.9 6.1E-09 1.3E-13 70.3 6.6 56 14-70 113-170 (171)
344 PRK09563 rbgA GTPase YlqF; Rev 98.9 7.4E-09 1.6E-13 75.5 7.2 56 14-70 119-176 (287)
345 TIGR03596 GTPase_YlqF ribosome 98.9 6.9E-09 1.5E-13 75.3 6.8 56 14-70 116-173 (276)
346 PRK12288 GTPase RsgA; Reviewed 98.9 1.5E-08 3.2E-13 75.5 8.5 89 81-175 118-206 (347)
347 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.8E-08 3.8E-13 73.5 8.1 88 78-174 73-161 (287)
348 KOG1491 Predicted GTP-binding 98.8 2E-08 4.2E-13 72.9 7.9 80 14-93 18-124 (391)
349 COG5192 BMS1 GTP-binding prote 98.8 3.1E-08 6.6E-13 76.5 8.8 140 15-161 68-210 (1077)
350 cd01849 YlqF_related_GTPase Yl 98.8 2.2E-08 4.8E-13 66.5 7.2 53 14-69 98-154 (155)
351 KOG0460 Mitochondrial translat 98.8 4.6E-09 1E-13 76.1 3.9 144 13-160 51-218 (449)
352 KOG0410 Predicted GTP binding 98.8 1.5E-08 3.2E-13 73.1 6.2 149 14-177 176-341 (410)
353 PF03193 DUF258: Protein of un 98.8 8.6E-09 1.9E-13 68.1 4.5 35 4-40 25-59 (161)
354 PRK00098 GTPase RsgA; Reviewed 98.8 2E-08 4.4E-13 73.6 6.8 86 80-174 77-164 (298)
355 TIGR03597 GTPase_YqeH ribosome 98.8 6.2E-09 1.3E-13 78.1 4.2 98 70-175 50-151 (360)
356 TIGR00092 GTP-binding protein 98.8 7.9E-08 1.7E-12 71.6 9.2 78 17-94 3-108 (368)
357 KOG0459 Polypeptide release fa 98.7 1.2E-08 2.6E-13 75.5 4.6 157 11-169 74-278 (501)
358 COG1161 Predicted GTPases [Gen 98.7 2.2E-08 4.8E-13 74.0 6.0 55 14-69 130-186 (322)
359 KOG0463 GTP-binding protein GP 98.7 6.5E-08 1.4E-12 71.3 8.3 153 16-173 133-354 (641)
360 cd01858 NGP_1 NGP-1. Autoanti 98.7 8.7E-08 1.9E-12 63.8 8.1 89 79-176 4-94 (157)
361 KOG1143 Predicted translation 98.7 5.5E-08 1.2E-12 71.6 7.2 153 14-171 165-382 (591)
362 cd01851 GBP Guanylate-binding 98.7 7.5E-07 1.6E-11 62.7 12.3 81 15-95 6-103 (224)
363 cd01849 YlqF_related_GTPase Yl 98.7 8E-08 1.7E-12 63.8 6.9 83 85-176 1-84 (155)
364 KOG0464 Elongation factor G [T 98.7 4.6E-09 9.9E-14 78.2 0.0 128 12-144 33-184 (753)
365 PRK12289 GTPase RsgA; Reviewed 98.6 9.3E-08 2E-12 71.3 6.6 34 5-40 163-196 (352)
366 KOG0467 Translation elongation 98.6 6.5E-08 1.4E-12 76.6 5.7 111 13-128 6-135 (887)
367 PRK12288 GTPase RsgA; Reviewed 98.6 1.3E-07 2.9E-12 70.5 6.8 34 5-40 196-229 (347)
368 KOG0465 Mitochondrial elongati 98.6 1.8E-07 3.8E-12 72.7 7.3 113 14-131 37-170 (721)
369 PRK14974 cell division protein 98.6 7.4E-07 1.6E-11 66.1 10.2 94 59-170 222-323 (336)
370 PRK10416 signal recognition pa 98.6 2.4E-06 5.2E-11 63.1 12.4 138 15-169 113-302 (318)
371 KOG0466 Translation initiation 98.6 2.5E-08 5.4E-13 71.5 1.6 159 14-177 36-241 (466)
372 TIGR00157 ribosome small subun 98.6 1.7E-07 3.6E-12 66.9 5.7 52 17-72 121-183 (245)
373 cd03112 CobW_like The function 98.6 4.9E-07 1.1E-11 60.2 7.6 64 59-129 86-158 (158)
374 KOG3859 Septins (P-loop GTPase 98.5 1.3E-07 2.8E-12 67.0 4.9 122 9-135 35-194 (406)
375 COG1618 Predicted nucleotide k 98.5 3.1E-06 6.8E-11 55.4 10.8 147 15-179 4-178 (179)
376 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.5E-07 7.6E-12 59.8 6.6 78 77-164 5-84 (141)
377 cd01856 YlqF YlqF. Proteins o 98.5 1.9E-07 4.1E-12 63.1 5.4 89 76-176 12-100 (171)
378 TIGR03348 VI_IcmF type VI secr 98.5 1.4E-06 3E-11 74.6 11.4 111 19-131 114-257 (1169)
379 KOG1487 GTP-binding protein DR 98.5 8.9E-07 1.9E-11 62.3 8.3 81 17-97 60-150 (358)
380 TIGR03596 GTPase_YlqF ribosome 98.5 7.7E-07 1.7E-11 64.7 8.0 91 75-177 13-103 (276)
381 TIGR00064 ftsY signal recognit 98.5 2.6E-06 5.6E-11 61.7 10.4 94 58-169 153-260 (272)
382 TIGR01425 SRP54_euk signal rec 98.5 3.8E-06 8.2E-11 64.1 11.0 109 16-131 100-253 (429)
383 TIGR03597 GTPase_YqeH ribosome 98.4 4.2E-07 9.1E-12 68.4 5.5 55 16-71 154-215 (360)
384 PRK13796 GTPase YqeH; Provisio 98.4 7.5E-07 1.6E-11 67.1 6.7 55 15-70 159-220 (365)
385 cd01854 YjeQ_engC YjeQ/EngC. 98.4 1.4E-06 3E-11 63.7 6.9 33 6-40 153-185 (287)
386 PRK00098 GTPase RsgA; Reviewed 98.4 1.4E-06 3E-11 64.0 6.8 34 5-40 155-188 (298)
387 COG1162 Predicted GTPases [Gen 98.4 1.3E-06 2.7E-11 63.2 6.3 34 5-40 155-188 (301)
388 PRK09563 rbgA GTPase YlqF; Rev 98.3 2.4E-06 5.2E-11 62.4 7.5 90 76-177 17-106 (287)
389 PF00448 SRP54: SRP54-type pro 98.3 1.9E-06 4.2E-11 59.3 6.1 108 17-132 2-155 (196)
390 COG0523 Putative GTPases (G3E 98.3 1.6E-05 3.5E-10 58.8 10.8 131 19-159 4-184 (323)
391 PRK13796 GTPase YqeH; Provisio 98.3 3.4E-06 7.3E-11 63.7 7.3 95 73-176 59-158 (365)
392 KOG0447 Dynamin-like GTP bindi 98.3 3.5E-05 7.5E-10 59.9 12.6 81 60-143 412-507 (980)
393 PRK01889 GTPase RsgA; Reviewed 98.3 8.2E-06 1.8E-10 61.4 9.1 84 81-173 110-193 (356)
394 cd03114 ArgK-like The function 98.3 1.6E-05 3.5E-10 52.3 9.4 58 59-128 91-148 (148)
395 PRK14722 flhF flagellar biosyn 98.3 1.4E-05 2.9E-10 60.2 10.0 118 14-131 135-295 (374)
396 KOG1424 Predicted GTP-binding 98.2 1.7E-06 3.7E-11 66.2 4.4 53 16-69 314-368 (562)
397 COG1419 FlhF Flagellar GTP-bin 98.2 1.7E-05 3.6E-10 59.7 9.3 109 16-131 203-352 (407)
398 KOG1534 Putative transcription 98.2 1.2E-05 2.6E-10 55.1 7.5 113 60-176 98-250 (273)
399 PRK11889 flhF flagellar biosyn 98.2 1.8E-05 3.8E-10 59.7 8.7 112 14-132 239-392 (436)
400 PF09547 Spore_IV_A: Stage IV 98.1 0.00011 2.3E-09 55.8 11.9 23 16-38 17-39 (492)
401 cd03115 SRP The signal recogni 98.1 4.5E-05 9.7E-10 51.5 9.2 66 59-131 82-153 (173)
402 PRK13695 putative NTPase; Prov 98.1 0.00017 3.6E-09 48.8 11.3 21 17-37 1-21 (174)
403 PRK12727 flagellar biosynthesi 98.1 3.2E-05 7E-10 60.4 8.6 111 14-131 348-498 (559)
404 cd01983 Fer4_NifH The Fer4_Nif 98.1 5.4E-05 1.2E-09 45.6 8.1 68 19-95 2-70 (99)
405 PRK14721 flhF flagellar biosyn 98.0 1.4E-05 3E-10 61.1 6.3 110 15-131 190-340 (420)
406 PRK00771 signal recognition pa 98.0 9.4E-05 2E-09 57.0 10.5 111 14-131 93-246 (437)
407 PF02492 cobW: CobW/HypB/UreG, 98.0 2.2E-05 4.8E-10 53.3 6.2 109 19-133 3-157 (178)
408 KOG2485 Conserved ATP/GTP bind 98.0 6.4E-06 1.4E-10 59.5 3.6 56 14-69 141-205 (335)
409 PRK11537 putative GTP-binding 98.0 4.4E-05 9.5E-10 56.6 7.7 66 60-132 91-165 (318)
410 PRK05703 flhF flagellar biosyn 98.0 6.9E-05 1.5E-09 57.7 8.7 66 59-131 299-371 (424)
411 PF06858 NOG1: Nucleolar GTP-b 97.9 4.4E-05 9.5E-10 41.1 5.2 44 83-128 13-58 (58)
412 PRK10867 signal recognition pa 97.9 8.8E-05 1.9E-09 57.1 8.8 66 59-131 183-254 (433)
413 TIGR00959 ffh signal recogniti 97.9 6.5E-05 1.4E-09 57.7 8.0 66 59-131 182-253 (428)
414 TIGR02475 CobW cobalamin biosy 97.9 7.5E-05 1.6E-09 55.9 8.2 21 19-39 7-27 (341)
415 KOG2484 GTPase [General functi 97.9 7.8E-06 1.7E-10 60.8 2.9 55 14-69 250-306 (435)
416 PF13207 AAA_17: AAA domain; P 97.9 1.1E-05 2.4E-10 51.1 3.0 21 18-38 1-21 (121)
417 COG0563 Adk Adenylate kinase a 97.9 1.1E-05 2.4E-10 54.7 3.0 23 17-39 1-23 (178)
418 COG3523 IcmF Type VI protein s 97.9 0.00014 2.9E-09 61.9 9.9 111 19-131 128-270 (1188)
419 PRK08118 topology modulation p 97.9 1.2E-05 2.5E-10 54.1 3.0 23 17-39 2-24 (167)
420 PRK12726 flagellar biosynthesi 97.9 6.9E-05 1.5E-09 56.4 7.3 25 14-38 204-228 (407)
421 PRK14723 flhF flagellar biosyn 97.9 5.9E-05 1.3E-09 61.5 7.3 110 17-131 186-337 (767)
422 PRK06995 flhF flagellar biosyn 97.9 4.2E-05 9.1E-10 59.4 6.2 23 16-38 256-278 (484)
423 PF13555 AAA_29: P-loop contai 97.9 1.6E-05 3.4E-10 43.9 2.8 20 18-37 25-44 (62)
424 PRK12724 flagellar biosynthesi 97.9 5.3E-05 1.2E-09 57.7 6.5 109 16-131 223-373 (432)
425 KOG1533 Predicted GTPase [Gene 97.9 1.8E-05 4E-10 55.0 3.7 20 17-36 3-22 (290)
426 PRK07261 topology modulation p 97.8 1.4E-05 3.1E-10 53.9 3.1 23 17-39 1-23 (171)
427 PRK06731 flhF flagellar biosyn 97.8 0.0002 4.2E-09 51.8 8.4 111 15-132 74-226 (270)
428 cd03111 CpaE_like This protein 97.8 0.00024 5.2E-09 44.0 7.8 101 19-126 2-106 (106)
429 cd02042 ParA ParA and ParB of 97.8 0.00022 4.8E-09 43.8 7.4 81 19-107 2-84 (104)
430 KOG0780 Signal recognition par 97.8 6.5E-05 1.4E-09 56.0 5.5 96 14-109 99-239 (483)
431 PRK12723 flagellar biosynthesi 97.7 0.00039 8.5E-09 52.8 9.6 109 16-131 174-326 (388)
432 PF13671 AAA_33: AAA domain; P 97.7 2.3E-05 5.1E-10 51.0 2.7 20 19-38 2-21 (143)
433 cd02038 FleN-like FleN is a me 97.7 0.00026 5.6E-09 46.1 7.5 105 21-130 5-110 (139)
434 COG0552 FtsY Signal recognitio 97.7 0.00012 2.6E-09 53.7 6.4 110 14-131 137-298 (340)
435 COG0541 Ffh Signal recognition 97.7 0.00018 4E-09 54.5 7.5 112 13-131 97-253 (451)
436 KOG2423 Nucleolar GTPase [Gene 97.7 1.9E-05 4.2E-10 58.9 2.3 82 13-97 304-388 (572)
437 PF13521 AAA_28: AAA domain; P 97.7 1.8E-05 3.9E-10 52.9 1.9 22 18-39 1-22 (163)
438 PRK10751 molybdopterin-guanine 97.7 0.00014 3.1E-09 48.9 6.1 24 16-39 6-29 (173)
439 PF00005 ABC_tran: ABC transpo 97.7 3.4E-05 7.3E-10 50.0 3.1 26 15-40 10-35 (137)
440 COG1162 Predicted GTPases [Gen 97.7 0.00013 2.8E-09 53.0 6.0 91 79-175 75-165 (301)
441 cd02019 NK Nucleoside/nucleoti 97.7 4.2E-05 9.2E-10 43.5 2.8 21 19-39 2-22 (69)
442 COG1136 SalX ABC-type antimicr 97.7 3.5E-05 7.5E-10 53.9 2.9 23 18-40 33-55 (226)
443 COG1126 GlnQ ABC-type polar am 97.7 3.9E-05 8.3E-10 53.0 2.9 26 15-40 27-52 (240)
444 PF03266 NTPase_1: NTPase; In 97.7 6.9E-05 1.5E-09 50.4 4.1 21 18-38 1-21 (168)
445 COG1116 TauB ABC-type nitrate/ 97.7 3.7E-05 8.1E-10 54.1 2.9 22 18-39 31-52 (248)
446 PF04665 Pox_A32: Poxvirus A32 97.7 5E-05 1.1E-09 53.7 3.5 30 11-40 8-37 (241)
447 cd00009 AAA The AAA+ (ATPases 97.7 0.00067 1.4E-08 43.8 8.7 26 15-40 18-43 (151)
448 PRK01889 GTPase RsgA; Reviewed 97.6 8.1E-05 1.8E-09 56.1 4.6 35 5-40 185-219 (356)
449 PRK14530 adenylate kinase; Pro 97.6 5.2E-05 1.1E-09 53.1 3.4 23 16-38 3-25 (215)
450 PRK05480 uridine/cytidine kina 97.6 5.2E-05 1.1E-09 52.9 3.2 26 13-38 3-28 (209)
451 cd03116 MobB Molybdenum is an 97.6 0.00018 3.9E-09 47.9 5.4 48 18-71 3-50 (159)
452 TIGR00235 udk uridine kinase. 97.6 5.4E-05 1.2E-09 52.7 3.0 26 13-38 3-28 (207)
453 PRK10078 ribose 1,5-bisphospho 97.6 6E-05 1.3E-09 51.6 3.1 22 18-39 4-25 (186)
454 COG1120 FepC ABC-type cobalami 97.6 5.3E-05 1.2E-09 54.0 2.8 22 17-38 29-50 (258)
455 PRK06217 hypothetical protein; 97.6 6E-05 1.3E-09 51.4 3.0 23 17-39 2-24 (183)
456 PRK03839 putative kinase; Prov 97.6 6.7E-05 1.4E-09 51.0 3.1 22 18-39 2-23 (180)
457 TIGR02322 phosphon_PhnN phosph 97.6 5.9E-05 1.3E-09 51.2 2.7 22 18-39 3-24 (179)
458 PRK08233 hypothetical protein; 97.6 7.7E-05 1.7E-09 50.6 3.3 25 15-39 2-26 (182)
459 smart00382 AAA ATPases associa 97.6 8.9E-05 1.9E-09 47.6 3.4 25 16-40 2-26 (148)
460 cd00071 GMPK Guanosine monopho 97.5 7.2E-05 1.6E-09 48.6 2.8 21 19-39 2-22 (137)
461 COG1121 ZnuC ABC-type Mn/Zn tr 97.5 6.8E-05 1.5E-09 53.3 2.9 22 17-38 31-52 (254)
462 cd00820 PEPCK_HprK Phosphoenol 97.5 7.6E-05 1.6E-09 46.0 2.7 22 16-37 15-36 (107)
463 PF11111 CENP-M: Centromere pr 97.5 0.0019 4.1E-08 43.1 9.4 146 6-177 5-153 (176)
464 PF00004 AAA: ATPase family as 97.5 7.5E-05 1.6E-09 47.8 2.9 21 19-39 1-21 (132)
465 COG0194 Gmk Guanylate kinase [ 97.5 6.3E-05 1.4E-09 50.7 2.4 25 16-40 4-28 (191)
466 PF13238 AAA_18: AAA domain; P 97.5 7.8E-05 1.7E-09 47.5 2.7 21 19-39 1-21 (129)
467 cd03238 ABC_UvrA The excision 97.5 8.6E-05 1.9E-09 50.3 3.0 25 14-38 19-43 (176)
468 PRK14738 gmk guanylate kinase; 97.5 9.8E-05 2.1E-09 51.4 3.3 26 14-39 11-36 (206)
469 COG3840 ThiQ ABC-type thiamine 97.5 8.5E-05 1.8E-09 50.1 2.8 24 16-39 25-48 (231)
470 KOG3347 Predicted nucleotide k 97.5 7.9E-05 1.7E-09 48.3 2.5 25 14-38 5-29 (176)
471 PRK06547 hypothetical protein; 97.5 0.00016 3.5E-09 48.8 4.1 30 10-39 9-38 (172)
472 TIGR03263 guanyl_kin guanylate 97.5 8.8E-05 1.9E-09 50.4 2.9 22 18-39 3-24 (180)
473 cd03222 ABC_RNaseL_inhibitor T 97.5 9E-05 2E-09 50.3 2.8 27 14-40 23-49 (177)
474 COG3638 ABC-type phosphate/pho 97.5 9E-05 1.9E-09 51.8 2.8 21 18-38 32-52 (258)
475 cd02023 UMPK Uridine monophosp 97.5 8.3E-05 1.8E-09 51.4 2.7 21 19-39 2-22 (198)
476 cd01130 VirB11-like_ATPase Typ 97.5 0.00011 2.5E-09 50.2 3.2 31 9-40 19-49 (186)
477 cd03264 ABC_drug_resistance_li 97.5 0.00011 2.4E-09 51.3 3.1 24 16-40 26-49 (211)
478 PRK14737 gmk guanylate kinase; 97.5 0.00011 2.3E-09 50.4 2.9 25 16-40 4-28 (186)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00011 2.5E-09 51.4 3.1 26 15-40 29-54 (218)
480 PRK13949 shikimate kinase; Pro 97.5 0.00012 2.6E-09 49.3 3.0 21 18-38 3-23 (169)
481 cd03261 ABC_Org_Solvent_Resist 97.4 0.00012 2.6E-09 52.0 3.1 26 15-40 25-50 (235)
482 PRK14531 adenylate kinase; Pro 97.4 0.00013 2.8E-09 49.8 3.2 23 16-38 2-24 (183)
483 PF07728 AAA_5: AAA domain (dy 97.4 0.00012 2.7E-09 47.5 2.9 21 18-38 1-21 (139)
484 PRK14532 adenylate kinase; Pro 97.4 0.00012 2.7E-09 50.0 3.1 22 17-38 1-22 (188)
485 TIGR00960 3a0501s02 Type II (G 97.4 0.00012 2.7E-09 51.2 3.1 26 15-40 28-53 (216)
486 cd03225 ABC_cobalt_CbiO_domain 97.4 0.00013 2.7E-09 51.0 3.1 26 15-40 26-51 (211)
487 TIGR01166 cbiO cobalt transpor 97.4 0.00012 2.5E-09 50.3 2.9 26 15-40 17-42 (190)
488 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00014 3.1E-09 49.6 3.3 22 16-37 3-24 (188)
489 cd02025 PanK Pantothenate kina 97.4 0.0001 2.2E-09 51.9 2.5 20 19-38 2-21 (220)
490 cd03226 ABC_cobalt_CbiO_domain 97.4 0.00013 2.8E-09 50.7 3.1 26 15-40 25-50 (205)
491 PRK00300 gmk guanylate kinase; 97.4 0.00016 3.4E-09 50.2 3.4 26 14-39 3-28 (205)
492 COG4559 ABC-type hemin transpo 97.4 0.00013 2.8E-09 50.4 2.8 23 18-40 29-51 (259)
493 cd03259 ABC_Carb_Solutes_like 97.4 0.00014 3E-09 50.8 3.1 26 15-40 25-50 (213)
494 PF05621 TniB: Bacterial TniB 97.4 0.00093 2E-08 48.7 7.3 105 14-127 59-190 (302)
495 PTZ00088 adenylate kinase 1; P 97.4 0.00016 3.4E-09 51.1 3.3 24 15-38 5-28 (229)
496 TIGR02673 FtsE cell division A 97.4 0.00014 3.1E-09 50.8 3.1 26 15-40 27-52 (214)
497 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0018 3.9E-08 46.9 8.8 33 8-40 72-104 (264)
498 cd03265 ABC_DrrA DrrA is the A 97.4 0.00014 3.1E-09 51.0 3.1 26 15-40 25-50 (220)
499 KOG4273 Uncharacterized conser 97.4 0.0015 3.3E-08 46.2 8.0 110 17-131 5-123 (418)
500 PF00437 T2SE: Type II/IV secr 97.4 0.00014 3E-09 52.7 3.1 27 14-40 125-151 (270)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.7e-39 Score=220.17 Aligned_cols=179 Identities=84% Similarity=1.349 Sum_probs=157.7
Q ss_pred CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH 79 (180)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 79 (180)
||..++.+ ++.+.++.+||+++|++|||||||++++..+.+..+.||++..+..+...++.+.+||+||+++++.++..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 88777766 55667788999999999999999999999887777789999888888888999999999999999999999
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+++++|++++|||++++++++....++..++.....+++|+++++||+|+......+++...++......+.+.+++|||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 99999999999999999999999888888876544567999999999999887777787877777665566677889999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030289 160 TSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (180)
++|+|++++|++|.+.+.++
T Consensus 161 ~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999998775
No 2
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.2e-38 Score=217.25 Aligned_cols=179 Identities=80% Similarity=1.300 Sum_probs=155.6
Q ss_pred CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH 79 (180)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 79 (180)
||.+++.+ +..+.++++||+++|++|||||||++++..+.+..+.||.+..+..+..+++.+.+||+||+++++..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 88877766 55667788999999999999999999998877667788999888888889999999999999999999999
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+++++|++++|+|+++++++.....++..++......++|+++|+||+|+.+....+++...++....+...+.++++||
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa 160 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCA 160 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeC
Confidence 99999999999999999999999888888866544457899999999999776666677777777666666778889999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030289 160 TSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (180)
++|.|++++|++|.+.+.++
T Consensus 161 ~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 161 TTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 3
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=1.2e-37 Score=211.13 Aligned_cols=174 Identities=80% Similarity=1.304 Sum_probs=149.8
Q ss_pred CcchHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh
Q 030289 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY 80 (180)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 80 (180)
||...+ ..+.++.+||+++|++|||||||++++..+.+..+.||++..+..+....+.+.+||+||++.++..+..+
T Consensus 1 ~~~~~~---~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~ 77 (175)
T smart00177 1 MGKLFS---KLFGNKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHY 77 (175)
T ss_pred Cchhhh---hhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHH
Confidence 676544 33556789999999999999999999987776677899998888888888999999999999999999999
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
++++|++++|+|++++++++....|+..+......+++|+++|+||+|+.+....+++...++......+.+.++++||+
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 157 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCAT 157 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCC
Confidence 99999999999999999999999999888765444678999999999998766667777777766666667788899999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030289 161 SGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~ 177 (180)
+|.|++++|++|.+.+.
T Consensus 158 ~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 158 SGDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 99999999999988753
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=1.1e-37 Score=210.03 Aligned_cols=164 Identities=74% Similarity=1.261 Sum_probs=143.0
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
++.++.+||+++|++|||||||++++..+.+..+.||++..+..+...++.+.+|||||+++++..++.+++++|++++|
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 35567899999999999999999999987776778899988877878889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
||++++.+++....|+..++......++|+++|+||+|+......+++...++........+.++++||++|.|++++|+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 99999999999999998887654446789999999999977666677777766655555667899999999999999999
Q ss_pred HHHH
Q 030289 171 WLSS 174 (180)
Q Consensus 171 ~l~~ 174 (180)
+|.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 9875
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-38 Score=207.68 Aligned_cols=166 Identities=18% Similarity=0.330 Sum_probs=143.3
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccC
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
..+.+.+|++|+|+.+|||||||+||+.+. ..+|.+|+|+++....+ ..+.+++|||+||++|+.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 345677999999999999999999999998 66788999987755444 4678999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|+|||+++..+|+...+|+.++.......++-+++|+||.||.+.+.. ..+.+...+++.++.|+++||+.|.||
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAkel~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKELNAEFIETSAKAGENV 173 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHHhCcEEEEecccCCCCH
Confidence 99999999999999999999999988776556889999999999986543 334444566777889999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|..|..++...
T Consensus 174 k~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 174 KQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHhccCc
Confidence 99999998877643
No 6
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-38 Score=207.40 Aligned_cols=162 Identities=23% Similarity=0.379 Sum_probs=135.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
..-|||+++|++|||||+|+.||+.+. ..++..|+|+++.. +.+ +.++++||||+||++++.....||+++|++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 457999999999999999999999999 55677899977654 333 6789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceE-EEEeeccCCCChHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWY-IQAACATSGQGLYE 167 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 167 (180)
+|||+++.++|+.+..|+.++..+. ...+|.++|+||||+.+...+.. ..+..++...+++ ++++||+++.||++
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~---~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVST---EEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCH---HHHHHHHHhcCCcceeecccCCccCHHH
Confidence 9999999999999999999996654 45689999999999987543221 1112233445566 99999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|..+...+.++
T Consensus 163 ~F~~la~~lk~~ 174 (205)
T KOG0084|consen 163 AFLTLAKELKQR 174 (205)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 7
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-38 Score=205.32 Aligned_cols=161 Identities=20% Similarity=0.387 Sum_probs=137.2
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCcccc-ccccceeEEEEEE--c--CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY--K--NVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
....+|++++|..+||||||+-|+..+.+.++ .||+|..+.+... . .+++.||||+|+++|.++.+.||++++++
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 35689999999999999999999999997775 7899977665444 4 48899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
|+|||+++.+||..++.|+.++.+... +++.+.+||||+|+.+.+. .++.. ..+.+.+..||++||+++.||
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~-----~yAe~~gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQ-----AYAESQGLLFFETSAKTGENV 155 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHH-----HHHHhcCCEEEEEecccccCH
Confidence 999999999999999999999977654 7788889999999988443 32222 233456778999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|..|.+.+...
T Consensus 156 ~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHHhccCc
Confidence 99999999988654
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=2e-36 Score=202.27 Aligned_cols=158 Identities=91% Similarity=1.424 Sum_probs=137.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (180)
+||+++|.+|||||||++++..+.+..+.||++.....+..+.+.+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999888766778999988877888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
++++....++..+.......+.|+++++||+|+.+....+++...++........+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 999999998888876544457899999999999765555566666666555566778899999999999999999864
No 9
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-36 Score=196.43 Aligned_cols=179 Identities=78% Similarity=1.270 Sum_probs=170.5
Q ss_pred CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH 79 (180)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 79 (180)
||..++++ ...+..++.+|+++|.-+|||||++++|..++..+..||+|++..++.++++.+.+||.+|+++++..|+.
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 89999988 55889999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
|+++.+++|||+|.+|++.+.+....+..++........|+++++||.|++..-+..++.+.+++.....+.+.+..|||
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 99999999999999999999999999999988877789999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030289 160 TSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (180)
.+|+|+.|.++++.+.+..+
T Consensus 161 ~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccccHHHHHHHHHHHHhcc
Confidence 99999999999999988765
No 10
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.2e-35 Score=199.87 Aligned_cols=166 Identities=49% Similarity=0.879 Sum_probs=141.9
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+...++..+||+++|++|||||||++++.+.....+.+|+++....+..++..+.+||+||++.++..+..+++++|+++
T Consensus 7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 44556778999999999999999999999887767778988888888888899999999999999889999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|+|++++++++....|+..++......+.|+++|+||+|+.+....+++...+........+++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 166 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQG 166 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHH
Confidence 99999999999998888888876544568999999999999876666666665554434456789999999999999999
Q ss_pred HHHHHH
Q 030289 169 LDWLSS 174 (180)
Q Consensus 169 ~~~l~~ 174 (180)
|+++.+
T Consensus 167 ~~~l~~ 172 (173)
T cd04154 167 IDWLVD 172 (173)
T ss_pred HHHHhc
Confidence 999864
No 11
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=4.8e-35 Score=198.19 Aligned_cols=168 Identities=52% Similarity=0.977 Sum_probs=154.1
Q ss_pred hhhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 9 KMLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 9 ~~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
++... .+++||+++|+.||||||+++++..+......||.+++...+...+..+.+||.+|+..++..|+.+++++|++
T Consensus 6 ~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 6 SKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp HHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred HHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecccccee
Confidence 34443 88999999999999999999999988877789999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC-CcceEEEEeeccCCCChH
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR-QRRWYIQAACATSGQGLY 166 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~ 166 (180)
+||+|+++.+.+.+....+..++......++|+++++||+|+.+....+++...+.+.... .+.+.++.||+.+|+|++
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence 9999999999999999999999887767789999999999999888888888888777765 778899999999999999
Q ss_pred HHHHHHHHHh
Q 030289 167 EGLDWLSSNV 176 (180)
Q Consensus 167 ~~~~~l~~~~ 176 (180)
+.++||.+++
T Consensus 166 e~l~WL~~~~ 175 (175)
T PF00025_consen 166 EGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 12
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=5.9e-35 Score=197.05 Aligned_cols=162 Identities=61% Similarity=1.069 Sum_probs=138.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
||+++|++|||||||++++.+..+..+.||++..+..+..+++.+.+||+||+.++...+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999888767889999888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
++.....|+..+.+.....+.|+++|+||+|+.+....+++......... ....+.+++|||++|.||+++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999986654567899999999999766666666555433221 22345789999999999999999999887
Q ss_pred hhc
Q 030289 177 SAK 179 (180)
Q Consensus 177 ~~~ 179 (180)
.+.
T Consensus 161 ~~~ 163 (169)
T cd04158 161 VAA 163 (169)
T ss_pred hhc
Confidence 653
No 13
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=5.6e-35 Score=198.03 Aligned_cols=169 Identities=55% Similarity=0.974 Sum_probs=144.4
Q ss_pred HHHhhhc-ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 6 SRLKMLF-ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 6 ~~~~~~~-~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
..+-+.+ +++.+||+++|++|+|||||++++..+.+..+.||.+..+..+..++.++.+||+||++.+...+..+++++
T Consensus 4 ~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 4 SSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred hHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcC
Confidence 3443344 456899999999999999999999988866778899988888888899999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
|++++|+|+++++++.....++..+.......++|+++++||+|+......+++.+.++........++++++||++|.|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~g 163 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEG 163 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCC
Confidence 99999999999998888888888887654446799999999999977556667777777665556677899999999999
Q ss_pred hHHHHHHHHH
Q 030289 165 LYEGLDWLSS 174 (180)
Q Consensus 165 i~~~~~~l~~ 174 (180)
++++|++|.+
T Consensus 164 i~e~~~~l~~ 173 (174)
T cd04153 164 LPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 14
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-35 Score=183.35 Aligned_cols=178 Identities=67% Similarity=1.160 Sum_probs=171.1
Q ss_pred CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH 79 (180)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 79 (180)
||..|+.+ .+.+..++++|+.+|..++||||++..|+.+......||+|++..++.++++.+.+||.+|+++.+..|++
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrh 80 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 80 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHh
Confidence 89889988 88899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
|+.+..++|||+|+.+++.+++.+..+..++..++....|+++.+||-|++....+.++.+.+.+..++.+.+.+.++|+
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCA 160 (180)
T ss_pred hccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
.+|+++.|-+.|+.+.+..
T Consensus 161 ~~gdgL~eglswlsnn~~~ 179 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNLKE 179 (180)
T ss_pred ccchhHHHHHHHHHhhccC
Confidence 9999999999999987764
No 15
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=197.33 Aligned_cols=164 Identities=21% Similarity=0.378 Sum_probs=137.5
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.....+||+++|++|||||+++.+|..+.+ ..+..|+++++. ++.. ..+.+++|||+||++++..+..|+++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 346789999999999999999999999884 455678886654 4544 55789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+++|||++++.+++.+..|+..+-.+. ..++|.++|+||+|+...+.+ ..+.+...+...+++|++|||++|.||+
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V---~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQV---SKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccccc---cHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 999999999999999999999886654 358999999999999874432 2233334445668899999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
|+|-.+++.+.++
T Consensus 164 eaF~~La~~i~~k 176 (207)
T KOG0078|consen 164 EAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 16
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=3.2e-34 Score=191.53 Aligned_cols=157 Identities=64% Similarity=1.124 Sum_probs=133.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
||+++|++++|||||++++..+....+.||++.....+...+..+++|||||+..++..+..+++++|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998887666778888888778888899999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
++.....++..++......+.|+++|+||+|+.+.....++...++.......+.+++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 88777777776655444457999999999999866556666666655545555678999999999999999999975
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1e-34 Score=198.39 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=128.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+++|+.|||||||+++|..+.+ .++.+|.+..+ ..+..+ .+.+.+|||+|+++|..+++.+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 3569999999999999999999998774 34445665544 344444 478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+... .++.|+++|+||+|+.... ..++.. ..++..++++++|||++|.||+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~-----~~a~~~~~~~~e~SAk~g~~V~ 156 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQ-----AYAERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHH-----HHHHHcCCEEEEecCCCCCCHH
Confidence 999999999999999999998654 3689999999999996533 222222 1223456789999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++|.++++.+..+
T Consensus 157 ~~F~~l~~~i~~~ 169 (189)
T cd04121 157 ESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 18
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=3.9e-34 Score=182.81 Aligned_cols=175 Identities=46% Similarity=0.832 Sum_probs=158.8
Q ss_pred HHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc
Q 030289 5 ISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN 83 (180)
Q Consensus 5 ~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 83 (180)
++-+ +.-.++++++|+++|+.||||||++++|.+.......||.++...++..+++++++||.+|+..++..|+.||..
T Consensus 4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence 3444 444467899999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCC
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSG 162 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~ 162 (180)
.|++|+|+|++|+.++++....+...+......+.|+++++||.|+..+...+++...+.+... ++.+++++.||+.+|
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg 163 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG 163 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence 9999999999999999999999888887666678999999999999988888888888887766 888999999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
+++.+.++|+.+.+.++
T Consensus 164 e~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSR 180 (185)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999887653
No 19
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.3e-35 Score=196.72 Aligned_cols=162 Identities=19% Similarity=0.245 Sum_probs=128.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+.+||+++|.+|||||||++++..+.+. .+.||++..+. .+.. ..+.+.+|||||++++..++..+++.+|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 3589999999999999999999988854 56678875443 3444 347899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
||++++.+++.+..|+..+.......++|+++|+||+|+.+....... .+...++..++++++|||++|.||+++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~---~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE---EGRNLAREFNCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHH---HHHHHHHHhCCEEEEEecCCCCCHHHHHH
Confidence 999999999999988766654333467999999999998654322211 11122234467899999999999999999
Q ss_pred HHHHHhhhc
Q 030289 171 WLSSNVSAK 179 (180)
Q Consensus 171 ~l~~~~~~~ 179 (180)
++++.+.++
T Consensus 158 ~l~~~~~~~ 166 (172)
T cd04141 158 GLVREIRRK 166 (172)
T ss_pred HHHHHHHHh
Confidence 999887654
No 20
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=189.11 Aligned_cols=162 Identities=21% Similarity=0.382 Sum_probs=139.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccccc-ccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||++||.+|+|||||+-+|..+.+....| |+|+++. .+.+ ..+++.||||+|+++|+.+++.||+++.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 557999999999999999999999988776666 4776554 3333 6688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|||++.+++|..+..|+.++-.+--.+++..++|+||.|..+++. +..+.++.+++++...|++|||++.+||+.+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~---V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV---VDREEGLKFARKHRCLFIECSAKTRENVQCC 165 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc---ccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence 9999999999999999999886665567888899999999775442 3446667778888899999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|++++.++.+
T Consensus 166 FeelveKIi~ 175 (209)
T KOG0080|consen 166 FEELVEKIIE 175 (209)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 21
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-33 Score=193.32 Aligned_cols=172 Identities=35% Similarity=0.583 Sum_probs=145.6
Q ss_pred hHHHHhhhcc--cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhc
Q 030289 4 VISRLKMLFA--RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYF 81 (180)
Q Consensus 4 ~~~~~~~~~~--~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 81 (180)
+++.+-+.+. .+.++|+++|++|||||||++++.++.+..+.||.+.....+..++.++.+||+||+..++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 82 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYF 82 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 4455523452 78899999999999999999999988766667888887777888899999999999999999999999
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC-------CcceEE
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR-------QRRWYI 154 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 154 (180)
.++|++++|+|+++++++.....++..+.......++|+++|+||+|+......+++.+.+++.... .....+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 9999999999999999998888888887765445678999999999998777788888887765432 245679
Q ss_pred EEeeccCCCChHHHHHHHHHH
Q 030289 155 QAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
++|||+++.|++++++||.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999865
No 22
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.5e-35 Score=199.71 Aligned_cols=164 Identities=15% Similarity=0.214 Sum_probs=129.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+..++||+++|++|||||||++++..+.+ ..+.||++..+. .+.. ..+.+.+|||+|+++|..+++.+++++|+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35688999999999999999999998884 556788875543 3333 4578999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---------hHHHhHhCCCccCCcce-EEEEe
Q 030289 89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMSV---------SEVTDKLGLHSLRQRRW-YIQAA 157 (180)
Q Consensus 89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~ 157 (180)
+|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+.... ..+....+...++..++ +|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999997 6888877554 257899999999998642100 01112222333445564 89999
Q ss_pred eccCCCC-hHHHHHHHHHHhhh
Q 030289 158 CATSGQG-LYEGLDWLSSNVSA 178 (180)
Q Consensus 158 Sa~~~~~-i~~~~~~l~~~~~~ 178 (180)
||++|.| |+++|..+++.+..
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 160 SALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc
Confidence 9999998 99999999997654
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.3e-35 Score=200.76 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=126.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
..+||+++|+.|||||||++++..+.+ ..+.||++..+. .+.. ..+.+.+|||+|+++|+.+++.+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 568999999999999999999998885 566788875543 2223 457899999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHh--------HhCCCccCCcc-eEEEEeec
Q 030289 91 VDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTD--------KLGLHSLRQRR-WYIQAACA 159 (180)
Q Consensus 91 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~--------~~~~~~~~~~~-~~~~~~Sa 159 (180)
||++++++++.+. .|+..+... .+++|+++|+||+|+.+... .+.+.. ..+...++..+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999999997 577666433 35799999999999975432 111111 11111222334 58999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
++|.||+++|.++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 24
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-35 Score=191.80 Aligned_cols=162 Identities=21% Similarity=0.356 Sum_probs=139.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccc-ccccceeEE----EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE----TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...||++++|+.|||||+|+-+|+.+++.+. ..|+|+.+. +++.+.+++++|||+|++.+++.+..||+.+.+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 5679999999999999999999999995544 458886653 34447789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|||++++++|..+..|+.++..+. .++..+++++||||+...+ ++..+.+..++++++..++++||+++.||+|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 9999999999999999999997653 4688999999999998765 33445566777788889999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|......+..+
T Consensus 160 F~nta~~Iy~~ 170 (216)
T KOG0098|consen 160 FINTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 25
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=3.2e-34 Score=197.63 Aligned_cols=157 Identities=20% Similarity=0.357 Sum_probs=124.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
.|+++|+.|||||||++++..+.+. .+.+|++..+ ..+..+ .+.+.+|||+|+++|+.++..+++++|++++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 5899999999999999999988854 4567776544 345554 4788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCC-cceEEEEeeccCCCChHHHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQ-RRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
++++++++.+..|+..+... ...+.|+++|+||+|+.+........ +...+.. .++.|++|||++|.||+++|.+
T Consensus 82 vtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~---~~~~a~~~~~~~~~etSAktg~gV~e~F~~ 157 (202)
T cd04120 82 ITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQ---GEKFAQQITGMRFCEASAKDNFNVDEIFLK 157 (202)
T ss_pred CcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHH---HHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999998866433 34579999999999996543322111 1111111 2467999999999999999999
Q ss_pred HHHHhhh
Q 030289 172 LSSNVSA 178 (180)
Q Consensus 172 l~~~~~~ 178 (180)
+++.+.+
T Consensus 158 l~~~~~~ 164 (202)
T cd04120 158 LVDDILK 164 (202)
T ss_pred HHHHHHH
Confidence 9988754
No 26
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=9.4e-34 Score=189.84 Aligned_cols=157 Identities=47% Similarity=0.832 Sum_probs=131.5
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND 95 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 95 (180)
+|+++|++|||||||+++|.+.. ...+.||++.....+...+..+.+|||||++++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 58999999999999999999875 3456788888777777788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 96 RERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
+.++.....|+..+..... ..++|+++|+||+|+.+....+++...+.........++++++||++|.|++++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 9998888888887765432 25799999999999987655555665555443334456799999999999999999987
Q ss_pred H
Q 030289 174 S 174 (180)
Q Consensus 174 ~ 174 (180)
+
T Consensus 161 ~ 161 (162)
T cd04157 161 A 161 (162)
T ss_pred c
Confidence 5
No 27
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.7e-34 Score=200.08 Aligned_cols=161 Identities=17% Similarity=0.300 Sum_probs=128.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (180)
+||+++|.+|||||||+++|..+.+..+.+|++..+.......+.+.+|||+|++.+..++..+++++|++++|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999876778898877766666788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-------------------C--CHhHHH---hHhCCC------c
Q 030289 97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-------------------M--SVSEVT---DKLGLH------S 146 (180)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-------------------~--~~~~~~---~~~~~~------~ 146 (180)
++++.+..|+..+... ...+.|+++|+||+|+.++ . ..++.. +..+.. .
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999988887654 2357899999999998651 1 112111 111100 0
Q ss_pred cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
.....++|++|||++|.||+++|..+++.+..
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 00112589999999999999999999987653
No 28
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=2.3e-33 Score=191.51 Aligned_cols=164 Identities=52% Similarity=0.886 Sum_probs=134.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE-----cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..+||+++|++|||||||++++..+.+..+.||.+.....+.. .++.+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988866667888766554443 46889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCCCChHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
|+|++++++++....|+..+.......+.|+++|+||+|+......+++......... ....++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 9999999999888888887766544467999999999999765555555544443322 223467999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
+.++.+.+.+
T Consensus 162 ~~~l~~~l~~ 171 (183)
T cd04152 162 LEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 29
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=1.7e-33 Score=189.57 Aligned_cols=157 Identities=36% Similarity=0.615 Sum_probs=136.5
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
+|+++|++|||||||++++.++....+.||++.....+..++..+.+||+||+..++..+..+++++|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999776566788999888888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC---CcceEEEEeeccCC------CChHHH
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR---QRRWYIQAACATSG------QGLYEG 168 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~~i~~~ 168 (180)
+++....|+..+.......++|+++|+||+|+.......++.+.+...... ...+.+++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 999999999988766444679999999999998877777777766655442 23568899999998 899999
Q ss_pred HHHHHH
Q 030289 169 LDWLSS 174 (180)
Q Consensus 169 ~~~l~~ 174 (180)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999975
No 30
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.6e-34 Score=195.37 Aligned_cols=160 Identities=19% Similarity=0.215 Sum_probs=126.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|+|||||+.++..+.+. ++.||++..+. .+.. ..+++.+|||+|+++++.++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999998854 57788875443 2333 45789999999999999999999999999999999
Q ss_pred CCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCC-------HhHHHhHhCCCccCCcce-EEEEeeccCCC
Q 030289 93 SNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMS-------VSEVTDKLGLHSLRQRRW-YIQAACATSGQ 163 (180)
Q Consensus 93 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (180)
++++++++.+ ..|+..+.... ++.|+++|+||+|+.+... ...+..+.+...++..+. +|++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 68988875442 5799999999999965321 001111122222334455 69999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
||+++|..+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999997654
No 31
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=2.4e-33 Score=187.21 Aligned_cols=157 Identities=74% Similarity=1.215 Sum_probs=139.2
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
||+++|++|||||||+++++++....+.+|.+.....+......+.+||+||+..+...+..+++++|++++|||+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999988777788999888888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
++.....++..+.......+.|+++++||+|+......+++.+.++........++++++||++|.|++++|.+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999999888877655578999999999999887767777766665544556789999999999999999999875
No 32
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5.6e-34 Score=195.53 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=128.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
+..+||+++|++|||||||++++..+.+ ..+.||.+..+. .+.. ..+.+.+|||||++++..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 5679999999999999999999998874 455677765443 2333 45678899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh--HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS--EVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+.......+.|+++|+||+|+.+..... +.. .. ....+++++++||++|.|+++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~-~~----~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQ-EL----AKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHhCCEEEEeeCCCCCCHHH
Confidence 99999999999999999888765445688999999999986543221 111 11 122346899999999999999
Q ss_pred HHHHHHHHhhh
Q 030289 168 GLDWLSSNVSA 178 (180)
Q Consensus 168 ~~~~l~~~~~~ 178 (180)
+|.++++.+.+
T Consensus 158 ~~~~l~~~l~~ 168 (189)
T PTZ00369 158 AFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 33
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=2.4e-33 Score=188.26 Aligned_cols=154 Identities=38% Similarity=0.682 Sum_probs=133.1
Q ss_pred EEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 19 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
|+++|++|||||||+++|.++. ...+.||.+.....+...+.++.+||+||+++++..+..+++++|++++|+|++++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 7899999999999999999876 456678988877777788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccC------CCChHHHHH
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATS------GQGLYEGLD 170 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~~i~~~~~ 170 (180)
++.....|+..+.... +++|+++|+||+|+......+++...+..... ++.++.+++|||++ ++||+++|+
T Consensus 82 s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 82 RLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 9999999988886542 68999999999999887777766666554444 55688999999998 999999999
Q ss_pred HHHH
Q 030289 171 WLSS 174 (180)
Q Consensus 171 ~l~~ 174 (180)
.++.
T Consensus 160 ~~~~ 163 (164)
T cd04162 160 QLIN 163 (164)
T ss_pred HHhc
Confidence 8864
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-34 Score=196.37 Aligned_cols=161 Identities=17% Similarity=0.212 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
++||+++|++|||||||++++..+. ...+.||++..+. .+.. ..+.+.+|||+|++.+..+++.+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 4799999999999999999999887 4466788765543 2333 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCC-H--------hHHHhHhCCCccCCcce-EEEEeecc
Q 030289 92 DSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMS-V--------SEVTDKLGLHSLRQRRW-YIQAACAT 160 (180)
Q Consensus 92 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~--------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (180)
|++++++++.+ ..|+..+... .++.|+++|+||+|+.++.. . ..+..+.+...++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 7888877554 25789999999999864210 0 00111222233344565 79999999
Q ss_pred CCCC-hHHHHHHHHHHhhh
Q 030289 161 SGQG-LYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~~~-i~~~~~~l~~~~~~ 178 (180)
+|+| |+++|..+++...+
T Consensus 159 ~~~~~v~~~F~~~~~~~~~ 177 (178)
T cd04131 159 TSEKSVRDIFHVATMACLN 177 (178)
T ss_pred cCCcCHHHHHHHHHHHHhc
Confidence 9995 99999999996553
No 35
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=4.2e-33 Score=191.39 Aligned_cols=164 Identities=38% Similarity=0.653 Sum_probs=139.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
..+.+||+++|++|||||||++++.++....+.||.+.....+...+..+.+||+||+..+...+..+++++|++++|+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D 95 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVD 95 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEE
Confidence 36689999999999999999999998887677788888888888889999999999999888889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-----------CCcceEEEEeeccC
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-----------RQRRWYIQAACATS 161 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~ 161 (180)
+++.+++.....++..+.......+.|+++++||+|+......+++.+.++.... ......+++|||++
T Consensus 96 ~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T cd00879 96 AADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVK 175 (190)
T ss_pred CCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecC
Confidence 9999999888888888876555567999999999999876666677666554221 12346799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030289 162 GQGLYEGLDWLSSNV 176 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (180)
|+|++++|+++.+.+
T Consensus 176 ~~gv~e~~~~l~~~~ 190 (190)
T cd00879 176 RQGYGEAFRWLSQYL 190 (190)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 36
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.5e-33 Score=189.72 Aligned_cols=157 Identities=18% Similarity=0.345 Sum_probs=126.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+||+++|++|||||||++++..+++. .+.+|.+..+. .+.. ..+++.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999988844 44457765543 3334 456889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
||++++++++.+..|+..+.... .++.|+++|+||+|+..+.. .++... + +...++++++|||++|.|++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQ-F----ADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHH-H----HHHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998875432 35789999999999976443 222221 1 2234568999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|..+++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988765
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.3e-33 Score=192.31 Aligned_cols=160 Identities=19% Similarity=0.375 Sum_probs=128.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE------------cCeEEEEEEcCCCCCChhhHHh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY------------KNVSFTVWDVGGQDKIRPLWRH 79 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~ 79 (180)
..+||+++|++|||||||++++..+. ...+.+|++..+.. +.. ..+.+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 46899999999999999999999887 44556777755432 322 2478999999999999999999
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEe
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
+++++|++++|||+++++++..+..|+..+......++.|+++|+||+|+.+... .++. ..+ +...+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KAL----ADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHH----HHHcCCeEEEE
Confidence 9999999999999999999999999998886654446789999999999975432 2222 111 12234679999
Q ss_pred eccCCCChHHHHHHHHHHhhhc
Q 030289 158 CATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
||++|.|++++|+++.+.+.++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 38
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=9.9e-35 Score=189.02 Aligned_cols=163 Identities=17% Similarity=0.285 Sum_probs=133.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEE--E--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
++.-+||++.|++|+|||||+|++.+++ ...+.+|++..+.+.. + .-+.++||||+|+++|+++.-.+|+++|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 4566999999999999999999999988 5566789986665433 3 446789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCCC--CH-hHHHhHhCCCccCCcceEEEEeeccC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNAM--SV-SEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
++|||++++++++.+..|..+++.... ....|+|+++||.|+.... .+ ....+.+.. .+.++|||++||++
T Consensus 86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~---s~gnipyfEtSAK~ 162 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK---SKGNIPYFETSAKE 162 (210)
T ss_pred EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH---hcCCceeEEecccc
Confidence 999999999999999999999987653 2457999999999986632 11 111112111 34578999999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
..||+++|..+.+.+.+
T Consensus 163 ~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 163 ATNVDEAFEEIARRALA 179 (210)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999988764
No 39
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=4.7e-33 Score=186.15 Aligned_cols=157 Identities=48% Similarity=0.916 Sum_probs=132.1
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (180)
+|+++|++|||||||++++..+.+....||.+.....+.. ....+.+||+||+..+...+..++.++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 5899999999999999999998876778888877766665 457899999999999998999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
.++.....|+..++......+.|+++|+||+|+......+++...+..... ...++++++|||++|+|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 999999988888876544468999999999999765555666655544333 335678999999999999999999865
No 40
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=8.2e-34 Score=192.34 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|||||||++++..+.+ ..+.||++..+. .+..++ +.+.+|||+|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 6999999999999999999998885 567788876554 444444 788999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH---------hHhCCCccCCcc-eEEEEeeccC
Q 030289 93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT---------DKLGLHSLRQRR-WYIQAACATS 161 (180)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~ 161 (180)
++++++++.+. .|+..+... .+++|+++|+||+|+.+.....+.. .+.+...++..+ +.|++|||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 99999999997 477666443 2579999999999986542211100 001111122333 6899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030289 162 GQGLYEGLDWLSSNV 176 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (180)
|.|++++|+.++++.
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998854
No 41
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=181.16 Aligned_cols=169 Identities=18% Similarity=0.371 Sum_probs=140.3
Q ss_pred HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhh
Q 030289 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHY 80 (180)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~ 80 (180)
++.++++ ...+|++++|+..+|||||+.+.++.. ...+..|+|+.+....+ +.+++++|||.|+++|+.++-.+
T Consensus 12 ~s~dqnF-DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay 90 (193)
T KOG0093|consen 12 DSIDQNF-DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY 90 (193)
T ss_pred ccccccc-cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence 3445666 456799999999999999999999888 55677898877654433 56899999999999999999999
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
+++++++|++||++|.+++..+..|..++... ...+.|+|+|+||||+.+++.. ..+.+...+.+.+..||++||+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvi---s~e~g~~l~~~LGfefFEtSaK 166 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVI---SHERGRQLADQLGFEFFETSAK 166 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceee---eHHHHHHHHHHhChHHhhhccc
Confidence 99999999999999999999999999998654 4568999999999999876532 2233334445566689999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
.+.|++.+|+.++..+.++
T Consensus 167 ~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 167 ENINVKQVFERLVDIICDK 185 (193)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.9e-33 Score=196.66 Aligned_cols=161 Identities=20% Similarity=0.326 Sum_probs=132.0
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
+...+..+||+++|++|||||||+++++.+.+ ..+.+|++..+....+ ..+.+.+|||+|++.+..++..+++++
T Consensus 7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 33448889999999999999999999988874 4567888876654433 457999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
|++|+|||++++++++.+..|+..+... ..+.|+++|+||+|+.... ..+++ ......+++|++|||++|.
T Consensus 87 ~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~ 158 (219)
T PLN03071 87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNY 158 (219)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH------HHHHhcCCEEEEcCCCCCC
Confidence 9999999999999999999999888654 3579999999999986432 12222 1123345789999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
|++++|.++++.+.+
T Consensus 159 ~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 159 NFEKPFLYLARKLAG 173 (219)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988764
No 43
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=5.5e-33 Score=186.87 Aligned_cols=156 Identities=20% Similarity=0.351 Sum_probs=127.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++..+. ...+.+|.+.....+.. ..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 699999999999999999999777 44567888776655444 4578999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
|++++++++.+..|+..+.... .++|+++|+||+|+.......+.. . ......++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQI-T----FHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHH-H----HHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999999886653 389999999999997433222211 1 12234568999999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
+++.+.+.
T Consensus 154 l~~~~~~~ 161 (166)
T cd00877 154 LARKLLGN 161 (166)
T ss_pred HHHHHHhc
Confidence 99988754
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.8e-33 Score=188.90 Aligned_cols=157 Identities=19% Similarity=0.311 Sum_probs=125.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
++||+++|++|||||||++++..+.+. .+.+|++..+ ..+... .+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 479999999999999999999977743 4556666333 234443 567789999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++.+++.+.+|+..+.......+.|+++|+||+|+.+.... ++. ..+ .+..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNL----ARQWGCAFLETSAKAKINVNEIF 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHH----HHHhCCEEEEeeCCCCCCHHHHH
Confidence 99999999999999998876555578999999999999764322 211 111 12234689999999999999999
Q ss_pred HHHHHHhh
Q 030289 170 DWLSSNVS 177 (180)
Q Consensus 170 ~~l~~~~~ 177 (180)
.++.+.+.
T Consensus 156 ~~l~~~l~ 163 (164)
T cd04175 156 YDLVRQIN 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 45
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-34 Score=179.40 Aligned_cols=162 Identities=20% Similarity=0.343 Sum_probs=135.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
..-||++++|+.|+|||+|+++|..+++. ....|+++.+. .+++ +.++++||||+|++++++..+.||+++.+++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34589999999999999999999988844 34468886654 3343 6789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|||++++++++.+..|+.+.... ..+.+.+++++||.|+.+++++.-. ....++...++.++++|+++|+|++|+
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~Vtfl---EAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFL---EASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHH---HHHhhhcccceeeeeecccccccHHHH
Confidence 999999999999999999998544 3478899999999999987654332 223555667778999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|-...+.+..+
T Consensus 163 Fl~c~~tIl~k 173 (214)
T KOG0086|consen 163 FLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHH
Confidence 99988887653
No 46
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6.3e-34 Score=199.24 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=127.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
..+||+++|++|||||||+++|..+. ..++.||++..+. .+.. ..+.+.+|||+|++.|..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 47899999999999999999999887 4466788875553 2333 457899999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCC---------HhHHHhHhCCCccCCcce-EEEEeec
Q 030289 91 VDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMS---------VSEVTDKLGLHSLRQRRW-YIQAACA 159 (180)
Q Consensus 91 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 159 (180)
||++++++++.+ ..|+..+... .++.|+++|+||+|+.+... ...+....+...++..++ .|++|||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999984 7888887654 25789999999999864210 001111222333445566 6999999
Q ss_pred cCCC-ChHHHHHHHHHHhhh
Q 030289 160 TSGQ-GLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~-~i~~~~~~l~~~~~~ 178 (180)
++|. ||+++|..++..+.+
T Consensus 170 ktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHH
Confidence 9998 899999999988755
No 47
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.2e-33 Score=188.26 Aligned_cols=157 Identities=19% Similarity=0.298 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc-eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG-FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
.+||+++|++|||||||++++..+.+ ..+.||.+ .....+..+ .+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999998874 34556665 223344444 467889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|++++++++.+..|+..+.......+.|+++|+||+|+.+...... ....+. +..+.+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQWGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HHcCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999988887654456799999999999865332211 111111 12236899999999999999999
Q ss_pred HHHHHh
Q 030289 171 WLSSNV 176 (180)
Q Consensus 171 ~l~~~~ 176 (180)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=3.4e-33 Score=188.05 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=125.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||+++|++++ ...+.+|++..+. .+.. ..+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988 4566778876543 3333 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccc----cCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 92 DSNDRERIGEAKDELHRMLSEDE----LREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
|++++++++.+..|+..+..... ....|+++|+||+|+.++. ..++.... ....+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLW-----AESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHH-----HHHcCCeEEEEECCCCCCH
Confidence 99999999999999988865432 2568999999999997422 22222211 1223467999999999999
Q ss_pred HHHHHHHHHHhh
Q 030289 166 YEGLDWLSSNVS 177 (180)
Q Consensus 166 ~~~~~~l~~~~~ 177 (180)
+++|+++.+.+.
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 49
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-32 Score=190.42 Aligned_cols=157 Identities=23% Similarity=0.338 Sum_probs=125.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+||+++|++|||||||+++|.++. ...+.+|++..+ ..+... .+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 689999999999999999999887 445678887554 334433 57899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCC--CCCHhHHHhHhCCCccCCcc-eEEEEeeccCCCC
Q 030289 91 VDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPN--AMSVSEVTDKLGLHSLRQRR-WYIQAACATSGQG 164 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 164 (180)
||++++++++.+..|+..+.... ...++|+++|+||+|+.+ ....++..+.. +..+ .+++++||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-----KENGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCceEEEEeCCCCCC
Confidence 99999999999999987765422 235789999999999973 23333332221 1223 4799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030289 165 LYEGLDWLSSNVSA 178 (180)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (180)
++++|.++.+.+.+
T Consensus 156 v~e~f~~l~~~l~~ 169 (201)
T cd04107 156 IEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 50
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=2.4e-32 Score=184.96 Aligned_cols=161 Identities=50% Similarity=0.873 Sum_probs=139.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
.+.++|+++|++|||||||++++.+.....+.+|.++....+...+..+.+||+||+..+...+..+++++|++++|+|+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~ 91 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDS 91 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeC
Confidence 44899999999999999999999988766677888888888888899999999999988888888999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
++..++.....++..+.......++|+++++||+|+.+....+++.+.++........++++++||++|+|++++|++|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 92 ADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 99888888888887776654446799999999999987666777777777665556667889999999999999999997
Q ss_pred H
Q 030289 174 S 174 (180)
Q Consensus 174 ~ 174 (180)
+
T Consensus 172 ~ 172 (173)
T cd04155 172 K 172 (173)
T ss_pred c
Confidence 6
No 51
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=6.8e-33 Score=186.35 Aligned_cols=157 Identities=20% Similarity=0.374 Sum_probs=125.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||+++|.++++ ..+.+|.+..+. ++.. ..+.+.+||+||++++...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999998884 456677775443 3333 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++++++.+..|+..+... .....|+++|+||+|+.+... .++..+. ....+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQL-----ADQLGFEFFEASAKENINVKQVF 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999999887543 234789999999999976432 2222111 12234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030289 170 DWLSSNVSAK 179 (180)
Q Consensus 170 ~~l~~~~~~~ 179 (180)
+++.+.+.++
T Consensus 156 ~~l~~~~~~~ 165 (165)
T cd01865 156 ERLVDIICDK 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999887653
No 52
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=7.2e-33 Score=188.66 Aligned_cols=159 Identities=18% Similarity=0.305 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++..+.+. .+.||++..+ ..+..+ .+.+.+||++|++++..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999988844 5778988665 345554 478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
|++++++++.+..|+..+.... ....| ++|+||+|+..+.. ...+. ......++..++++++|||++|.|++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhH-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999886542 23567 67899999864211 11111 1111222334578999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|.++.+.+.+
T Consensus 158 f~~l~~~l~~ 167 (182)
T cd04128 158 FKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 53
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=9.9e-33 Score=192.05 Aligned_cols=159 Identities=23% Similarity=0.466 Sum_probs=127.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
.+||+++|++|||||||+++|.++.+ ..+.+|++.++. .+.. ..+.+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999998874 345577775543 3433 24689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+.........|+++|+||+|+.+... .++.. .+ .+..+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAE-KL----AKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHH-HH----HHHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999887654445688999999999876332 22221 11 223447899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|+++++.+.++
T Consensus 157 ~f~~l~~~~~~~ 168 (211)
T cd04111 157 AFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 54
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.2e-32 Score=185.56 Aligned_cols=159 Identities=19% Similarity=0.363 Sum_probs=128.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..+||+++|++|+|||||++++.++. ...+.+|.+..+ ..+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999999999999887 444567777544 344443 4688999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+... ...+.|+++|+||+|+.+.. ..++.... +...+.+++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 155 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEAL-----ADEYGIKFLETSAKANINVEE 155 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999888654 23578999999999997533 22222221 122345899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|+++.+.+..+
T Consensus 156 ~~~~i~~~~~~~ 167 (167)
T cd01867 156 AFFTLAKDIKKK 167 (167)
T ss_pred HHHHHHHHHHhC
Confidence 999999998653
No 55
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=100.00 E-value=2.2e-32 Score=184.16 Aligned_cols=157 Identities=40% Similarity=0.751 Sum_probs=130.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC-------ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
||+++|++|+|||||+++|.... ...+.+|++.....+..++..+.+|||||+..+...+..++.++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 68999999999999999997532 23456788888888888999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc--cCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS--LRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|+++++++.....|+..+.......+.|+++++||+|+.+....++....+.... .....++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 99999888888888888887765556899999999999987665555554433321 2334678999999999999999
Q ss_pred HHHHHH
Q 030289 169 LDWLSS 174 (180)
Q Consensus 169 ~~~l~~ 174 (180)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999875
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=6.2e-33 Score=187.24 Aligned_cols=158 Identities=21% Similarity=0.325 Sum_probs=125.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
||+++|++|||||||++++..+.+ .++.||++..+. .+.. ..+.+.+|||||++++...+..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999874 466788876653 3333 34679999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---hHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV---SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
++++++++....|+..+.......+.|+++|+||+|+.+.... ++....+ ....+.+++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKL----AAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHH----HHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999998865543345789999999998653221 1111111 12234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030289 170 DWLSSNVSAK 179 (180)
Q Consensus 170 ~~l~~~~~~~ 179 (180)
..+++.+.+-
T Consensus 158 ~~l~~~~~~~ 167 (170)
T cd04108 158 FRVAALTFEL 167 (170)
T ss_pred HHHHHHHHHc
Confidence 9999887653
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1e-32 Score=185.21 Aligned_cols=157 Identities=19% Similarity=0.299 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee-EEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|||||||++++.++.+. .+.+|.... ...+.. ..+.+.+|||||++++...+..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999987743 344555422 223333 44788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
++++++++.+..|+..+.+.....+.|+++|+||+|+..... .++.... ....+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKEL-----ARQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHH-----HHHcCCEEEEeecCCCCCHHHHHH
Confidence 999999999999988876655455789999999999876432 2222111 122346899999999999999999
Q ss_pred HHHHHhhh
Q 030289 171 WLSSNVSA 178 (180)
Q Consensus 171 ~l~~~~~~ 178 (180)
++.+.+..
T Consensus 156 ~l~~~~~~ 163 (164)
T smart00173 156 DLVREIRK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988754
No 58
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.9e-32 Score=183.40 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=123.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
.+||+++|++|||||||+++|+++.+ ..+.+|.+..+ ..+..+ .+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999998873 45556666433 233333 456889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ...+.... ....+.+++++||++|.|++++|+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDL-----AKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHH-----HHHhCCeEEEecCCCCCCHHHHHH
Confidence 999999999999888888765445688999999999987532 22222111 122345899999999999999999
Q ss_pred HHHHHh
Q 030289 171 WLSSNV 176 (180)
Q Consensus 171 ~l~~~~ 176 (180)
++++.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04138 156 TLVREI 161 (162)
T ss_pred HHHHHh
Confidence 998765
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=7.9e-33 Score=185.64 Aligned_cols=157 Identities=18% Similarity=0.279 Sum_probs=123.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc-eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG-FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
++||+++|.+|+|||||++++..+.+ ..+.+|.+ .....+... ...+.+|||||++++..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 47999999999999999999998884 34456654 333344443 457889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|++++++++.+..|+..+.......++|+++|+||+|+.+...... ....+ ....+.+++++||+++.|++++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRAL----AEEWGCPFMETSAKSKTMVNELFA 156 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHH----HHHhCCEEEEecCCCCCCHHHHHH
Confidence 9999999999999988887654446899999999999865332211 11111 122345899999999999999999
Q ss_pred HHHHHh
Q 030289 171 WLSSNV 176 (180)
Q Consensus 171 ~l~~~~ 176 (180)
++++.+
T Consensus 157 ~l~~~l 162 (163)
T cd04176 157 EIVRQM 162 (163)
T ss_pred HHHHhc
Confidence 998765
No 60
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-33 Score=187.24 Aligned_cols=161 Identities=20% Similarity=0.375 Sum_probs=136.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
..-|||+++|++++|||-|+.||..++ ..+..+|+++.+.+... +.++.+||||+||++|+..+..||+++.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 557899999999999999999999999 55667899977765333 6688999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|||++...+++.+..|+.++..+.. +++++++|+||+||...+.+ ..+.+..++...+..|+++||.+..|++++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~lraV---~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a 167 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHLRAV---PTEDGKAFAEKEGLFFLETSALDATNVEKA 167 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhcccc---chhhhHhHHHhcCceEEEecccccccHHHH
Confidence 99999999999999999999987753 68999999999999773322 222222334445668999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|..++..+.+
T Consensus 168 F~~~l~~I~~ 177 (222)
T KOG0087|consen 168 FERVLTEIYK 177 (222)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 61
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.6e-32 Score=183.75 Aligned_cols=154 Identities=21% Similarity=0.384 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|+|||||++++..+.+ ..+.+|++..+. .+... .+.+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999998884 445778876543 44444 467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|++++++++.+..|+..+.... ..+.|+++|+||+|+....... +....+ ++..+.++++|||++|.|++++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKL----AKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHH----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999998876442 3478999999999986544321 111121 122345799999999999999999
Q ss_pred HHHHH
Q 030289 171 WLSSN 175 (180)
Q Consensus 171 ~l~~~ 175 (180)
+|.+.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99875
No 62
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.8e-32 Score=184.39 Aligned_cols=157 Identities=22% Similarity=0.402 Sum_probs=125.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+||+++|++|||||||++++.++.+ ..+.+|.+..+ ..+... .+.+.+||+||++++...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999998773 45566766443 344443 46789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
||+++++++..+..|+..+.... ..+.|+++|+||+|+...... ++.... ....+++++++||++|.|++++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEF-----ADELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHH-----HHHcCCeEEEEECCCCcCHHHH
Confidence 99999999999999998875432 357899999999998654322 222211 1223568999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|.++.+.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1e-32 Score=185.15 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
.+||+++|++|+|||||+++++++. ...+.+|.+..+. .+.. ..+.+.+|||||++++..++..+++++|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999877 3344566553322 2333 3467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++.+++.+..|+..+.......+.|+++++||+|+..... .++.. . .....+++++++||++|.|++++|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ-E----LARKLKIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH-H----HHHHcCCcEEEeeCCCCCCHHHHH
Confidence 9999999999999988887654446789999999999876432 22211 1 112234579999999999999999
Q ss_pred HHHHHHh
Q 030289 170 DWLSSNV 176 (180)
Q Consensus 170 ~~l~~~~ 176 (180)
+++++.+
T Consensus 157 ~~l~~~~ 163 (164)
T cd04145 157 HDLVRVI 163 (164)
T ss_pred HHHHHhh
Confidence 9998765
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2e-32 Score=191.26 Aligned_cols=158 Identities=20% Similarity=0.302 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+||+++|++|||||||+++|..+.+ ..+.+|.+.++. .+.. ..+.+.+|||+|++.+...+..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999998874 456788876543 3444 257899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
||++++++++.+..|+..+..... ..++|+++|+||+|+.+..... +.... ..+..+++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~----~~~~~~~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHAR----FAQANGMESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHH----HHHHcCCEEEEEECCCCCCHHH
Confidence 999999999999999888765432 2457899999999997533211 11111 1222346799999999999999
Q ss_pred HHHHHHHHhhh
Q 030289 168 GLDWLSSNVSA 178 (180)
Q Consensus 168 ~~~~l~~~~~~ 178 (180)
+|+++++.+..
T Consensus 157 lf~~l~~~l~~ 167 (215)
T cd04109 157 LFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 65
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.8e-33 Score=193.88 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=124.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
++||+++|++|||||||+++|..+. ...+.||++..+. .+.. ..+.+.+|||+|++.|..+++.+++++|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 4799999999999999999999887 4467788876553 3444 4578899999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhH--------HHhHhCCCccCCcce-EEEEeecc
Q 030289 92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS-VSE--------VTDKLGLHSLRQRRW-YIQAACAT 160 (180)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (180)
|++++++++.+. .|...+ .. ..++.|+++|+||+|+.++.. ..+ +..+.+...++..++ +|++|||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~-~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGET-QE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHH-Hh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999995 455444 32 236799999999999965321 111 111222223334554 89999999
Q ss_pred CCCC-hHHHHHHHHHHhhh
Q 030289 161 SGQG-LYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~~~-i~~~~~~l~~~~~~ 178 (180)
++.+ |+++|..++.+...
T Consensus 159 ~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 159 SSERSVRDVFHVATVASLG 177 (222)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9985 99999999987654
No 66
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.4e-32 Score=188.72 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=123.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
||+++|.+|||||||+++|..+.+. .+.+|++..+ ..+..+ .+.+.+|||||++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 6899999999999999999987743 4556766433 233333 45689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
+++++++.+..|+..+..... ..+.|+++|+||+|+.......... ........+++++++||++|.|++++|++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE---GAALARRLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH---HHHHHHHhCCEEEEecCCCCCCHHHHHHH
Confidence 999999999999887765432 3578999999999996533221111 11112234568999999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
+++.+.++
T Consensus 158 l~~~l~~~ 165 (190)
T cd04144 158 LVRALRQQ 165 (190)
T ss_pred HHHHHHHh
Confidence 99987654
No 67
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.9e-33 Score=190.79 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
.||+++|++|||||||+++|..+.+. .+.||.+..+. .+.. ..+.+.+||++|++.+..++..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 38999999999999999999988844 45677765543 2333 34789999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH---------hHhCCCccCCcc-eEEEEeeccC
Q 030289 93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT---------DKLGLHSLRQRR-WYIQAACATS 161 (180)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~ 161 (180)
++++++++.+. .|+..+... .++.|+++|+||+|+.......+.. ...+...+...+ ++|++|||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 99999999886 577777543 3579999999999997643322111 111111122223 6899999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
|.|++++|.++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 68
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=4e-32 Score=187.68 Aligned_cols=157 Identities=24% Similarity=0.391 Sum_probs=127.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..+||+++|++|||||||+++|.++.+ ..+.+|.+..+ ..+... .+.+.+||+||++.+...+..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999998874 45667877554 344443 4678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+... ....|+++|+||+|+.+.... ++.... ....+.+++++|+++|.||++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~gi~~ 157 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKF-----AGQMGISLFETSAKENINVEE 157 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEECCCCcCHHH
Confidence 99999999999999999887554 357899999999998764322 222211 122346899999999999999
Q ss_pred HHHHHHHHhhh
Q 030289 168 GLDWLSSNVSA 178 (180)
Q Consensus 168 ~~~~l~~~~~~ 178 (180)
+|+++.+.+..
T Consensus 158 lf~~l~~~~~~ 168 (199)
T cd04110 158 MFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 69
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=100.00 E-value=2e-31 Score=177.58 Aligned_cols=156 Identities=38% Similarity=0.685 Sum_probs=134.0
Q ss_pred EEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 19 ILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
|+++|++|||||||++++.+.+ ..++.||.+.....+...+..+.+||+||+..++..+..+++++|++++|+|+++++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 7999999999999999999887 556678888888777778899999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
++.....++..+.......++|+++|+||+|+.+....+++.............++++++|+++|.|++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 88888888888776544567899999999999876655555556555544455678999999999999999999875
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=8.4e-33 Score=187.23 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=120.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
++||+++|++|||||||+.++..+.+ ..+.||.+..+. .+.. ..+++.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 47999999999999999999998874 556777764332 3333 4478899999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhH--------hCCCccCCcc-eEEEEeecc
Q 030289 92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDK--------LGLHSLRQRR-WYIQAACAT 160 (180)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~ 160 (180)
|++++++++.+. .|+..+... .++.|+++|+||+|+.+.. ..+.+... .+...++..+ .++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999996 576666443 3579999999999986432 11111111 1111122233 489999999
Q ss_pred CCCChHHHHHHHHHH
Q 030289 161 SGQGLYEGLDWLSSN 175 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (180)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999875
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8.3e-32 Score=181.07 Aligned_cols=156 Identities=16% Similarity=0.241 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EE--EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VE--YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|||||||++++.++.+ ..+.||.+..+.. +. ...+.+.+|||||++++..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 7999999999999999999998874 4556666644432 22 245789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
++++++++.+..|+..+.... ..+++|+++|+||+|+.+......... .......+.++++|||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~---~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG---AACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH---HHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 999999999998877664432 236799999999999976332211110 011122346799999999999999999
Q ss_pred HHHHH
Q 030289 171 WLSSN 175 (180)
Q Consensus 171 ~l~~~ 175 (180)
+|++.
T Consensus 159 ~l~~~ 163 (165)
T cd04140 159 ELLNL 163 (165)
T ss_pred HHHhc
Confidence 99753
No 72
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-31 Score=184.23 Aligned_cols=158 Identities=23% Similarity=0.384 Sum_probs=126.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||+++|.++.+.. +.+|.+..+ ..+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999888554 677777544 33444 3467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|++++++++.+..|+..+.... ..+.|+++|+||+|+.+...... ....+ ....+++++++||++|.|++++|.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~----~~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSF----CDSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999988876542 24589999999999875432211 11111 122355899999999999999999
Q ss_pred HHHHHhhhc
Q 030289 171 WLSSNVSAK 179 (180)
Q Consensus 171 ~l~~~~~~~ 179 (180)
++.+.+.++
T Consensus 156 ~l~~~~~~~ 164 (188)
T cd04125 156 LLVKLIIKR 164 (188)
T ss_pred HHHHHHHHH
Confidence 999987653
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.1e-31 Score=180.91 Aligned_cols=158 Identities=19% Similarity=0.328 Sum_probs=125.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+||+++|++|||||||++++.++.+. .+.+|.+... ..+.. ....+.+||+||++++......+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999999999999988733 3345655443 33333 346899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
||++++.+++.+..|+..+.... .++.|+++|+||.|+.+.. ..++.... +...+++++++||+++.|++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAF-----AKEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999998886543 3679999999999987533 23332222 1233568999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|.++.+.+.++
T Consensus 158 ~~~~~~~~~~~ 168 (168)
T cd01866 158 FINTAKEIYEK 168 (168)
T ss_pred HHHHHHHHHhC
Confidence 99999988653
No 74
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.6e-31 Score=178.93 Aligned_cols=155 Identities=16% Similarity=0.293 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++..+.+. .+.+|.+.... .+.. ..+.+.+|||||++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999988743 33445543332 2222 4568899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
|++++.+++.+..|+..+... .++.|+++|+||+|+.... ..+.. .+ ....+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF----AEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH----HHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999998887543 3578999999999985421 11111 11 1223468999999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
+.+.+.++
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99987764
No 75
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.6e-31 Score=179.68 Aligned_cols=155 Identities=19% Similarity=0.381 Sum_probs=124.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+||+++|++|||||||++++.++. ...+.||.+..+. .+...+ ..+.+||+||++++...+..++++++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 4799999999999999999999887 4455677775443 344433 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+..... .++..... ...+++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHH
Confidence 99999999999999998876543 24689999999999875332 22222221 123468999999999999999
Q ss_pred HHHHHHHh
Q 030289 169 LDWLSSNV 176 (180)
Q Consensus 169 ~~~l~~~~ 176 (180)
|+++.+.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 76
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=9e-32 Score=181.72 Aligned_cols=158 Identities=22% Similarity=0.400 Sum_probs=124.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc--CeEEEEEEcCCCCCCh-hhHHhhccccCEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIR-PLWRHYFQNTHGLIF 89 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~~~~i~ 89 (180)
.+||+++|++|||||||+++++.+.+ ..+.+|.+..+. .+... .+.+.+||+||++.+. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999998874 345677765443 34443 4789999999999886 568889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccC---CCCh
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATS---GQGL 165 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i 165 (180)
|||++++++++.+..|+..+.......++|+++|+||+|+....... +....+. ...+++|++|||++ +.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i 157 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHV 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCH
Confidence 99999999999999999887665444679999999999987543321 1122221 22346899999999 8999
Q ss_pred HHHHHHHHHHhh
Q 030289 166 YEGLDWLSSNVS 177 (180)
Q Consensus 166 ~~~~~~l~~~~~ 177 (180)
+++|..+++.+.
T Consensus 158 ~~~f~~l~~~~~ 169 (170)
T cd04115 158 EAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHhh
Confidence 999999998763
No 77
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.2e-31 Score=179.75 Aligned_cols=158 Identities=16% Similarity=0.331 Sum_probs=124.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+..+||+++|++|||||||++++..+.+. .+.+|.+.... .+.. ..+.+.+||+||++++...+..+++++|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45689999999999999999999987743 45667775543 3333 4567899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcc-eEEEEeeccCCC
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRR-WYIQAACATSGQ 163 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (180)
+|||++++++++.+..|+..+..... ..++|+++|+||+|+... ...++..+.. +..+ .+++++||++|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWC-----RENGDYPYFETSAKDAT 157 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHH-----HHCCCCeEEEEECCCCC
Confidence 99999999999999999887765432 356899999999998642 2333332221 1122 379999999999
Q ss_pred ChHHHHHHHHHHh
Q 030289 164 GLYEGLDWLSSNV 176 (180)
Q Consensus 164 ~i~~~~~~l~~~~ 176 (180)
|++++|+++++.+
T Consensus 158 ~v~~~~~~~~~~~ 170 (170)
T cd04116 158 NVAAAFEEAVRRV 170 (170)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 78
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.5e-31 Score=186.84 Aligned_cols=160 Identities=21% Similarity=0.366 Sum_probs=129.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+++|++|||||||+++|.++.+ ..+.+|++..+. .+..+ .+.+.+||++|++++...+..+++++++++
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998884 456688876553 44443 468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+....... +....+. ...+++++++||++|.|+++
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999988875542 3579999999999986544322 1222222 23457899999999999999
Q ss_pred HHHHHHHHhhh
Q 030289 168 GLDWLSSNVSA 178 (180)
Q Consensus 168 ~~~~l~~~~~~ 178 (180)
+|+++++.+.+
T Consensus 165 lf~~l~~~i~~ 175 (216)
T PLN03110 165 AFQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 79
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=5.4e-32 Score=180.45 Aligned_cols=152 Identities=16% Similarity=0.247 Sum_probs=114.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcccc-ccccceeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~-~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
+||+++|++|||||||++++..+.+... .|+.+.....+..++ +.+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 5899999999999999999988774443 344443344555555 6799999999974 3466889999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC--CCCHhHHHhHhCCCccCC-cceEEEEeeccCCCChHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN--AMSVSEVTDKLGLHSLRQ-RRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
+++++++.+..|+..+.......+.|+++|+||+|+.. ..... ...+...++. ..+.|++|||++|.||+++|.
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~---~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID---DARARQLCADMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC---HHHHHHHHHHhCCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999887654446789999999999843 12111 1111111222 246899999999999999999
Q ss_pred HHHHHh
Q 030289 171 WLSSNV 176 (180)
Q Consensus 171 ~l~~~~ 176 (180)
.+++.+
T Consensus 153 ~~~~~~ 158 (158)
T cd04103 153 EAAQKI 158 (158)
T ss_pred HHHhhC
Confidence 998653
No 80
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1e-31 Score=180.01 Aligned_cols=152 Identities=17% Similarity=0.345 Sum_probs=121.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE--EEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET--VEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
+||+++|++|+|||||++++..+.+ ..+.+|.+..+.. +.. ..+++.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999998874 3456777765533 333 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+... ..++|+++|+||+|+..+.. .++.... ....+++++++|+++|.|+++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 153 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEAL-----AKRLQLPLFRTSVKDDFNVTE 153 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999998887543 35799999999999876433 2222211 122345899999999999999
Q ss_pred HHHHHHHH
Q 030289 168 GLDWLSSN 175 (180)
Q Consensus 168 ~~~~l~~~ 175 (180)
+|+++.+.
T Consensus 154 l~~~l~~~ 161 (162)
T cd04106 154 LFEYLAEK 161 (162)
T ss_pred HHHHHHHh
Confidence 99999865
No 81
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.3e-31 Score=185.53 Aligned_cols=161 Identities=21% Similarity=0.386 Sum_probs=125.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
....+||+|+|++|||||||+++|.++.+..+.+|.+..+. .+..+ .+.+.+|||||++++...+..+++++|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 35579999999999999999999998887677778776543 34443 468899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhc-ccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 89 FVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
+|||++++++++.+..++...+. .....+.|+++|+||+|+...... ++... .....+++|+++||+++.|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-----~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-----LAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-----HHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999764433332 222346799999999998754332 22111 11233567999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030289 166 YEGLDWLSSNVSA 178 (180)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (180)
+++|+++.+.+.+
T Consensus 166 ~~l~~~l~~~~~~ 178 (211)
T PLN03118 166 EQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 82
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.8e-31 Score=183.36 Aligned_cols=157 Identities=18% Similarity=0.427 Sum_probs=125.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc--ccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+||+++|++|||||||++++..+.+. .+.+|.+..+. .+.. ..+.+.+|||||++++...+..+++++|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988743 45677765443 2444 347899999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
||++++++++.+..|+..+... ...++|+++|+||+|+..+. ..++.. .+. ...+.+++++||++|.|++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~l~----~~~~~~~~e~Sa~~~~~v~~l 154 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGE-RLA----KEYGVPFMETSAKTGLNVELA 154 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999998887654 23478999999999996432 222222 211 223468999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|.++.+.+.++
T Consensus 155 ~~~l~~~~~~~ 165 (191)
T cd04112 155 FTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 83
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.9e-32 Score=182.66 Aligned_cols=154 Identities=27% Similarity=0.433 Sum_probs=126.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEE--EE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETV--EY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
||+++|++|||||||+++|.++. ...+.+|.+...... .. ..+.+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999888 455667876655443 33 45779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
++++++++.+..|+..+..... .+.|+++++||+|+.+. ...++... .++..+.+|++||++++.||+++|.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~~~f~ 154 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQE-----FAKELGVPYFEVSAKNGENVKEIFQ 154 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHH-----HHHHTTSEEEEEBTTTTTTHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHH-----HHHHhCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999998876543 46899999999998763 23333221 1223346899999999999999999
Q ss_pred HHHHHhh
Q 030289 171 WLSSNVS 177 (180)
Q Consensus 171 ~l~~~~~ 177 (180)
.+++.+.
T Consensus 155 ~~i~~i~ 161 (162)
T PF00071_consen 155 ELIRKIL 161 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999875
No 84
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.8e-31 Score=183.64 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=122.8
Q ss_pred EcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289 22 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 22 ~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (180)
+|++|||||||+++++.+.+. .+.+|++..+....+ ..+.+.+|||+|++++..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999988754 567888876654433 468999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
.+++.+..|+..+.... .++|+++|+||+|+.... ..+.. ......++.|++|||++|.||+++|.++++.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~------~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI------TFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH------HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999886542 579999999999986422 11111 1223446789999999999999999999988
Q ss_pred hhh
Q 030289 176 VSA 178 (180)
Q Consensus 176 ~~~ 178 (180)
+.+
T Consensus 153 i~~ 155 (200)
T smart00176 153 LIG 155 (200)
T ss_pred HHh
Confidence 764
No 85
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.4e-31 Score=178.11 Aligned_cols=154 Identities=19% Similarity=0.373 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++.++.+ ..+.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 6899999999999999999998873 444556654443 3333 3467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++++++.+..|+..+... ..++.|+++|+||+|+..... .++..... ...+..++++||+++.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999998876433 246899999999999875332 22222211 1234689999999999999999
Q ss_pred HHHHHHh
Q 030289 170 DWLSSNV 176 (180)
Q Consensus 170 ~~l~~~~ 176 (180)
+++++.+
T Consensus 155 ~~~~~~~ 161 (161)
T cd04113 155 LKCARSI 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 86
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=168.06 Aligned_cols=171 Identities=32% Similarity=0.628 Sum_probs=159.1
Q ss_pred HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
+.+.+-..++.+.++|..++|||||+|....+. .....||+|++...++-.+..+.+||.||++.++..|+.|++.+++
T Consensus 12 i~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~a 91 (186)
T KOG0075|consen 12 ICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSA 91 (186)
T ss_pred HHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcE
Confidence 356666779999999999999999999999877 5556799999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
++||+|+.+++.++.....+++++..+...++|+++.+||.|++.+.+..++....++....++.+.+|.+|+++..||+
T Consensus 92 ivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 92 IVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 99999999999999999999999998888899999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
-+.+|+++....
T Consensus 172 ~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 172 ITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHhhh
Confidence 999999987643
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.98 E-value=3.7e-31 Score=177.56 Aligned_cols=157 Identities=22% Similarity=0.437 Sum_probs=125.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++.+.. ...+.++.+..+. .+...+ ..+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 689999999999999999999877 3444566665443 344433 68899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++.+++.+..|+..+..... +++|+++|+||+|+.... ..+.... + .+..+++++++|+.+|.|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~~l~ 154 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-F----AEEHGLPFFETSAKTNTNVEEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999888765432 579999999999987632 2222222 1 12345679999999999999999
Q ss_pred HHHHHHhhhc
Q 030289 170 DWLSSNVSAK 179 (180)
Q Consensus 170 ~~l~~~~~~~ 179 (180)
+++.+.+.++
T Consensus 155 ~~i~~~~~~~ 164 (164)
T smart00175 155 EELAREILKR 164 (164)
T ss_pred HHHHHHHhhC
Confidence 9999988764
No 88
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=2e-31 Score=183.54 Aligned_cols=160 Identities=16% Similarity=0.239 Sum_probs=123.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc--ccccccceeEE--EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+||+|+|++|+|||||+++|..+.+. .+.+|++..+. .+... .+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 48999999999999999999988854 46778775442 34443 46778999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
||++++.+++.+..|+..+... ..+.|+++|+||+|+.+... ..++............+++++++||+++.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999998898887553 34789999999999864221 10110000011122335679999999999999999
Q ss_pred HHHHHHhhh
Q 030289 170 DWLSSNVSA 178 (180)
Q Consensus 170 ~~l~~~~~~ 178 (180)
+++.+.+.+
T Consensus 159 ~~i~~~~~~ 167 (193)
T cd04118 159 QKVAEDFVS 167 (193)
T ss_pred HHHHHHHHH
Confidence 999988755
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.98 E-value=4.3e-31 Score=177.15 Aligned_cols=155 Identities=21% Similarity=0.402 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
++||+++|++|||||||+|++.++.+.. +.+|.+..+ ..+.. ..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988554 667776433 34444 457899999999999998999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|++++++++....|+..+..... +..|+++++||+|+.+.. ..++.... ....+.+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEY-----ADENGLLFFETSAKTGENVNEL 154 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHH
Confidence 999999999999999998866533 679999999999987432 23222221 1122367999999999999999
Q ss_pred HHHHHHHh
Q 030289 169 LDWLSSNV 176 (180)
Q Consensus 169 ~~~l~~~~ 176 (180)
++++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd01860 155 FTEIAKKL 162 (163)
T ss_pred HHHHHHHh
Confidence 99999876
No 90
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=3.1e-31 Score=178.23 Aligned_cols=156 Identities=22% Similarity=0.394 Sum_probs=122.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..+||+++|++|+|||||++++..+.+. ++.+|.+.. ...+...+ +.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999987743 445666543 34555544 688999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcc-eEEEEeeccCCCChH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRR-WYIQAACATSGQGLY 166 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 166 (180)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+..... ..+.... .+..+ ..++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTL-----AEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCcEEEEEECCCCCCHH
Confidence 999999999999999998886532 35789999999999875432 2222111 11122 368999999999999
Q ss_pred HHHHHHHHHh
Q 030289 167 EGLDWLSSNV 176 (180)
Q Consensus 167 ~~~~~l~~~~ 176 (180)
++|+++.+.+
T Consensus 156 ~~~~~l~~~l 165 (165)
T cd01864 156 EAFLLMATEL 165 (165)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 91
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=2.9e-31 Score=178.90 Aligned_cols=157 Identities=16% Similarity=0.255 Sum_probs=124.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
.+||+++|++|||||||++++.++.+ .++.+|.+..+ ..+.. ..+.+.+|||||++.+..+++.+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 47999999999999999999998884 44566666333 33333 3468899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcc-eEEEEeeccCCCChHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEG 168 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 168 (180)
|++++++++....|...+.......+.|+++++||+|+.+... .++... + .+..+ ++++++||+++.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~----~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-L----SQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-H----HHHcCCceEEEeeCCCCCCHHHH
Confidence 9999999999999888876544446899999999999865432 222111 1 11222 68999999999999999
Q ss_pred HHHHHHHhh
Q 030289 169 LDWLSSNVS 177 (180)
Q Consensus 169 ~~~l~~~~~ 177 (180)
|++++..+.
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998653
No 92
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=3.9e-32 Score=171.02 Aligned_cols=158 Identities=22% Similarity=0.358 Sum_probs=130.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
-++.+|+|++|+|||+|+.+|..+. ..+|..|+|.++ .++.+ +.++++|||++|+++++.++..|+++.+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 3678899999999999999999887 445666777554 45554 678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
||+++.++|.....|++.+.+. -.++|-++|+||+|+++..-++.. ....++.+.++.+|++|+++++|++..|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~---dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTE---DARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehH---HHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999654 358899999999999875433221 11233455678899999999999999999
Q ss_pred HHHHHhhh
Q 030289 171 WLSSNVSA 178 (180)
Q Consensus 171 ~l~~~~~~ 178 (180)
.|.++..+
T Consensus 163 cit~qvl~ 170 (198)
T KOG0079|consen 163 CITKQVLQ 170 (198)
T ss_pred HHHHHHHH
Confidence 99887654
No 93
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.8e-32 Score=175.29 Aligned_cols=162 Identities=20% Similarity=0.409 Sum_probs=133.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..+|+.++||++-+|||+|++.|..+++.+ ..||+|+++. -+.. ..+++++|||+|++++++.++.||+++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 457999999999999999999999988443 4688887653 2333 457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccC-CCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELR-EAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
++|||++|.++++-...|+++.......+ ++.+.+|++|+|+...+.+. .+.+...+..++..|+++|+++|.||+
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt---~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT---AEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc---HHHHHHHHHhcCceEEEecccCCCcHH
Confidence 99999999999999999999987765534 45568999999998765432 222233445678889999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
|.|..+.+.+..
T Consensus 163 EAF~mlaqeIf~ 174 (213)
T KOG0091|consen 163 EAFDMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 94
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=6.3e-31 Score=176.52 Aligned_cols=154 Identities=18% Similarity=0.294 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC--C-ccccccccceeEE--EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG--E-IVTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~--~-~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+||+++|++|||||||++++..+ . ..++.+|.+..+. .+.. ..+++.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 3 4566678775543 2322 4589999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHH-HhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV-TDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+.+....... ...+. ...+.+++++||+++.|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~ 154 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEE 154 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHH
Confidence 9999999999999999988876542 56899999999999664332221 11111 12345799999999999999
Q ss_pred HHHHHHHHh
Q 030289 168 GLDWLSSNV 176 (180)
Q Consensus 168 ~~~~l~~~~ 176 (180)
+|+.+.+.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04101 155 PFESLARAF 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
No 95
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=2.8e-31 Score=181.92 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=121.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|+|||||+++|.++.+ ..+.+|++..+. .+.. ..+.+.+|||||++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 4899999999999999999998884 455667665443 2333 3568999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcce-EEEEeeccCCCChHHH
Q 030289 92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRW-YIQAACATSGQGLYEG 168 (180)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~ 168 (180)
|++++++++.+. .|+..+... .++.|+++|+||+|+....... .+........+...++ ++++|||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 999999999986 476665432 3578999999999986532100 0000111111222334 7999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|..+.+.+..
T Consensus 159 f~~l~~~~~~ 168 (187)
T cd04132 159 FDTAIEEALK 168 (187)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 96
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.98 E-value=7.9e-31 Score=175.53 Aligned_cols=154 Identities=20% Similarity=0.385 Sum_probs=121.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||+++|.+..+ ..+.++.+..+ ..+..++ +.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999998873 34456665443 3444433 67999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++++++.+..|+..+.... ..+.|+++++||+|+.+... .++.... ....+++++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKK-----AKELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHH-----HHHhCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999876543 23699999999999954322 2222211 12234689999999999999999
Q ss_pred HHHHHHh
Q 030289 170 DWLSSNV 176 (180)
Q Consensus 170 ~~l~~~~ 176 (180)
+++.+.+
T Consensus 155 ~~i~~~l 161 (161)
T cd01861 155 RKIASAL 161 (161)
T ss_pred HHHHHhC
Confidence 9998753
No 97
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=2.2e-30 Score=183.62 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=124.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccc-eeEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG-FNVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~-~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|||||||+++|+.+.+. .+.+|++ .....+.+. .+.+.+|||+|++.+...+..++.++|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999988754 5567775 333444544 4788999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHhccc--------ccCCCeEEEEEecCCCCC--CCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 93 SNDRERIGEAKDELHRMLSED--------ELREAVLLVFANKQDLPN--AMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiiv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
++++++++.+..|+..+.... ...+.|+++|+||+|+.. +...+++.+..+. ...+.++++||++|
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg 156 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKN 156 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCC
Confidence 999999999999988886431 235789999999999974 3344444443332 12457999999999
Q ss_pred CChHHHHHHHHHHh
Q 030289 163 QGLYEGLDWLSSNV 176 (180)
Q Consensus 163 ~~i~~~~~~l~~~~ 176 (180)
.|++++|+++.+..
T Consensus 157 ~gI~elf~~L~~~~ 170 (247)
T cd04143 157 SNLDEMFRALFSLA 170 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999865
No 98
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.4e-30 Score=175.58 Aligned_cols=156 Identities=21% Similarity=0.193 Sum_probs=124.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc--cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
++.+||+++|++|||||||++++.++.+ .++.||++..+ ..+...+ ..+.+||++|++.+...+..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 6789999999999999999999998885 46778887544 3444444 6789999999999988899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-----HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-----VSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
++|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.+... .+++...++.. .++++||+++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~ 151 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLG 151 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccC
Confidence 999999999999988888876532 24789999999999865321 22333222211 3589999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
.|++++|+.+.+.+...
T Consensus 152 ~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 152 DSSNELFTKLATAAQYP 168 (169)
T ss_pred ccHHHHHHHHHHHhhCC
Confidence 99999999999987653
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.1e-30 Score=175.20 Aligned_cols=157 Identities=20% Similarity=0.307 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|||||||++++....+. .+.++.+..+.. ... ..+.+.+||+||+..+...+..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 69999999999999999999987743 444555433322 222 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
+++++++.....|+..+.......+.|+++|+||+|+... ...++.... ....+.+++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANL-----ARQWGVPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHH-----HHHhCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999999998887654568999999999999762 222221111 112345899999999999999999
Q ss_pred HHHHHhhh
Q 030289 171 WLSSNVSA 178 (180)
Q Consensus 171 ~l~~~~~~ 178 (180)
++.+.+.+
T Consensus 156 ~l~~~~~~ 163 (164)
T cd04139 156 DLVREIRQ 163 (164)
T ss_pred HHHHHHHh
Confidence 99988765
No 100
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=6.8e-31 Score=181.02 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChh--------hHHhhccc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRP--------LWRHYFQN 83 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~--------~~~~~~~~ 83 (180)
+||+++|.+|||||||++++.++.+ ..+.||++... ..+..++ +.+.+|||||...+.. ....++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999998874 44667776432 3344444 6788999999765421 13345789
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeecc
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
+|++++|||++++++++.+..|+..+.... ...++|+++|+||+|+....... +....+. .+..+++|++|||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLV---RKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHH---HHhcCCcEEEecCC
Confidence 999999999999999999999988876543 24679999999999996532211 1111111 11235689999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
+|.||+++|+.+++.+..+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 158 YNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCHHHHHHHHHHHhhcc
Confidence 9999999999999887654
No 101
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.97 E-value=2.2e-31 Score=180.42 Aligned_cols=158 Identities=19% Similarity=0.235 Sum_probs=119.6
Q ss_pred EEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289 19 ILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
|+|+|++|||||||++++..+.+ ..+.+|....+. .+.. ..+.+.+|||||++.+...+..+++++|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999998884 445566554332 3333 3467999999999999999999999999999999999
Q ss_pred ChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHH--------hHhCCCccCCcce-EEEEeeccCCC
Q 030289 95 DRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVT--------DKLGLHSLRQRRW-YIQAACATSGQ 163 (180)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~--------~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (180)
++++++.+. .|+..+... .++.|+++|+||+|+.++.. ..++. .......++..+. ++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999986 577776543 35899999999999875321 11111 0111112223343 79999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
|++++|+.+++.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988754
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=181.17 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=126.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+++|++|+|||||+++|....+ ..+.+|++..+. .+.. ..+.+.+|||+|++.+...+..+++++|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3569999999999999999999998873 345567775543 3444 3467899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++++++.+..|+..+.... .++.|+++|+||+|+.+.. ..++.... ++..+++++++||+++.|++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQF-----AKEHGLIFMEASAKTAQNVE 157 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999988765432 3578999999999987633 22222222 22345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++|.++++.+.+
T Consensus 158 e~f~~l~~~~~~ 169 (210)
T PLN03108 158 EAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 103
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.3e-30 Score=171.98 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=123.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++.+..+ ..+.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999998874 345666665443 3333 3478999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|++++.+++.+..|+..+.......+.|+++|+||+|+.... ..++.... ....+++++++|+++|.|++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKF-----ARKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHH-----HHHcCCEEEEEecCCCCCHHHHHH
Confidence 999999999999998877665555689999999999997432 23222221 122456899999999999999999
Q ss_pred HHHHHh
Q 030289 171 WLSSNV 176 (180)
Q Consensus 171 ~l~~~~ 176 (180)
++.+.+
T Consensus 156 ~~~~~~ 161 (161)
T cd01863 156 ELVEKI 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 104
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=5.1e-30 Score=173.28 Aligned_cols=158 Identities=16% Similarity=0.271 Sum_probs=122.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++.+.. ...+.+|.+..+ ..+.. ..+.+.+||+||++.+...+..+++++|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 589999999999999999999887 334445665443 23334 3467889999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCc-ceEEEEeeccCCCCh
Q 030289 92 DSNDRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQR-RWYIQAACATSGQGL 165 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 165 (180)
|++++++++....|...+..... ..++|+++|+||+|+..+. ..++...... .. ..+++++|+++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ-----SNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCceEEEEECCCCCCH
Confidence 99999999888888776654322 3479999999999997422 2333222211 12 258999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++++++.+.+.++
T Consensus 156 ~~l~~~i~~~~~~~ 169 (172)
T cd01862 156 EQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 105
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.9e-31 Score=182.27 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCChHHHHH-HhhcCC------ccccccccce-e-EE-----------EEEEcCeEEEEEEcCCCCCChh
Q 030289 16 EMRILMVGLDAAGKTTILY-KLKLGE------IVTTIPTIGF-N-VE-----------TVEYKNVSFTVWDVGGQDKIRP 75 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~-~l~~~~------~~~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~~ 75 (180)
.+||+++|+.|||||||+. ++.++. ...+.||++. . +. .+....+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5799999999999999996 555432 2345678752 1 11 2233568899999999875 3
Q ss_pred hHHhhccccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCC----------------HhHH
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMS----------------VSEV 138 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----------------~~~~ 138 (180)
....+++++|++++|||++++.+++.+. .|+..+... .++.|+++|+||+|+..... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 4567899999999999999999999997 587776443 25789999999999864210 0112
Q ss_pred HhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 139 TDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
....+...++..+++|++|||++|.||+++|+.++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 2222333445567799999999999999999999875
No 106
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-31 Score=168.41 Aligned_cols=158 Identities=22% Similarity=0.362 Sum_probs=130.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
-|||+++|..|+|||+|+.+|..+- ++...+|+++.+ .++.+ ++++++||||+|++++++.+..|++.+|+++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 4899999999999999999999887 444557877554 44444 778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
||++-..+|+.+..|+.++-... ..++--++|+||.|+.+.+++ ....+..+...+...|.++||++-+|++.+|.
T Consensus 87 ydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrev---p~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREV---PQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhh---hHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999886543 356778999999999876432 33334444444566899999999999999999
Q ss_pred HHHHHhh
Q 030289 171 WLSSNVS 177 (180)
Q Consensus 171 ~l~~~~~ 177 (180)
.+.-.+.
T Consensus 163 ~~a~rli 169 (213)
T KOG0095|consen 163 DLACRLI 169 (213)
T ss_pred HHHHHHH
Confidence 9877654
No 107
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=4.5e-30 Score=171.82 Aligned_cols=154 Identities=21% Similarity=0.343 Sum_probs=120.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee--EEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|+|||||+++|+.+... .+.++.... ...+.. ....+.+||+||++.+...++.+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 68999999999999999999988743 333444332 233433 3467999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++++++.+..|+..+..... .++|+++++||+|+..... .+++... ....+.+++++|++++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gi~~~~ 154 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEY-----AKSVGAKHFETSAKTGKGIEELF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999887765433 3789999999999875332 2222221 12235678999999999999999
Q ss_pred HHHHHHh
Q 030289 170 DWLSSNV 176 (180)
Q Consensus 170 ~~l~~~~ 176 (180)
+++.+.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04123 155 LSLAKRM 161 (162)
T ss_pred HHHHHHh
Confidence 9998875
No 108
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.6e-30 Score=174.82 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=116.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCc-ccccccccee-EEEEEE--cCeEEEEEEcCCCCCC-hhhHHhhccccCEEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN-VETVEY--KNVSFTVWDVGGQDKI-RPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~-~~~~~~--~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d 92 (180)
||+++|++|||||||+++++.+.+ ..+.+|.... ...+.. ..+.+.+||+||+..+ ......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999998764 3445555422 223333 4567899999998853 4457778999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccc-cCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC-CChHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDE-LREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG-QGLYEG 168 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~ 168 (180)
++++++++.+..|+..+..... ..+.|+++|+||+|+.+... .++.. .+ .+..+.+|+++||+++ .|++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sa~~~~~~v~~~ 155 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGE-KL----ASELGCLFFEVSAAEDYDGVHSV 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHH-HH----HHHcCCEEEEeCCCCCchhHHHH
Confidence 9999999999988877765432 45799999999999865332 22211 11 1223468999999999 499999
Q ss_pred HHHHHHHhh
Q 030289 169 LDWLSSNVS 177 (180)
Q Consensus 169 ~~~l~~~~~ 177 (180)
|..+++.+.
T Consensus 156 f~~l~~~~~ 164 (165)
T cd04146 156 FHELCREVR 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998765
No 109
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=4.7e-30 Score=179.76 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=119.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc--cccccccc--eeEEEEEE--cCeEEEEEEcCCCCCChhhHHhhcc-ccCEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIG--FNVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQ-NTHGLIF 89 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~~i~ 89 (180)
+||+++|++|||||||+++|..+.+ ..+.++.+ ....++.+ ....+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 6899999999999999999987775 45556653 44444554 55789999999998 334455666 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++.+++....|+..+.......++|+++|+||+|+.+.... ++.. .+ +...+++++++||+++.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR-AC----AVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH-HH----HHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999888766543467999999999998664322 2111 11 223356799999999999999
Q ss_pred HHHHHHHHhhh
Q 030289 168 GLDWLSSNVSA 178 (180)
Q Consensus 168 ~~~~l~~~~~~ 178 (180)
+|+++++.+..
T Consensus 154 l~~~l~~~~~~ 164 (221)
T cd04148 154 LLEGIVRQIRL 164 (221)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 110
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.6e-30 Score=176.14 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=117.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|+|||||++++..+.+. .+.+|....+ ..+... .+.+.+|||||++.+...+..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999988844 4456654222 234443 4568899999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH---------hHhCCCccCCcc-eEEEEeeccC
Q 030289 93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT---------DKLGLHSLRQRR-WYIQAACATS 161 (180)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~Sa~~ 161 (180)
++++++++.+. .|+..+... .++.|+++|+||+|+.+........ ...+...++..+ .++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999886 465555433 4689999999999986532211100 001111112233 3799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030289 162 GQGLYEGLDWLSSNV 176 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (180)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 111
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.9e-30 Score=175.67 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccce-eEEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF-NVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~-~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|+|||||++++..+.+ .++.+|..- ....+.. ..+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 5899999999999999999988774 345555431 1123333 34688999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCH---------hHHHhHhCCCccCCcce-EEEEeeccC
Q 030289 93 SNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSV---------SEVTDKLGLHSLRQRRW-YIQAACATS 161 (180)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (180)
++++++++.+. .|+..+... .++.|+++++||+|+.+.... ..+........++..+. .|++|||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999885 577666533 357899999999998643210 00000111111223344 899999999
Q ss_pred CCChHHHHHHHHH
Q 030289 162 GQGLYEGLDWLSS 174 (180)
Q Consensus 162 ~~~i~~~~~~l~~ 174 (180)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=5.2e-30 Score=172.45 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=116.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeE-E--EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-E--TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~-~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
.||+++|++|||||||+++|..+.+....++..... . .+....+++.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 489999999999999999999888544444332221 1 2223567899999999998888888888999999999999
Q ss_pred CChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh---HHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 94 NDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
+++++++.+. .|+..+... . .+.|+++|+||+|+.+..... +...... .... ...++++|||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~-~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIM-NEFR-EIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccccchhHHHHHHHHHH-HHHh-cccEEEEeccccccCHHHHH
Confidence 9999999986 455555332 2 478999999999997654321 1111100 0000 01279999999999999999
Q ss_pred HHHHHHhhh
Q 030289 170 DWLSSNVSA 178 (180)
Q Consensus 170 ~~l~~~~~~ 178 (180)
+.+.+.+..
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988754
No 113
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.8e-29 Score=173.36 Aligned_cols=156 Identities=15% Similarity=0.221 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccc-cccccc-eeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
||+++|++|||||||+++|+.+.+.. +.+|.. .....+...+ +.+.+||+||+..+..++..++.++|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999887443 445543 3334455544 6889999999999998889999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
+++++++.+..|+..+.......++|+++|+||+|+.+. .. .++..+... ...+.+++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHH
Confidence 999999999999888876654467999999999998652 21 112111111 12235789999999999999999
Q ss_pred HHHHHhh
Q 030289 171 WLSSNVS 177 (180)
Q Consensus 171 ~l~~~~~ 177 (180)
++.+.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9998764
No 114
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-31 Score=170.40 Aligned_cols=160 Identities=20% Similarity=0.380 Sum_probs=132.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE-------------cCeEEEEEEcCCCCCChhhHHhhcc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY-------------KNVSFTVWDVGGQDKIRPLWRHYFQ 82 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~~~~~~~ 82 (180)
+|.+.+|++|+||||++.+...+++. ....|+++++....+ ..+.+++|||+|++++++++-.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 56788999999999999999988844 445688876654333 2368999999999999999999999
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
++=+++++||++++.+|-....|+.++..+.--.+..+++++||+|+.+.+.+.+ ......+.++++|||++||-+|
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~---~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSE---DQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhH---HHHHHHHHHhCCCeeeeccccC
Confidence 9999999999999999999999999998777666788999999999987654332 2222344667889999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
.||++..+.+.+.+.++
T Consensus 167 ~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKR 183 (219)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999888876543
No 115
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.6e-30 Score=160.49 Aligned_cols=173 Identities=55% Similarity=0.926 Sum_probs=159.4
Q ss_pred Hhhhccc-CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 8 LKMLFAR-KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 8 ~~~~~~~-~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
++..+.. +..+|.++|.-|+||+|+..++.-++..+..||++++..++.+++.++++||..|+...+..|+.|+.+.|+
T Consensus 9 f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~a 88 (182)
T KOG0072|consen 9 FKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDA 88 (182)
T ss_pred HHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccce
Confidence 3444443 899999999999999999999998898899999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||+|.+|.+.+......+..++...+.++..+++++||.|........+....++++.++++-+.+|++||.+|+|++
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 99999999999998888888888887777888899999999998888888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC
Q 030289 167 EGLDWLSSNVSAKG 180 (180)
Q Consensus 167 ~~~~~l~~~~~~~~ 180 (180)
+.++|+.+.+.+++
T Consensus 169 ~~~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 169 PAMDWLQRPLKSRQ 182 (182)
T ss_pred HHHHHHHHHHhccC
Confidence 99999999998764
No 116
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=4.2e-29 Score=169.37 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=117.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+.||+++|++|||||||++++..+.+. .+.||.+..+ ..+.. ..+.+.+|||||++.+...+..++.++|++++||
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 468999999999999999999988744 4567766443 33444 4467899999999999888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhH--------hCCCccCCcc-eEEEEeecc
Q 030289 92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDK--------LGLHSLRQRR-WYIQAACAT 160 (180)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~--------~~~~~~~~~~-~~~~~~Sa~ 160 (180)
|++++++++.+. .|+..+... ..+.|+++|+||+|+.+..... ++... .+.......+ .++++|||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 999999998886 466655432 3578999999999986532211 11100 0000111122 379999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030289 161 SGQGLYEGLDWLSSNV 176 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (180)
+|.|++++|.++.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 117
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=7.4e-29 Score=165.10 Aligned_cols=152 Identities=24% Similarity=0.423 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccc-cccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||++++.+..... +.+|.+..+..... ....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 589999999999999999999888444 46777766554433 3578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC--CCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP--NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++++++.+..|+..+.... ....|+++++||+|+. .....++..+... ..+.+++++|++++.|+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELF 154 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHH
Confidence 9999999999999988876553 2578999999999996 2223333332211 245689999999999999999
Q ss_pred HHHHH
Q 030289 170 DWLSS 174 (180)
Q Consensus 170 ~~l~~ 174 (180)
+++.+
T Consensus 155 ~~i~~ 159 (159)
T cd00154 155 QSLAE 159 (159)
T ss_pred HHHhC
Confidence 99863
No 118
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=5e-29 Score=169.75 Aligned_cols=157 Identities=20% Similarity=0.297 Sum_probs=124.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee-EEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-VETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
.||+++|++|||||||++++....+. .+.||.... ...+... ++.+.+||+||+.++...+..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 68999999999999999999988743 355665532 3344444 4567999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
+++..+++.+..|+..+.+.....+.|+++|+||+|+..... .++.... ....+.+++++|++++.|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKEL-----AESWGAAFLESSARENENVEEAFE 156 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999988888765556789999999999875322 2222111 112336899999999999999999
Q ss_pred HHHHHhhh
Q 030289 171 WLSSNVSA 178 (180)
Q Consensus 171 ~l~~~~~~ 178 (180)
++.+.+..
T Consensus 157 ~l~~~~~~ 164 (180)
T cd04137 157 LLIEEIEK 164 (180)
T ss_pred HHHHHHHH
Confidence 99988764
No 119
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.6e-29 Score=167.19 Aligned_cols=157 Identities=21% Similarity=0.361 Sum_probs=121.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccce--eEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGF--NVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..+||+++|++|||||||++++..+.. ..+.+|++. ....+...+ +.+.+||+||++.+...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999987663 344566653 333445544 678999999999999888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
|+|++++++++.+..|+..+... ...+.|+++|+||+|+.+..... +....+. +....+++++|+++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999888888766433 23468999999999987543322 2222211 112357999999999999999
Q ss_pred HHHHHHHh
Q 030289 169 LDWLSSNV 176 (180)
Q Consensus 169 ~~~l~~~~ 176 (180)
|+++.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99999865
No 120
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.1e-29 Score=170.18 Aligned_cols=156 Identities=21% Similarity=0.276 Sum_probs=115.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEE--EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVE--YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
+||+++|++|||||||+++|.++.. ..+.+|...... .+. ...+.+.+||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 6899999999999999999998884 444555442222 222 245689999999999988888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCCCCCCCHhH--------HHhHhCCCccCCcce-EEEEeeccCC
Q 030289 93 SNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDLPNAMSVSE--------VTDKLGLHSLRQRRW-YIQAACATSG 162 (180)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (180)
++++.++..... |+..+... ..+.|+++|+||+|+........ +............+. +++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999988877764 55544433 24799999999999876543211 111111112222333 8999999999
Q ss_pred CChHHHHHHHHH
Q 030289 163 QGLYEGLDWLSS 174 (180)
Q Consensus 163 ~~i~~~~~~l~~ 174 (180)
.|+++++.++++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999876
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=3.1e-29 Score=167.41 Aligned_cols=154 Identities=20% Similarity=0.301 Sum_probs=120.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC-ccccccccce-eEEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGF-NVETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~-~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
||+++|++|||||||++++++.. ...+.++.+. ....+... .+.+.+||+||+..+...+..+++++|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999776 3444555552 22334444 57889999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
++++++.....|+..+.........|+++|+||+|+..... .++.... ....+.+++++|++++.|+++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKAL-----AKEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHH
Confidence 99999999999988887664445799999999999876322 2222211 1222368999999999999999999
Q ss_pred HHHHh
Q 030289 172 LSSNV 176 (180)
Q Consensus 172 l~~~~ 176 (180)
|.+.+
T Consensus 156 l~~~i 160 (160)
T cd00876 156 LVREI 160 (160)
T ss_pred HHhhC
Confidence 98753
No 122
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3e-28 Score=170.31 Aligned_cols=161 Identities=21% Similarity=0.348 Sum_probs=130.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.+...+||+++|++|||||||++++..+. ...+.+|.+..+..... +.+.+.+||++|++.+...+..++.++++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~ 84 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC 84 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence 35678999999999999999999888777 45677888877665443 56899999999999999899999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+++|||++++.++..+..|+..+.... .++|+++++||+|+.+.....+... .....++.++++|+++|.|++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQIT-----FHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHH-----HHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999988876542 5689999999999865322111111 122345689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
+.|.++++.+..+
T Consensus 158 ~~f~~ia~~l~~~ 170 (215)
T PTZ00132 158 KPFLWLARRLTND 170 (215)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988654
No 123
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=6.4e-30 Score=162.85 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=128.9
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCccccc-cccc--eeEEEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
-+.-+||++++|..-+|||||+-|++.+++.... .|.- +....+++ ....+.||||+|+++|..+-+.||+++++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 3456899999999999999999999887744332 3333 22233333 44679999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+++|||++|+++|+..+.|...+.... ...+.+++|+||+|+.+++.+. .......++.-++.++++||+++.||.
T Consensus 89 alLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt---~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVT---RQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred eEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhh---HHHHHHHHHhhchhheecccccccCHH
Confidence 999999999999999999999886543 3568899999999997754322 111223334556789999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++|..+...+.++
T Consensus 165 elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 165 ELFESLTAKMIEH 177 (218)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 124
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=2.9e-28 Score=166.93 Aligned_cols=160 Identities=19% Similarity=0.273 Sum_probs=116.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+.||+++|++|+|||||++++..+. ...+.+|....+. .+.. ....+.+||++|++.+......++.++|+++++|
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 4699999999999999999998666 3344455543322 3333 3467899999999988877777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-H------HHhHhCCCccCCcc-eEEEEeeccCC
Q 030289 92 DSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS-E------VTDKLGLHSLRQRR-WYIQAACATSG 162 (180)
Q Consensus 92 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (180)
|++++++++.+. .|+..+... .++.|+++|+||+|+.+..... + .........++..+ .++|+|||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 999999999987 577766543 2579999999999985421100 0 00000111112233 37999999999
Q ss_pred CChHHHHHHHHHHhh
Q 030289 163 QGLYEGLDWLSSNVS 177 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~ 177 (180)
.|++++|+++.+.+.
T Consensus 159 ~~v~~~f~~l~~~~~ 173 (187)
T cd04129 159 EGVDDVFEAATRAAL 173 (187)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999997764
No 125
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1e-27 Score=165.00 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=110.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE-------cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY-------KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
+||+++|++|||||||++++..+. ...+.+|++..+. .+.+ ..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999888 4456678885442 3333 34689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhccc------------------ccCCCeEEEEEecCCCCCCCCHhHHHhHh-CCCcc
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSED------------------ELREAVLLVFANKQDLPNAMSVSEVTDKL-GLHSL 147 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~iiiv~nK~D~~~~~~~~~~~~~~-~~~~~ 147 (180)
+++|||++++++++.+..|+..+.... ...++|+++|+||+|+.++.......... ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886531 12468999999999997643221111110 11112
Q ss_pred CCcceEEEEeeccCCC
Q 030289 148 RQRRWYIQAACATSGQ 163 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~ 163 (180)
.+.+++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 4455666666766543
No 126
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=2.1e-30 Score=160.65 Aligned_cols=156 Identities=19% Similarity=0.355 Sum_probs=126.5
Q ss_pred EEEcCCCCChHHHHHHhhcCCcc--ccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 20 LMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 20 ~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
+++|++++|||+|+-++..+.+. ...+|+++++....+ .++++++|||.||+++++.+..|++++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999888777633 345788877754333 578999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
.+..+++....|+.++.... ...+.+.+++||||+..++.+ ....+...++.+++||.++||++|.|++..|-.+.
T Consensus 81 ankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v---~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAV---KRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred ccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhcc---ccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 99999999999999997654 356788999999999664321 11222233345678899999999999999999999
Q ss_pred HHhhhc
Q 030289 174 SNVSAK 179 (180)
Q Consensus 174 ~~~~~~ 179 (180)
+.+.+.
T Consensus 157 ~~l~k~ 162 (192)
T KOG0083|consen 157 EELKKL 162 (192)
T ss_pred HHHHHh
Confidence 988764
No 127
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=6.4e-28 Score=164.94 Aligned_cols=161 Identities=20% Similarity=0.290 Sum_probs=132.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+.+||+++|.+|+|||+|+.+|..+. ...|.||++-.+ ..+.+ +...+.|+||+|++++..+...+++..|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 57899999999999999999999988 556678887433 33333 557889999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
|+++++.||+.+..+...+........+|+++|+||+|+...+.+..- .+...+...+++|+++||+.+.+++++|.
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~e---eg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEE---EGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHH---HHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 999999999999999999966666667899999999999874432221 11122445567899999999999999999
Q ss_pred HHHHHhhh
Q 030289 171 WLSSNVSA 178 (180)
Q Consensus 171 ~l~~~~~~ 178 (180)
.+.+.+..
T Consensus 159 ~L~r~~~~ 166 (196)
T KOG0395|consen 159 ELVREIRL 166 (196)
T ss_pred HHHHHHHh
Confidence 99998765
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=8.6e-27 Score=157.00 Aligned_cols=152 Identities=16% Similarity=0.212 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEcCeEEEEEEcCCCCCC----h-----hhHHhhccccC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNVSFTVWDVGGQDKI----R-----PLWRHYFQNTH 85 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~-----~~~~~~~~~~~ 85 (180)
+|+++|++|+|||||+|+|++.... . ...|.+.....+..++..+.+|||||.... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 7999999999999999999987742 1 123566666666667889999999997421 0 11111122368
Q ss_pred EEEEEEECCChhh--HHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRER--IGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|+|+++..+ ++....|+..+... ..+.|+++|+||+|+.+.....+.... ......++++|||++|.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEE-----EELEGEEVLKISTLTEE 154 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHh-----hhhccCceEEEEecccC
Confidence 9999999987654 35555676666433 247899999999999765443331111 12235689999999999
Q ss_pred ChHHHHHHHHHHh
Q 030289 164 GLYEGLDWLSSNV 176 (180)
Q Consensus 164 ~i~~~~~~l~~~~ 176 (180)
|++++++++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999876
No 129
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=4e-27 Score=158.88 Aligned_cols=156 Identities=25% Similarity=0.233 Sum_probs=110.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEcCe-EEEEEEcCCCCC----ChhhHHh---hccccCE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNV-SFTVWDVGGQDK----IRPLWRH---YFQNTHG 86 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~---~~~~~~~ 86 (180)
+|+++|++|||||||+|+|.+.... . ...|.......+...+. .+.+|||||... ....... .+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999876521 1 12355555555666665 999999999632 1122223 3446999
Q ss_pred EEEEEECCCh-hhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDR-ERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|+|++++ ++++.+..|...+.... ...++|+++|+||+|+.+.....+........ ....+++++|++++.|
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE---LWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh---CCCCCEEEEecCCCCC
Confidence 9999999998 78888888877775432 12468999999999987654433322221111 0245799999999999
Q ss_pred hHHHHHHHHHHh
Q 030289 165 LYEGLDWLSSNV 176 (180)
Q Consensus 165 i~~~~~~l~~~~ 176 (180)
++++++++.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 130
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-27 Score=149.30 Aligned_cols=160 Identities=19% Similarity=0.314 Sum_probs=130.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccc-cccceeE----EEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV----ETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..||-+++|+-|+|||+|++.|...++...- .|+++.+ ..+..+++++++|||.|+++++..++.|++++.+++.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 4689999999999999999999987744433 3666544 3455588999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|+|++.+.+...+..|+.+..+.. .++..+++++||.|+...+++.-.. ..+++...+..|.++|+++|.|+++.|
T Consensus 90 vyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yee---ak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEE---AKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHH---HHHHHhhcCeEEEEecccccCcHHHHH
Confidence 999999999999999999886543 4788899999999997765432111 123345567789999999999999999
Q ss_pred HHHHHHhhh
Q 030289 170 DWLSSNVSA 178 (180)
Q Consensus 170 ~~l~~~~~~ 178 (180)
-+..+++.+
T Consensus 166 le~akkiyq 174 (215)
T KOG0097|consen 166 LETAKKIYQ 174 (215)
T ss_pred HHHHHHHHH
Confidence 998888765
No 131
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-28 Score=156.79 Aligned_cols=179 Identities=39% Similarity=0.717 Sum_probs=153.9
Q ss_pred CcchHHHH-hhhcccCccEEEEEcCCCCChHHHHHHhhcCC--------ccccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 1 MGMVISRL-KMLFARKEMRILMVGLDAAGKTTILYKLKLGE--------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
|=.+|+.+ +..+....+.|+|+|+-++|||||+.++.... ..+-.+|++.+..++.+.+..+.+||.+|++
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 44567777 78888999999999999999999998775322 2334579999999999999999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC-CccCCc
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL-HSLRQR 150 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~ 150 (180)
..+++|..||..+|++++++|+++++.++.....+..+.......+.|+++.+||.|+.+.....++...++. .....+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~r 160 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRR 160 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCc
Confidence 9999999999999999999999999999999998888888777889999999999999998777777666653 222345
Q ss_pred ceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 151 RWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 151 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
..++.++||.+|+||++...|++..+.+.
T Consensus 161 d~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 161 DNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 66899999999999999999999988764
No 132
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=1.8e-26 Score=154.68 Aligned_cols=149 Identities=21% Similarity=0.152 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC---cc-cc--ccccceeEEEEEEc-CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE---IV-TT--IPTIGFNVETVEYK-NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~---~~-~~--~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
+.|+++|++|||||||+++|.+.. .. +. ..|.+..+..+... +..+.+|||||++++......++.++|++++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 468999999999999999998643 21 11 23555555556555 7899999999999887777778889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 90 VVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 90 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
|+|+++ +.+.+.+. .. .. ....|+++++||+|+.+.... +++.+.+.... ..+.+++++|++++
T Consensus 81 V~d~~~~~~~~~~~~~~----~~-~~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~ 151 (164)
T cd04171 81 VVAADEGIMPQTREHLE----IL-EL--LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF--LADAPIFPVSAVTG 151 (164)
T ss_pred EEECCCCccHhHHHHHH----HH-HH--hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC--cCCCcEEEEeCCCC
Confidence 999976 22222221 11 11 122489999999999764211 22222222110 13468999999999
Q ss_pred CChHHHHHHHHH
Q 030289 163 QGLYEGLDWLSS 174 (180)
Q Consensus 163 ~~i~~~~~~l~~ 174 (180)
.|+++++..+.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998764
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=3.3e-26 Score=155.71 Aligned_cols=150 Identities=16% Similarity=0.201 Sum_probs=106.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--c------ccccc------ccceeE----EEE-----EEcCeEEEEEEcCCCCCCh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--I------VTTIP------TIGFNV----ETV-----EYKNVSFTVWDVGGQDKIR 74 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~------~~~~~------t~~~~~----~~~-----~~~~~~~~i~D~~G~~~~~ 74 (180)
||+++|++++|||||+++|++.. . ..+.+ +.+... ..+ ...++.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998632 1 11111 112221 112 2256789999999999999
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCCcc
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQRR 151 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~ 151 (180)
..+..+++++|++++|+|+++..+.+....|.... ..++|+++|+||+|+.+... .+++.+.++.. .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----P 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----c
Confidence 99999999999999999998866555555443322 24678999999999865321 12233332221 1
Q ss_pred eEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 152 WYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
..++++||++|.|++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 25899999999999999999998764
No 134
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=144.86 Aligned_cols=164 Identities=48% Similarity=0.818 Sum_probs=152.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcC-eEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+++.+||+++|..++|||||+..|.+..+....||.|++...+..++ ..+.+||.+|+...+..|..||.+.|++|||+
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI 93 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI 93 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence 37899999999999999999999998888888999999999999965 99999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
|++|+..++++...+.+++.......+|+.+..||.|+......+++...+.+...+.+-+.+-+||+.+++|+..-.+|
T Consensus 94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w 173 (185)
T KOG0074|consen 94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW 173 (185)
T ss_pred eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence 99999999999999999888877888999999999999988888899989888888889999999999999999998888
Q ss_pred HHHHh
Q 030289 172 LSSNV 176 (180)
Q Consensus 172 l~~~~ 176 (180)
+....
T Consensus 174 v~sn~ 178 (185)
T KOG0074|consen 174 VQSNP 178 (185)
T ss_pred hhcCC
Confidence 87654
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=4.6e-26 Score=158.09 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=109.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-c--ccccccceeEEEEEEcCe-EEEEEEcCCCCCC--hhh------HHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-V--TTIPTIGFNVETVEYKNV-SFTVWDVGGQDKI--RPL------WRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~------~~~~~ 81 (180)
...++|+++|++|||||||+|++++... . ...+|.+.....+...+. .+.+|||||.... ... ....+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999998762 2 234566666666666444 8999999997321 111 11235
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
.++|++++|+|++++.+......|...+.. ....++|+++|+||+|+.+..... ........+++++||++
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~--------~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE--------ERLEAGRPDAVFISAKT 189 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH--------HHhhcCCCceEEEEcCC
Confidence 689999999999988776665555443322 223468999999999997643322 11223345799999999
Q ss_pred CCChHHHHHHHHHHh
Q 030289 162 GQGLYEGLDWLSSNV 176 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (180)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998764
No 136
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=2.3e-27 Score=159.16 Aligned_cols=163 Identities=19% Similarity=0.246 Sum_probs=125.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEE---EcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVE---YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~---~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+|++++|+..+|||+|+-.+..+. +..+.||+--++ ..+. ...+.+.+|||+|++.|+.+++..|.++|+++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 356899999999999999998888777 667778776333 2333 35678999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCH-hHHHh--------HhCCCccCCcc-eEEEEe
Q 030289 89 FVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSV-SEVTD--------KLGLHSLRQRR-WYIQAA 157 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~~~ 157 (180)
+||++.++.+++... +|+.++..+ .++.|+++|++|.|+.++... +.+.. ..+...++..+ ..|++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999875 787777544 389999999999999854321 11110 11111112233 479999
Q ss_pred eccCCCChHHHHHHHHHHhhh
Q 030289 158 CATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
||+++.|++++|+..++....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhc
Confidence 999999999999999988754
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2e-25 Score=164.02 Aligned_cols=159 Identities=22% Similarity=0.212 Sum_probs=117.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEE-cCeEEEEEEcCCCCC-------ChhhHHhhcccc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEY-KNVSFTVWDVGGQDK-------IRPLWRHYFQNT 84 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 84 (180)
-..|+++|.|+||||||+|+|+..+ ...+ ..|..+....+.+ +..++.+||+||..+ +...+...++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3568999999999999999999765 2222 3467777777777 567899999999642 122233455689
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhH-HHhHhCCCccCCcceEEEEeeccCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSE-VTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
+++++|+|+++.++++....|...+.... ...++|+++|+||+|+.+.....+ ..... ....+.+++++||+++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg 313 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTG 313 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCC
Confidence 99999999998778888888877775442 234789999999999976443221 11111 1223467999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
+|++++++++.+.+.+
T Consensus 314 ~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 314 EGLDELLRALWELLEE 329 (335)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988765
No 138
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=2.6e-25 Score=149.72 Aligned_cols=154 Identities=21% Similarity=0.194 Sum_probs=108.1
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcccc---ccccceeEEEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
.|+++|++|+|||||+|+|..++.... ..|.......+..+ +..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998774332 23444444444443 679999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh---HhCCCc--cCCcceEEEEeeccCCCChH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD---KLGLHS--LRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~Sa~~~~~i~ 166 (180)
|+++....+. ...+..+ . ..+.|+++|+||+|+.... .+.+.. ...... ......+++++|+++|.|++
T Consensus 82 d~~~~~~~~~-~~~~~~~-~---~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQT-IEAIKLA-K---AANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHH-HHHHHHH-H---HcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 9987432111 1112212 1 1468999999999987532 222211 111111 11234689999999999999
Q ss_pred HHHHHHHHHhh
Q 030289 167 EGLDWLSSNVS 177 (180)
Q Consensus 167 ~~~~~l~~~~~ 177 (180)
++++++.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988654
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=4.6e-25 Score=146.59 Aligned_cols=153 Identities=22% Similarity=0.294 Sum_probs=113.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+||+++|++|+|||||++++.... ...+.++++..... +...+ +.+.+||+||+..+...+..++++++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 3799999999999999999999888 44445555544443 55566 7899999999999999999899999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 91 VDSNDR-ERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 91 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|.... .++.... .|...+..... .+.|+++++||+|+.......+....+.. ....+++++||.++.|++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSA 155 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHH
Confidence 998765 5555544 55555544332 27899999999999764423232222221 12236999999999999999
Q ss_pred HHHHH
Q 030289 169 LDWLS 173 (180)
Q Consensus 169 ~~~l~ 173 (180)
++++-
T Consensus 156 ~~~l~ 160 (161)
T TIGR00231 156 FKIVE 160 (161)
T ss_pred HHHhh
Confidence 99863
No 140
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=2.2e-25 Score=160.69 Aligned_cols=123 Identities=21% Similarity=0.368 Sum_probs=103.1
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE---------------cCeEEEEEEcCCCC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY---------------KNVSFTVWDVGGQD 71 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~---------------~~~~~~i~D~~G~~ 71 (180)
.+.+...+||+++|+.|||||||+++|..+.+ ..+.+|++..+ ..+.+ ..+.+.||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 45678889999999999999999999998874 45568888654 33333 24679999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccc-----------cCCCeEEEEEecCCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDE-----------LREAVLLVFANKQDLPNA 132 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~iiiv~nK~D~~~~ 132 (180)
+|+.++..++++++++|+|||++++++++.+..|+..+..... ..++|+++|+||+|+...
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999999999999999999999999999999999998875421 125899999999998653
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=5e-26 Score=157.58 Aligned_cols=160 Identities=23% Similarity=0.303 Sum_probs=103.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEEcCeEEEEEEcCC-----------CCCChhhHHhh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKNVSFTVWDVGG-----------QDKIRPLWRHY 80 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 80 (180)
+.+.++|+++|++|||||||+|+|.+.... ...|++......+... .+.+||||| ++.++..+..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 346789999999999999999999987632 2344444333333333 689999999 34455555555
Q ss_pred cc----ccCEEEEEEECCChhhH-H--------HHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCC
Q 030289 81 FQ----NTHGLIFVVDSNDRERI-G--------EAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLH 145 (180)
Q Consensus 81 ~~----~~~~~i~v~d~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~ 145 (180)
+. .++++++|+|.++...+ + .....+...+. ..++|+++|+||+|+.+.. ..+++...++..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 160 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLY 160 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCC
Confidence 54 35788888887643211 0 01111122222 2478999999999986543 233444444431
Q ss_pred -ccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 146 -SLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 146 -~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
.....+.+++++||++| |+++++++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 11111236899999999 999999999998765
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.3e-25 Score=147.33 Aligned_cols=134 Identities=21% Similarity=0.187 Sum_probs=92.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCC-----CChhhHHhhccccCEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD-----KIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~~i~v~ 91 (180)
+||+++|++|||||||+|+|.+... .+.+|.+..+ .. .+|||||+. .+..... .++++|++++|+
T Consensus 1 ~kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~~-----~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~ 70 (142)
T TIGR02528 1 KRIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVEY-----ND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQ 70 (142)
T ss_pred CeEEEECCCCCCHHHHHHHHcCCcc-ccccceeEEE-----cC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEe
Confidence 3899999999999999999997764 2344543332 22 689999973 2333333 578999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcc-eEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++.++.. ..|.... ..|+++|+||+|+.+. ...++..+... ..+ .+++++||++|.|++++|
T Consensus 71 d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 71 SATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIERAKELLE-----TAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred cCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHHHHHHHHH-----HcCCCcEEEEecCCCCCHHHHH
Confidence 9998887644 2333221 2389999999998652 22222221111 112 278999999999999999
Q ss_pred HHHH
Q 030289 170 DWLS 173 (180)
Q Consensus 170 ~~l~ 173 (180)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 143
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=8.8e-25 Score=168.30 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=111.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC----------Chhh-HHh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK----------IRPL-WRH 79 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~ 79 (180)
..++|+++|.+|||||||+|+|++... ....+ |.+.....+...+..+.+|||||..+ +... ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 468999999999999999999998762 33333 44444556667888899999999532 2222 234
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+++++|++++|+|+++..+.+... ++..+. ..++|+++|+||+|+.+.....................+++++||
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA 364 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA 364 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence 678999999999999877665553 333332 247899999999999753322222222221111223357899999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
++|.|++++|..+.+.+.+
T Consensus 365 k~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 365 KTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.93 E-value=2.8e-24 Score=142.96 Aligned_cols=143 Identities=20% Similarity=0.213 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhcccc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQNT 84 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~ 84 (180)
++|+++|++|+|||||++++++... ....+ |..+....+...+.++.+|||||...+.. .....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998762 22222 33344455666788999999999765532 133466789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
|++++|+|++++.+......+.. ....|+++|+||+|+.+.... .......+++++||+++.|
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCC
Confidence 99999999998766555443322 257899999999999764432 1223356899999999999
Q ss_pred hHHHHHHHHHHh
Q 030289 165 LYEGLDWLSSNV 176 (180)
Q Consensus 165 i~~~~~~l~~~~ 176 (180)
++++++++.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 145
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=2.6e-24 Score=147.33 Aligned_cols=155 Identities=22% Similarity=0.210 Sum_probs=112.5
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccc-------------------cccceeEEEEEEcCeEEEEEEcCCCCCChhhHH
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTI-------------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR 78 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 78 (180)
+|+++|.+|+|||||+|+|++....... .|.......+...+..+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 5899999999999999999876632211 233334445555788999999999998888899
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh----HHHhHhCCCcc-------
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS----EVTDKLGLHSL------- 147 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~----~~~~~~~~~~~------- 147 (180)
.+++.+|++++|+|+.++.... ...++.... ..+.|+++|+||+|+..+.... ++.+.+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 9999999999999998754322 223333322 1478999999999998644322 22223322111
Q ss_pred --CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 148 --RQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 148 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.....+++++||++|.|+++++.++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 234678999999999999999999998875
No 146
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=1.6e-24 Score=160.25 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=108.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc----ccccccceeEEEEEEcCeEEEEEEcCCCCC-Chhh-------HHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNVSFTVWDVGGQDK-IRPL-------WRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~~~~~ 81 (180)
.+..+|+++|++|||||||+|+|.+.... ....|.+.....+..++.++.+|||||... +..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 45679999999999999999999987743 223455555566777888999999999743 2222 12346
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
.++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...+..+.+... .....++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---HPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---CCCcEEEEEeccC
Confidence 78999999999764 333443333333222 24567889999998653 333444333211 1124799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
|.|++++++++.+.+.+
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999988764
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=1.3e-24 Score=159.64 Aligned_cols=157 Identities=24% Similarity=0.251 Sum_probs=114.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEEcC-eEEEEEEcCCCCCC----hhh---HHhhcccc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEYKN-VSFTVWDVGGQDKI----RPL---WRHYFQNT 84 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~---~~~~~~~~ 84 (180)
...|+++|.++||||||+|+|+..+ ...+ ..|..+....+.+.+ .++.+||+||..+. ..+ ....+.++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4679999999999999999999765 2222 346666777777766 89999999996432 122 33344579
Q ss_pred CEEEEEEECCCh---hhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 85 HGLIFVVDSNDR---ERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 85 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
+++++|+|+++. ++++....|..++.... ...+.|+++|+||+|+.++...+++.+.+. ...+.+++++||+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAk 312 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISAL 312 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEcc
Confidence 999999999876 67777777766654432 235789999999999976543333333322 1223579999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030289 161 SGQGLYEGLDWLSSNV 176 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (180)
+++|++++++++.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998865
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.93 E-value=4.6e-25 Score=149.51 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=109.0
Q ss_pred EEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEc-CeEEEEEEcCCCCC----Chh---hHHhhccccCEEEE
Q 030289 21 MVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYK-NVSFTVWDVGGQDK----IRP---LWRHYFQNTHGLIF 89 (180)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~---~~~~~~~~~~~~i~ 89 (180)
++|++|||||||+|+|.+... ..+ ..|.......+... +..+.+|||||... .+. .....++++|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998762 222 23555666666666 88999999999632 111 22345678999999
Q ss_pred EEECCCh------hhHHHHHHHHHHHhcccc------cCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEe
Q 030289 90 VVDSNDR------ERIGEAKDELHRMLSEDE------LREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 90 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
|+|+.+. .+++....|...+..... ..+.|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999887 567777777776654322 1478999999999997654433321 111122234579999
Q ss_pred eccCCCChHHHHHHHHHH
Q 030289 158 CATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~ 175 (180)
|++++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998765
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=2.4e-24 Score=155.18 Aligned_cols=152 Identities=17% Similarity=0.136 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc--ccc-cccc-eeEEEEEEcCeEEEEEEcCCCCCCh--------hhHHhhccccC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV--TTI-PTIG-FNVETVEYKNVSFTVWDVGGQDKIR--------PLWRHYFQNTH 85 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~--~~~-~t~~-~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~~ 85 (180)
+|+++|.+|||||||+|+|++.... +.. .|+. .........+.++.+|||||..... .....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999987732 222 2333 2223334466789999999965431 12345678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++++|+|+++..+.+ ..++..+ .. .+.|+++|+||+|+.+.....+....+... ....+++++||++|.|+
T Consensus 82 vvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAIL---EDFKDIVPISALTGDNT 152 (270)
T ss_pred EEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhh---cCCCceEEEecCCCCCH
Confidence 999999998765543 2222222 22 468999999999997532222211111111 01127999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030289 166 YEGLDWLSSNVSA 178 (180)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (180)
+++++++.+.+.+
T Consensus 153 ~~L~~~l~~~l~~ 165 (270)
T TIGR00436 153 SFLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988754
No 150
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=2e-24 Score=159.93 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=109.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-ccc--cccccceeEEEEEE-cCeEEEEEEcCCCCC---------ChhhHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVT--TIPTIGFNVETVEY-KNVSFTVWDVGGQDK---------IRPLWRHYF 81 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~ 81 (180)
..++|+++|.+|||||||+|+|++.. ... ..+|.++....+.. .+..+.+|||||..+ +... ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 44999999999999999999999876 222 34677777777777 578999999999722 2222 2247
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
.++|++++|+|++++.+.+....|...+ ......+.|+++|+||+|+.+........ . ...+++++||++
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~~~v~~~~---~------~~~~~i~iSAkt 336 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDEPRIERLE---E------GYPEAVFVSAKT 336 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCChHhHHHHH---h------CCCCEEEEEccC
Confidence 7899999999999887766655443333 22222468999999999997543222111 1 113589999999
Q ss_pred CCChHHHHHHHHHH
Q 030289 162 GQGLYEGLDWLSSN 175 (180)
Q Consensus 162 ~~~i~~~~~~l~~~ 175 (180)
|.|++++++++.+.
T Consensus 337 g~GI~eL~~~I~~~ 350 (351)
T TIGR03156 337 GEGLDLLLEAIAER 350 (351)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998765
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=2.1e-24 Score=143.79 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=104.4
Q ss_pred EEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh------hHHhhcc--ccCEEEE
Q 030289 21 MVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP------LWRHYFQ--NTHGLIF 89 (180)
Q Consensus 21 i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~~~i~ 89 (180)
++|.+|+|||||+|++.+.. .....+ |.......+..++..+.+|||||+..+.. .+..++. ++|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999876 332233 55566667777788999999999876543 3555664 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|+|+++.+.. ..++..+.. .++|+++|+||+|+.+..........+ ....+.+++++|+.++.|+++++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL----SELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH----HHhhCCCeEEEEccCCCCHHHHH
Confidence 9999875432 233333322 368999999999997643222111111 11224579999999999999999
Q ss_pred HHHHHHhh
Q 030289 170 DWLSSNVS 177 (180)
Q Consensus 170 ~~l~~~~~ 177 (180)
+++.+.+.
T Consensus 150 ~~l~~~~~ 157 (158)
T cd01879 150 DAIAELAE 157 (158)
T ss_pred HHHHHHhc
Confidence 99988754
No 152
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.93 E-value=2.7e-24 Score=164.24 Aligned_cols=146 Identities=19% Similarity=0.275 Sum_probs=111.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 81 (180)
+..++|+++|.+|||||||+|+|++.. .....+ |.++....+..++..+.+|||||...+... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 567999999999999999999999876 233333 555666677778899999999998655322 33467
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
+++|++++|+|++++.+.+....|.. ..+.|+++|+||+|+.+..... .....+++++|+++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeC
Confidence 88999999999998876654433322 2468999999999997643221 11234689999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030289 162 GQGLYEGLDWLSSNVS 177 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~ 177 (180)
|.|++++++++.+.+.
T Consensus 355 g~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 355 GEGIDELREAIKELAF 370 (449)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=9.7e-25 Score=143.88 Aligned_cols=151 Identities=28% Similarity=0.416 Sum_probs=113.9
Q ss_pred EEcCCCCChHHHHHHhhcCCc--cccccccceeEEEEEEc----CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289 21 MVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVETVEYK----NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~--~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
++|++|+|||||++++++... ....+|. ......... +..+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998775 2333444 555554443 788999999999888888888999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
++.+......|+..........+.|+++++||+|+........... ..........+++++|+.++.|++++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEEL--AEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHH--HHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 9988888888743333334456899999999999876544333210 00111234568999999999999999999863
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.93 E-value=6.5e-24 Score=161.36 Aligned_cols=152 Identities=16% Similarity=0.183 Sum_probs=112.5
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HH
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WR 78 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 78 (180)
..-+..++|+++|++|||||||+|+|++.. .....| |.++....+..++..+.+|||||...+... ..
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~ 277 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSF 277 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHH
Confidence 344678999999999999999999999875 333334 344555667778899999999998655432 34
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.+++++|++++|+|++++.+.+.. |+.... ..+.|+++|+||+|+... +.+++. ...+.+++++|
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~--------~~~~~~~~~vS 342 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFV--------SSKVLNSSNLS 342 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhh--------hhcCCceEEEE
Confidence 577899999999999987766554 555442 246899999999999653 222221 12234689999
Q ss_pred ccCCCChHHHHHHHHHHhhh
Q 030289 159 ATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~ 178 (180)
+++ .||+++++.+.+.+.+
T Consensus 343 ak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHH
Confidence 998 6999999999887754
No 155
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.6e-24 Score=151.90 Aligned_cols=164 Identities=26% Similarity=0.335 Sum_probs=120.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE--c--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY--K--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+..+||+++|+.|||||||+++|..+.+. .+.+|++..+..... . .+++.+|||+|+++++..+..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 34599999999999999999999998844 455676654443333 2 577999999999999999999999999999
Q ss_pred EEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH-HHhH----------hCCCccC-CcceEEE
Q 030289 89 FVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE-VTDK----------LGLHSLR-QRRWYIQ 155 (180)
Q Consensus 89 ~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~-~~~~----------~~~~~~~-~~~~~~~ 155 (180)
+|+|..+. ...+....|...+... .....|+++|+||+|+........ +... ....... .....++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL 161 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence 99999984 4445556676666443 224689999999999987543211 1100 0000000 1123489
Q ss_pred Eeecc--CCCChHHHHHHHHHHhhh
Q 030289 156 AACAT--SGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 156 ~~Sa~--~~~~i~~~~~~l~~~~~~ 178 (180)
++|++ ++.+++++|..+.+.+.+
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHHHH
Confidence 99999 999999999999988754
No 156
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.93 E-value=3.4e-24 Score=148.26 Aligned_cols=157 Identities=25% Similarity=0.400 Sum_probs=115.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhcccc-CEEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNT-HGLIFVVD 92 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d 92 (180)
+|+++|++|||||||+++|..+.+....+++......+.. .+..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988755555555544444443 367899999999999998889999999 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHhC-------------C------------
Q 030289 93 SNDR-ERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKLG-------------L------------ 144 (180)
Q Consensus 93 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~-------------~------------ 144 (180)
+.+. .++.....++..++... ..+++|+++++||+|+......+.+.+.+. +
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67777777777665432 125899999999999876433222111100 0
Q ss_pred -------C-ccC--CcceEEEEeeccCCC-ChHHHHHHHHH
Q 030289 145 -------H-SLR--QRRWYIQAACATSGQ-GLYEGLDWLSS 174 (180)
Q Consensus 145 -------~-~~~--~~~~~~~~~Sa~~~~-~i~~~~~~l~~ 174 (180)
. .+. ...+.+.++|+..+. |++.+.+|+.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 0 011 235678999998876 69999999864
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=1.2e-24 Score=149.61 Aligned_cols=157 Identities=19% Similarity=0.091 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--------cc--ccccccceeEEEEEEc--------------CeEEEEEEcCCCCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--------IV--TTIPTIGFNVETVEYK--------------NVSFTVWDVGGQDK 72 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--------~~--~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 72 (180)
+||+++|++++|||||+++|+... .. ....|.+.....+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998631 11 1124555555444443 77999999999865
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCc--
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHS-- 146 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~-- 146 (180)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444434456789999999998643332222221 1111 25689999999998753322 22222211110
Q ss_pred cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
....+++++++||++|.|++++++++.+++..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11235689999999999999999999988753
No 158
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.8e-24 Score=147.34 Aligned_cols=146 Identities=23% Similarity=0.259 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhc--CCccccc-----------------cccceeEEEEEEcCeEEEEEEcCCCCCChhhH
Q 030289 17 MRILMVGLDAAGKTTILYKLKL--GEIVTTI-----------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLW 77 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~--~~~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 77 (180)
-+|+++|++++|||||+++|+. +.+.... .|.......+..++..+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 3322211 12223334566688999999999999999999
Q ss_pred HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhC-C-CccCCcce
Q 030289 78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLG-L-HSLRQRRW 152 (180)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~-~-~~~~~~~~ 152 (180)
..+++++|++++|+|+++.. ......++..... .++|+++|+||+|+..... .+++...+. . ....+.++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998632 2222333333321 3688999999999975322 122222211 0 11233467
Q ss_pred EEEEeeccCCCChHH
Q 030289 153 YIQAACATSGQGLYE 167 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~ 167 (180)
+++++||++|.|+.+
T Consensus 158 ~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 158 PVLYASAKNGWASLN 172 (194)
T ss_pred CEEEeehhccccccc
Confidence 899999999977643
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=6.2e-24 Score=162.51 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=111.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh-----------HH
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL-----------WR 78 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~ 78 (180)
...++|+++|.+|+|||||+|+|++.. .....+ |.+.....+..++..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 345899999999999999999999876 222222 444444556667789999999997544321 23
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC-CCCCHhHHHhHhCCCccCCcceEEEEe
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP-NAMSVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
.+++.+|++++|+|++++.+.+.. .++.... ..+.|+++|+||+|+. +....+++...+.........++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDL-RIAGLIL----EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHH-HHHHHHH----HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 467899999999999876554433 2222222 2468999999999997 322233444333322222234689999
Q ss_pred eccCCCChHHHHHHHHHHhh
Q 030289 158 CATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (180)
||++|.|++++|+++.+...
T Consensus 325 SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988654
No 160
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2e-24 Score=141.54 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcCeEEEEEEcCCCCCC------hhhHHhhc--cccC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKI------RPLWRHYF--QNTH 85 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~~~ 85 (180)
++|+++|.|+||||||+|+|++.. .... ..|++.....+...+..+.++|+||--.+ ......++ .+.|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 589999999999999999999988 2222 33777778888989999999999993222 23344454 4789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
++++|+|+++.+ .......++.. .++|+++++||+|..... +.+.+.+.+ ++|++++||++
T Consensus 81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L--------g~pvi~~sa~~ 145 (156)
T PF02421_consen 81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERL--------GVPVIPVSART 145 (156)
T ss_dssp EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHH--------TS-EEEEBTTT
T ss_pred EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHh--------CCCEEEEEeCC
Confidence 999999998643 33333444432 379999999999976532 244455454 45799999999
Q ss_pred CCChHHHHHHH
Q 030289 162 GQGLYEGLDWL 172 (180)
Q Consensus 162 ~~~i~~~~~~l 172 (180)
++|++++++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=2.3e-23 Score=140.60 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=105.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh-----------hhHHhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR-----------PLWRHY 80 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~~~~~~ 80 (180)
.++|+++|++|+|||||+|+|++... ....+ +.......+...+..+.+|||||..... ......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 57999999999999999999987652 12222 3333334555677789999999965431 112335
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEee
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
+.++|++++|+|++++.+.... .+..... ..+.|+++++||+|+.+. ...+++.+............+++++|
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 6789999999999887654332 2222221 136899999999999765 33333333332221111235899999
Q ss_pred ccCCCChHHHHHHHHHH
Q 030289 159 ATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~ 175 (180)
++++.|++++++++.+.
T Consensus 157 a~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 157 ALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.92 E-value=9.6e-24 Score=140.42 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=101.3
Q ss_pred EEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhccccCEE
Q 030289 20 LMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQNTHGL 87 (180)
Q Consensus 20 ~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~~ 87 (180)
+++|.+|+|||||+|+|++.. .....+ |.+.........+..+.+|||||...+.. .+...++++|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 479999999999999999875 222222 44455566667788999999999887544 344567889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCCChH
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQGLY 166 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 166 (180)
++|+|+.+..+... .++...+.. .+.|+++|+||+|+.+.....+.... .+. +++++|++++.|++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~--------~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYS--------LGFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHh--------cCCCCeEEEecccCCCHH
Confidence 99999976433222 222222222 35899999999999764322111111 122 58999999999999
Q ss_pred HHHHHHHHHh
Q 030289 167 EGLDWLSSNV 176 (180)
Q Consensus 167 ~~~~~l~~~~ 176 (180)
++++++.+.+
T Consensus 148 ~l~~~l~~~~ 157 (157)
T cd01894 148 DLLDAILELL 157 (157)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 163
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-26 Score=150.89 Aligned_cols=161 Identities=15% Similarity=0.276 Sum_probs=130.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE----EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE----TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+.-+|++|+|..++||||+|+++|.+- ...+..|+++++. .+..+++...+||++|+++++..+..|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 457899999999999999999999888 4455667776543 33446778899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+||+.+|+.+|+....|...+... ...+|.++|-||+|+.++...+. .+....++..+..++.+|+++..|+.++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~---~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDK---GEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcch---HHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999998665 46799999999999987532211 1111122334556899999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|.++++.+.++
T Consensus 173 F~YLaeK~~q~ 183 (246)
T KOG4252|consen 173 FAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 164
>PTZ00099 rab6; Provisional
Probab=99.92 E-value=5.1e-24 Score=144.16 Aligned_cols=131 Identities=18% Similarity=0.342 Sum_probs=104.4
Q ss_pred cccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC
Q 030289 42 VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE 117 (180)
Q Consensus 42 ~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
..+.||++..+.. +.. +.+++.+|||||++++...+..+++++|++++|||++++++++.+..|+..+.... ...
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~ 85 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKD 85 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4567888876643 333 45889999999999999999999999999999999999999999999999887553 257
Q ss_pred CeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 118 AVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 118 ~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
.|+++|+||+|+.+.. ..++... .....+..+++|||++|.||+++|+++++.+.+
T Consensus 86 ~piilVgNK~DL~~~~~v~~~e~~~-----~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRKVTYEEGMQ-----KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CeEEEEEECcccccccCCCHHHHHH-----HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999996532 2222221 122335578999999999999999999998865
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=1.6e-23 Score=161.34 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhcc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYFQ 82 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 82 (180)
...+|+|+|.+|||||||+|+|++... ....+ |.+.....+...+..+.+|||||.+. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 347999999999999999999998762 23333 33344555566788899999999763 2334566788
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
.+|++++|+|+++..+... ..+. ..+.. .++|+++|+||+|+..... +........ .+ ..+++||++|
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~-~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g----~~-~~~~iSA~~g 184 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVA-RVLRR---SGKPVILAANKVDDERGEA--DAAALWSLG----LG-EPHPVSALHG 184 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHH-HHHHH---cCCCEEEEEECccCCccch--hhHHHHhcC----CC-CeEEEEcCCC
Confidence 9999999999987654322 2222 22222 4789999999999864321 111111111 11 2469999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.|++++++++.+.+.+
T Consensus 185 ~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 185 RGVGDLLDAVLAALPE 200 (472)
T ss_pred CCcHHHHHHHHhhccc
Confidence 9999999999988754
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.9e-23 Score=159.17 Aligned_cols=159 Identities=26% Similarity=0.325 Sum_probs=111.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--ccc-cccccceeEEEEEEcCeEEEEEEcCCCCC----Chhh---HHhhccccC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--IVT-TIPTIGFNVETVEYKNVSFTVWDVGGQDK----IRPL---WRHYFQNTH 85 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~~ 85 (180)
-..|+++|.|+||||||+|+|++.+ ... ...|..+....+...+.++.+||+||... ...+ ....+.++|
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 4579999999999999999999766 222 23577788888888889999999999532 1111 233457899
Q ss_pred EEEEEEECCC----hhhHHHHHHHHHHHhccc----------ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcc
Q 030289 86 GLIFVVDSND----RERIGEAKDELHRMLSED----------ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRR 151 (180)
Q Consensus 86 ~~i~v~d~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
++++|+|+++ ++.++....+...+.... .....|.++|+||+|+.+.....+.... .+...+
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~----~l~~~g 314 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRP----ELEARG 314 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHH----HHHHcC
Confidence 9999999975 234444444333332221 2346899999999999764333222211 112235
Q ss_pred eEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 152 WYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
++++++||+++.|+++++.++.+.+.+
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999988754
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=5.9e-24 Score=141.66 Aligned_cols=142 Identities=22% Similarity=0.173 Sum_probs=95.1
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCCh----hhHHhhccccCEEEEEEEC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR----PLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~~~~~~~~i~v~d~ 93 (180)
+|+++|++|+|||||+|++.+.... ..+|.++.+ ... .+|||||..... ......++++|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~v~~-----~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQAVEF-----NDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceEEEE-----CCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998865421 122322222 111 279999963222 2223347899999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
++.++. ...|+..+ ..+.|+++++||+|+.+ ...+++.+...... ...+++++||+++.|++++|+++.
T Consensus 75 ~~~~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 75 NDPESR--LPAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---FEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred CCcccc--cCHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---CCCCEEEEECCCccCHHHHHHHHH
Confidence 877654 33444443 13578999999999865 33333332211111 124899999999999999999998
Q ss_pred HHhhh
Q 030289 174 SNVSA 178 (180)
Q Consensus 174 ~~~~~ 178 (180)
+.+.+
T Consensus 144 ~~~~~ 148 (158)
T PRK15467 144 SLTKQ 148 (158)
T ss_pred Hhchh
Confidence 87753
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=8.4e-23 Score=153.78 Aligned_cols=153 Identities=26% Similarity=0.284 Sum_probs=109.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEc-CeEEEEEEcCCCCC----ChhhHHh---hccccCE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYK-NVSFTVWDVGGQDK----IRPLWRH---YFQNTHG 86 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~~---~~~~~~~ 86 (180)
.|+++|.|+||||||+|+|++.+. ..+ ..|..+....+... +..+.+||+||... ...+... .+.++++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 799999999999999999998762 222 34666777777775 78999999999642 2223333 3456999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 87 LIFVVDSNDR---ERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 87 ~i~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
+++|+|+++. ++++....|...+.... ...++|+++|+||+|+..... .+++.+.+. .+++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCC
Confidence 9999999754 56666666655554332 234789999999999853211 222222222 4799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
+.|++++++++.+.+.+
T Consensus 312 geGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 312 GQGLDELLYAVAELLEE 328 (424)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 169
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.91 E-value=1.8e-23 Score=144.19 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=107.1
Q ss_pred HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE-EEEcCeEEEEEEcCCCC----------CChh
Q 030289 8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET-VEYKNVSFTVWDVGGQD----------KIRP 75 (180)
Q Consensus 8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~----------~~~~ 75 (180)
+++.++....+|+++|++|||||||+|+|++.+ ...+.++.+..... +...+.++.+|||||.. .+..
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 356677889999999999999999999999875 33434444322211 11124789999999953 2233
Q ss_pred hHHhhcccc---CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289 76 LWRHYFQNT---HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW 152 (180)
Q Consensus 76 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
....+++.+ +++++++|..++.... ..++...+.. .+.|+++++||+|+.+....+....... ..+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~--~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~ 169 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKEL--DLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDD 169 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHH--HHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCC
Confidence 444555544 6788889887643322 1222222222 3678999999999976433332222111 11111145
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+++++|++++.|++++++.+.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 79999999999999999999988765
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=8.5e-23 Score=136.89 Aligned_cols=154 Identities=20% Similarity=0.180 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccc--c-cc-ccceeEEEEEEcCeEEEEEEcCCCCCChh--------hHHhhcc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVT--T-IP-TIGFNVETVEYKNVSFTVWDVGGQDKIRP--------LWRHYFQ 82 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~--~-~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~ 82 (180)
+..+|+++|++|+|||||+|+|++.+... . .. +.......+...+..+.+|||||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999876221 1 11 22222233444668899999999765432 2344577
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC-CCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN-AMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
++|++++|+|++++. .....++...+.. .+.|+++|+||+|+.. .....+........ ....+++++|+++
T Consensus 82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 153 (168)
T cd04163 82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL---GPFAEIFPISALK 153 (168)
T ss_pred hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc---cCCCceEEEEecc
Confidence 899999999998762 2222333332222 2578999999999974 33333333333221 1134789999999
Q ss_pred CCChHHHHHHHHHHh
Q 030289 162 GQGLYEGLDWLSSNV 176 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (180)
+.+++++++.+.+.+
T Consensus 154 ~~~~~~l~~~l~~~~ 168 (168)
T cd04163 154 GENVDELLEEIVKYL 168 (168)
T ss_pred CCChHHHHHHHHhhC
Confidence 999999999998753
No 171
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=1.3e-23 Score=145.47 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=101.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC----cc--ccccccceeEEEEEEc---------------------------C----
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE----IV--TTIPTIGFNVETVEYK---------------------------N---- 59 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~----~~--~~~~t~~~~~~~~~~~---------------------------~---- 59 (180)
++|+++|+.|+|||||+..+.+.. .. ....|....+..+... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 489999999999999999997542 11 1111222222211111 2
Q ss_pred --eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH
Q 030289 60 --VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137 (180)
Q Consensus 60 --~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~ 137 (180)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 67999999999988877888888899999999998632111112222222111 2357999999999976332222
Q ss_pred HHhHhCC--CccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 138 VTDKLGL--HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 138 ~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
..+.... ........+++++||++|+|++++++++.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1111110 0001124679999999999999999999987754
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.5e-22 Score=155.09 Aligned_cols=159 Identities=19% Similarity=0.185 Sum_probs=110.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh-----------hHH
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP-----------LWR 78 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 78 (180)
...++|+++|.+|+|||||+|+|++.. .....+ |.......+...+..+.+|||||..+... ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 357999999999999999999999766 223233 33333344556788899999999643211 123
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.+++.+|++++|+|++++.+.+.. ..+.... ..+.|+++++||+|+.++....++...+.........++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLAL----EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 467889999999999876554333 2222222 24689999999999985433444444433222223456899999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030289 159 ATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~ 177 (180)
|++|.|++++++.+.+...
T Consensus 326 A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887654
No 173
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.90 E-value=1.6e-22 Score=132.66 Aligned_cols=159 Identities=24% Similarity=0.333 Sum_probs=128.9
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCccc---------c----ccccceeEEEEEEcC-eEEEEEEcCCCCCChh
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVT---------T----IPTIGFNVETVEYKN-VSFTVWDVGGQDKIRP 75 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~---------~----~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~ 75 (180)
.+.+....||+|+|+.++||||++.+++...... + ..|+..++......+ ..+.+++||||++++.
T Consensus 4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence 4567889999999999999999999998766211 1 125556777777754 8999999999999999
Q ss_pred hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|..+.+++.++++++|.+.+..+ -...+..+..+.. .+|+++.+||.|+.+....+++.+.+.... .+.+++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi 156 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVI 156 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCcee
Confidence 999999999999999999988776 3333444444422 299999999999999988988888776553 457899
Q ss_pred EeeccCCCChHHHHHHHHHH
Q 030289 156 AACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~ 175 (180)
+.++.++++..+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998888765
No 174
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=1.5e-23 Score=143.63 Aligned_cols=157 Identities=24% Similarity=0.220 Sum_probs=112.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEE--EcCeEEEEEEcCCCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVE--YKNVSFTVWDVGGQD 71 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~--~~~~~~~i~D~~G~~ 71 (180)
+..+|+++|+.++|||||+++|+... .. ....|.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 46799999999999999999997433 10 11236667777777 789999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH----HHhHh-CCCc
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE----VTDKL-GLHS 146 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~----~~~~~-~~~~ 146 (180)
.|.......+..+|++++|+|+.+.-. ......+... . ..++|+++|+||+|+.. ....+ +...+ ....
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~-~~~~~~l~~~-~---~~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQ-PQTEEHLKIL-R---ELGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBST-HHHHHHHHHH-H---HTT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccc-cccccccccc-c---ccccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 988888888999999999999985532 1222223322 2 24788999999999983 22222 22122 1111
Q ss_pred cCC-cceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 147 LRQ-RRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 147 ~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
... ..++++++||.+|.|++++++.+.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 121 3579999999999999999999998764
No 175
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.2e-23 Score=133.97 Aligned_cols=109 Identities=26% Similarity=0.456 Sum_probs=80.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc---cccc----ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV---TTIP----TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~---~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
||+|+|++|||||||+++|++.... ...+ +.......+......+.+||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988744 1112 22222223333445699999999998888777779999999999
Q ss_pred EECCChhhHHHHHHH---HHHHhcccccCCCeEEEEEecCC
Q 030289 91 VDSNDRERIGEAKDE---LHRMLSEDELREAVLLVFANKQD 128 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~iiiv~nK~D 128 (180)
||++++++++.+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999887554 4444322 35699999999998
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=3.6e-22 Score=151.11 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=106.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cc--ccccccceeEEEEEEcCe-EEEEEEcCCCCCC--hhhH------Hhhcccc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IV--TTIPTIGFNVETVEYKNV-SFTVWDVGGQDKI--RPLW------RHYFQNT 84 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~--~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~------~~~~~~~ 84 (180)
.+|+++|.+|||||||+|+|++.. .. ....|.+.....+...+. .+.+|||+|..+. ...+ ...++++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999866 22 224567766666666554 8899999997332 2222 2345789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceE-EEEeeccCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWY-IQAACATSGQ 163 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (180)
|++++|+|++++.+.+....|...+ ......++|+++|+||+|+.+.... ..... ..+.+ ++++||++|.
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v~~iL-~el~~~~~pvIiV~NKiDL~~~~~~-~~~~~-------~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAVNTVL-EEIDAHEIPTLLVMNKIDMLDDFEP-RIDRD-------EENKPIRVWLSAQTGA 348 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHH-HHhccCCCCEEEEEEcccCCCchhH-HHHHH-------hcCCCceEEEeCCCCC
Confidence 9999999999887666554332222 1112246899999999998653211 11111 01222 5889999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
|++++++++.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988753
No 177
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2e-22 Score=150.97 Aligned_cols=159 Identities=19% Similarity=0.168 Sum_probs=111.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcC-eEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKN-VSFTVWDVGGQDKI-------RPLWRHYFQNTHG 86 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ 86 (180)
.|+|+|.||||||||+|+|++.+ .... ..|.......+...+ ..+.++||||..+- .......+.++|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 69999999999999999999766 2222 246667777777764 56999999996532 1122345778999
Q ss_pred EEEEEECC---ChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 87 LIFVVDSN---DRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 87 ~i~v~d~~---~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
+++|+|++ +.+.++....|+..+.... ...+.|+++|+||+|+.......+....+.... ....+++++||+++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~--~~~~~Vi~ISA~tg 318 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEAL--GWEGPVYLISAASG 318 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHh--CCCCCEEEEECCCC
Confidence 99999987 4556666666666654431 224689999999999976443333222221110 11125899999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.|++++++.+.+.+.+
T Consensus 319 ~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 319 LGVKELCWDLMTFIEE 334 (390)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999988764
No 178
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=3.5e-23 Score=140.82 Aligned_cols=151 Identities=20% Similarity=0.264 Sum_probs=96.7
Q ss_pred HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcCeEEEEEEcCCCCC----------C
Q 030289 7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKNVSFTVWDVGGQDK----------I 73 (180)
Q Consensus 7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~ 73 (180)
++++..+.+.++|+++|++|+|||||+|++++.. ...+.++.+.. ...+... ..+.+|||||... +
T Consensus 9 ~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 9 KLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHH
Confidence 4566777999999999999999999999999875 33333333322 1122222 3799999999532 2
Q ss_pred hhhHHhhcc---ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCc
Q 030289 74 RPLWRHYFQ---NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHS 146 (180)
Q Consensus 74 ~~~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~ 146 (180)
......+++ .++++++|+|++++-+.... .+...+.. .+.|+++++||+|+..+... +++.+.+...
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~- 161 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD- 161 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc-
Confidence 233344554 35899999999864332222 22222222 46899999999999754322 2233332221
Q ss_pred cCCcceEEEEeeccCCCChH
Q 030289 147 LRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~ 166 (180)
.....++++||++|+|++
T Consensus 162 --~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred --cCCCceEEEECCCCCCCC
Confidence 123479999999999984
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=1.7e-22 Score=162.17 Aligned_cols=160 Identities=17% Similarity=0.150 Sum_probs=112.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC----------Chhh-HH
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK----------IRPL-WR 78 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~ 78 (180)
....||+++|.+|||||||+|+|++.+ .....+ |.+.....+..++..+.+|||||..+ +... ..
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 346899999999999999999999876 233333 44444555667888899999999532 1111 23
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.+++.+|++++|+|+++..+.+... ++..+.. .++|+++|+||+|+.+....+.+..............+++++|
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iS 602 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLS 602 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEE
Confidence 4568899999999999876665543 3333322 4689999999999976433333333222211112235789999
Q ss_pred ccCCCChHHHHHHHHHHhhh
Q 030289 159 ATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~ 178 (180)
|++|.|++++++.+.+.+.+
T Consensus 603 Aktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 603 AKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 180
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=3.3e-22 Score=156.30 Aligned_cols=157 Identities=19% Similarity=0.221 Sum_probs=110.7
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcccc-c--cccceeEEEEEEcCe-EEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNV-SFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
+..+..+|+++|++++|||||+++|.+...... . .|.......+...+. .+.+|||||++.|..++...+..+|++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 456778999999999999999999988763332 2 244444455555444 899999999999999999899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc----CCcceEEEEeeccCCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL----RQRRWYIQAACATSGQ 163 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 163 (180)
++|+|+++...-+.. ..+... ...++|+++++||+|+... ..+++...+..... .....+++++||++|.
T Consensus 163 ILVVda~dgv~~qT~-e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 163 VLVVAADDGVMPQTI-EAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEEECCCCCCHhHH-HHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 999999864221222 222221 1247899999999999652 33333333211111 1123579999999999
Q ss_pred ChHHHHHHHHH
Q 030289 164 GLYEGLDWLSS 174 (180)
Q Consensus 164 ~i~~~~~~l~~ 174 (180)
|++++++++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999864
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.1e-22 Score=154.30 Aligned_cols=146 Identities=22% Similarity=0.284 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhcccc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYFQNT 84 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~ 84 (180)
++|+++|.+|||||||+|+|.+.+. ....+ |.+..+..+...+..+.+|||||... +......++.++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999998762 23233 45566667777889999999999876 233355677899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQ 163 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (180)
|++++|+|+.+..+. ...++..++.. .+.|+++|+||+|..+.. ....+... .+. .++++||++|.
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~~--~~~~~~~~------lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDEE--ADAYEFYS------LGLGEPYPISAEHGR 148 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccch--hhHHHHHh------cCCCCCEEEEeeCCC
Confidence 999999999864332 22222233322 368999999999975421 11111111 122 37999999999
Q ss_pred ChHHHHHHHHHH
Q 030289 164 GLYEGLDWLSSN 175 (180)
Q Consensus 164 ~i~~~~~~l~~~ 175 (180)
|++++++.+.+.
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999873
No 182
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=2.7e-22 Score=157.44 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=108.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--cc------cc----------ccccceeEEEEEE-----cCeEEEEEEcCCCCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--IV------TT----------IPTIGFNVETVEY-----KNVSFTVWDVGGQDK 72 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~~------~~----------~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~ 72 (180)
.-|++++|+.++|||||+++|+... .. .+ ..|+......+.+ ..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998642 10 11 1122222222322 237899999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCC
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQ 149 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 149 (180)
|...+..++..+|++++|+|+++..+.+....|.... . .++|+++|+||+|+..... .+++.+.++..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~---- 153 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD---- 153 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC----
Confidence 9999999999999999999999866655555554433 1 3678999999999865321 12333332221
Q ss_pred cceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 150 RRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
...++++||++|.|++++++++.+.+..
T Consensus 154 -~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 -ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred -cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1258999999999999999999987653
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.1e-22 Score=154.15 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=105.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhccccC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYFQNTH 85 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~ 85 (180)
+|+++|.+|||||||+|+|.+.+ .....+ |.+..+..+...+..+.+|||||... +......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 58999999999999999999876 222223 45566677777888999999999632 3344666788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQG 164 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (180)
++++|+|+.+..+ .....+..++.. .+.|+++|+||+|+............ .+. +++++||.+|.|
T Consensus 81 ~vl~vvD~~~~~~--~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~--------lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 81 VILFVVDGREGLT--PEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYS--------LGFGEPIPISAEHGRG 147 (429)
T ss_pred EEEEEEeCCCCCC--HHHHHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHh--------cCCCCeEEEeCCcCCC
Confidence 9999999976432 222222333322 36899999999998754321111111 222 589999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030289 165 LYEGLDWLSSNVSA 178 (180)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (180)
++++++++.+.+.+
T Consensus 148 v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 148 IGDLLDAILELLPE 161 (429)
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999988743
No 184
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=4.2e-22 Score=145.28 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=104.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcc--cccc-ccceeEEE-EEEcCeEEEEEEcCCCCCCh--------hhHHhhcc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP-TIGFNVET-VEYKNVSFTVWDVGGQDKIR--------PLWRHYFQ 82 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~-t~~~~~~~-~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 82 (180)
+.-.|+++|++|||||||+|+|++.+.. ...+ |+...... ...++.++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4456999999999999999999987732 2222 33322222 33356899999999965432 22344667
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... ....+....+... ....+++++||++
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~---~~~~~i~~iSA~~ 155 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSEL---MDFAEIVPISALK 155 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhh---CCCCeEEEecCCC
Confidence 89999999999872 22233333333332 36899999999999742 2233333332211 1134799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
+.|++++++++.+.+.+
T Consensus 156 ~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 156 GDNVDELLDVIAKYLPE 172 (292)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999988754
No 185
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.90 E-value=2.3e-22 Score=133.72 Aligned_cols=151 Identities=25% Similarity=0.230 Sum_probs=105.9
Q ss_pred EEcCCCCChHHHHHHhhcCCcc--cccc--ccceeEEEEEEc-CeEEEEEEcCCCCCCh-------hhHHhhccccCEEE
Q 030289 21 MVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYK-NVSFTVWDVGGQDKIR-------PLWRHYFQNTHGLI 88 (180)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~~--~~~~--t~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~i 88 (180)
++|++|+|||||++++.+.... ...+ |........... ...+.+||+||..... .....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999976522 1111 333333344433 7799999999976653 34455788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|+|+.+........ +.... ...+.|+++|+||+|+..+....................+++++|++++.|++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999999876655544 22222 1257899999999999876554443221222223344678999999999999999
Q ss_pred HHHHHHHh
Q 030289 169 LDWLSSNV 176 (180)
Q Consensus 169 ~~~l~~~~ 176 (180)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=2.2e-22 Score=141.77 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=110.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc-ccc-eeEEEEEEcCeEEEEEEcCCCCCC--------hhhHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP-TIG-FNVETVEYKNVSFTVWDVGGQDKI--------RPLWRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~-t~~-~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~ 81 (180)
.+.--|+++|.|+||||||+|++.+.+ ..+..| |+. .-...+..++.++.++||||-.+- .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 344568999999999999999999988 334333 333 444455558899999999994432 22344556
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
..+|+++||+|+++.- ..-..++...+.. .+.|+++++||.|...+.. +.++.+....... ...++++||+
T Consensus 84 ~dvDlilfvvd~~~~~--~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~---f~~ivpiSA~ 155 (298)
T COG1159 84 KDVDLILFVVDADEGW--GPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLP---FKEIVPISAL 155 (298)
T ss_pred ccCcEEEEEEeccccC--CccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCC---cceEEEeecc
Confidence 7899999999998532 2344444444332 4679999999999887655 3344433332211 1279999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030289 161 SGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~ 178 (180)
+|.|++.+.+.+...+.+
T Consensus 156 ~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ccCCHHHHHHHHHHhCCC
Confidence 999999999999988765
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=1.3e-21 Score=156.44 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=112.3
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcccc-c--cccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+..+..+|+|+|+.++|||||+++|........ . .|.......+...+..+.+|||||+..|..++...+..+|+++
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 456789999999999999999999987663321 1 2333444556667789999999999999999998999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC-c-cC--CcceEEEEeeccCCCC
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH-S-LR--QRRWYIQAACATSGQG 164 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~Sa~~~~~ 164 (180)
+|+|+++...-+.... +... ...++|+++++||+|+... +.+.+...+... . .. ...++++++||++|.|
T Consensus 366 LVVdAddGv~~qT~e~-i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 366 LVVAADDGVMPQTIEA-INHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEEECCCCCCHhHHHH-HHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 9999986422122221 2221 1246899999999999653 233333222111 1 11 1236899999999999
Q ss_pred hHHHHHHHHHH
Q 030289 165 LYEGLDWLSSN 175 (180)
Q Consensus 165 i~~~~~~l~~~ 175 (180)
++++++++...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 188
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=1.3e-21 Score=155.34 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=111.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcccc---ccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
+..+..+|+++|+.++|||||+++|........ ..|..+... .+.. .+..+.+|||||+..|..++..++..+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 456788999999999999999999987663321 123332222 2332 358999999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc--cC--CcceEEEEeecc
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS--LR--QRRWYIQAACAT 160 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~ 160 (180)
|++++|+|+++....+.... +..+ ...++|+++++||+|+... ..+++...+.... .. ...++++++||+
T Consensus 320 DiaILVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 320 DIAILIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred CEEEEEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 99999999986432222221 2222 1247899999999999763 2333333322110 11 123689999999
Q ss_pred CCCChHHHHHHHHHHh
Q 030289 161 SGQGLYEGLDWLSSNV 176 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (180)
+|.|++++++++....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999987653
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=3.8e-22 Score=156.50 Aligned_cols=156 Identities=20% Similarity=0.124 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC---c-ccc--ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE---I-VTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~---~-~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+.|+++|++++|||||+++|++.. . .++ ..|+++.+..+...+..+.+||+||++.|.......+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 479999999999999999998633 1 222 2355566666777779999999999999988888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCHhHHHhHhC---CCccCCcceEEEEeeccCCCChH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSVSEVTDKLG---LHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|+++... ......+. ++.. .++| +++|+||+|+.++...+....... .......+.+++++|+++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99986311 11112221 2221 3566 999999999976432222111111 00001124689999999999999
Q ss_pred HHHHHHHHHhh
Q 030289 167 EGLDWLSSNVS 177 (180)
Q Consensus 167 ~~~~~l~~~~~ 177 (180)
+++..+.+.+.
T Consensus 156 eL~~~L~~l~~ 166 (581)
T TIGR00475 156 ELKKELKNLLE 166 (581)
T ss_pred hHHHHHHHHHH
Confidence 99999877654
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.88 E-value=5.8e-22 Score=151.22 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=104.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 58 (180)
..++++|+++|++++|||||+++|+... .. ....|++.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 4678999999999999999999998432 10 1223666667777778
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--H-
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--V- 135 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~- 135 (180)
+..+.+|||||++.|.......+..+|++++|+|++++..+.....++..+... ....++++++||+|+.+... .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEccccccccHHHHH
Confidence 999999999999988766666678999999999998632232222232223222 12346999999999975211 1
Q ss_pred ---hHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 136 ---SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+++.+.+.........++++++||++|+|+++.
T Consensus 161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 122222221222222468999999999999874
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.7e-21 Score=156.48 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=104.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 81 (180)
....+|+|+|.+|||||||+|+|++... ....+ |.+.........+..+.+|||||... +......++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 4457899999999999999999998763 23333 22333334455678999999999663 233455678
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
+.+|++++|+|+++. +......+...+.. .+.|+++|+||+|+..... ......... .+ ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg----~~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG----LG-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC----CC-CeEEEECCC
Confidence 899999999999753 22233222333322 4789999999999865321 111111111 11 247899999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
|.||+++++++.+.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=5.7e-22 Score=146.88 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------hhhHHhhccc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---------RPLWRHYFQN 83 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~ 83 (180)
..|+++|.||||||||+|||++.+ .++..| |.+..+......+..|.++||+|-+.. .......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 679999999999999999999988 455444 778888888888899999999995532 2335667778
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
||+++||+|... .+...++.+..++.. .++|+++|+||+|.........-.-.++.. .++.+||..|.
T Consensus 84 ADvilfvVD~~~--Git~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGRE--GITPADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCC--CCCHHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhcc
Confidence 999999999863 233444444445442 468999999999987432211111223322 57999999999
Q ss_pred ChHHHHHHHHHHh
Q 030289 164 GLYEGLDWLSSNV 176 (180)
Q Consensus 164 ~i~~~~~~l~~~~ 176 (180)
|+.++.+++...+
T Consensus 152 Gi~dLld~v~~~l 164 (444)
T COG1160 152 GIGDLLDAVLELL 164 (444)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999999886
No 193
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=4.5e-21 Score=121.86 Aligned_cols=161 Identities=24% Similarity=0.344 Sum_probs=125.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC---ccccccccc-eeEEEEEE---cCeEEEEEEcCCCCCC-hhhHHhhccccCE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIG-FNVETVEY---KNVSFTVWDVGGQDKI-RPLWRHYFQNTHG 86 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~t~~-~~~~~~~~---~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~ 86 (180)
+..||++.|..++|||++++.|..+. ..++.||++ +....+.. ....++++||.|-..+ ..+-+.|+.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 47899999999999999999998776 345567776 44445544 3457999999997777 6678889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+++||+..|++||+.....-..+-.+.....+|+++.+||+|+.++...+.- ....++....+..+++++++..++-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d---~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD---VAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHH---HHHHHHhhhheeEEEEEeccchhhh
Confidence 9999999999999887765555545555567999999999999876544321 1223334456789999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
|.|-++...+.+
T Consensus 165 epf~~l~~rl~~ 176 (198)
T KOG3883|consen 165 EPFTYLASRLHQ 176 (198)
T ss_pred hHHHHHHHhccC
Confidence 999999887654
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.4e-21 Score=143.63 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=118.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC--cccc--ccccceeEEEEEEcCeEEEEEEcCCCCC----------Ch-hhHHh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT--IPTIGFNVETVEYKNVSFTVWDVGGQDK----------IR-PLWRH 79 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~-~~~~~ 79 (180)
..+||+|+|.|++|||||+|++++.+ .... ..|.+.-...+..++.++.++||+|-.+ |. .....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999888 3333 3466677777888999999999999332 22 22556
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhHHHhHhCCCccCCcceEEEEe
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
.+..+|.+++|+|++.+ +...+..+..++.. .+.++++++||+|+.++ ...++....+......-..++++++
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 67789999999999844 33444444444333 57889999999999875 4455665555554334445699999
Q ss_pred eccCCCChHHHHHHHHHHhh
Q 030289 158 CATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (180)
||.++.++.++|+.+.+...
T Consensus 332 SA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EecCCCChHHHHHHHHHHHH
Confidence 99999999999999887644
No 195
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.88 E-value=6.3e-22 Score=150.99 Aligned_cols=153 Identities=18% Similarity=0.109 Sum_probs=102.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 58 (180)
...+++|+++|+.++|||||+++|+... .. +...|++.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 5678999999999999999999997521 11 1122555556667778
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHH-HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--H
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG-EAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--V 135 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~ 135 (180)
+..+.+|||||++.|.......+..+|++++|+|+++.+... ....+...+... ....++++++||+|+.+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccCccHHHH
Confidence 899999999999988777777788999999999998764321 111111122222 12357999999999974211 1
Q ss_pred h----HHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 136 S----EVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 136 ~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+ ++...+.........++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 1 2222221111222346899999999999986
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.88 E-value=9.7e-21 Score=133.48 Aligned_cols=149 Identities=23% Similarity=0.217 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCc-cc--cccccceeEEEEEEcCeEEEEEEcCCCCCCh-------hhHHhhccccCEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEI-VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWRHYFQNTHGL 87 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~-~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~ 87 (180)
+|+++|++|+|||||+|+|.+... .. ...|.+.....+...+..+++||+||..... ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 689999999999999999997662 21 1235566677777889999999999975432 1234578899999
Q ss_pred EEEEECCChh-hHHHHHHHHH----------------------------------------HHhccc-------------
Q 030289 88 IFVVDSNDRE-RIGEAKDELH----------------------------------------RMLSED------------- 113 (180)
Q Consensus 88 i~v~d~~~~~-~~~~~~~~~~----------------------------------------~~~~~~------------- 113 (180)
++|+|+++++ ....+...+. .++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999997654 2222222221 111000
Q ss_pred -----------ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 114 -----------ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 114 -----------~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
...-+|+++|+||+|+.+....+ .+. . ...++++||+++.|++++|+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~----~~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD----LLA----R--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH----HHh----c--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 01125899999999987543222 111 1 12489999999999999999998875
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=7.5e-21 Score=149.48 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=109.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cc---------c-------cccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV---------T-------TIPTIGFNVETVEY-----KNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~---------~-------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~ 70 (180)
++.-|++++|+.++|||||+.+|+... .. . ...|+......+.+ +++.+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 345699999999999999999997532 10 0 01122222223332 3688999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCcc
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSL 147 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~ 147 (180)
..+...+..++..+|++++|+|+++....+....|.... ..++|+++|+||+|+..... .+++.+.++..
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-- 157 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-- 157 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC--
Confidence 999988999999999999999998765444444443322 13678999999999865321 12233322221
Q ss_pred CCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 148 RQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
...++++||++|.|++++++++.+.+..
T Consensus 158 ---~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 158 ---ASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ---cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 1258999999999999999999987653
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=9.7e-21 Score=140.74 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=116.2
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------H
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------W 77 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~ 77 (180)
...-+..+|++++|.||||||||+|.|++.+ .++..| |.++-...+.+.++.+++.||+|-.+-... .
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs 290 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERA 290 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHH
Confidence 3445889999999999999999999999887 666555 777888899999999999999995543222 4
Q ss_pred HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEe
Q 030289 78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
...+.++|.+++|+|.+.+.+ .....+... ...+.|+++|.||+|+..+...... .. ..+.+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~--~~d~~~~~~----~~~~~~~i~v~NK~DL~~~~~~~~~--~~------~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLD--KEDLALIEL----LPKKKPIIVVLNKADLVSKIELESE--KL------ANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCc--hhhHHHHHh----cccCCCEEEEEechhcccccccchh--hc------cCCCceEEE
Confidence 456678999999999987522 111111111 1356899999999999886553332 11 112368999
Q ss_pred eccCCCChHHHHHHHHHHhhh
Q 030289 158 CATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
|+++++|++.+.+.+.+.+..
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred EecCccCHHHHHHHHHHHHhh
Confidence 999999999999999887654
No 199
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.2e-21 Score=128.68 Aligned_cols=157 Identities=20% Similarity=0.323 Sum_probs=134.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...++++++|+.|.||||++++...+++. ++.+|++........ ..+++..|||.|++.+..+...++-+..+++
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 34899999999999999999999999854 577899977765544 3489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
++||+..+-.+.....|..++.+.. .++||++++||.|..... .+.......+..++++++.|++++.|.+.-
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccc
Confidence 9999999999999999999998764 469999999999987642 234445556677889999999999999999
Q ss_pred HHHHHHHhh
Q 030289 169 LDWLSSNVS 177 (180)
Q Consensus 169 ~~~l~~~~~ 177 (180)
|-|+.+.+.
T Consensus 161 Fl~LarKl~ 169 (216)
T KOG0096|consen 161 FLWLARKLT 169 (216)
T ss_pred hHHHhhhhc
Confidence 999998864
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=8.2e-21 Score=152.45 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=106.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-ccc--ccccceeEEEEEEcCeEEEEEEcCCCCCChh----------hHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRP----------LWRHYF 81 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 81 (180)
+.++|+++|++|||||||+|+|.+... ... ..|++.....+...+.++.+||+||...+.. ....++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 568999999999999999999987652 222 2355555556677888999999999765532 122333
Q ss_pred --cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 82 --QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 82 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
..+|++++|+|+++.+.. ..+..++.+ .++|+++++||+|+.+........+.+. +..+++++++|+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA 150 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVS 150 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEe
Confidence 378999999999875432 233344432 3689999999999875433222122211 223568999999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030289 160 TSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~ 176 (180)
.+++|++++++.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999987754
No 201
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=1.8e-20 Score=132.28 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=109.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--cc------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IV------------T-------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 76 (180)
||+++|+.|+|||||+++|+... .. + ...|+......+...+.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 68999999999999999997532 00 0 111334455667778999999999999999888
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC---CHhHHHhHhCC---------
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM---SVSEVTDKLGL--------- 144 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~---~~~~~~~~~~~--------- 144 (180)
+..+++.+|++++|+|+.+... .....++..... .++|+++++||+|+.... ..+++.+.++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 9999999999999999986533 233344443322 368999999999987521 11122221111
Q ss_pred -----------------------------------------------CccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 145 -----------------------------------------------HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 145 -----------------------------------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
......-+|++..||.++.|++.+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000123468999999999999999999988764
No 202
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=9.7e-21 Score=131.65 Aligned_cols=146 Identities=19% Similarity=0.164 Sum_probs=93.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--ccc--------------------------------cccccceeEEEEEEcCeEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKNVSFT 63 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~~~~~ 63 (180)
||+++|++|+|||||+++|+... ... ...|.+.....+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999997543 110 11244444555666788999
Q ss_pred EEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhH
Q 030289 64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDK 141 (180)
Q Consensus 64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~ 141 (180)
+|||||+..+.......++.+|++++|+|+++... ..... ...+... ....++++|+||+|+.+... .+.+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~-~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRR-HSYILSL--LGIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHH-HHHHHHH--cCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 99999998876666777899999999999986421 11111 1112221 12245788999999875321 1112211
Q ss_pred hCC--CccCCcceEEEEeeccCCCChHH
Q 030289 142 LGL--HSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 142 ~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+.. ........+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 110 00111124699999999999975
No 203
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=5.3e-21 Score=150.21 Aligned_cols=143 Identities=19% Similarity=0.235 Sum_probs=99.5
Q ss_pred cCCCCChHHHHHHhhcCCc-ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh------HHhhc--cccCEEEEEE
Q 030289 23 GLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL------WRHYF--QNTHGLIFVV 91 (180)
Q Consensus 23 G~~~~GKStli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~~i~v~ 91 (180)
|++|||||||+|++.+... ....| |++.....+..++.++.+|||||+..+... .+.++ .++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998762 33334 444455566778889999999998776432 34443 3689999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
|+++.+. ...+..+..+ .++|+++|+||+|+.+........+.+. +..+.+++++||++|+|+++++++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~----~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE----ERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH----HHcCCCEEEEECCCCCCHHHHHHH
Confidence 9986432 2333333322 3689999999999865332211111111 123467999999999999999999
Q ss_pred HHHHh
Q 030289 172 LSSNV 176 (180)
Q Consensus 172 l~~~~ 176 (180)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98753
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.86 E-value=4.8e-21 Score=145.08 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=104.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc------ccccccceeEEEEE--------------E------------cCeE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETVE--------------Y------------KNVS 61 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~------~~~~t~~~~~~~~~--------------~------------~~~~ 61 (180)
+.+++|+++|+.++|||||+++|.+.... +...|+...+..+. . .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 56899999999999999999999753211 11112222211110 1 1467
Q ss_pred EEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hH
Q 030289 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SE 137 (180)
Q Consensus 62 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~ 137 (180)
+.+||+||++.|...+......+|++++|+|+++..........+..+ .. ....|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998642112222222222 21 123468999999999764322 12
Q ss_pred HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+.+.+... ...+++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22211111 123568999999999999999999988654
No 205
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=126.31 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=111.3
Q ss_pred HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccc----ccceeEEEEEEcCeEEEEEEcCC----------CC
Q 030289 7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP----TIGFNVETVEYKNVSFTVWDVGG----------QD 71 (180)
Q Consensus 7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G----------~~ 71 (180)
.+++.++.....|+++|.++||||||||+|++++ ...... |.-+++..+.. .+.++|.|| .+
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHH
Confidence 3466777788899999999999999999999976 333333 44445544433 399999999 23
Q ss_pred CChhhHHhhccc---cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCC
Q 030289 72 KIRPLWRHYFQN---THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGL 144 (180)
Q Consensus 72 ~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~ 144 (180)
.+......|++. ..++++++|+..+- ...+..+.+++.. .++|+++++||+|....... ..+...+..
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 344556666653 46788889986532 3333344444333 58999999999998875433 334434443
Q ss_pred CccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
...... .++..|+.++.|++++...|.+.+.+.
T Consensus 167 ~~~~~~--~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 167 PPPDDQ--WVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred CCCccc--eEEEEecccccCHHHHHHHHHHHhhcc
Confidence 322111 188899999999999999999887653
No 206
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=9.1e-21 Score=130.05 Aligned_cols=146 Identities=18% Similarity=0.118 Sum_probs=97.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-----c--------------cccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-----I--------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-----~--------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 76 (180)
+++|+++|+.++|||||+++|+... . .....|+......+..++.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 6899999999999999999997531 0 01122444444455557789999999999888777
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCccCCc
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHSLRQR 150 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~~ 150 (180)
....+..+|++++|+|+...-. ......+..+ .. .++| +++++||+|+..... .+ ++...+....+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence 7788889999999999975321 1222223322 22 3455 789999999864322 11 22222222222234
Q ss_pred ceEEEEeeccCCCChH
Q 030289 151 RWYIQAACATSGQGLY 166 (180)
Q Consensus 151 ~~~~~~~Sa~~~~~i~ 166 (180)
+++++++||++|.|+.
T Consensus 157 ~v~iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTPIVRGSALKALEGD 172 (195)
T ss_pred CCeEEEeeCccccCCC
Confidence 6799999999999853
No 207
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.86 E-value=1.1e-20 Score=148.21 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=113.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--ccc-----------------cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHH
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IVT-----------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR 78 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 78 (180)
||+|+|+.++|||||+++|+... +.. ...|+......+...+.++.+|||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999998532 111 12244455567778899999999999999988899
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCcc--CCcceE
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSL--RQRRWY 153 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~~ 153 (180)
.+++.+|++++|+|+.+. .......|+..... .++|.++|+||+|+.+... .+++.+.+..... ....++
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 999999999999999753 23444555555433 4688999999999865321 2222222211111 234578
Q ss_pred EEEeeccCCC----------ChHHHHHHHHHHhhh
Q 030289 154 IQAACATSGQ----------GLYEGLDWLSSNVSA 178 (180)
Q Consensus 154 ~~~~Sa~~~~----------~i~~~~~~l~~~~~~ 178 (180)
++++||++|. |++.+++.+.+.+..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 9999999996 799999999987653
No 208
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=3.2e-20 Score=145.11 Aligned_cols=153 Identities=22% Similarity=0.205 Sum_probs=102.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccc-----cccceeEEEEEE----------------cCeEEEEEEcCCCCCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEY----------------KNVSFTVWDVGGQDKI 73 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~~ 73 (180)
+..-|+++|++++|||||+|+|.+....... .+++..+..... ....+.+|||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 3456999999999999999999977643222 233333322211 1124889999999999
Q ss_pred hhhHHhhccccCEEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--------------Hh
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--------------VS 136 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--------------~~ 136 (180)
..++..+++.+|++++|+|+++. .+++.+. .+. ..++|+++++||+|+.+... .+
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 99999999999999999999863 3332221 111 23689999999999864210 00
Q ss_pred HHH-----------hHhCCCcc----------CCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 137 EVT-----------DKLGLHSL----------RQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 137 ~~~-----------~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
.+. ..+....+ .....+++++||++|+|++++..++...
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000 01111100 1224689999999999999999988653
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.85 E-value=5.4e-20 Score=144.24 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=112.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccc-----------------ccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------IPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (180)
++..||+++|+.++|||||+++|+... +... ..|+......+..++.++.+|||||+..|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 456799999999999999999998632 2111 113333344566688999999999999999
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCcc--CC
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSL--RQ 149 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~--~~ 149 (180)
..+..+++.+|++++|+|+.+... .....++..... .++|.++++||+|+..... .+++...+..... ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999976422 223333333322 4678899999999875332 2333333321111 23
Q ss_pred cceEEEEeeccCCC----------ChHHHHHHHHHHhh
Q 030289 150 RRWYIQAACATSGQ----------GLYEGLDWLSSNVS 177 (180)
Q Consensus 150 ~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 177 (180)
..++++.+||++|. ++..+++.+.+.+.
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 45789999999998 58889998888765
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=8.5e-21 Score=132.88 Aligned_cols=147 Identities=20% Similarity=0.221 Sum_probs=97.0
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEcCeEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYKNVSFT 63 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (180)
+|+++|+.++|||||+.+|+... .. +...|.+.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999996321 00 011144455566777899999
Q ss_pred EEEcCCCCCChhhHHhhccccCEEEEEEECCChh-----hH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----C
Q 030289 64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE-----RI-GEAKDELHRMLSEDELREAVLLVFANKQDLPNA----M 133 (180)
Q Consensus 64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~ 133 (180)
+|||||+..+...+...+..+|++++|+|+++.. .. ......+. .... ....|+++++||+|+... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEccccccccccHH
Confidence 9999998877766777778899999999998742 11 11222222 2111 123689999999999742 1
Q ss_pred CHhHHHhHh----CCCccCCcceEEEEeeccCCCChHH
Q 030289 134 SVSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 134 ~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
..+++.+.+ .........++++++||++|.|+++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 122333222 2222233457899999999999873
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.85 E-value=1.7e-20 Score=142.07 Aligned_cols=160 Identities=16% Similarity=0.115 Sum_probs=102.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC----cc--ccccccceeEEEEEE--------------c------------Ce
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE----IV--TTIPTIGFNVETVEY--------------K------------NV 60 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~----~~--~~~~t~~~~~~~~~~--------------~------------~~ 60 (180)
..++++|+++|+.++|||||+.+|.+.. .. +...|+...+..+.. . ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4678999999999999999999996531 11 112243332211110 0 25
Q ss_pred EEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh----
Q 030289 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS---- 136 (180)
Q Consensus 61 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~---- 136 (180)
.+.+|||||++.+..........+|++++|+|++++.........+..+ .. ....|+++|+||+|+.++....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HH--cCCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999887666666666789999999998542111111111111 11 1224689999999997643322
Q ss_pred HHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
++...+... ...+.+++++||++|.|++++++.|.+.+.
T Consensus 163 ~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 163 QIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 222211110 123568999999999999999999988654
No 212
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.84 E-value=3.5e-20 Score=119.00 Aligned_cols=135 Identities=20% Similarity=0.251 Sum_probs=92.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCC----CCCChhhHHhhccccCEEEEEEEC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGG----QDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
||+++|+.|+|||||+++|.+.+. .+..|..+.+. =.++|||| ...+.........++|.++++.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~--------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY--------DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec--------ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 799999999999999999987663 33334333331 13479999 333444455555689999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC-CCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP-NAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (180)
+++.+.- .-.+. .....|+|-|+||+|+. ++.+.+...+.+....+. .+|++|+.+|+||+++.++|
T Consensus 74 t~~~~~~--pP~fa------~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 74 TEPRSVF--PPGFA------SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK----EIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred CCCCccC--Cchhh------cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC----CeEEEECCCCcCHHHHHHHH
Confidence 8754311 01111 11357899999999998 444555554454444332 46999999999999999987
Q ss_pred H
Q 030289 173 S 173 (180)
Q Consensus 173 ~ 173 (180)
-
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 213
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.4e-20 Score=121.20 Aligned_cols=162 Identities=34% Similarity=0.593 Sum_probs=137.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
.+.=|++++|.-|+|||||++.|...+.....||.-+....+.+.+.+++-+|.+|+...+..|..|+..+|++++.+|+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda 97 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDA 97 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeeh
Confidence 56789999999999999999999988877788888888888888999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc------------CCcceEEEEeeccC
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL------------RQRRWYIQAACATS 161 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~ 161 (180)
.|.+.+.+....+...+........|+++.+||+|.+.+...++....+++... ..+...+|.||...
T Consensus 98 ~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 98 YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 999999999988888877666678999999999999987766665554433211 23456789999999
Q ss_pred CCChHHHHHHHHHH
Q 030289 162 GQGLYEGLDWLSSN 175 (180)
Q Consensus 162 ~~~i~~~~~~l~~~ 175 (180)
+.+--+.|.|+.+.
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 88888888877654
No 214
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=5.8e-20 Score=123.37 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=94.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEcCeEEEEEEcCCCCCC----------hhhHHhhcc--
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYKNVSFTVWDVGGQDKI----------RPLWRHYFQ-- 82 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~~-- 82 (180)
.|+++|++|+|||||+|.+.++. .....++.+.... .+... ..+.+|||||.... ......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 38999999999999999999544 3333344333222 22223 38999999995432 233334443
Q ss_pred -ccCEEEEEEECCChhhH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEee
Q 030289 83 -NTHGLIFVVDSNDRERI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAAC 158 (180)
Q Consensus 83 -~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 158 (180)
+.+++++++|..+.... ..+.+|+.. .+.|+++++||+|+.................. .....+++++|
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45788999998754221 223333332 24789999999998654332222222110000 12345799999
Q ss_pred ccCCCChHHHHHHHHHHh
Q 030289 159 ATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~ 176 (180)
++++.+++++++++.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.8e-19 Score=141.35 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=102.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCcccccc-----ccceeEEEEEE---------c-------CeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY---------K-------NVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~-----t~~~~~~~~~~---------~-------~~~~~i~D~~G~~ 71 (180)
+.+...|+++|++++|||||+++|.+.......+ +++..+..... . -..+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3466789999999999999999998655332222 34433322211 0 0127899999999
Q ss_pred CChhhHHhhccccCEEEEEEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--------------
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-------------- 134 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-------------- 134 (180)
.|...+...+..+|++++|+|+++ +.+++.+. .+ . ..++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----IL-K---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HH-H---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999888888899999999999986 33333322 11 1 14689999999999852110
Q ss_pred Hh-----------HHHhHhCCCcc----------CCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 135 VS-----------EVTDKLGLHSL----------RQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 135 ~~-----------~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
.. ++...+....+ ....++++++||++|+|++++++.+...
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00 01111111111 1135789999999999999999887643
No 216
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=8.7e-20 Score=127.75 Aligned_cols=152 Identities=23% Similarity=0.235 Sum_probs=98.3
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccc-----------------cccc-------cceeE-----------------EEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPT-------IGFNV-----------------ETVE 56 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~-----------------~~~t-------~~~~~-----------------~~~~ 56 (180)
||+++|+.++|||||+++|..+.+.. ...| .++.. ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999998643211 0011 11110 2233
Q ss_pred EcCeEEEEEEcCCCCCChhhHHhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289 57 YKNVSFTVWDVGGQDKIRPLWRHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134 (180)
Q Consensus 57 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~ 134 (180)
..+..+.++||||+.+|.......+. .+|++++|+|+..... .....+..++.. .++|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~--~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII--GMTKEHLGLALA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc--HHHHHHHHHHHH---cCCCEEEEEECccccCHHH
Confidence 35678999999999988666555554 6899999999875432 222222222222 4678999999999876433
Q ss_pred Hh----HHHhHhCCCcc---------------------CCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 135 VS----EVTDKLGLHSL---------------------RQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 135 ~~----~~~~~~~~~~~---------------------~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
.. ++.+.+..... .....|+|.+|+.+|+|+++++..|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 22 23333331111 122448999999999999999988754
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=7.9e-20 Score=143.98 Aligned_cols=155 Identities=19% Similarity=0.131 Sum_probs=104.5
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC---c-cc--cccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE---I-VT--TIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~---~-~~--~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
-|+++|+.++|||||+++|.+.. . .+ ...|++..+..+.. ++..+.+|||||++.|.......+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58899999999999999998632 1 12 24566665555544 456789999999999877777888999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCHhHHHhHhCCCc--cCCcceEEEEeeccCCCChHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSVSEVTDKLGLHS--LRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+|+++.-. ......+ .++.. .++| +++|+||+|+.++...+....+..... ..-...+++++||++|.|+++
T Consensus 82 Vda~eg~~-~qT~ehl-~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 82 VACDDGVM-AQTREHL-AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EECCCCCc-HHHHHHH-HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99975311 1112222 22222 2344 689999999976433332222211100 001135899999999999999
Q ss_pred HHHHHHHHhh
Q 030289 168 GLDWLSSNVS 177 (180)
Q Consensus 168 ~~~~l~~~~~ 177 (180)
+++.|.+...
T Consensus 157 L~~~L~~~~~ 166 (614)
T PRK10512 157 LREHLLQLPE 166 (614)
T ss_pred HHHHHHHhhc
Confidence 9999987543
No 218
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.83 E-value=1.7e-20 Score=119.54 Aligned_cols=162 Identities=16% Similarity=0.261 Sum_probs=124.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.-..||.++|++..|||||+-+..+++. .++..+.|++. .++.+ ..+.+++||.+|++++..+.+....++-+++
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 3468999999999999999999988874 45556777654 34444 5678999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
++||.+.++++..+..|+.+..... ..-+| ++|++|.|..-+.. .++--.......++-.+++.|+||+-.+.|++
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~ 175 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ 175 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence 9999999999999999999986543 23455 56799999643222 22211122222334457789999999999999
Q ss_pred HHHHHHHHHhh
Q 030289 167 EGLDWLSSNVS 177 (180)
Q Consensus 167 ~~~~~l~~~~~ 177 (180)
.+|..+.-++-
T Consensus 176 KIFK~vlAklF 186 (205)
T KOG1673|consen 176 KIFKIVLAKLF 186 (205)
T ss_pred HHHHHHHHHHh
Confidence 99998877654
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.82 E-value=8.6e-19 Score=125.75 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--ccc-----------------------cccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--IVT-----------------------TIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
-+|+++|++|+|||||+++|+... ... ...++......+...+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 479999999999999999997421 110 0112334445677789999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.|......+++.+|++++|+|+++... .....++... . ..++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCC
Confidence 888777788899999999999976432 2222333322 2 24689999999999765
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=1.7e-19 Score=136.19 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=105.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-------c------------ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-------V------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (180)
..++++|+++|+.++|||||+++|++... . +...|++.....+..++..+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 56789999999999999999999985310 0 1122444444445556778999999999988
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCHh-----HHHhHhCCCcc
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSVS-----EVTDKLGLHSL 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~~-----~~~~~~~~~~~ 147 (180)
.......+..+|++++|+|+.+.-. ......+... .. .++| +++++||+|+.+..... ++...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 7777777788999999999975321 1222222222 22 3566 78899999987533221 22222222222
Q ss_pred CCcceEEEEeeccCCC--------ChHHHHHHHHHHhh
Q 030289 148 RQRRWYIQAACATSGQ--------GLYEGLDWLSSNVS 177 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~~~ 177 (180)
....++++++||++|. +++++++.+.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 2234689999999983 57788888776653
No 221
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.82 E-value=1.9e-19 Score=125.52 Aligned_cols=157 Identities=21% Similarity=0.309 Sum_probs=104.2
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC----ccccccccceeEEEEEE-cCeEEEEEEcCCCCCChh-----hHHhhccccCEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRP-----LWRHYFQNTHGL 87 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~~~ 87 (180)
||+++|+.|+||||+.+.++.+- .....+|..+....+.. ....+.+||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 79999999999999999998765 22335788888888875 678999999999876533 367788999999
Q ss_pred EEEEECCChh---hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHH----HhHhCCCccCCc---ceEEEEe
Q 030289 88 IFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV----TDKLGLHSLRQR---RWYIQAA 157 (180)
Q Consensus 88 i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~ 157 (180)
|||+|+.+.+ .+..+...+..+... .++..+.++++|+|+..+....+. .+.+.. .+.+. .+.++.|
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~-~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRD-ELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHH-HHHHTT-TSEEEEEE
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHH-HhhhccccceEEEec
Confidence 9999998443 334444444444333 478899999999998764322211 111111 11111 4889999
Q ss_pred eccCCCChHHHHHHHHHHhhh
Q 030289 158 CATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
|..+ ..+-++|..+++.+..
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTST
T ss_pred cCcC-cHHHHHHHHHHHHHcc
Confidence 9999 4899999999998764
No 222
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.82 E-value=9.8e-20 Score=121.95 Aligned_cols=123 Identities=28% Similarity=0.487 Sum_probs=80.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE---cCeEEEEEEcCCCCCChhhHHh---hccccCEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIRPLWRH---YFQNTHGLI 88 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~~i 88 (180)
+.-.|+++|++|+|||+|+.+|..+........+..+. .+.. .+..+.++|+|||++.+..... +..++.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34579999999999999999999987555554443333 2333 4568999999999999765444 478899999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHH
Q 030289 89 FVVDSND-RERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEV 138 (180)
Q Consensus 89 ~v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~ 138 (180)
||+|++. ...+....+++.+++... ....+|++|++||.|+........+
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I 133 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI 133 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence 9999974 556666677766666543 2467999999999999876554433
No 223
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.82 E-value=1e-18 Score=125.99 Aligned_cols=109 Identities=22% Similarity=0.246 Sum_probs=80.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 76 (180)
+|+++|++|+|||||+++|+... .. ....++......+...+.++.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999997432 10 0122344455667778899999999999888777
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+++.+|++++|+|+++......... +... . ..++|.++++||+|...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~~~-~---~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WEFA-D---EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHH-H---HcCCCEEEEEECCccCC
Confidence 8889999999999999987544332222 2222 1 24689999999999775
No 224
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=6.3e-19 Score=118.29 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=122.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcc---ccCEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQ---NTHGLIFV 90 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~~i~v 90 (180)
..+-.|+++|+.++|||+|+-+|..+......+.+..+..++.......+++|.||+.+.+.-...+++ ++.+++||
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 344679999999999999999999888777777888888899888888999999999999877777777 78999999
Q ss_pred EECC-ChhhHHHHHHHHHHHhccc--ccCCCeEEEEEecCCCCCCCCHhHHHhHh-------------------------
Q 030289 91 VDSN-DRERIGEAKDELHRMLSED--ELREAVLLVFANKQDLPNAMSVSEVTDKL------------------------- 142 (180)
Q Consensus 91 ~d~~-~~~~~~~~~~~~~~~~~~~--~~~~~~iiiv~nK~D~~~~~~~~~~~~~~------------------------- 142 (180)
+|+. ..........++.+++... ...++|+++++||.|+......+.+.+.+
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 9975 2344455555555555433 45689999999999998754433222111
Q ss_pred ------CCC----ccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 143 ------GLH----SLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 143 ------~~~----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
+.. ......+.|.++|++++ +++++-+|+.+.+
T Consensus 196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 001 11235678999999998 8999999987753
No 225
>PRK12735 elongation factor Tu; Reviewed
Probab=99.81 E-value=3.9e-19 Score=134.31 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=102.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC-----C--cc------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG-----E--IV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~-----~--~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (180)
+++++|+++|++++|||||+++|++. . .. ....|++.....+..++.++.++||||+..|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 56789999999999999999999852 1 00 11124444444455567789999999998887
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEE-EEEecCCCCCCCCH-h----HHHhHhCCCccC
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL-VFANKQDLPNAMSV-S----EVTDKLGLHSLR 148 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-iv~nK~D~~~~~~~-~----~~~~~~~~~~~~ 148 (180)
......+..+|++++|+|+.+... ......+... .. .++|.+ +++||+|+.+.... + ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 777777889999999999975321 1222333222 21 356654 67999999753221 1 222222111111
Q ss_pred CcceEEEEeeccCCC----------ChHHHHHHHHHHh
Q 030289 149 QRRWYIQAACATSGQ----------GLYEGLDWLSSNV 176 (180)
Q Consensus 149 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 176 (180)
...++++++|+.++. ++.++++.+.+.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 224789999999984 5777777777654
No 226
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.81 E-value=2.3e-18 Score=123.63 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=80.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 76 (180)
||+++|++|+|||||+++|+... .. ....|+......+...+.++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999996321 10 1122445556677778999999999999988888
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+++.+|++++|+|+.+...- .....+.... ..++|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~-~t~~~~~~~~----~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEP-QTETVWRQAD----RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCH-HHHHHHHHHH----HcCCCEEEEEECCCCCC
Confidence 89999999999999999764321 1222233222 24688999999999864
No 227
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.80 E-value=4.3e-19 Score=122.39 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=94.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-cccccccee-----EEEEEE-cCeEEEEEEcCCCCCChhhH-----Hhhccc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN-----VETVEY-KNVSFTVWDVGGQDKIRPLW-----RHYFQN 83 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~-----~~~~~~-~~~~~~i~D~~G~~~~~~~~-----~~~~~~ 83 (180)
++||+++|++|+|||||+|+|++.... ...++.+.. ...+.. ....+.+||+||........ ...+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 478999999999999999999985522 222222211 111111 13478999999975432222 223567
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---------HhHHHhHhCCCcc---C---
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---------VSEVTDKLGLHSL---R--- 148 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---------~~~~~~~~~~~~~---~--- 148 (180)
+|+++++.+. ++......+...+.. .+.|+++|+||+|+..... .+++.+.+..... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8988887432 233444333333332 2578999999999843111 2222222211111 1
Q ss_pred CcceEEEEeecc--CCCChHHHHHHHHHHhhhc
Q 030289 149 QRRWYIQAACAT--SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 149 ~~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~ 179 (180)
....++|.+|+. .+.++..+.+.+...+.++
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 122379999998 5789999999999988754
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.80 E-value=9.8e-19 Score=132.68 Aligned_cols=148 Identities=19% Similarity=0.147 Sum_probs=98.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-----------------c--ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-----------------V--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-----------------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (180)
+.++++|+++|++++|||||+++|++... . +...|++.....+..++.++.++||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 57789999999999999999999986410 0 0112333444445557788999999999888
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCH-h----HHHhHhCCCcc
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSV-S----EVTDKLGLHSL 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~-~----~~~~~~~~~~~ 147 (180)
.......+..+|++++|+|+...-. ......+.. +.. .++| +++++||+|+.+.... + ++...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~-~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILL-AKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHH-HHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777778889999999999975321 222222322 222 3567 7789999999753221 1 22222222222
Q ss_pred CCcceEEEEeeccCCCCh
Q 030289 148 RQRRWYIQAACATSGQGL 165 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~~i 165 (180)
....++++++|+.+|.|+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 223579999999998743
No 229
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.1e-18 Score=131.88 Aligned_cols=149 Identities=20% Similarity=0.245 Sum_probs=111.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC------ChhhHHhhcc--c
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK------IRPLWRHYFQ--N 83 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~~--~ 83 (180)
+..+|+++|+||+|||||+|+|++.. ....-| |++.....+..++.+++++|.||--. -+...+.++. +
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 45679999999999999999999877 444444 77777888888999999999999322 1344555554 4
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
.|+++-|+|+++.+.--.+. .++.+ -+.|++++.|++|..+. .+.+.+.+.+ ++|++++||
T Consensus 82 ~D~ivnVvDAtnLeRnLylt---lQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~L--------GvPVv~tvA 146 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLT---LQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLL--------GVPVVPTVA 146 (653)
T ss_pred CCEEEEEcccchHHHHHHHH---HHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHh--------CCCEEEEEe
Confidence 69999999998765433333 33332 37889999999997653 3444555444 467999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
++|.|++++...+.+...+
T Consensus 147 ~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 147 KRGEGLEELKRAIIELAES 165 (653)
T ss_pred ecCCCHHHHHHHHHHhccc
Confidence 9999999999999875443
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=6e-19 Score=133.37 Aligned_cols=146 Identities=18% Similarity=0.131 Sum_probs=95.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC-----C--c------------cccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG-----E--I------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~-----~--~------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (180)
.+++++|+++|+.++|||||+++|++. + . .+...|++.....+..++..+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 577899999999999999999999732 0 0 01123555555555556788999999999988
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeE-EEEEecCCCCCCCCHh-----HHHhHhCCCcc
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL-LVFANKQDLPNAMSVS-----EVTDKLGLHSL 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iiv~nK~D~~~~~~~~-----~~~~~~~~~~~ 147 (180)
..........+|++++|+|+.+.-. ......+... .. .++|. ++++||+|+.+..... ++...+.....
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7776667778999999999986321 1122222222 22 24554 5789999987532211 22222222222
Q ss_pred CCcceEEEEeeccCCC
Q 030289 148 RQRRWYIQAACATSGQ 163 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~ 163 (180)
....++++++|+.++.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 2224789999999875
No 231
>PRK13351 elongation factor G; Reviewed
Probab=99.79 E-value=3.7e-18 Score=137.20 Aligned_cols=114 Identities=17% Similarity=0.099 Sum_probs=88.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--------------cc-------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--------------IV-------TTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
.++..||+|+|+.|+|||||+++|+... .. ++..|+......+...+..+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 3567899999999999999999997421 00 13346666677788889999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
++...+..+++.+|++++|+|+++....+....| .... ..++|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEEEECCCCCC
Confidence 9988899999999999999999876554443333 2221 23689999999999876
No 232
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.79 E-value=5.2e-18 Score=131.62 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=82.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cc----------------cc-------ccccceeEEEEEEcCeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV----------------TT-------IPTIGFNVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------------~~-------~~t~~~~~~~~~~~~~~~~i~D~~ 68 (180)
.+..+|+|+|+.++|||||+++|+... .. ++ ..++......+..++..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 457799999999999999999997311 00 00 112223345577789999999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
|+..|......+++.+|++++|+|+++.-. .....++... . ..++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVC-R---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECCcccc
Confidence 999988877888999999999999986422 1223333322 2 25789999999999865
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=1.9e-18 Score=120.68 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=76.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccc------------c----------ccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVT------------T----------IPTIGFNVETVEY-----KNVSFTVWDVGGQ 70 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~------------~----------~~t~~~~~~~~~~-----~~~~~~i~D~~G~ 70 (180)
+|+++|+.|+|||||+++|+...... + ..++......+.. ..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 68999999999999999998643110 0 0111122222222 3478999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
..+......++..+|++++|+|+.+..+.. ...++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN-TERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccC
Confidence 999888888999999999999998665432 2333333322 358999999999975
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.79 E-value=1.3e-18 Score=132.85 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=102.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--c--------------------------------cccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I--------------------------------VTTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~--------------------------------~~~~~t~~~~~~~~~~~ 58 (180)
...+++|+++|+.++|||||+.+|+... . .+...|++.....+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 5678999999999999999999886311 0 00112444555556668
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHH-------HHHHHHHHHhcccccCCC-eEEEEEecCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG-------EAKDELHRMLSEDELREA-VLLVFANKQDLP 130 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~iiiv~nK~D~~ 130 (180)
+..+.++|+||+++|.......+..+|++++|+|+++. .++ .....+. +... .++ ++++++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~---~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT---LGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH---cCCCcEEEEEEcccCC
Confidence 88999999999999998889999999999999999852 221 2222222 2222 345 578899999976
Q ss_pred CC----CC----HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 131 NA----MS----VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 131 ~~----~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+. .. .+++...+....+....++|+++|+++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 21 11 222332222222233357899999999999854
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.79 E-value=1.7e-18 Score=132.76 Aligned_cols=148 Identities=20% Similarity=0.149 Sum_probs=99.7
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-------------------ccccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-------------------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-------------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (180)
..+.+++|+++|+.++|||||+++|+... ......|++.....+..++..+.++|+||+.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 35678999999999999999999998521 00111244444455666788999999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCc
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHS 146 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~ 146 (180)
|.......+..+|++++|+|+.+... ....+++... .. .++| +++++||+|+.+... .+ ++...+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 87777778889999999999875422 2223333332 22 3566 788999999976322 12 2222222222
Q ss_pred cCCcceEEEEeeccCCCC
Q 030289 147 LRQRRWYIQAACATSGQG 164 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~ 164 (180)
+....++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 233468999999998854
No 236
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.79 E-value=4.4e-18 Score=120.69 Aligned_cols=152 Identities=27% Similarity=0.346 Sum_probs=107.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCe-EEEEEEcCCCCCC----h---hhHHhhcccc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNV-SFTVWDVGGQDKI----R---PLWRHYFQNT 84 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~-~~~i~D~~G~~~~----~---~~~~~~~~~~ 84 (180)
...|.++|.|++|||||+|+++..+ ..+|. .|..+...++.+++. ++++-|.||--+- + .....-+.+|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 3467899999999999999999766 22332 355566667777554 4999999993321 1 1233445689
Q ss_pred CEEEEEEECCCh---hhHHHHHHHHHHHhcc-cccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEee
Q 030289 85 HGLIFVVDSNDR---ERIGEAKDELHRMLSE-DELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 85 ~~~i~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
+.++||+|.+.. ..++.+...+.++-.+ ....+.|.++|+||+|+++.+. ++++...+... .++++|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~-------~V~pvs 348 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNP-------HVVPVS 348 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCC-------cEEEee
Confidence 999999999887 6666666554444322 2457889999999999975322 14444443322 589999
Q ss_pred ccCCCChHHHHHHHHH
Q 030289 159 ATSGQGLYEGLDWLSS 174 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~ 174 (180)
|+++++++++...+-+
T Consensus 349 A~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLRE 364 (366)
T ss_pred eccccchHHHHHHHhh
Confidence 9999999999987754
No 237
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=1.8e-18 Score=122.16 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=104.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCcccc---ccccc-eeEEEEEEcCeEEEEEEcCCCCC------------Chhh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIG-FNVETVEYKNVSFTVWDVGGQDK------------IRPL 76 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~-~~~~~~~~~~~~~~i~D~~G~~~------------~~~~ 76 (180)
..+..+|+++|.||+|||||.|.+.+.+.... ..|+. -....+..+..++.++||||--. +...
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 36788999999999999999999999882222 22333 33344555889999999999211 0112
Q ss_pred HHhhccccCEEEEEEECCChhhH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-------------Hh----H
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-------------VS----E 137 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-------------~~----~ 137 (180)
....+.++|++++++|+++.... ......+..+ ..+|-++|.||.|...... +. +
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 44566789999999999863221 1222222322 5678899999999754211 11 1
Q ss_pred HHhHhCCCc----c-CCcce----EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 138 VTDKLGLHS----L-RQRRW----YIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 138 ~~~~~~~~~----~-~~~~~----~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+.+++.... + ...++ .+|.+||.+|.||+++.+++..++..
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP 272 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC
Confidence 111111111 1 01122 48999999999999999999987654
No 238
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.78 E-value=1.4e-18 Score=133.59 Aligned_cols=152 Identities=16% Similarity=0.127 Sum_probs=98.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------------------------cccccceeEEEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------------------------TIPTIGFNVETVE 56 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------------------------~~~t~~~~~~~~~ 56 (180)
.+..+||+++|+.++|||||+++|+... ... ...|++..+..+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4678999999999999999999997542 110 0113444455566
Q ss_pred EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--
Q 030289 57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-- 134 (180)
Q Consensus 57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-- 134 (180)
.++.++.+|||||++.|.......+..+|++++|+|+...-. ........+.... ...++++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~--~qt~~~~~l~~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL--DQTRRHSFIATLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc--ccchHHHHHHHHh--CCCceEEEEEeeccccchhHH
Confidence 678899999999999886666666789999999999975321 1111111122211 1247899999999874221
Q ss_pred HhHHHhHhCC--CccC-CcceEEEEeeccCCCChHHH
Q 030289 135 VSEVTDKLGL--HSLR-QRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 135 ~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~~i~~~ 168 (180)
.+++.+.+.. .... ....+++++||++|+|+++.
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2233322211 0000 22468999999999999864
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.78 E-value=3.2e-18 Score=130.73 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=102.5
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--c--------------------------------cccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I--------------------------------VTTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~--------------------------------~~~~~t~~~~~~~~~~~ 58 (180)
..++++|+++|+.++|||||+.+|+... . .+...|++.....+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 5678999999999999999999997511 0 01112455555666668
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hH---HHHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RI---GEAKDELHRMLSEDELREAV-LLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~ 131 (180)
+..+.++|+||+.+|.......+..+|++++|+|+.... .+ ......+.. +.. .++| +++++||+|...
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-~~~---~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALL-AFT---LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHH-HHH---cCCCeEEEEEEcccccc
Confidence 889999999999999888888889999999999997532 11 122222222 222 2444 789999999532
Q ss_pred ----CCCHhH----HHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 132 ----AMSVSE----VTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 132 ----~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+...++ +...+....+....++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 122223 333333333333468999999999999864
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.78 E-value=4.7e-18 Score=128.42 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=104.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-------c------------ccccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-------V------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-------~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (180)
+.+++|+++|+.++|||||+++|++... . +...|++.....+..++.++.++||||+.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 6789999999999999999999986210 0 11224444444455577889999999998887
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEE-EEEecCCCCCCCC-Hh----HHHhHhCCCccC
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL-VFANKQDLPNAMS-VS----EVTDKLGLHSLR 148 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-iv~nK~D~~~~~~-~~----~~~~~~~~~~~~ 148 (180)
......+..+|++++|+|+...-. ......+... .. .++|.+ +++||+|+.+... .+ ++...+....+.
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 777777889999999999975321 2222233222 22 356765 6899999975322 11 222222222222
Q ss_pred CcceEEEEeeccCCC----------ChHHHHHHHHHHh
Q 030289 149 QRRWYIQAACATSGQ----------GLYEGLDWLSSNV 176 (180)
Q Consensus 149 ~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~ 176 (180)
...++++++|++++. ++.++++.|.+.+
T Consensus 165 ~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 165 GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 345789999999875 4567777776543
No 241
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=5.5e-19 Score=133.77 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=119.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeE---EEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV---ETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
.++.+||+++|+.|+||||||-.|...++++..|..-..+ ..+.-+.+...++|++..+.-+.....-++++|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 3678999999999999999999999888666655332111 2333366679999999887777777788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCCH--hH----HHhHhCCCccCCcceEEEEeeccC
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMSV--SE----VTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
+|+++++++++.+...|..+++... ...+|+|+|+||+|....... +. ++.++... -.+++|||++
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei------EtciecSA~~ 159 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI------ETCIECSALT 159 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH------HHHHhhhhhh
Confidence 9999999999999865555555432 257899999999998764332 22 22222211 1479999999
Q ss_pred CCChHHHHHHHHHHhh
Q 030289 162 GQGLYEGLDWLSSNVS 177 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~ 177 (180)
-.++.++|.+..+++.
T Consensus 160 ~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 160 LANVSELFYYAQKAVI 175 (625)
T ss_pred hhhhHhhhhhhhheee
Confidence 9999999998877653
No 242
>PLN03127 Elongation factor Tu; Provisional
Probab=99.77 E-value=1.3e-17 Score=127.23 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=104.5
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcC------C--c---------c--ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLG------E--I---------V--TTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~------~--~---------~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
.-...+++|+++|+.++|||||+++|.+. . . . +...|++.....+..++.++.++||||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 33577899999999999999999999622 1 0 0 11235555555666677899999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCCH-hHHH----hHhCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMSV-SEVT----DKLGLH 145 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~~-~~~~----~~~~~~ 145 (180)
.|..........+|++++|+|+.+.- ......+..++.. .++| +++++||+|+.+.... +.+. +.+...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~--~~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCC--chhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 88776666777899999999987542 1222222222222 3577 5788999999753221 1121 111111
Q ss_pred ccCCcceEEEEeecc---CCCC-------hHHHHHHHHHHh
Q 030289 146 SLRQRRWYIQAACAT---SGQG-------LYEGLDWLSSNV 176 (180)
Q Consensus 146 ~~~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~~ 176 (180)
.+....++++++|+. ++.| +.++++.+.+.+
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 122235788888876 4555 677787777654
No 243
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=118.62 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC--cccc-ccccceeEEEEEEcCeEEEEEEcCCCCC------C--hhhHHhhcc-
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTT-IPTIGFNVETVEYKNVSFTVWDVGGQDK------I--RPLWRHYFQ- 82 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~------~--~~~~~~~~~- 82 (180)
.-+.|+|.|.||||||||++.+++.+ ..+| ..|.++....+..+...++++||||--. . ......+++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 57899999999999999999999877 3333 2377799999999999999999999221 1 111222222
Q ss_pred ccCEEEEEEECCC--hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 83 NTHGLIFVVDSND--RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 83 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
-.++++|+||.+. ..+++.....+..+... .+.|+++|+||.|..+....+++........ +.....+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~----~~~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEG----GEEPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhc----cccccceeee
Confidence 3688999999975 46788888888888655 3489999999999987666655554422221 1124677777
Q ss_pred CCCChHHHHHHHHHHh
Q 030289 161 SGQGLYEGLDWLSSNV 176 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~ 176 (180)
.+.+++.+-..+....
T Consensus 320 ~~~~~d~~~~~v~~~a 335 (346)
T COG1084 320 KGCGLDKLREEVRKTA 335 (346)
T ss_pred ehhhHHHHHHHHHHHh
Confidence 8888887777776653
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.77 E-value=7.1e-18 Score=127.84 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--ccc----------------------------------cccccceeEEEEEEcCe
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--IVT----------------------------------TIPTIGFNVETVEYKNV 60 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--~~~----------------------------------~~~t~~~~~~~~~~~~~ 60 (180)
+||+++|+.++|||||+++|+... ... ...|++..+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 589999999999999999996432 100 01134455556666788
Q ss_pred EEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHH
Q 030289 61 SFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEV 138 (180)
Q Consensus 61 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~ 138 (180)
++.++||||++.|.......+..+|++++|+|+...-. .....+..+.... ...++++++||+|+.+... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--~qt~~~~~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--EQTRRHSYIASLL--GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--cccHHHHHHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999887666777889999999999875321 1111111222221 2346899999999875221 1222
Q ss_pred HhHhCC--CccCCcceEEEEeeccCCCChHH
Q 030289 139 TDKLGL--HSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 139 ~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
.+.+.. .......++++++||++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 222110 00111246799999999999985
No 245
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.77 E-value=1e-20 Score=124.00 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=125.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..-+|+.|+|.-|+|||+++.+...+. ...|.+|++..+. ..+.+ -+++.+||+.|++++..+..-|++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 456899999999999999999998777 5566778885543 33333 35678999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCCC------HhHHHhHhCCCccCCcceEEEEee
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAMS------VSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.+|||+++.-+++....|..+..+.. ...-+|+++..||||...... .++..++.+. ...+++|
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf-------~gwtets 175 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF-------EGWTETS 175 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc-------cceeeec
Confidence 99999999999999999999887654 334478899999999754221 2223333222 2579999
Q ss_pred ccCCCChHHHHHHHHHHhhh
Q 030289 159 ATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~ 178 (180)
++.+.|++|+...+++.+..
T Consensus 176 ~Kenkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKILV 195 (229)
T ss_pred cccccChhHHHHHHHHHHHh
Confidence 99999999999999988754
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.76 E-value=6.7e-17 Score=125.52 Aligned_cols=113 Identities=20% Similarity=0.238 Sum_probs=81.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccc-----------------------ccccceeEEEEEEcCeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------------IPTIGFNVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------------------~~t~~~~~~~~~~~~~~~~i~D~~ 68 (180)
.+..+|+|+|++++|||||+++|+... .... ..++......+...+..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 567899999999999999999986321 1000 012223345566789999999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
|+..+......+++.+|++++|+|+.+.-. .....++. .... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 998888777778899999999999976311 12233333 3222 4689999999999854
No 247
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.76 E-value=7.9e-17 Score=129.46 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=85.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--c------c-------------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I------V-------------TTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~------~-------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
.++.-||+|+|++++|||||+++|+... . . ....|+......+...+.++.+|||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3556799999999999999999997422 1 0 01224455667777789999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.+......+++.+|++++|+|+.+....+.. ..+... . ..++|+++++||+|+..
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~---~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-N---RYEVPRIAFVNKMDKTG 141 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-H---HcCCCEEEEEECCCCCC
Confidence 8888888999999999999999865333322 222222 2 23688999999999875
No 248
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=1e-16 Score=101.49 Aligned_cols=103 Identities=21% Similarity=0.330 Sum_probs=71.2
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCc--cc--cccccceeEEEEEEcCeEEEEEEcCCCCCCh---------hhHHhhcccc
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEI--VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR---------PLWRHYFQNT 84 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~--~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~ 84 (180)
+|+|+|.+|+|||||+|+|++... .. ...|....+..+...+..+.++||||-..-. ......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 689999999999999999998541 21 2235556566677789999999999954321 1122333789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK 126 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK 126 (180)
|++++|+|.+++.. +...+.+..+ . .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 99999999876311 2222333333 1 57899999998
No 249
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=6.7e-18 Score=123.77 Aligned_cols=153 Identities=19% Similarity=0.209 Sum_probs=107.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC----------------------------------ccccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE----------------------------------IVTTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~----------------------------------~~~~~~t~~~~~~~~~~~ 58 (180)
...+.+++|+|+..+|||||+-+|+..- -++..-|++.....+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4678999999999999999999987421 111223666777778888
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---h--HHHHHHHHHHHhcccccCCCeEEEEEecCCCCC--
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---R--IGEAKDELHRMLSEDELREAVLLVFANKQDLPN-- 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~--~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~-- 131 (180)
++.+.|+|+||+..|-........++|++++|+|+.+.+ . .+.+...+.-+.+.. .-..++++.||+|..+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccC
Confidence 999999999999888888888889999999999998653 1 233333333333322 2345899999999876
Q ss_pred CCCHhHHHhHhC----CCccCCcceEEEEeeccCCCChHH
Q 030289 132 AMSVSEVTDKLG----LHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 132 ~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+...+++..+.. ...+...+++|+++|+..|+|+.+
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222333333222 222333467899999999999864
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.75 E-value=1.6e-17 Score=132.35 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=98.3
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------------------------cccccceeEE
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------------------------TIPTIGFNVE 53 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------------------------~~~t~~~~~~ 53 (180)
+...+..++|+++|++++|||||+++|+... ... ...|++..+.
T Consensus 18 ~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~ 97 (632)
T PRK05506 18 QHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYR 97 (632)
T ss_pred hccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeee
Confidence 3445678999999999999999999998643 110 0113334445
Q ss_pred EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-
Q 030289 54 TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA- 132 (180)
Q Consensus 54 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~- 132 (180)
.+...+.++.++||||++.|.......+..+|++++|+|+...-. ......+. ++... ...++++++||+|+.+.
T Consensus 98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSF-IASLL--GIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHH-HHHHh--CCCeEEEEEEecccccch
Confidence 556677899999999998876666667889999999999975321 11111111 11111 23578999999998742
Q ss_pred -CCHhHHHhHhCC--CccCCcceEEEEeeccCCCChHH
Q 030289 133 -MSVSEVTDKLGL--HSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 133 -~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
...+++..++.. ....-...+++++||++|.|+++
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 112222222210 00011235799999999999874
No 251
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=4.2e-17 Score=113.84 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=77.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--ccc-----------------cccccceeEEEEEEc----------CeEEEEEEcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IVT-----------------TIPTIGFNVETVEYK----------NVSFTVWDVG 68 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~-----------------~~~t~~~~~~~~~~~----------~~~~~i~D~~ 68 (180)
+|+++|+.++|||||+.+|+... ... ...|+......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 79999999999999999997432 100 011332222223332 7889999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
|+..|......+++.+|++++|+|+.+....+. ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999987544332 223333322 357899999999975
No 252
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.73 E-value=9.9e-17 Score=117.88 Aligned_cols=135 Identities=24% Similarity=0.405 Sum_probs=105.4
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 114 (180)
.||+|+....+..++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++....
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3577788888888999999999999999999999999999999999999864 567777888888888877
Q ss_pred cCCCeEEEEEecCCCCCC------------------CCHhHHHhHh-----CCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 115 LREAVLLVFANKQDLPNA------------------MSVSEVTDKL-----GLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~~------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
..+.|+++++||.|+..+ .+.+.....+ .......+.+..+.++|.+-.+++.+|+.
T Consensus 226 ~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~ 305 (317)
T cd00066 226 FANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDA 305 (317)
T ss_pred ccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHH
Confidence 788999999999996431 1122211111 11111245678899999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
+.+.+..+
T Consensus 306 v~~~i~~~ 313 (317)
T cd00066 306 VKDIILQN 313 (317)
T ss_pred HHHHHHHH
Confidence 98887653
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.73 E-value=1.8e-16 Score=109.35 Aligned_cols=160 Identities=18% Similarity=0.110 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccc----ccccceeEEEEEEcCeEEEEEEcCCCCCCh-------hh----HHhh
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PL----WRHY 80 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~----~~~~ 80 (180)
.+|+++|.+|+|||||+|++++.. .... ..|..+........+..+.++||||-.... .. ....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876 2221 235556666666788999999999944321 11 1222
Q ss_pred ccccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC---CccCCcceEEEE
Q 030289 81 FQNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL---HSLRQRRWYIQA 156 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 156 (180)
..+.|++++|+++.+. .......+++...... ..-.++++++|++|...+...++....... ......+-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 3568999999998752 1122333444444322 112468999999998765554443322110 001122223333
Q ss_pred ee-----ccCCCChHHHHHHHHHHhhh
Q 030289 157 AC-----ATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 157 ~S-----a~~~~~i~~~~~~l~~~~~~ 178 (180)
.+ +..+.+++++++.+.+.+.+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 33 45677899999999988876
No 254
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.73 E-value=5.5e-17 Score=123.81 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=105.8
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcc------ccccccceeEEEE-----------------EE-----------
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV------TTIPTIGFNVETV-----------------EY----------- 57 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~------~~~~t~~~~~~~~-----------------~~----------- 57 (180)
....+++|+++|+...|||||+.+|++.... ...-|+...+... ..
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 4567899999999999999999999864411 1112333222211 00
Q ss_pred -----cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 58 -----KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 58 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
....+.++|+||++.|.......+..+|++++|+|+.+...-......+. ++... .-.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCH
Confidence 02478999999999887777777889999999999985321122222222 22221 23468999999999763
Q ss_pred CCHhHHHhHhCCC--ccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 133 MSVSEVTDKLGLH--SLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
...++..++.... .......+++++||++|.|++++++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 3322222221110 00123568999999999999999999987654
No 255
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.73 E-value=1.3e-16 Score=118.05 Aligned_cols=134 Identities=24% Similarity=0.399 Sum_probs=104.1
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 114 (180)
.||+|+....+...+..+.+||++|+...+..|..++.++++++||+|+++. ..+......+..+++...
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 3477788888888999999999999999999999999999999999999863 467788888889888877
Q ss_pred cCCCeEEEEEecCCCCCC-----------------CCHhHHHh----HhC-CCcc-CCcceEEEEeeccCCCChHHHHHH
Q 030289 115 LREAVLLVFANKQDLPNA-----------------MSVSEVTD----KLG-LHSL-RQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~~-----------------~~~~~~~~----~~~-~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
..+.|+++++||.|+..+ .+.+.... .+. .... ..+.+..+.++|.+-.++..+|+.
T Consensus 249 ~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~ 328 (342)
T smart00275 249 FANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDA 328 (342)
T ss_pred ccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHH
Confidence 788999999999996531 11112111 111 1111 235678899999999999999998
Q ss_pred HHHHhhh
Q 030289 172 LSSNVSA 178 (180)
Q Consensus 172 l~~~~~~ 178 (180)
+.+.+.+
T Consensus 329 v~~~I~~ 335 (342)
T smart00275 329 VKDIILQ 335 (342)
T ss_pred HHHHHHH
Confidence 8877764
No 256
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.73 E-value=4.3e-16 Score=114.00 Aligned_cols=76 Identities=29% Similarity=0.425 Sum_probs=53.1
Q ss_pred EEEEcCCCCChHHHHHHhhcCCc-------cccccccceeEEEE-------------------E-EcCeEEEEEEcCCC-
Q 030289 19 ILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETV-------------------E-YKNVSFTVWDVGGQ- 70 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~-------~~~~~t~~~~~~~~-------------------~-~~~~~~~i~D~~G~- 70 (180)
|+++|.++||||||+|+|++... .+..|+.+..+... . ...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998762 22233443332211 0 13368999999997
Q ss_pred ---CCChhhHHh---hccccCEEEEEEECC
Q 030289 71 ---DKIRPLWRH---YFQNTHGLIFVVDSN 94 (180)
Q Consensus 71 ---~~~~~~~~~---~~~~~~~~i~v~d~~ 94 (180)
+++..+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444344 488999999999986
No 257
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=7.8e-17 Score=112.59 Aligned_cols=163 Identities=21% Similarity=0.336 Sum_probs=111.5
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccc-cccccc-eeEEEEEEcCeEEEEEEcCCCCC-------ChhhHH
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVT-TIPTIG-FNVETVEYKNVSFTVWDVGGQDK-------IRPLWR 78 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~-~~~t~~-~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~ 78 (180)
+.....+.+|+++|..|+|||||||+|+.+. ..+ ...+.+ ..+....++...+.+||+||-.+ ++....
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence 4556789999999999999999999999765 222 222333 23334444667899999999554 667788
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----------C--HhHHHh----Hh
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----------S--VSEVTD----KL 142 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----------~--~~~~~~----~~ 142 (180)
.++...|.++++.+..|+. +..-..++.+++.. .-+.+++++.|.+|...+. + ..+... .+
T Consensus 113 d~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRA-LGTDEDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HHhhhccEEEEeccCCCcc-ccCCHHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 8889999999999998764 23334445555433 2347899999999965431 1 111111 11
Q ss_pred CCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 143 GLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
. ..+ +.-.|++.+|.+.+.|++++...+++.+.
T Consensus 190 ~-~~~-q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 G-RLF-QEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred H-HHH-hhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 1 011 11237889999999999999999998865
No 258
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.5e-16 Score=118.85 Aligned_cols=158 Identities=17% Similarity=0.131 Sum_probs=114.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC------------------ccccccccceeEEEEEEcC---eEEEEEEcCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTTIPTIGFNVETVEYKN---VSFTVWDVGGQDK 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------~~~~~~t~~~~~~~~~~~~---~~~~i~D~~G~~~ 72 (180)
++--|+.|+-+...|||||..+|+... ..+...|+......+.+.+ +.+.++|||||..
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 667789999999999999999996321 0112234444444555554 8999999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW 152 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
|..-..+.+.-|+++++|+|+...---+....++..+ ..+..+|.|+||+|++.+ +++++...+... +.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-----e~~L~iIpVlNKIDlp~a-dpe~V~~q~~~l-F~~~~~ 210 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-----EAGLAIIPVLNKIDLPSA-DPERVENQLFEL-FDIPPA 210 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-----HcCCeEEEeeeccCCCCC-CHHHHHHHHHHH-hcCCcc
Confidence 9988888889999999999998654444555555554 246779999999999874 344433322211 112233
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+++.+||++|.|++++++++++.+..
T Consensus 211 ~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred ceEEEEeccCccHHHHHHHHHhhCCC
Confidence 79999999999999999999998753
No 259
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.8e-16 Score=118.73 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=112.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccccc---ccceeEEEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~---t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
.+.+=|+++|+...|||||+-.+-........+ |.-+.-..+... .-.+.++|||||+-|..++.+-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 356779999999999999999987766333222 444444444443 45899999999999999999888899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc----CCcceEEEEeeccCCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL----RQRRWYIQAACATSGQ 163 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 163 (180)
++|+++++.---+... -+ ++....+.|+++..||+|+++ ..++.+..++....+ ......++++||++|+
T Consensus 83 ILVVa~dDGv~pQTiE-AI----~hak~a~vP~iVAiNKiDk~~-~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDGVMPQTIE-AI----NHAKAAGVPIVVAINKIDKPE-ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCCcchhHHH-HH----HHHHHCCCCEEEEEecccCCC-CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998642211111 11 222246899999999999985 344444444332222 2334789999999999
Q ss_pred ChHHHHHHHHHHh
Q 030289 164 GLYEGLDWLSSNV 176 (180)
Q Consensus 164 ~i~~~~~~l~~~~ 176 (180)
|+++++..+.-..
T Consensus 157 Gi~eLL~~ill~a 169 (509)
T COG0532 157 GIDELLELILLLA 169 (509)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887543
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=5.7e-16 Score=115.72 Aligned_cols=164 Identities=20% Similarity=0.180 Sum_probs=108.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCC-C--------hhhHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK-I--------RPLWRHY 80 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~-~--------~~~~~~~ 80 (180)
+...+|+|+|+||+|||||+|.|...+ .+...| |.+.-...++..++++.+.||+|-.+ - -......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 567999999999999999999999887 444444 66677778889999999999999443 1 1124455
Q ss_pred ccccCEEEEEEECC--ChhhHHHHHHHHHHHhcc-----cccCCCeEEEEEecCCCCCCCCHhH--HHhHhCCCccCCcc
Q 030289 81 FQNTHGLIFVVDSN--DRERIGEAKDELHRMLSE-----DELREAVLLVFANKQDLPNAMSVSE--VTDKLGLHSLRQRR 151 (180)
Q Consensus 81 ~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~iiiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~ 151 (180)
+.++|++++|+|+. +-++-..+...+...-.. ....+.+++++.||+|+..+..... ....... ......
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCccc
Confidence 67899999999993 222212222222222111 1224678999999999987521111 1111111 111111
Q ss_pred eEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 152 WYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 152 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
-...++|+.++++++.+...+.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 234569999999999999999887654
No 261
>PRK12739 elongation factor G; Reviewed
Probab=99.70 E-value=7.3e-16 Score=123.91 Aligned_cols=114 Identities=19% Similarity=0.106 Sum_probs=85.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-----c----------------cccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-----I----------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-----~----------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
.++..||+|+|+.++|||||+++|+... . .....|+.....++..++.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3556789999999999999999997421 0 012236666677788899999999999998
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.+...+...++.+|++++|+|+.+.-.-+. ...+... . ..++|.++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~---~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-D---KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCC
Confidence 887788889999999999999976432211 2222222 2 24678999999999875
No 262
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=1e-16 Score=115.54 Aligned_cols=113 Identities=15% Similarity=0.224 Sum_probs=70.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccc-----------cccccceeEEEE--EEcC--eEEEEEEcCCCCCChh---h
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETV--EYKN--VSFTVWDVGGQDKIRP---L 76 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------~~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~~~~---~ 76 (180)
-.|+|+++|++|+|||||+|+|++..... ..+|+....... ..++ .++.+|||||-..... .
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 36899999999999999999999877322 223444433332 2233 6799999999332100 0
Q ss_pred -----------------------HHhhcc--ccCEEEEEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 77 -----------------------WRHYFQ--NTHGLIFVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 77 -----------------------~~~~~~--~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
+...+. ++|+++|+++.+. ..+... ...+..+. ..+|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 101222 4688888888764 222222 23333332 258899999999997
Q ss_pred CCC
Q 030289 131 NAM 133 (180)
Q Consensus 131 ~~~ 133 (180)
+..
T Consensus 157 ~~~ 159 (276)
T cd01850 157 TPE 159 (276)
T ss_pred CHH
Confidence 643
No 263
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2e-15 Score=107.70 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=106.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCeEEEEEEcCCCCCC-------hhhHHhhccccC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWRHYFQNTH 85 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 85 (180)
--.++++|.|.+|||||+++|++.+ ..+|. .|..+....+.+++.++++.|+||--.- ........++||
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 3578999999999999999999877 33332 4666777888999999999999983221 123456678999
Q ss_pred EEEEEEECCChhh-HHHHHHHHHH----------------------------------------Hhccccc---------
Q 030289 86 GLIFVVDSNDRER-IGEAKDELHR----------------------------------------MLSEDEL--------- 115 (180)
Q Consensus 86 ~~i~v~d~~~~~~-~~~~~~~~~~----------------------------------------~~~~~~~--------- 115 (180)
.+++|+|+..... .+.+...+.. +++....
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999974432 3333322211 1111000
Q ss_pred ---------------CCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 116 ---------------REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 116 ---------------~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.=+|.+.|.||.|+......+.+.+.. ..+.+||..+.|++++.+.+.+.+.
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~----------~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP----------NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc----------ceEEEecccCCCHHHHHHHHHHhhC
Confidence 124678899999988744444443332 5799999999999999999998763
No 264
>PRK12740 elongation factor G; Reviewed
Probab=99.68 E-value=1.9e-15 Score=121.40 Aligned_cols=105 Identities=20% Similarity=0.157 Sum_probs=78.7
Q ss_pred EcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh
Q 030289 22 VGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY 80 (180)
Q Consensus 22 ~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 80 (180)
+|+.++|||||+++|+... .. +...|++.....+...+..+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 6999999999999995322 00 12235666667788899999999999998887788889
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+|++++|+|+++....... ..+.... ..++|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~----~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE----KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence 9999999999999875443332 2222222 23688999999999875
No 265
>PRK00007 elongation factor G; Reviewed
Probab=99.68 E-value=1.9e-15 Score=121.45 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=82.5
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--c-------------------cccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I-------------------VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~-------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
.++..||+|+|++++|||||+++|+... . .....|+......+...+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 4556799999999999999999997311 0 011235555566777789999999999998
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.+.......+..+|++++|+|+...-.-+. ...+... . ..++|.++++||+|+..
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~-~---~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQA-D---KYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHH-H---HcCCCEEEEEECCCCCC
Confidence 877667778889999999999875422222 2222222 2 24678899999999875
No 266
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=109.05 Aligned_cols=158 Identities=24% Similarity=0.222 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEE-cCeEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEY-KNVSFTVWDVGGQDKI-------RPLWRHYFQNTHG 86 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ 86 (180)
-|.++|.|++|||||++.++.-+ ...|. .|.-++...+.. ....|.+-|.||--+- -.....-+.+|.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 46799999999999999998766 33332 244556666665 5567999999993322 1113344567999
Q ss_pred EEEEEECCChh---hHHHHHHHHHHHhcc-cccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 87 LIFVVDSNDRE---RIGEAKDELHRMLSE-DELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 87 ~i~v~d~~~~~---~~~~~~~~~~~~~~~-~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
++.|+|++..+ ..+.......++..+ ....+.|.++|+||+|+..+ ...+.+.+.+..... ....++ +|+.+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~--~~~~~~-ISa~t 317 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG--WEVFYL-ISALT 317 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC--CCccee-eehhc
Confidence 99999997543 233333333332222 23467899999999996553 334444444432211 111222 99999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
++|++++...+.+.+.+
T Consensus 318 ~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 318 REGLDELLRALAELLEE 334 (369)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999887765
No 267
>COG2262 HflX GTPases [General function prediction only]
Probab=99.67 E-value=7.7e-15 Score=107.91 Aligned_cols=155 Identities=19% Similarity=0.135 Sum_probs=112.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-c--cccccccceeEEEEEEc-CeEEEEEEcCCCCCC--------hhhHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-I--VTTIPTIGFNVETVEYK-NVSFTVWDVGGQDKI--------RPLWRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~--~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~--------~~~~~~~~ 81 (180)
..-+.|.++|=.++|||||+|+|.+.. . ....+|.++....+... +..+.+-||.|--.- ...+..-.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 456789999999999999999999766 2 23356888888888875 689999999993321 11122233
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
..+|.++.|+|+++++..+.+.....-+. ......+|+++|.||.|+..+.. ...+.... . ..+.+||+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~-el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~--------~-~~v~iSA~ 339 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLA-EIGADEIPIILVLNKIDLLEDEEILAELERGS--------P-NPVFISAK 339 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHH-HcCCCCCCEEEEEecccccCchhhhhhhhhcC--------C-CeEEEEec
Confidence 57999999999999976666655544443 32335699999999999876543 11111110 1 47999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030289 161 SGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~ 178 (180)
+++|++++.+.|.+.+..
T Consensus 340 ~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 340 TGEGLDLLRERIIELLSG 357 (411)
T ss_pred cCcCHHHHHHHHHHHhhh
Confidence 999999999999988763
No 268
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=2e-15 Score=112.51 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=115.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC------------------ccccccccceeEEEEEE-----cCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------IVTTIPTIGFNVETVEY-----KNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~ 70 (180)
.+.-|..|+-+-..|||||..|++... -.+...|+......+.+ +.+.+.++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 445578899999999999999996421 01112233333333333 4588999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC---CHhHHHhHhCCCcc
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM---SVSEVTDKLGLHSL 147 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~---~~~~~~~~~~~~~~ 147 (180)
-.|..-..+.+.-|.++++++|++..-.-+.+.+.+..+- .+.-++-|+||+|++... -..++.+.+++...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~ 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc
Confidence 9987777777788999999999997666677777777662 456799999999998742 23455666666543
Q ss_pred CCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 148 RQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
..+.+||++|.||+++++.+++.+..
T Consensus 162 -----dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 162 -----DAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred -----hheeEecccCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999998764
No 269
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.4e-15 Score=111.14 Aligned_cols=161 Identities=18% Similarity=0.149 Sum_probs=116.2
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCcccc---ccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
..+..+..=|.|+|+...|||||+..|-+...... ..|..+.-.++.. .+..+.+.|||||.-|..++.+-..-.|
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtD 226 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTD 226 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCcccc
Confidence 34446778899999999999999999987663322 2344444444444 6789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc--C--CcceEEEEeeccC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL--R--QRRWYIQAACATS 161 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~ 161 (180)
.+++|+.++|.-.-+ ..+-+. +....++|+++.+||||.+. ..++.+..++..... . .-..+++++||++
T Consensus 227 IvVLVVAadDGVmpQ-T~EaIk----hAk~A~VpiVvAinKiDkp~-a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 227 IVVLVVAADDGVMPQ-TLEAIK----HAKSANVPIVVAINKIDKPG-ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEEccCCccHh-HHHHHH----HHHhcCCCEEEEEeccCCCC-CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 999999998642211 122222 22346899999999999875 455555555443332 1 2356899999999
Q ss_pred CCChHHHHHHHHHHh
Q 030289 162 GQGLYEGLDWLSSNV 176 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~ 176 (180)
|+|++.+-+.+.-..
T Consensus 301 g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 301 GENLDLLEEAILLLA 315 (683)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999988876543
No 270
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.64 E-value=3.2e-15 Score=109.12 Aligned_cols=134 Identities=24% Similarity=0.446 Sum_probs=105.4
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~ 114 (180)
.+|.|+....+.+++..++++|++||..-+.-|.+++.++++++||+++++. ..+.+....+..++++.+
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 5689999999999999999999999988888899999999999999998753 355666778899999988
Q ss_pred cCCCeEEEEEecCCCCCC-----------------CCHhHHHhH----hC-CCccCCcceEEEEeeccCCCChHHHHHHH
Q 030289 115 LREAVLLVFANKQDLPNA-----------------MSVSEVTDK----LG-LHSLRQRRWYIQAACATSGQGLYEGLDWL 172 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~~-----------------~~~~~~~~~----~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (180)
..+.++++++||.|+..+ ...++.... +. +.....+.+.++.++|.+-.+|+.+|+.+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 899999999999998652 111111111 11 11112256778899999999999999999
Q ss_pred HHHhhh
Q 030289 173 SSNVSA 178 (180)
Q Consensus 173 ~~~~~~ 178 (180)
.+.+.+
T Consensus 340 ~d~Ii~ 345 (354)
T KOG0082|consen 340 TDTIIQ 345 (354)
T ss_pred HHHHHH
Confidence 988765
No 271
>PRK13768 GTPase; Provisional
Probab=99.63 E-value=2.9e-15 Score=106.88 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=73.6
Q ss_pred eEEEEEEcCCCCCC---hhhHHhhccc-----cCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 60 VSFTVWDVGGQDKI---RPLWRHYFQN-----THGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 60 ~~~~i~D~~G~~~~---~~~~~~~~~~-----~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
..+.+||+||+.+. +..+..+++. .+++++++|+.......... .++..... ....+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~-~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSV-QLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHH-HHHcCCCEEEEEEhHhhc
Confidence 37999999997653 3333333332 78999999996533222221 22111111 012478999999999998
Q ss_pred CCCCHhHHHhHhCC----------C-------------ccCC--cceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 131 NAMSVSEVTDKLGL----------H-------------SLRQ--RRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 131 ~~~~~~~~~~~~~~----------~-------------~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+..+.+.....+.. . ..++ ...+++++|+.++.|++++++++.+.+..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 76554443332221 0 0111 22478999999999999999999887753
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=1.4e-14 Score=109.03 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcc--cc-ccccceeEEEEE------------------------EcCeEEEEEEcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVE------------------------YKNVSFTVWDVGG 69 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~--~~-~~t~~~~~~~~~------------------------~~~~~~~i~D~~G 69 (180)
++|+++|.|+||||||+|+|++.... .+ ..|+......+. .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999977622 22 123333333222 1236789999999
Q ss_pred C----CCChhhHHhh---ccccCEEEEEEECC
Q 030289 70 Q----DKIRPLWRHY---FQNTHGLIFVVDSN 94 (180)
Q Consensus 70 ~----~~~~~~~~~~---~~~~~~~i~v~d~~ 94 (180)
. .+...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 3333444444 78999999999986
No 273
>PRK09866 hypothetical protein; Provisional
Probab=99.63 E-value=2e-14 Score=111.65 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCCCC-----hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289 60 VSFTVWDVGGQDKI-----RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134 (180)
Q Consensus 60 ~~~~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~ 134 (180)
.++.++||||-... .......+..+|+++||+|..+.-+.. ...+...+... ....|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~--DeeIlk~Lkk~-~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSIS--DEEVREAILAV-GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChh--HHHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence 46889999996542 233455788999999999997642221 12222222221 11259999999999864222
Q ss_pred --HhHHHhHhCCC--ccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 135 --VSEVTDKLGLH--SLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 135 --~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
.+.+....... ........+|++||+.|.|++++.+.+..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33333322111 11112346999999999999999999876
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.62 E-value=1.4e-15 Score=93.81 Aligned_cols=138 Identities=23% Similarity=0.194 Sum_probs=92.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCC----CCCChhhHHhhccccCEEEEEEEC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGG----QDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
|++++|+.|+|||||.+.|-+... .+..|..+.+.. --.+|||| +.++-........++|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~d-------~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFND-------KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh-hhcccceeeccC-------ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 789999999999999999987662 122232222211 12468999 333333344556789999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
+++++. +.--+.. ....|+|-|.+|.|+.++.+.+.....+....+ -++|++|+.++.|++++++++.
T Consensus 75 nd~~s~--f~p~f~~------~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 75 NDPESR--FPPGFLD------IGVKKVIGVVTKADLAEDADISLVKRWLREAGA----EPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred cCcccc--CCccccc------ccccceEEEEecccccchHhHHHHHHHHHHcCC----cceEEEeccCcccHHHHHHHHH
Confidence 887642 1111111 133569999999999986666555544443332 2699999999999999999987
Q ss_pred HH
Q 030289 174 SN 175 (180)
Q Consensus 174 ~~ 175 (180)
..
T Consensus 143 ~~ 144 (148)
T COG4917 143 SL 144 (148)
T ss_pred hh
Confidence 53
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.60 E-value=1.7e-14 Score=116.41 Aligned_cols=113 Identities=20% Similarity=0.094 Sum_probs=79.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC---------------cc----ccccccceeEEE----EEEcCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE---------------IV----TTIPTIGFNVET----VEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~---------------~~----~~~~t~~~~~~~----~~~~~~~~~i~D~~G~ 70 (180)
.+..||+++|+.++|||||+++|+... +. +...|+...... +...+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997421 11 122244433222 4446789999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
..+.......++.+|++++|+|+.+.-..+. ...+.... ..+.|.++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH----HcCCCEEEEEEChhccc
Confidence 9998888899999999999999875322111 12222221 23567889999999864
No 276
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.58 E-value=6.1e-15 Score=104.06 Aligned_cols=115 Identities=14% Similarity=0.025 Sum_probs=57.7
Q ss_pred EEEEEEcCCCCCChhhHHhhc--------cccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 61 SFTVWDVGGQDKIRPLWRHYF--------QNTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 61 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.+.++|||||.++...+.... ...-++++++|+....+- .-+..++..... ....+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 799999999987644433322 234578999997633221 122222222211 1124789999999999987
Q ss_pred CCC---------H-----------hHHHhHhCCCccCCcce-EEEEeeccCCCChHHHHHHHHHHh
Q 030289 132 AMS---------V-----------SEVTDKLGLHSLRQRRW-YIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 132 ~~~---------~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
+.. . ..+...+......-... .++++|+.+++++++++..+-+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 210 0 11111111111111223 799999999999999999987765
No 277
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.57 E-value=2.4e-13 Score=98.15 Aligned_cols=117 Identities=13% Similarity=0.198 Sum_probs=72.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh-------HHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL-------WRHYF 81 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~ 81 (180)
..+.++|+++|.+|+||||++|++++.+. ..... +..........++.++.+|||||....... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 36789999999999999999999998762 22222 222222333457889999999996654222 12222
Q ss_pred --cccCEEEEEEECCC--hhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 82 --QNTHGLIFVVDSND--RERI-GEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 82 --~~~~~~i~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
...|+++||.+++. .... ..+.+.+...+... .-.+.++++|++|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 15899999965542 2211 22233344333221 1245899999999663
No 278
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.57 E-value=5.3e-14 Score=98.90 Aligned_cols=142 Identities=12% Similarity=0.042 Sum_probs=85.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVD 92 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d 92 (180)
.....|+++|++|+|||||++.+.... ........+. +......+.++.++||||.. . ......+.+|++++++|
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVllviD 112 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLLLID 112 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--H-HHHHHHHhcCEEEEEEe
Confidence 556789999999999999999998653 1111111221 11233367889999999854 2 23345678999999999
Q ss_pred CCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-HhHHHhHhCCCcc--CCcceEEEEeeccCCCC
Q 030289 93 SNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VSEVTDKLGLHSL--RQRRWYIQAACATSGQG 164 (180)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~ 164 (180)
++..... ....+...+.. .+.| +++|+||+|+.++.. .++....+..... .-.+.+++.+||+++-.
T Consensus 113 a~~~~~~--~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 113 ASFGFEM--ETFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred cCcCCCH--HHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 8753321 12222222222 3456 455999999874322 2333322221111 11245899999998743
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.56 E-value=1.3e-13 Score=95.00 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=65.5
Q ss_pred eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHhH
Q 030289 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVSE 137 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~~ 137 (180)
.++.++++.|..-.....+ .-+|.++.|+|+.+.+.... ....++ ...-++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 4677888888432222221 12688999999986554321 111111 1223899999999863 33433
Q ss_pred HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+.+..... +.+.++++||+++|+|++++++++.+.+.-
T Consensus 160 ~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 160 MERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 33332221 235789999999999999999999987653
No 280
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.56 E-value=3.7e-14 Score=98.84 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccc----ccccceeEEEEEEcCeEEEEEEcCCCCC--C--hhh---H----Hhh
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDK--I--RPL---W----RHY 80 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~--~--~~~---~----~~~ 80 (180)
.+|+++|.+|+||||++|.+++.. +... ..|..+........+..+.++||||-.. . ... . ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 489999999999999999999887 3322 2255666666678999999999999321 1 111 1 123
Q ss_pred ccccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---CC-ccCCcceEEE
Q 030289 81 FQNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---LH-SLRQRRWYIQ 155 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---~~-~~~~~~~~~~ 155 (180)
..+.|++++|+..... +.-.....++..++..... .-++|+.|..|...+...++..+... +. ..+..+-.++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 3568999999998732 1123334455555543222 23788889998776665544433111 01 1122333455
Q ss_pred Eeecc------CCCChHHHHHHHHHHhhhc
Q 030289 156 AACAT------SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 156 ~~Sa~------~~~~i~~~~~~l~~~~~~~ 179 (180)
..+.. ....+.+++..+-+.+.+.
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55443 2245778888777766554
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.54 E-value=1.5e-13 Score=113.13 Aligned_cols=141 Identities=21% Similarity=0.226 Sum_probs=90.2
Q ss_pred CChHHHHHHhhcCCcccccc---ccceeEEEEEEc------------------CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289 27 AGKTTILYKLKLGEIVTTIP---TIGFNVETVEYK------------------NVSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 27 ~GKStli~~l~~~~~~~~~~---t~~~~~~~~~~~------------------~~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
++||||+.++.+.......+ |..+....+... .-.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 35999999998766433222 333332222221 113899999999999888888888999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC------------------HhHHH-----
Q 030289 86 GLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS------------------VSEVT----- 139 (180)
Q Consensus 86 ~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~------------------~~~~~----- 139 (180)
++++|+|+++. .+++.+ ..+ .. .++|+++++||+|+..... .+++.
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I----~~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI----NIL-RQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH----HHH-HH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999862 322222 222 22 3679999999999864211 01111
Q ss_pred -----hHhCCCc-------cCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 140 -----DKLGLHS-------LRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 140 -----~~~~~~~-------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
...+... -....++++++||++|+||+++..++...
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 0111110 01235689999999999999999888644
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.54 E-value=3.4e-13 Score=95.77 Aligned_cols=119 Identities=9% Similarity=0.056 Sum_probs=75.3
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCccc---c-ccccceeEEEEEEcCeEEEEEEcCCCCCChh---h-------H
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVT---T-IPTIGFNVETVEYKNVSFTVWDVGGQDKIRP---L-------W 77 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~ 77 (180)
.....++|+++|.+|||||||+|+|++..... . ..|...........+.++.+|||||-..... . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 44678999999999999999999999876221 1 1244444444455788999999999654411 1 2
Q ss_pred Hhhcc--ccCEEEEEEECCChh-hH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 78 RHYFQ--NTHGLIFVVDSNDRE-RI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 78 ~~~~~--~~~~~i~v~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
..++. ..|++++|..++... .. ..+.+.+....... .-.++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCCC
Confidence 22333 468888887665321 11 13334444443321 11458999999997643
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.54 E-value=4.8e-14 Score=103.48 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH---
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--- 135 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--- 135 (180)
+..+.++||+|....... ....+|.++++.+....+.++....-...+ .-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~---------aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKGIMEL---------ADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhhhhhh---------hheEEeehhcccchhHHHHH
Confidence 578999999996633322 456799999998765556555544322222 13899999998764332
Q ss_pred -hHHHhHhCCCccC--CcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 136 -SEVTDKLGLHSLR--QRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 136 -~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.++...+...... ....+++.+|+.++.|++++++.+.+.+.
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2333343332111 12247999999999999999999988653
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.53 E-value=1.9e-13 Score=101.94 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC--ccccc-----------------cccceeEEEEEEcCeEEEEEEcCCCCCChh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE--IVTTI-----------------PTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-----------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 75 (180)
+--||+||-+...|||||+..|+.+. +.+.. .|+-..-..+.+.++.+.|+|||||-.|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 44589999999999999999998654 32221 122233345677889999999999999998
Q ss_pred hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCc--cCCc
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHS--LRQR 150 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~--~~~~ 150 (180)
-.++.+.-.|++++++|+... ........+...+. .+.+-|+|+||+|.+..+. +++..+.+.... -.++
T Consensus 84 EVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 899999999999999999742 22334444444443 3455688899999887543 222222222111 2456
Q ss_pred ceEEEEeeccCCC----------ChHHHHHHHHHHhhh
Q 030289 151 RWYIQAACATSGQ----------GLYEGLDWLSSNVSA 178 (180)
Q Consensus 151 ~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~ 178 (180)
.+|++..|+++|. ++.-+|+.|++.+..
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 7899999998764 688899988887654
No 285
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=107.74 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=117.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCeEEEEEEcCCCCCC----hhh----H-Hhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNVSFTVWDVGGQDKI----RPL----W-RHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~----~-~~~~ 81 (180)
.+.-..++.|-|++|||||+|.+.... ...|. .|.++....+.+.-..++++||||--.. +.. . -...
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 446688999999999999999998766 33332 4556666777777788999999992211 111 1 1111
Q ss_pred cccCEEEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 82 QNTHGLIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
.--.+|+|+.|++.. .+++...+.++.+... ..+.|.|+|+||+|+....++++-.+++-.......+++++.+|.
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 223578999999864 5777777777777543 467899999999999887777665544443333445689999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
.+.+|+-++....++.+..
T Consensus 324 ~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLA 342 (620)
T ss_pred cchhceeeHHHHHHHHHHH
Confidence 9999999888877777654
No 286
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.52 E-value=2.6e-13 Score=97.15 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhcccc----CE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNT----HG 86 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~ 86 (180)
..-+|+++|+.|+||||||.+|-+.+........++.+-.+.- +..++.+|-..|+.....+....+.-. -.
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 3678999999999999999999988855544555555544433 335789999999877766666666533 35
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHhccccc--------------------------------------------------
Q 030289 87 LIFVVDSNDRE-RIGEAKDELHRMLSEDEL-------------------------------------------------- 115 (180)
Q Consensus 87 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~-------------------------------------------------- 115 (180)
+|++.|.+++. -++.+..|...+..+...
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 78889999883 345555554433221100
Q ss_pred ----------CCCeEEEEEecCCCCCC----C-----CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 116 ----------REAVLLVFANKQDLPNA----M-----SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 116 ----------~~~~iiiv~nK~D~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
-++|+++|++|||.... - ..+-+...+ ..++-.++...+.+|+++..|++-+..+|.+.+
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l-RkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL-RKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH-HHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 35689999999998431 1 111122222 233345788899999999999999999999876
Q ss_pred h
Q 030289 177 S 177 (180)
Q Consensus 177 ~ 177 (180)
.
T Consensus 290 y 290 (473)
T KOG3905|consen 290 Y 290 (473)
T ss_pred c
Confidence 4
No 287
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.52 E-value=9.1e-14 Score=100.34 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=102.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC------------------------------------ccccccccceeEEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------------------------IVTTIPTIGFNVETVEY 57 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------------------------~~~~~~t~~~~~~~~~~ 57 (180)
+...+.+..|...-||||||-||+... ..+...|+++.|.-|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 446789999999999999999997521 01112377777888888
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CH
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SV 135 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~ 135 (180)
.+.+|.+-|||||++|-.....-..-||++|+++|+. ..+.+...-+..+.+.. .-.-+++..||+|+.+-. ..
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLL--GIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLL--GIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHh--CCcEEEEEEeeecccccCHHHH
Confidence 9999999999999998777666677799999999994 44444444444443332 224588999999998632 23
Q ss_pred hHHHhHhCCC--ccCCcceEEEEeeccCCCChH
Q 030289 136 SEVTDKLGLH--SLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 136 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+++...+... .+.-....+++.||..|+||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3333322110 011122379999999999975
No 288
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.7e-13 Score=101.58 Aligned_cols=154 Identities=17% Similarity=0.065 Sum_probs=111.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC------ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
.|+..|+--.|||||+..+.+.. ......|++..+......+..+.++|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 57888999999999999998765 112234777777777777789999999999998888888888999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
+.++. +......+..++... ...-.++|+||+|..++...++..+.+..... -...++|.+|+.+|+||+++.++
T Consensus 82 ~~deG--l~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEG--LMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccC--cchhhHHHHHHHHhc--CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHH
Confidence 99632 222222222233322 22347999999999886554444333222211 34557899999999999999999
Q ss_pred HHHHh
Q 030289 172 LSSNV 176 (180)
Q Consensus 172 l~~~~ 176 (180)
|.+..
T Consensus 157 l~~L~ 161 (447)
T COG3276 157 LIDLL 161 (447)
T ss_pred HHHhh
Confidence 99887
No 289
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.4e-14 Score=106.37 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=110.5
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcC--------------------C--------------ccccccccceeEEE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLG--------------------E--------------IVTTIPTIGFNVET 54 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~--------------------~--------------~~~~~~t~~~~~~~ 54 (180)
++..+..+.+.+++|+..+|||||+-+++.. + -++..-|+++....
T Consensus 170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~ 249 (603)
T KOG0458|consen 170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW 249 (603)
T ss_pred cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence 4556678999999999999999999888641 0 11112245555556
Q ss_pred EEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh---hhH--HHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289 55 VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERI--GEAKDELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 55 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
|......+.+.|.||+..|-.....-..++|++++|+|++.. ..| .+....+..+++... -..+++++||.|+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~ 327 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDL 327 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccc
Confidence 666778899999999998887777788899999999999742 122 222334444444432 4568999999998
Q ss_pred CC--CCCHhHHHhHhC-----CCccCCcceEEEEeeccCCCChHHH
Q 030289 130 PN--AMSVSEVTDKLG-----LHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 130 ~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
.+ +...+++...+. ...+....+.|++||+.+|+|+...
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 65 333555554432 3344566778999999999997644
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.49 E-value=1.7e-13 Score=95.96 Aligned_cols=166 Identities=17% Similarity=0.178 Sum_probs=98.5
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcC----Cccccccccc------------------------------eeEEEE
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLG----EIVTTIPTIG------------------------------FNVETV 55 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~----~~~~~~~t~~------------------------------~~~~~~ 55 (180)
+...+++.-|+++|..|+||||+++||... ..+.|....+ ++-..+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 346678889999999999999999999631 1222211111 110000
Q ss_pred E-------------------EcCeEEEEEEcCCCCCC------hhh-HHhhc-cccCEEEEEEECCC---hhhHHHHHHH
Q 030289 56 E-------------------YKNVSFTVWDVGGQDKI------RPL-WRHYF-QNTHGLIFVVDSND---RERIGEAKDE 105 (180)
Q Consensus 56 ~-------------------~~~~~~~i~D~~G~~~~------~~~-~~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~ 105 (180)
. ....++.++|||||.+. ... +..+. ...-+++|++|... +-+|-.---+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 0 02246899999997653 111 22221 12356788888653 3333332333
Q ss_pred HHHHhcccccCCCeEEEEEecCCCCCCCCHhHH-------HhHhCCC---cc-------------CCcceEEEEeeccCC
Q 030289 106 LHRMLSEDELREAVLLVFANKQDLPNAMSVSEV-------TDKLGLH---SL-------------RQRRWYIQAACATSG 162 (180)
Q Consensus 106 ~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~-------~~~~~~~---~~-------------~~~~~~~~~~Sa~~~ 162 (180)
.-.++. ..+.|++++.||+|+....-..++ .+.+... .. .-.++..+-||+.+|
T Consensus 173 AcSily---ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILY---KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHH---hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 333333 368899999999999874322222 2222210 00 013567899999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.|.+++|..+-+.+.+
T Consensus 250 ~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 250 EGFDDFFTAVDESVDE 265 (366)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 9999999998877654
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.49 E-value=3.9e-13 Score=110.18 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=82.8
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-c-c----------cc-------ccccceeEEEEEE--------
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-I-V----------TT-------IPTIGFNVETVEY-------- 57 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~-~----------~~-------~~t~~~~~~~~~~-------- 57 (180)
|.++.+. +++..||+|+|+.++|||||+++|+... . . .+ ..|+......+.+
T Consensus 9 ~~~~~~~-~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~ 87 (843)
T PLN00116 9 LRRIMDK-KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLK 87 (843)
T ss_pred HHHHhhC-ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccc
Confidence 4445444 5678899999999999999999997533 0 0 00 1122222222222
Q ss_pred --------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289 58 --------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 58 --------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
.+..+.++||||+..|.......++.+|++++|+|+...-..+. ...+.... ..++|.++++||+|.
T Consensus 88 ~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~----~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 88 DFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GERIRPVLTVNKMDR 162 (843)
T ss_pred ccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHH----HCCCCEEEEEECCcc
Confidence 25778999999999998888888999999999999985432222 22333332 247899999999998
Q ss_pred C
Q 030289 130 P 130 (180)
Q Consensus 130 ~ 130 (180)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 292
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.47 E-value=1.1e-13 Score=96.70 Aligned_cols=149 Identities=18% Similarity=0.222 Sum_probs=93.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC------C--cccccc---------------------ccceeEEEEEE--------
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG------E--IVTTIP---------------------TIGFNVETVEY-------- 57 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~~---------------------t~~~~~~~~~~-------- 57 (180)
+.+.|.|.|+||+|||||+++|... + .....| .-++.+...-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 6789999999999999999998531 1 000001 11133333322
Q ss_pred ------------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEe
Q 030289 58 ------------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFAN 125 (180)
Q Consensus 58 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~n 125 (180)
-++++.+++|.|--+..-. ...-+|.+++|..+.-.+.++.++.-+.++. -++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia---------Di~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEIA---------DIFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhhc---------cEEEEe
Confidence 2478999999985543322 3355999999999887788888887777762 289999
Q ss_pred cCCCCCCC-CHhHHHhHhCCCccCCc--ceEEEEeeccCCCChHHHHHHHHHH
Q 030289 126 KQDLPNAM-SVSEVTDKLGLHSLRQR--RWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 126 K~D~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
|+|..... ...++...+.+..-... ..+++.|||.++.|++++++.+.+.
T Consensus 176 KaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 176 KADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp --SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 99955422 23344444433222222 3489999999999999999998875
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=99.47 E-value=4.6e-13 Score=109.63 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC--cc----------cc-------ccccceeEEEEEEc--------
Q 030289 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE--IV----------TT-------IPTIGFNVETVEYK-------- 58 (180)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------~~-------~~t~~~~~~~~~~~-------- 58 (180)
.++.+. +++.-||+|+|+.++|||||+++|+... .. ++ ..|+......+.+.
T Consensus 10 ~~~~~~-~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (836)
T PTZ00416 10 REIMDN-PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDD 88 (836)
T ss_pred HHHhhC-ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccC
Confidence 334344 3556699999999999999999998532 10 00 11222222222332
Q ss_pred --CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 59 --NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 59 --~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
+..+.++||||+..+.......++.+|++++|+|+.+.-..+ ....+..... .++|+++++||+|+.
T Consensus 89 ~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 89 KQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred CCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 567999999999999888888999999999999987642222 2233333322 357999999999986
No 294
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.46 E-value=1.5e-12 Score=99.54 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=106.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE------cCeEEEEEEcCCCCCChhhHHhhcccc----
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY------KNVSFTVWDVGGQDKIRPLWRHYFQNT---- 84 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~---- 84 (180)
..-+|+|+|..++|||||+.+|.+.+. ..++.+..|.-+++ +...+.+|-..|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 457899999999999999999976553 34555555544444 224689999999877777777666643
Q ss_pred CEEEEEEECCChhhH-HHHHHHHH----------------------------HHhccc--c-------------------
Q 030289 85 HGLIFVVDSNDRERI-GEAKDELH----------------------------RMLSED--E------------------- 114 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~-~~~~~~~~----------------------------~~~~~~--~------------------- 114 (180)
-.+++|+|.+.|..+ +.+..|+. .+.... .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 358999999876433 22222211 110000 0
Q ss_pred ------------cCCCeEEEEEecCCCCCC---------CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 115 ------------LREAVLLVFANKQDLPNA---------MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 115 ------------~~~~~iiiv~nK~D~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
.-++|++||++|+|.... ...+-+.+.+ ..++-.+++.+|.||++...|++.++.+|.
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~L-R~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYL-RTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHH-HHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 014799999999996431 1122222222 233446788999999999999999999998
Q ss_pred HHhhh
Q 030289 174 SNVSA 178 (180)
Q Consensus 174 ~~~~~ 178 (180)
+.+..
T Consensus 261 h~l~~ 265 (472)
T PF05783_consen 261 HRLYG 265 (472)
T ss_pred HHhcc
Confidence 88764
No 295
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.45 E-value=4.2e-13 Score=101.67 Aligned_cols=130 Identities=25% Similarity=0.432 Sum_probs=98.3
Q ss_pred ccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh----------hhHHHHHHHHHHHhccccc
Q 030289 47 TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR----------ERIGEAKDELHRMLSEDEL 115 (180)
Q Consensus 47 t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~ 115 (180)
|.|+....+.+ .+..++++|++|+..-+.-|..++.++++++||+++++. ..+.+....+..+++....
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 67777888888 999999999999988889999999999999999997632 4577888889999998888
Q ss_pred CCCeEEEEEecCCCCC-----C---------------CCHhHHHhH-----hCCCccCC--cceEEEEeeccCCCChHHH
Q 030289 116 REAVLLVFANKQDLPN-----A---------------MSVSEVTDK-----LGLHSLRQ--RRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 116 ~~~~iiiv~nK~D~~~-----~---------------~~~~~~~~~-----~~~~~~~~--~~~~~~~~Sa~~~~~i~~~ 168 (180)
.+.|+++++||.|+.. . .+.+...+. ........ +.+.++.|+|.+..++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 8999999999999532 1 112222111 11111112 6678899999999999999
Q ss_pred HHHHHHHh
Q 030289 169 LDWLSSNV 176 (180)
Q Consensus 169 ~~~l~~~~ 176 (180)
|..+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 99887653
No 296
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.44 E-value=2.8e-13 Score=86.47 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=78.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccc-cc-cccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVT-TI-PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
+|++++|..|+|||+|+.++....+.. +. +|.+ +......+.+.++.++.|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 589999999999999999997666432 22 3333 3333455677889999999999
Q ss_pred ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+.++++.. |...+... ...+.|.++++||.|+.++... ... ....++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~---~~~--------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQV---ATE--------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcC---CHH--------HHHHHHHHhCCCcchhh
Confidence 88887655 65555433 2357889999999998542211 111 11246788999999874
No 297
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=3.3e-13 Score=92.19 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=105.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC----ccccccccceeEEEEEE-cCeEEEEEEcCCCCCC-----hhhHHhhccccC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE----IVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----RPLWRHYFQNTH 85 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~ 85 (180)
.-||+++|.+|+||||+=..++.+- .....+|+++....+++ ++..+.+||++|++.+ .......+++.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 5689999999999999876665433 45556788999988888 5589999999998843 223456677899
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh---HhCCCccCCcceEEEEeec
Q 030289 86 GLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD---KLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 86 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa 159 (180)
++++|||++..+ .+....+.++.++.+ .+...+.+..+|.|+......+++.+ ..-.......+..+|++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999998653 333344455555544 35667889999999987544333221 1111112234567888887
Q ss_pred cCCCChHHHHHHHHHH
Q 030289 160 TSGQGLYEGLDWLSSN 175 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~ 175 (180)
.+. .+-.+|..+...
T Consensus 162 wDe-tl~KAWS~iv~~ 176 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYN 176 (295)
T ss_pred hhH-HHHHHHHHHHHh
Confidence 763 344445544433
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=4.8e-12 Score=93.88 Aligned_cols=113 Identities=19% Similarity=0.239 Sum_probs=84.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccc-----------------------ccccceeEEEEEEcCeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-----------------------IPTIGFNVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-----------------------~~t~~~~~~~~~~~~~~~~i~D~~ 68 (180)
.++-..+||.+|.+|||||.++|+... +... ...+.....++.+.+..+.+.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 345567899999999999999986311 1110 112223456677799999999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
||+.+..-+-+-+.-+|.++.|+|+. ..++.....+..+++. +++||+-++||.|-..
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~KLfeVcrl---R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTLKLFEVCRL---RDIPIFTFINKLDREG 147 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecc--cCccHHHHHHHHHHhh---cCCceEEEeecccccc
Confidence 99999877777788899999999986 4455555555566654 7899999999999654
No 299
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.43 E-value=3.7e-13 Score=99.66 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=78.5
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccce-----eEEEEEE-cCeEEEEEEcCCCCCChhhHHhhc---
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF-----NVETVEY-KNVSFTVWDVGGQDKIRPLWRHYF--- 81 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~-----~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~--- 81 (180)
....+++|+|+|.+|+|||||||+|.+-... +..+.+|+ ....+.. ..-.+.+||.||..........|+
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 4567899999999999999999999763311 11122211 1122222 223699999999543333333443
Q ss_pred --cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC--C-----CCC--CHhHHHhHhC---CCcc
Q 030289 82 --QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL--P-----NAM--SVSEVTDKLG---LHSL 147 (180)
Q Consensus 82 --~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~--~-----~~~--~~~~~~~~~~---~~~~ 147 (180)
...|.+|++.+- .+....-++..-+.. .+.|+.+|-+|+|. . .+. ..++..+..+ ...+
T Consensus 111 ~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 467887777653 243444333333333 47889999999994 1 111 1112211111 1111
Q ss_pred CC---cceEEEEeeccCCC--ChHHHHHHHHHHhhh
Q 030289 148 RQ---RRWYIQAACATSGQ--GLYEGLDWLSSNVSA 178 (180)
Q Consensus 148 ~~---~~~~~~~~Sa~~~~--~i~~~~~~l~~~~~~ 178 (180)
+. ...++|.+|+.+-. +...+.+.+.+.+..
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 11 23479999988754 466777777766554
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.41 E-value=9.8e-12 Score=91.04 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=64.8
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHH
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEV 138 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~ 138 (180)
++++.++||+|.-.. .......+|.++++......+.+.... ..+ .++|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~el~~~~---~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDDLQGIK---AGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHHHHHHH---HHH------hhhccEEEEEcccccchhHHHHH
Confidence 578999999995422 223456678888886544333333322 222 24567999999998764332211
Q ss_pred HhH----hCC--CccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 139 TDK----LGL--HSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 139 ~~~----~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
... +.. ........+++++|++++.|++++++++.+.+
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 111 111 10011123699999999999999999998864
No 301
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=1.4e-12 Score=105.73 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=77.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cc----------cc-------ccccceeEEEEEE----cCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV----------TT-------IPTIGFNVETVEY----KNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~----------~~-------~~t~~~~~~~~~~----~~~~~~i~D~~G~ 70 (180)
.+.-+|+++|+.++|||||+++|+... .. ++ ..|+......+.+ ++..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 556789999999999999999997532 11 00 1133333223322 4788999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
..+.......++.+|++++|+|+...-.. .....+..... .+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~-~t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMP-QTETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCc-cHHHHHHHHHH----cCCCeEEEEECchhh
Confidence 99988888899999999999998754221 22222332222 245779999999975
No 302
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.41 E-value=3.5e-12 Score=90.62 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=76.0
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhH
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSE 137 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~ 137 (180)
++.+.|++|.|--+..-. ...-+|.++++.-+.-.+.++.++.-+.++. -++|+||.|..... ...+
T Consensus 143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia---------Di~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKAGIMEIA---------DIIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHhhhhhhh---------heeeEeccChhhHHHHHHH
Confidence 468999999986544433 2244899999988877888888888877773 28999999965432 1223
Q ss_pred HHhHhCCCc--cCCcc--eEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 138 VTDKLGLHS--LRQRR--WYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 138 ~~~~~~~~~--~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+...+.+.. +...+ .+++.|||.+|+|++++|+.+.+...
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 344444332 33333 38999999999999999999987653
No 303
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=7.3e-12 Score=86.39 Aligned_cols=162 Identities=19% Similarity=0.217 Sum_probs=108.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEEcCeEEEEEEcCCCCCChh---hHHhhccccCEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP---LWRHYFQNTHGLI 88 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~i 88 (180)
+.+|+++|...+||||+..-.+.+..+. ..+|..+....+...-+.+.+||.|||-.+-. -....++++.+.+
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 3669999999999999987777655221 12344444444444557899999999876522 2667889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhc-ccccCCCeEEEEEecCCCCCCCC-------Hh-HHHhHhCCCccCCcceEEEEeec
Q 030289 89 FVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANKQDLPNAMS-------VS-EVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~D~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+|+|+.+.. .+.+.....-+.+ ..-.+++.+-+.++|.|...+.- .. ...+.+......+.++.|+.+|-
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999997542 2333333333322 23468899999999999766321 11 11223333344566788999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030289 160 TSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (180)
++. +|-|+|..+++.+..+
T Consensus 186 yDH-SIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIPQ 204 (347)
T ss_pred cch-HHHHHHHHHHHHHhhh
Confidence 986 6999999999887643
No 304
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.39 E-value=2.3e-12 Score=93.11 Aligned_cols=117 Identities=19% Similarity=0.326 Sum_probs=68.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCccccc-----------cccceeEEEEEE----cCeEEEEEEcCCCCCC---hhh-
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI-----------PTIGFNVETVEY----KNVSFTVWDVGGQDKI---RPL- 76 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----------~t~~~~~~~~~~----~~~~~~i~D~~G~~~~---~~~- 76 (180)
+|+|+|+|.+|+|||||||.|++....... .+..+....+.. ..+.+.++||||-... ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999986622111 122333333333 3467899999992211 000
Q ss_pred ----------HHhhc-------------cccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 77 ----------WRHYF-------------QNTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 77 ----------~~~~~-------------~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
...++ .+.|+++|+++++. ..+..++ ..+..+ . ..+++|.|+.|+|...+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIEFMKRL-S----KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHHHHHHh-c----ccccEEeEEecccccCH
Confidence 01111 14689999999864 2233333 344444 2 35779999999998875
Q ss_pred CCHhHH
Q 030289 133 MSVSEV 138 (180)
Q Consensus 133 ~~~~~~ 138 (180)
.++..+
T Consensus 158 ~el~~~ 163 (281)
T PF00735_consen 158 EELQAF 163 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.38 E-value=1e-11 Score=83.57 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=42.7
Q ss_pred EEEEEEcCCCC----CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289 61 SFTVWDVGGQD----KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127 (180)
Q Consensus 61 ~~~i~D~~G~~----~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~ 127 (180)
.+.++||||-. .....+..++..+|++++|.++++..+-.....+.... .. .....++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 58999999942 23466888889999999999998755444444443333 32 233389999984
No 306
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=3.3e-12 Score=88.85 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=83.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-c-cc-----ccc----------ccceeEEEEE--------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-I-VT-----TIP----------TIGFNVETVE-------------------- 56 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~-~~-----~~~----------t~~~~~~~~~-------------------- 56 (180)
.....|+|+|+.|+|||||++++.... . .. ... ..+.....+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 446778899999999999999997431 0 00 000 0000100000
Q ss_pred EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--
Q 030289 57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-- 134 (180)
Q Consensus 57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-- 134 (180)
..+..+.++++.|.-.... .+....+..+.|+|+.+.+... ... . .....|.++++||+|+.+...
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~-~------~~~~~a~iiv~NK~Dl~~~~~~~ 167 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKY-P------GMFKEADLIVINKADLAEAVGFD 167 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhh-H------hHHhhCCEEEEEHHHccccchhh
Confidence 0134677888877211111 1112345556777776543211 111 0 112456799999999975322
Q ss_pred HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
..+....+... ....+++++|++++.|++++++++.+.
T Consensus 168 ~~~~~~~l~~~---~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKI---NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33333322211 134689999999999999999999875
No 307
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.37 E-value=3.1e-12 Score=90.94 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCChhhHHhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-HHHhHhCCCcc
Q 030289 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS-EVTDKLGLHSL 147 (180)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~-~~~~~~~~~~~ 147 (180)
.+++..+.+.++.++|++++|+|+.++. ++..+..|+..... .++|+++|+||+|+.++.... +....+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~----- 93 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY----- 93 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----
Confidence 3677777888999999999999999877 88899998875532 578999999999997543322 222222
Q ss_pred CCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 148 RQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
...+.+++++||++|.|++++|+.+.+
T Consensus 94 ~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 RNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 234568999999999999999998764
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.4e-12 Score=92.06 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=103.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc------cccccceeEEE--------------EEE------------cCeE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT------TIPTIGFNVET--------------VEY------------KNVS 61 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~------~~~t~~~~~~~--------------~~~------------~~~~ 61 (180)
+...||.++|+...|||||..+|++--... ..-|+...|.. +.. --..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 568999999999999999999998632110 01111111110 000 0146
Q ss_pred EEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhH
Q 030289 62 FTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSE 137 (180)
Q Consensus 62 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~ 137 (180)
++++|.|||+-+-.....-..-.|++++|++++.+.......+.+..+ ... .-..++++-||.|+.+... .++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999755544444444469999999999876655555554443 221 2245899999999987432 223
Q ss_pred HHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 138 VTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+.+...-. -..+.|++++||..+.||+-++++|.+.+..
T Consensus 165 Ik~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 165 IKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 33322211 1345699999999999999999999987753
No 309
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.1e-11 Score=88.23 Aligned_cols=158 Identities=20% Similarity=0.174 Sum_probs=96.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC----------ccccccccceeEEEEEE---------cCeEEEEEEcCCCCCCh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE----------IVTTIPTIGFNVETVEY---------KNVSFTVWDVGGQDKIR 74 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~----------~~~~~~t~~~~~~~~~~---------~~~~~~i~D~~G~~~~~ 74 (180)
...+|+.++|+..+|||||..+|..-. ..+...|.+..+..+.. +..++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 446999999999999999999996422 22223355555555544 45688999999986443
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHhHhC--CCcc
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTDKLG--LHSL 147 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~~~~--~~~~ 147 (180)
.......+-.|..++|+|+.....-+...- .+-+++ -...++|+||.|...+.. .++...... +...
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 333333344588999999974321111111 111221 123688889998765422 222222211 1111
Q ss_pred -CCcceEEEEeeccCC----CChHHHHHHHHHHhh
Q 030289 148 -RQRRWYIQAACATSG----QGLYEGLDWLSSNVS 177 (180)
Q Consensus 148 -~~~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~ 177 (180)
...+.|++++|+..| +.|.|+.+.+.+++-
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 233579999999999 667777776666553
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.28 E-value=2e-11 Score=81.83 Aligned_cols=144 Identities=19% Similarity=0.101 Sum_probs=82.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcccccc---c---------------cceeEEEEEE---------------------
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIP---T---------------IGFNVETVEY--------------------- 57 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~---t---------------~~~~~~~~~~--------------------- 57 (180)
+.|.|.|++|||||+|+.+++..-..++.. + .+.....+..
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 789999999999999999886422111100 0 1111111111
Q ss_pred -cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhc-ccccCCCeEEEEEecCCCCCCCC-
Q 030289 58 -KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLS-EDELREAVLLVFANKQDLPNAMS- 134 (180)
Q Consensus 58 -~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~D~~~~~~- 134 (180)
.+..+.+++..|. ....-.+.-..+.-++|+|++..+. . ... .+.... .-++|+||.|+.+...
T Consensus 94 ~~~~Dll~iEs~GN---L~~~~sp~L~d~~~v~VidvteGe~--~-------P~K~gP~i~~-aDllVInK~DLa~~v~~ 160 (202)
T COG0378 94 FPDLDLLFIESVGN---LVCPFSPDLGDHLRVVVIDVTEGED--I-------PRKGGPGIFK-ADLLVINKTDLAPYVGA 160 (202)
T ss_pred CCcCCEEEEecCcc---eecccCcchhhceEEEEEECCCCCC--C-------cccCCCceeE-eeEEEEehHHhHHHhCc
Confidence 1135666676661 1111122223347889999875432 0 011 111112 4589999999987443
Q ss_pred -HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 135 -VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 135 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
++.....-... ..+.+|+++|.++|+|++++++++....
T Consensus 161 dlevm~~da~~~---np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEV---NPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHh---CCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 33332221111 2356899999999999999999987654
No 311
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.27 E-value=3e-10 Score=87.10 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=104.4
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccc-cccccc----eeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG----FNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN 83 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~~~t~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 83 (180)
++...++-|.+.++|+.++|||.+++.|.++.... +..+.. ++...+..+...+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 55667889999999999999999999999876333 222332 222222234445566666543 222222212 66
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-----CCHhHHHhHhCCCccCCcceEEEEee
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-----MSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
||++.++||++++.+++.....+...... .+.|+++|++|+|+.+. ...++++.++++... +..|
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P-------~~~S 565 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPP-------IHIS 565 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCC-------eeec
Confidence 99999999999999999988877765433 68999999999998663 235667777666532 4455
Q ss_pred ccCCCChHHHHHHHHHHh
Q 030289 159 ATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~ 176 (180)
..+..+ .++|..|..+.
T Consensus 566 ~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 566 SKTLSS-NELFIKLATMA 582 (625)
T ss_pred cCCCCC-chHHHHHHHhh
Confidence 553333 78888877654
No 312
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.7e-11 Score=94.25 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=101.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc--cc---cccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT--TI---PTIGFNVETVE----------------YKNVSFTVWDVGGQDK 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~--~~---~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 72 (180)
-+..-|||+|+..+|||-|+..+.+..... .. ..+|..+.... ++---+.++||||++.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 355679999999999999998887543111 11 12222222211 1223578999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCCh---hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC-----C-CCH--------
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDR---ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN-----A-MSV-------- 135 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~-----~-~~~-------- 135 (180)
|..++.+....||.+|+|+|+.+. .+++.+. +++ .++.|+|+.+||.|-.- + ...
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 999999999999999999999642 2222221 122 25789999999999431 1 010
Q ss_pred -----------hHHHhHhCCCcc------CC----cceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 136 -----------SEVTDKLGLHSL------RQ----RRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 136 -----------~~~~~~~~~~~~------~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
..+...+..+.+ .+ .-+.++++||.+|+||-+++.+|++...
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 111111111111 11 1347899999999999999999988754
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.3e-11 Score=87.47 Aligned_cols=159 Identities=19% Similarity=0.145 Sum_probs=100.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC-------C----------ccc--cccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG-------E----------IVT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~-------~----------~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (180)
...+.||..+|+...|||||..+++.. . +.+ ...|+......+...+..+.-+|+||+-.|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 457899999999999999999877521 0 111 122566666677778899999999999988
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCC-eEEEEEecCCCCCCCCHhHHHh-----HhCCCcc
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-VLLVFANKQDLPNAMSVSEVTD-----KLGLHSL 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~iiiv~nK~D~~~~~~~~~~~~-----~~~~~~~ 147 (180)
-+....-.-+.|++|+|+++.+..-- +... .++-.. .-++ .+++++||+|+.++.++-++.. .+..-.+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmP-qTrE---HiLlar-qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMP-QTRE---HILLAR-QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCC-cchh---hhhhhh-hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 77766677789999999999863211 1111 111111 1234 5778889999998655433322 2222223
Q ss_pred CCcceEEEEeeccCCC--------ChHHHHHHHHHHh
Q 030289 148 RQRRWYIQAACATSGQ--------GLYEGLDWLSSNV 176 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~~ 176 (180)
..-..|++.-|+..-- .|.++++.+-+.+
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 3345578777765321 2455555554443
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.27 E-value=1.1e-10 Score=91.47 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=71.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-cccc---ccccceeEEEEEEcCeEEEEEEcCCCCCCh-------hh---HHhh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTT---IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PL---WRHY 80 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~ 80 (180)
-.++|+++|.+|+||||++|++++.. +... ..|...........+..+.++||||-.... .. ...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 35689999999999999999999876 2211 123333222333467899999999954321 11 2223
Q ss_pred cc--ccCEEEEEEECCChhhH-H--HHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 81 FQ--NTHGLIFVVDSNDRERI-G--EAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 81 ~~--~~~~~i~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+. ..|++++|..+.....- + ...+.+..++.... -.-.|||+|+.|..+
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 33 47999999876532211 1 23344444443321 124799999999765
No 315
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.26 E-value=4e-11 Score=87.43 Aligned_cols=136 Identities=20% Similarity=0.323 Sum_probs=83.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc-----------cccccceeEEEEEE----cCeEEEEEEcCCCCCC-----
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVEY----KNVSFTVWDVGGQDKI----- 73 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~----- 73 (180)
-..|+|+++|++|+|||||+|.|++..... ..+|+.+......+ ....+.++||||--.+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 568999999999999999999999764111 12344444444444 3467899999992111
Q ss_pred ---------hhhHHhhc--------------cccCEEEEEEECCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCC
Q 030289 74 ---------RPLWRHYF--------------QNTHGLIFVVDSNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 74 ---------~~~~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
......|+ .+.|+++|.+.++ ...+..++- .+..+ + ..+-+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt-gh~l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT-GHGLKPLDIEAMKRL-S----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC-CCCCCHHHHHHHHHH-h----cccCeeeeeecccc
Confidence 11112222 1468999999876 444555543 33333 3 23558999999999
Q ss_pred CCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289 130 PNAMSVSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
.+..++.++.+... +.....++++|.
T Consensus 175 lT~~El~~~K~~I~-~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIR-EDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHH-HHHHHhCCceeC
Confidence 88666555443322 222344555553
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.25 E-value=2.3e-10 Score=85.33 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=88.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC----Ccc-------------cc--c---cccceeE---EEEEE-----cCeEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG----EIV-------------TT--I---PTIGFNV---ETVEY-----KNVSFTV 64 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~----~~~-------------~~--~---~t~~~~~---~~~~~-----~~~~~~i 64 (180)
-.+.|+|+|+.++|||||+|+|.+. ... .. . .|+++.+ ..+.+ -..++++
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3678999999999999999999876 211 11 1 2455444 33333 2368999
Q ss_pred EEcCCCC--------CChh---------------------hHHhhcc-ccCEEEEEE-ECC----ChhhH-HHHHHHHHH
Q 030289 65 WDVGGQD--------KIRP---------------------LWRHYFQ-NTHGLIFVV-DSN----DRERI-GEAKDELHR 108 (180)
Q Consensus 65 ~D~~G~~--------~~~~---------------------~~~~~~~-~~~~~i~v~-d~~----~~~~~-~~~~~~~~~ 108 (180)
+||+|-. +... -++..+. .++..++|. |.+ .++.+ +.-..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999911 1111 0444555 789988888 653 12223 233345555
Q ss_pred HhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc--CCCChHHHHHHHHH
Q 030289 109 MLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT--SGQGLYEGLDWLSS 174 (180)
Q Consensus 109 ~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l~~ 174 (180)
+.. .++|+++++||+|-..+.. .++...+. .+++.+++.+|+. +..+|..+++.+..
T Consensus 176 Lk~----~~kPfiivlN~~dp~~~et-~~l~~~l~----eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 176 LKE----LNKPFIILLNSTHPYHPET-EALRQELE----EKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHh----cCCCEEEEEECcCCCCchh-HHHHHHHH----HHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 432 4899999999999443222 22222221 2234556666654 44566666666554
No 317
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.6e-10 Score=92.26 Aligned_cols=114 Identities=19% Similarity=0.144 Sum_probs=84.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--cccc-------------------ccccceeEEEEEEcC-eEEEEEEcCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVTT-------------------IPTIGFNVETVEYKN-VSFTVWDVGGQ 70 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~-------------------~~t~~~~~~~~~~~~-~~~~i~D~~G~ 70 (180)
.++.-||.|+|+..+|||||..+++... .... .-|+.....++...+ ..+.++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 5677899999999999999999997533 1110 113334445666674 99999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
-.|-....+.++-+|++++|+|+...-.. .....+.+... .++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~-QTEtv~rqa~~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEP-QTETVWRQADK----YGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeee-cHHHHHHHHhh----cCCCeEEEEECccccc
Confidence 99999999999999999999999754222 22333343332 4789999999999765
No 318
>PTZ00258 GTP-binding protein; Provisional
Probab=99.24 E-value=1.1e-10 Score=87.43 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=57.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccc--cccceeEEEEEEc-----------------CeEEEEEEcCCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTI--PTIGFNVETVEYK-----------------NVSFTVWDVGGQDKI 73 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~--~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~ 73 (180)
...++|+++|.||||||||+|+|.+.. ..... .|+......+... +.++.++|+||-..-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 567899999999999999999998766 22222 3556666666553 345999999994321
Q ss_pred ----hh---hHHhhccccCEEEEEEEC
Q 030289 74 ----RP---LWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 74 ----~~---~~~~~~~~~~~~i~v~d~ 93 (180)
.. .....++++|++++|+|.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 11 233455789999999997
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.24 E-value=3.9e-11 Score=86.22 Aligned_cols=57 Identities=28% Similarity=0.314 Sum_probs=40.7
Q ss_pred CCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 117 EAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 117 ~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
..+-++|+||+|+.+.. +++++...+... ....+++++|+++|+|++++.+||.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34569999999997632 344443333221 2346899999999999999999998753
No 320
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-10 Score=81.35 Aligned_cols=132 Identities=24% Similarity=0.418 Sum_probs=98.0
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhcccccC
Q 030289 47 TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDELR 116 (180)
Q Consensus 47 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 116 (180)
|.|+....+++++++|+.+|.+|+..-+.-|...+.+..++++|+..+. ...+.+....+..+-..++..
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 6778888899999999999999999888899999999999999998763 246666677777777777788
Q ss_pred CCeEEEEEecCCCCCCC------CHhH------------------------HHhH-------hCCCcc---CCcceEEEE
Q 030289 117 EAVLLVFANKQDLPNAM------SVSE------------------------VTDK-------LGLHSL---RQRRWYIQA 156 (180)
Q Consensus 117 ~~~iiiv~nK~D~~~~~------~~~~------------------------~~~~-------~~~~~~---~~~~~~~~~ 156 (180)
.+.+|+++||.|+..+. ..++ ..++ +....+ -.+.+..++
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 89999999999975420 0000 0110 111111 123456789
Q ss_pred eeccCCCChHHHHHHHHHHhhh
Q 030289 157 ACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
++|.+-++|..+|....+.+..
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 9999999999999988776654
No 321
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.6e-10 Score=84.80 Aligned_cols=120 Identities=18% Similarity=0.308 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcccc----------ccccceeEEEEEE----cCeEEEEEEcCCCCC-------C
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTT----------IPTIGFNVETVEY----KNVSFTVWDVGGQDK-------I 73 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~----------~~t~~~~~~~~~~----~~~~~~i~D~~G~~~-------~ 73 (180)
-.|+++++|++|.|||||||.|+....... ..|+.+....+.. -.+.+.++||||-.. +
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 359999999999999999999987642211 1244555555544 236789999999111 1
Q ss_pred -------hhhHHhhc-----------c--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289 74 -------RPLWRHYF-----------Q--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133 (180)
Q Consensus 74 -------~~~~~~~~-----------~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~ 133 (180)
......|+ . +.|+++|.+.++ ...+..++-..+.-+. ..+.+|-|+.|+|.....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~-ghgL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT-GHGLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC-CCCCcHhhHHHHHHHh----ccccccceeeccccCCHH
Confidence 11122222 2 579999999876 3334455433333222 356689999999998865
Q ss_pred CHhHHH
Q 030289 134 SVSEVT 139 (180)
Q Consensus 134 ~~~~~~ 139 (180)
.+..+.
T Consensus 175 El~~~K 180 (366)
T KOG2655|consen 175 ELNQFK 180 (366)
T ss_pred HHHHHH
Confidence 554433
No 322
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=1.5e-10 Score=85.93 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcC-----------------eEEEEEEcCCCCCC---
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKI--- 73 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~--- 73 (180)
++|+++|.|+||||||+|+|++.. .... ..|++.....+.+.+ .++.++|+||-..-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999877 2222 235566665555533 35999999994321
Q ss_pred -hh---hHHhhccccCEEEEEEECC
Q 030289 74 -RP---LWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 74 -~~---~~~~~~~~~~~~i~v~d~~ 94 (180)
.. .....++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12 2333457899999999973
No 323
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.17 E-value=1.2e-09 Score=77.11 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred eEEEEEEcCCCCC-------------ChhhHHhhccc-cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEe
Q 030289 60 VSFTVWDVGGQDK-------------IRPLWRHYFQN-THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFAN 125 (180)
Q Consensus 60 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~n 125 (180)
..+.++|+||-.. ...+...|+++ .+.+++|+|+...-.-+........+ . ....+.++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l-d---~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV-D---PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH-H---HcCCcEEEEEE
Confidence 5789999999542 12346667774 45889999875321111111222222 1 24678999999
Q ss_pred cCCCCCC
Q 030289 126 KQDLPNA 132 (180)
Q Consensus 126 K~D~~~~ 132 (180)
|+|..++
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998764
No 324
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.16 E-value=1.1e-10 Score=83.77 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=53.0
Q ss_pred EEEEcCCCCChHHHHHHhhcCCc-ccc--ccccceeEEEEEEcC-----------------eEEEEEEcCCCCCC----h
Q 030289 19 ILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKI----R 74 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~-~~~--~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~----~ 74 (180)
|+++|.|+||||||+|+|++... ... ..|++.....+.+.+ ..+.++|+||-..- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999998772 222 236666666665533 25999999994321 1
Q ss_pred hh---HHhhccccCEEEEEEEC
Q 030289 75 PL---WRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 75 ~~---~~~~~~~~~~~i~v~d~ 93 (180)
.+ ....++++|++++|+|+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 22 23345679999999986
No 325
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.13 E-value=1e-10 Score=80.47 Aligned_cols=134 Identities=22% Similarity=0.378 Sum_probs=97.0
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC----------CChhhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS----------NDRERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~ 114 (180)
.||+|+....++..++-+++.|.+|+..-+.-|.+++.+.-.+++++.. +++...++....+.-++..++
T Consensus 184 vPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPW 263 (359)
T KOG0085|consen 184 VPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 263 (359)
T ss_pred cCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccc
Confidence 4577777777777888999999999988888888888887777666644 345667778888888989999
Q ss_pred cCCCeEEEEEecCCCCCCCC------------------HhH----HHhHhCCCcc-CCcceEEEEeeccCCCChHHHHHH
Q 030289 115 LREAVLLVFANKQDLPNAMS------------------VSE----VTDKLGLHSL-RQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~~~~------------------~~~----~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
..+.++|+++||.|+.++.- ... +.+.+..... ...-+.-++++|.+-+||.-+|..
T Consensus 264 F~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaa 343 (359)
T KOG0085|consen 264 FQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAA 343 (359)
T ss_pred ccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHH
Confidence 99999999999999876321 111 1111111111 122234468888889999999999
Q ss_pred HHHHhhh
Q 030289 172 LSSNVSA 178 (180)
Q Consensus 172 l~~~~~~ 178 (180)
+-+.+.+
T Consensus 344 VkDtiLq 350 (359)
T KOG0085|consen 344 VKDTILQ 350 (359)
T ss_pred HHHHHHH
Confidence 8887765
No 326
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.09 E-value=2.8e-09 Score=78.42 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=99.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccc-----------------cccccceeEEEEEEc-----------------
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIPTIGFNVETVEYK----------------- 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------------~~~t~~~~~~~~~~~----------------- 58 (180)
+..++.+++.|+..+|||||+-.|..++... ..-+.++.+..+.++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4668999999999999999998886544111 011333333333331
Q ss_pred ------CeEEEEEEcCCCCCChhhHHhhc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 59 ------NVSFTVWDVGGQDKIRPLWRHYF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 59 ------~~~~~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
+.-++++||.|++.|...+..-+ ++.|..++++.+++.- ....+.+..+... ...|++++.||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~--~~~tkEHLgi~~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGV--TKMTKEHLGIALA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCc--chhhhHhhhhhhh---hcCCEEEEEEecccC
Confidence 13489999999999876644433 4689999999987543 3444444444332 478999999999998
Q ss_pred CCCCHhH----HHhHh---CC-----------------CccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 131 NAMSVSE----VTDKL---GL-----------------HSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 131 ~~~~~~~----~~~~~---~~-----------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
++..... +...+ +. ..+...-.|+|.+|+.+|+|++-+.+.+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 7533222 11111 10 01112246999999999999886655544
No 327
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=4.3e-10 Score=77.72 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=76.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCccc----------cccccceeEEEEEE--c--CeEEEEEEcCCCCC---Chhh--
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVT----------TIPTIGFNVETVEY--K--NVSFTVWDVGGQDK---IRPL-- 76 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~----------~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~---~~~~-- 76 (180)
.|||+++|.+|.|||||+|.|+...... ...|+.+...+..+ + ..++.++||||--. ...+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 7999999999999999999997543111 11144433333222 3 35788999999111 1111
Q ss_pred ---------HHhhcc--------------ccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 77 ---------WRHYFQ--------------NTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 77 ---------~~~~~~--------------~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
...|++ +.|+++|.+..+ ..++..++ .++..+.. -+.++-|+.|+|...-
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~-----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence 222222 468899988775 33333333 22232221 2347889999997764
Q ss_pred CCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 133 MSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
.+..++.+.... .+...++.+++--+.+
T Consensus 200 eEr~~FkqrI~~-el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 200 EERSAFKQRIRK-ELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHHHHHHHHHH-HHHhcCcccccccccc
Confidence 333333332221 1234455555554444
No 328
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.07 E-value=2.3e-10 Score=80.59 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=96.5
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccc-ccccee-EEEEEEcCeEEEEEEcCC----------CCCChh
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTI-PTIGFN-VETVEYKNVSFTVWDVGG----------QDKIRP 75 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~-~t~~~~-~~~~~~~~~~~~i~D~~G----------~~~~~~ 75 (180)
..+++.+..++++.|.+++|||+|+|-+..... .... ++.+.. ......-+..+.++|.|| ...+..
T Consensus 129 ~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 129 EDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred ccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhH
Confidence 345578889999999999999999999987662 2111 122211 111222455789999999 223455
Q ss_pred hHHhhccccC---EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC------HhHHHh-HhCC-
Q 030289 76 LWRHYFQNTH---GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS------VSEVTD-KLGL- 144 (180)
Q Consensus 76 ~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~------~~~~~~-~~~~- 144 (180)
....|+.+-+ .+.+.+|++- +++..+.-..+++.. .++|..+|+||||...... ...+.. ...+
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASV--PIQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccC--CCCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 6677776543 3455556542 223333333333332 5799999999999765321 011111 1011
Q ss_pred CccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
+.......|++.+|+.++.|++++...+.+.
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 1112234467889999999999988776654
No 329
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.07 E-value=4.8e-10 Score=73.30 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=37.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccc--cccceeEEEEEEcCeEEEEEEcCCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (180)
+++++|.+|+|||||+|++.+....... +..+.....+..++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 8999999999999999999987733222 22223333444443 6899999994
No 330
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.07 E-value=5.3e-10 Score=74.44 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=37.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE-cCeEEEEEEcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGG 69 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G 69 (180)
.+++|+++|.+|+|||||+|+|.+.......++.+.......+ .+..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 5788999999999999999999986633333322322211111 234588999999
No 331
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.04 E-value=3.4e-10 Score=86.30 Aligned_cols=156 Identities=17% Similarity=0.273 Sum_probs=112.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcccccccccee---EEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
..+|+.|+|..++|||+|+++++.+.+.....+.+-. ...+..+...+.+.|.+|.. ...|....|++|+||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf 103 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVF 103 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEE
Confidence 4689999999999999999999988855444433322 23344467788888988854 334556799999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC---CCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA---MSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
...+..+++.+......+........+|+++++++.-.... ...+.....+. .......+|++++..|.+++..
T Consensus 104 ~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~---~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 104 SVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS---AQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH---HhcCccceeecchhhhhhHHHH
Confidence 99999999999988888876666667888888887643221 11111111111 1223357999999999999999
Q ss_pred HHHHHHHhhh
Q 030289 169 LDWLSSNVSA 178 (180)
Q Consensus 169 ~~~l~~~~~~ 178 (180)
|..+...+..
T Consensus 181 f~~~~~k~i~ 190 (749)
T KOG0705|consen 181 FQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 332
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.2e-09 Score=81.07 Aligned_cols=152 Identities=15% Similarity=0.249 Sum_probs=89.5
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccceeE------------------------------
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNV------------------------------ 52 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~~------------------------------ 52 (180)
+..+...+.+.+.||+|.|...+||||++|+++..+ +....+|+.+..
T Consensus 98 l~~i~~~l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~ 177 (749)
T KOG0448|consen 98 LDAIDEVLARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLA 177 (749)
T ss_pred HHHHHHHHhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHH
Confidence 344577888999999999999999999999998654 111112111000
Q ss_pred --------------EEEEE-c------CeEEEEEEcCCCC---CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHH
Q 030289 53 --------------ETVEY-K------NVSFTVWDVGGQD---KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHR 108 (180)
Q Consensus 53 --------------~~~~~-~------~~~~~i~D~~G~~---~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 108 (180)
..+-. + ...+.++|.||-. ....-...+..++|++|+|.++.+.-+..+. +++..
T Consensus 178 haL~~~~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~ 256 (749)
T KOG0448|consen 178 HALKPDKDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHK 256 (749)
T ss_pred HhcCcccccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHH
Confidence 00000 1 1268899999944 3344566677789999999998755443222 33333
Q ss_pred HhcccccCCCeEEEEEecCCCCCCCC--HhHHHhH---hCCCccCCcceEEEEeeccC
Q 030289 109 MLSEDELREAVLLVFANKQDLPNAMS--VSEVTDK---LGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 109 ~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~Sa~~ 161 (180)
... .+.-+.|+-||.|...... .+.+... +.....+.-.-.+|++|+++
T Consensus 257 vs~----~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 257 VSE----EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred hhc----cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 322 2445777778889765321 2222222 22222223344689999553
No 333
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1e-09 Score=85.51 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=77.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCcccccc----------------ccceeE----EEEEE-----cCeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----------------TIGFNV----ETVEY-----KNVSFTVWDV 67 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----------------t~~~~~----~~~~~-----~~~~~~i~D~ 67 (180)
+....+++++|+-++|||+|+.-|..+.-+...+ ..++.+ .++-. +.+-+.+.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4668899999999999999998886544111100 111111 12111 4467899999
Q ss_pred CCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289 68 GGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 68 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
|||-.+..-....++.+|++++++|+...-.+..- ..+.+. -....|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikha----iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHA----IQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHH----HhccCcEEEEEehhHH
Confidence 99999998888999999999999999754433222 222222 2357899999999994
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=1e-09 Score=73.99 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=38.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGG 69 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G 69 (180)
...++++++|.+|+|||||+|+|.+.......+..+ .....+.. +..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 335899999999999999999999877333333222 22223333 34689999999
No 335
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=9e-10 Score=75.63 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=62.7
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHh---CCCccC
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKL---GLHSLR 148 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~---~~~~~~ 148 (180)
++..+..+++++|++++|+|+.++.. . |...+... ..+.|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--~---~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--S---LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--c---cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 46778889999999999999986531 1 11111111 24679999999999875332 22111111 000000
Q ss_pred CcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 149 QRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 149 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.....++++||+++.|++++++.+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 01125899999999999999999988653
No 336
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=5.5e-09 Score=76.56 Aligned_cols=116 Identities=21% Similarity=0.211 Sum_probs=80.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEE-------------c------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEY-------------K------------------ 58 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~-------------~------------------ 58 (180)
..+.=|+++|+-.+||||+|+.|+.++++. ..||++........ +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 345669999999999999999999877332 23444432222211 0
Q ss_pred ----------CeEEEEEEcCCCC-----------CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC
Q 030289 59 ----------NVSFTVWDVGGQD-----------KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE 117 (180)
Q Consensus 59 ----------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
-.+++++||||-- .|...+.=+..++|.++++||+...+.-.+....+..+..+ .
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----E 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----E 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----c
Confidence 0368999999922 13445677778999999999997666556777777777554 2
Q ss_pred CeEEEEEecCCCCCCC
Q 030289 118 AVLLVFANKQDLPNAM 133 (180)
Q Consensus 118 ~~iiiv~nK~D~~~~~ 133 (180)
-.+-+|+||.|..+.+
T Consensus 212 dkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQ 227 (532)
T ss_pred ceeEEEeccccccCHH
Confidence 3478999999987744
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.00 E-value=2.4e-09 Score=71.17 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=62.8
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW 152 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
++.+.+...+++|++++|+|++++..... ..+..... ..+.|+++|+||+|+.+......+. .. ....+.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~-~~----~~~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWK-SI----KESEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHH-HH----HHhCCC
Confidence 35667888889999999999976532111 11222221 2368999999999986432222211 11 111235
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhh
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+++++||+++.|++++++.+.+.+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 7899999999999999999987764
No 338
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.99 E-value=5.3e-08 Score=68.06 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=60.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--ccccc-cccceeEEEEEEcCeEEEEEEcCCCCCCh-------hhHHhhccc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTI-PTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWRHYFQN 83 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 83 (180)
.-.-+|+++|-|.+|||||+..+.... ...|. .|...-...+.+.+..+++.|.||--+-. .......+-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 445689999999999999999887654 22222 35556667778899999999999933221 112234466
Q ss_pred cCEEEEEEECCChh
Q 030289 84 THGLIFVVDSNDRE 97 (180)
Q Consensus 84 ~~~~i~v~d~~~~~ 97 (180)
+|.++.|.|++..+
T Consensus 140 aDlilMvLDatk~e 153 (364)
T KOG1486|consen 140 ADLILMVLDATKSE 153 (364)
T ss_pred ccEEEEEecCCcch
Confidence 89999999998654
No 339
>PRK12289 GTPase RsgA; Reviewed
Probab=98.97 E-value=3.2e-09 Score=79.07 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=64.8
Q ss_pred hhHHhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceE
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWY 153 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
.+.+..+.++|.+++|+|+.++. ....+..|+... . ..++|+++|+||+|+.++.....+...+ ...+..
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~ 151 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQ 151 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCe
Confidence 33445678999999999998765 334556666544 1 2578999999999997543333333222 233457
Q ss_pred EEEeeccCCCChHHHHHHHHHH
Q 030289 154 IQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 154 ~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
++++||.++.|++++++.+...
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhccc
Confidence 8999999999999999888643
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=5e-09 Score=69.63 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=40.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEE-EEEcCeEEEEEEcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNVSFTVWDVGG 69 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G 69 (180)
...+++++|.+|+|||||+|++.+.......++.+..... +...+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 5679999999999999999999976655555555543321 111334799999999
No 341
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.1e-08 Score=75.27 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=56.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEE------------------cCeEEEEEEcCCCC---
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEY------------------KNVSFTVWDVGGQD--- 71 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~------------------~~~~~~i~D~~G~~--- 71 (180)
.+++.|+|.|+||||||+|+++... .....| |++++...+.+ ....+.++|++|--
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 4789999999999999999999776 223333 66666555444 23578999998822
Q ss_pred ----CChhhHHhhccccCEEEEEEECC
Q 030289 72 ----KIRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 72 ----~~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
.+......-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22333445567899999999865
No 342
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.90 E-value=5e-09 Score=71.92 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc----------cccccccceeEEEEEEcCeEEEEEEcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI----------VTTIPTIGFNVETVEYKNVSFTVWDVGG 69 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~----------~~~~~t~~~~~~~~~~~~~~~~i~D~~G 69 (180)
+..+++++|.+|+|||||+|+|.+... ....|.+......+.... .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcC
Confidence 457899999999999999999997542 112222222222333332 689999999
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.89 E-value=6.1e-09 Score=70.29 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=38.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccc--cceeEEEEEEcCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT--IGFNVETVEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~ 70 (180)
...++++++|.+|+|||||+|++.+.......+. .......+..+ ..+.+|||||-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 4557999999999999999999998764332222 22222223333 56899999993
No 344
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.88 E-value=7.4e-09 Score=75.51 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=39.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~ 70 (180)
...++++++|.+|||||||+|+|.+.......+..+ .....+.. +..+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 456899999999999999999999876333333222 22223333 346899999994
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.87 E-value=6.9e-09 Score=75.27 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=38.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~ 70 (180)
.+.++++++|.+|+|||||+|+|.+.......+..+ .....+... ..+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 356899999999999999999999766322222222 222233332 36899999995
No 346
>PRK12288 GTPase RsgA; Reviewed
Probab=98.87 E-value=1.5e-08 Score=75.49 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=64.3
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
..++|.+++|++.....++..+..|+.... ..++|.++|+||+|+.++........... .....+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~--~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLD--IYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 356899999999988888888888876442 25688999999999976432211111111 112345689999999
Q ss_pred CCCChHHHHHHHHHH
Q 030289 161 SGQGLYEGLDWLSSN 175 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~ 175 (180)
++.|++++++.+...
T Consensus 192 tg~GideL~~~L~~k 206 (347)
T PRK12288 192 TGEGLEELEAALTGR 206 (347)
T ss_pred CCcCHHHHHHHHhhC
Confidence 999999999988754
No 347
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.84 E-value=1.8e-08 Score=73.51 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=63.9
Q ss_pred HhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289 78 RHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.++......... ....+.++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~-----~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVE-----ALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHH-----HHhCCCeEEE
Confidence 34578899999999999887 77777887765532 46889999999999764211111111 1123568999
Q ss_pred eeccCCCChHHHHHHHHH
Q 030289 157 ACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~ 174 (180)
+|++++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887754
No 348
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=2e-08 Score=72.87 Aligned_cols=80 Identities=26% Similarity=0.375 Sum_probs=58.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEE-----------------cCeEEEEEEcCCCCC-
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEY-----------------KNVSFTVWDVGGQDK- 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~-----------------~~~~~~i~D~~G~~~- 72 (180)
.++.++.|+|.|++|||||+|.|.... .....| |++++...+.+ .+..++++|++|-.+
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 357899999999999999999999777 333344 78877766655 235799999998332
Q ss_pred ------ChhhHHhhccccCEEEEEEEC
Q 030289 73 ------IRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 73 ------~~~~~~~~~~~~~~~i~v~d~ 93 (180)
.......-++.+|+++-|+++
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEe
Confidence 222344455678998888865
No 349
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=3.1e-08 Score=76.52 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=85.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
..|-++++||||+||||||..|...........+.=.+..+..+...+.+.++|.+ .. ......+-+|.+++++|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LH-QMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HH-HHHhHHHhhheeEEEeccc
Confidence 46788899999999999998887543211111111123345557789999999942 22 2334556789999999987
Q ss_pred ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCC--cceEEEEeeccC
Q 030289 95 DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQ--RRWYIQAACATS 161 (180)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~ 161 (180)
-.-..+.+ .+ ..++.++.. ..++-|+|+.|+.... .+....+.+.-.+|.. .++.+|..|...
T Consensus 145 fGfEMETm-EF-Lnil~~HGm--PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 145 FGFEMETM-EF-LNILISHGM--PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cCceehHH-HH-HHHHhhcCC--CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 33222222 22 223223222 3378889999997643 4555555555555533 467888888654
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.81 E-value=2.2e-08 Score=66.46 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=37.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGG 69 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G 69 (180)
....+++++|.+|+|||||+|.+.+... ....+ |..... +.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence 4678899999999999999999998662 22222 333333 222 24699999999
No 351
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.6e-09 Score=76.13 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=89.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc---C----Ccccc----------c--cccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL---G----EIVTT----------I--PTIGFNVETVEYKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~---~----~~~~~----------~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (180)
+..++||.-||+...|||||..++.. . ++..| . .|+......+...+..+.=.|+||+..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 36789999999999999999877752 0 01111 1 1343444444556778889999999988
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHH-----hHhCCCccC
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVT-----DKLGLHSLR 148 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~-----~~~~~~~~~ 148 (180)
-+....-..+.|++|+|+.++|..- ...++.+. +.+.. .-..+++++||.|+.++.+.-++. +.+..-.+.
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~M-PQTrEHlL-LArQV--GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~ 206 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPM-PQTREHLL-LARQV--GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD 206 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCC-cchHHHHH-HHHHc--CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 8777777778899999999987432 11222111 11111 123488899999998654432222 222222333
Q ss_pred CcceEEEEeecc
Q 030289 149 QRRWYIQAACAT 160 (180)
Q Consensus 149 ~~~~~~~~~Sa~ 160 (180)
.-..|++.=||.
T Consensus 207 Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 207 GDNTPVIRGSAL 218 (449)
T ss_pred CCCCCeeecchh
Confidence 445677766643
No 352
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=73.11 Aligned_cols=149 Identities=19% Similarity=0.163 Sum_probs=92.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-cc--ccccccceeEEEEEE-cCeEEEEEEcCCCCC---------ChhhHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IV--TTIPTIGFNVETVEY-KNVSFTVWDVGGQDK---------IRPLWRHY 80 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~--~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~ 80 (180)
....-|.++|=.++|||||+++|..-. .. ...+|.++....... .+..+-+-||-|--. |+. +..-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~A-TLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQA-TLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence 344568899999999999999998544 11 224566655554444 456778889988221 111 2223
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe----EEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV----LLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
...+|.++-|.|+++|+.-+.-...+..+ +.-.-++.| ++=|=||.|..+....++ .. .-+.
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----~n---------~~v~ 320 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----KN---------LDVG 320 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCccc----cC---------Cccc
Confidence 34689999999999986533333333333 222222222 355667887665322111 00 1478
Q ss_pred eeccCCCChHHHHHHHHHHhh
Q 030289 157 ACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+|+.+|+|++++...+-.++.
T Consensus 321 isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred cccccCccHHHHHHHHHHHhh
Confidence 899999999999998876653
No 353
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.79 E-value=8.6e-09 Score=68.12 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=28.5
Q ss_pred hHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 4 VISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 4 ~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
-++.++..++. -.++++|++|||||||+|+|....
T Consensus 25 g~~~l~~~l~~--k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG--KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT--SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45666666654 678999999999999999999864
No 354
>PRK00098 GTPase RsgA; Reviewed
Probab=98.78 E-value=2e-08 Score=73.55 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=59.4
Q ss_pred hccccCEEEEEEECCChhhHHH-HHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEe
Q 030289 80 YFQNTHGLIFVVDSNDRERIGE-AKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
...++|.+++|+|+.++..... +..|+.... ..++|+++|+||+|+.+... ..++... ....+.+++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~~~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLEEARELLAL-----YRAIGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHHHHHHHHHH-----HHHCCCeEEEE
Confidence 3588999999999987765444 355655442 24789999999999963221 1112111 12234689999
Q ss_pred eccCCCChHHHHHHHHH
Q 030289 158 CATSGQGLYEGLDWLSS 174 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~ 174 (180)
||+++.|++++++.+..
T Consensus 148 SA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 148 SAKEGEGLDELKPLLAG 164 (298)
T ss_pred eCCCCccHHHHHhhccC
Confidence 99999999999988753
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.78 E-value=6.2e-09 Score=78.15 Aligned_cols=98 Identities=20% Similarity=0.220 Sum_probs=63.3
Q ss_pred CCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccC
Q 030289 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLR 148 (180)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~ 148 (180)
++.|......+.+.++++++|+|+.+... .|...+... ..+.|+++|+||+|+.+.. ..+.+.+... ..++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 45677788888899999999999975431 122222211 1257899999999986532 2222221110 1111
Q ss_pred Ccce---EEEEeeccCCCChHHHHHHHHHH
Q 030289 149 QRRW---YIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 149 ~~~~---~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
..++ .++.+||+++.|++++++.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2222 48999999999999999998754
No 356
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.76 E-value=7.9e-08 Score=71.64 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc-c--cc-ccccceeEEEEEEcC-----------------eEEEEEEcCCCCC---
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI-V--TT-IPTIGFNVETVEYKN-----------------VSFTVWDVGGQDK--- 72 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~-~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~--- 72 (180)
++++++|.|++|||||+|.|++... . .+ ..|+.+....+.+.+ ..+.+.|+||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999987763 2 22 235666666665522 4689999999433
Q ss_pred ----ChhhHHhhccccCEEEEEEECC
Q 030289 73 ----IRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 73 ----~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
........++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445678899999999873
No 357
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.2e-08 Score=75.45 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=99.9
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcC----------------------------------CccccccccceeEEEEE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLG----------------------------------EIVTTIPTIGFNVETVE 56 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~----------------------------------~~~~~~~t~~~~~~~~~ 56 (180)
..+..+.|++|+|+..+||||+-..+... +......|++....-+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34688999999999999999997666421 01111235556666677
Q ss_pred EcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh---hhHHHH--HHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 57 YKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR---ERIGEA--KDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 57 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~--~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.....+.+.|.||+..|-.....-..++|..++|+.+... ..|+.- ......+..- ..-.-+|+++||+|.+.
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt--~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 231 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh--hccceEEEEEEeccCCc
Confidence 7888999999999999877777777889999999987421 122111 1111222111 23345899999999876
Q ss_pred CC----CHhHHHh----HhCCCcc-CCcceEEEEeeccCCCChHHHH
Q 030289 132 AM----SVSEVTD----KLGLHSL-RQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 132 ~~----~~~~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
.. ..++... .+..... ......|+++|..+|.++++..
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 32 1222221 1111111 1234579999999999988754
No 358
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=74.00 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=39.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccccccccee--EEEEEEcCeEEEEEEcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNVSFTVWDVGG 69 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G 69 (180)
....+++|+|-|+||||||||+|.+.......+.-|.. ...+..+ ..+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-DGIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-CCeEEecCCC
Confidence 44688999999999999999999988843333322333 3333332 3489999999
No 359
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.75 E-value=6.5e-08 Score=71.34 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=92.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-----------------ccc--cccceeEEEEEE-------------------
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-----------------TTI--PTIGFNVETVEY------------------- 57 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-----------------~~~--~t~~~~~~~~~~------------------- 57 (180)
..+|+++|...+|||||+--|.+++.. +.. +.++.++.-|+.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 578999999999999998666543211 111 122222222221
Q ss_pred ---c-CeEEEEEEcCCCCCChhhHHhhccc--cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 58 ---K-NVSFTVWDVGGQDKIRPLWRHYFQN--THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 58 ---~-~~~~~i~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+ ---+.++|.+|+++|.+.+-.-..+ .|..++++-++- .+-...+.+..+. ..-.+|+.+|.+|+|.++
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa--GIiGmTKEHLgLA---LaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA--GIIGMTKEHLGLA---LALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc--cceeccHHhhhhh---hhhcCcEEEEEEeeccCc
Confidence 0 1247899999999998775544443 577777776541 2222222222221 124689999999999988
Q ss_pred CCCHhHHHh----HhCC---------------------CccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 132 AMSVSEVTD----KLGL---------------------HSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 132 ~~~~~~~~~----~~~~---------------------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
..-+++-.+ .+.. .+..++-+|+|.+|-.+|+|++.+...+.
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 654443222 1111 12234567999999999999987765543
No 360
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=8.7e-08 Score=63.75 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=58.9
Q ss_pred hhccccCEEEEEEECCChhh--HHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289 79 HYFQNTHGLIFVVDSNDRER--IGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
..+.++|++++|+|+.++.. ...+...+.. . ..+.|+++|+||+|+.++....++...+... ....++.
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~----~~~~~~~ 74 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----E-KPHKHLIFVLNKCDLVPTWVTARWVKILSKE----YPTIAFH 74 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHh----c-cCCCCEEEEEEchhcCCHHHHHHHHHHHhcC----CcEEEEE
Confidence 35678999999999987532 2222333322 1 2358999999999997543333334343321 1233688
Q ss_pred eeccCCCChHHHHHHHHHHh
Q 030289 157 ACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~ 176 (180)
+||+++.|++++.+.+.+.+
T Consensus 75 iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 75 ASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eeccccccHHHHHHHHHHHH
Confidence 99999999999999987654
No 361
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5.5e-08 Score=71.60 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=93.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc-----------------ccc-------ccceeE--EEEEE----------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------------TIP-------TIGFNV--ETVEY---------- 57 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------------~~~-------t~~~~~--~~~~~---------- 57 (180)
-...+++++|...+|||||+--|..++... ... +.+++. ..+++
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 446899999999999999986665322110 011 122211 11111
Q ss_pred --cCeEEEEEEcCCCCCChhhHHhhccc--cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289 58 --KNVSFTVWDVGGQDKIRPLWRHYFQN--THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133 (180)
Q Consensus 58 --~~~~~~i~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~ 133 (180)
..--+.++|.+|+.+|...+...+.+ .|.+++++++...- .+....+..++.. -++|+.++.+|+|+....
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi--~~tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGI--TWTTREHLGLIAA---LNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCC--ccccHHHHHHHHH---hCCCeEEEEEeeccccch
Confidence 11247899999999998887766664 58899999886432 2222222223222 478999999999998764
Q ss_pred CHhHH----HhHhCCC---------------------ccCCcceEEEEeeccCCCChHHHHHH
Q 030289 134 SVSEV----TDKLGLH---------------------SLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 134 ~~~~~----~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
.++.. ...+... .....-.|+|.+|+.+|++++-+...
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 43322 2211111 11123359999999999998765443
No 362
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.70 E-value=7.5e-07 Score=62.72 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=52.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC--Cccc----cccccceeEEEEEE---cCeEEEEEEcCCCCCC------hhhHHh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG--EIVT----TIPTIGFNVETVEY---KNVSFTVWDVGGQDKI------RPLWRH 79 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~--~~~~----~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~------~~~~~~ 79 (180)
+-.-|.|+|++++|||+|+|+|.+. .+.. ...|.|+-...... .+..+.++||+|-... ......
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3445779999999999999999988 4221 12355544443333 3578999999995432 111222
Q ss_pred hccc--cCEEEEEEECCC
Q 030289 80 YFQN--THGLIFVVDSND 95 (180)
Q Consensus 80 ~~~~--~~~~i~v~d~~~ 95 (180)
.+.- ++++++..+...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 3333 788888777653
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.69 E-value=8e-08 Score=63.79 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=54.1
Q ss_pred CEEEEEEECCChhhHHHHHHHHH-HHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELH-RMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
|++++|+|+.++.+.. ..++. .... ..++|+++|+||+|+.++....++...+.. .....++.+||.++.
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~----~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRH----SYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHh----hCCceEEEEeccCCc
Confidence 6899999998764332 22332 2222 246899999999999654322232222211 113468999999999
Q ss_pred ChHHHHHHHHHHh
Q 030289 164 GLYEGLDWLSSNV 176 (180)
Q Consensus 164 ~i~~~~~~l~~~~ 176 (180)
|++++.+.+.+..
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999887653
No 364
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=4.6e-09 Score=78.19 Aligned_cols=128 Identities=20% Similarity=0.133 Sum_probs=91.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC--cc-----c--------------cccccceeEEEEEEcCeEEEEEEcCCC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV-----T--------------TIPTIGFNVETVEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~-----~--------------~~~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (180)
...+--+|.++.+-.+||||...|++... .. . ...|+--.-.+++.++.++.++||||+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpgh 112 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGH 112 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCc
Confidence 34566789999999999999999997522 10 0 111222334566679999999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC---CCHhHHHhHhCC
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA---MSVSEVTDKLGL 144 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~---~~~~~~~~~~~~ 144 (180)
-.|+-..+++++--|+++.|||.+-.-.-+.+.-|-.. ...++|-+.++||+|.... ..++.+.++++.
T Consensus 113 vdf~leverclrvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 113 VDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred ceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence 99998889999999999999999754333444444322 2357899999999998653 335556655553
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=98.64 E-value=9.3e-08 Score=71.35 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+..+...+..+ .++|+|++|||||||+|+|.+..
T Consensus 163 I~eL~~~L~~k--i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 163 LEALLEQLRNK--ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred HHHHhhhhccc--eEEEEeCCCCCHHHHHHHHcCcc
Confidence 34444444332 38999999999999999999765
No 366
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=6.5e-08 Score=76.64 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=76.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC------------cc---ccccccceeEE--EEEE--cCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE------------IV---TTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~------------~~---~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~ 73 (180)
.++.-+++++-+...|||||+..|.... +. +...|.++... .+.. +++.+.++|+|||-.|
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence 4567789999999999999998886432 11 11123343322 2323 7899999999999999
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 128 (180)
.+......+-+|++++++|+... .......+++..+..+...++|+||+|
T Consensus 86 ~sevssas~l~d~alvlvdvveg-----v~~qt~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 86 SSEVSSASRLSDGALVLVDVVEG-----VCSQTYAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhhcCCcEEEEeeccc-----cchhHHHHHHHHHHccCceEEEEehhh
Confidence 99999999999999999998632 111111112212223555799999999
No 367
>PRK12288 GTPase RsgA; Reviewed
Probab=98.61 E-value=1.3e-07 Score=70.46 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=25.7
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+..+...+..+ -++|+|.+|||||||+|+|.+..
T Consensus 196 ideL~~~L~~k--i~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 196 LEELEAALTGR--ISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred HHHHHHHHhhC--CEEEECCCCCCHHHHHHHhcccc
Confidence 34454444432 37899999999999999999765
No 368
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.8e-07 Score=72.69 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=78.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccc-------ccc-------------ccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVT-------TIP-------------TIGFNVETVEYKNVSFTVWDVGGQDK 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~-------~~~-------------t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (180)
.+.-+|.++-+-.+||||+.++.+.+. ... ... |+--....+..++..+.++|||||-.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456678899999999999999998643 111 011 11111223344688999999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
|-.-.++.++-.|+++++++....-. ......+.+..++ ++|-+.+.||.|...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry----~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY----NVPRICFINKMDRMG 170 (721)
T ss_pred EEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc----CCCeEEEEehhhhcC
Confidence 87778888899999999998764321 2333444454433 788999999999543
No 369
>PRK14974 cell division protein FtsY; Provisional
Probab=98.59 E-value=7.4e-07 Score=66.10 Aligned_cols=94 Identities=16% Similarity=0.129 Sum_probs=52.8
Q ss_pred CeEEEEEEcCCCCCChhh----HHhhc--cccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPL----WRHYF--QNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+.++||+|....... ..... .+.|.+++|+|+.... .++.. ..+.... .+--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a-~~f~~~~-------~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA-REFNEAV-------GIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH-HHHHhcC-------CCCEEEEeeecCCC
Confidence 467999999997653221 11221 2578899999986533 22222 2222111 12478899999865
Q ss_pred CCCH-hHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 132 AMSV-SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 132 ~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
.-.. -.+... .+.|+.+++ +|++++++..
T Consensus 294 ~~G~~ls~~~~--------~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 KGGAALSIAYV--------IGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CccHHHHHHHH--------HCcCEEEEe--CCCChhhccc
Confidence 3221 112222 234677776 7888877653
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.57 E-value=2.4e-06 Score=63.12 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=74.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC------C--ccc---cc-----------cccceeEEEE-----------------
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG------E--IVT---TI-----------PTIGFNVETV----------------- 55 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~------~--~~~---~~-----------~t~~~~~~~~----------------- 55 (180)
...-++++|++|+||||++..|... + ... +. .-.++.+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999888531 1 000 00 0111111111
Q ss_pred EEcCeEEEEEEcCCCCCChhh----HHhh--------ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEE
Q 030289 56 EYKNVSFTVWDVGGQDKIRPL----WRHY--------FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVF 123 (180)
Q Consensus 56 ~~~~~~~~i~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv 123 (180)
...++.+.++||||....... ...+ -...+..++|+|++... +.+.+ ....... -.+--+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEE
Confidence 014568999999996543221 1111 12467889999997432 22222 2222111 1234788
Q ss_pred EecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 124 ANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 124 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
+||.|....-. .-.+... .+.|+..++ +|++++++-
T Consensus 266 lTKlD~t~~~G~~l~~~~~--------~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 266 LTKLDGTAKGGVVFAIADE--------LGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EECCCCCCCccHHHHHHHH--------HCCCEEEEe--CCCChhhCc
Confidence 99999654221 1122222 245677777 778776653
No 371
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.5e-08 Score=71.52 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=93.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccc------ccccceeEE-------------------EEEE-----------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT------IPTIGFNVE-------------------TVEY----------- 57 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~------~~t~~~~~~-------------------~~~~----------- 57 (180)
+-.+||.-+|+.-.||||++.++++-..... -.|+...|. .+..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 4578999999999999999988876321110 001111110 0000
Q ss_pred -------cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 58 -------KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 58 -------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
--..++++|+||++-.-.....-..-.|++++++..+.........+.+..+ ... .-..++++-||.|+.
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-eiM--~LkhiiilQNKiDli 192 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLI 192 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-HHh--hhceEEEEechhhhh
Confidence 0135889999998744333222222348888888876543322222222111 111 113388999999997
Q ss_pred CCCC-Hh---HHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 131 NAMS-VS---EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 131 ~~~~-~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.+.. .+ ++.... ......+.|++++||.-+.||+-+.++++..+.
T Consensus 193 ~e~~A~eq~e~I~kFi--~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 193 KESQALEQHEQIQKFI--QGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hHHHHHHHHHHHHHHH--hccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 7533 22 222221 112234679999999999999999999998764
No 372
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.55 E-value=1.7e-07 Score=66.88 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCcccc-----------ccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-----------IPTIGFNVETVEYKNVSFTVWDVGGQDK 72 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (180)
-.++++|++|||||||+|+|.+...... +.|.......+ . ...++||||-..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C--CcEEEeCCCccc
Confidence 4789999999999999999997541111 11233333222 2 237999999543
No 373
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.55 E-value=4.9e-07 Score=60.20 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=37.4
Q ss_pred CeEEEEEEcCCCCCChhhHHhh--------ccccCEEEEEEECCChhh-HHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHY--------FQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
+.++.++|+||-.+-....... .-..+.++.++|+.+... +.....+..++.. . =++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C---CEEEEecccC
Confidence 3567899999976544333322 224788999999864322 1122223333322 1 2779999996
No 374
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=1.3e-07 Score=67.04 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=76.6
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcccc-----ccccceeEEEEEE----cCeEEEEEEcCC-------CCC
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY----KNVSFTVWDVGG-------QDK 72 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~-----~~t~~~~~~~~~~----~~~~~~i~D~~G-------~~~ 72 (180)
++...-=.|||+-+|..|.|||||+..|++..+... .|++.....++.. -..+++++||.| .+.
T Consensus 35 ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S 114 (406)
T KOG3859|consen 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS 114 (406)
T ss_pred HHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc
Confidence 334444579999999999999999999998763322 3455555544444 235789999999 111
Q ss_pred C-------hhhHHhhcc---------------ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 73 I-------RPLWRHYFQ---------------NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 73 ~-------~~~~~~~~~---------------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
| .+..+.|++ +.|+++|.+.++ ..++..++.....-+. .++.||-++.|.|..
T Consensus 115 yk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PT-GH~LKslDLvtmk~Ld----skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 115 YKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPT-GHSLKSLDLVTMKKLD----SKVNIIPVIAKADTI 189 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCC-CcchhHHHHHHHHHHh----hhhhhHHHHHHhhhh
Confidence 1 111222221 457888888776 4556666654443333 345678888899976
Q ss_pred CCCCH
Q 030289 131 NAMSV 135 (180)
Q Consensus 131 ~~~~~ 135 (180)
....+
T Consensus 190 sK~eL 194 (406)
T KOG3859|consen 190 SKEEL 194 (406)
T ss_pred hHHHH
Confidence 64433
No 375
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=3.1e-06 Score=55.44 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=73.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE--cCeEEEEEEcC-C-----------CC---CC----
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY--KNVSFTVWDVG-G-----------QD---KI---- 73 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~D~~-G-----------~~---~~---- 73 (180)
..+||.+.|+||+||||++.++...-......--|+....++- .-.-|.+.|+. | .. +|
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 4689999999999999999887632111111111222222222 12334555544 2 00 11
Q ss_pred ---h----hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc
Q 030289 74 ---R----PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS 146 (180)
Q Consensus 74 ---~----~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~ 146 (180)
. ...+.+++.+|++ ++|=.-+ .+.....+...+......+.|++.++++.+-.+ -++++... +
T Consensus 84 ~~le~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~~-~--- 153 (179)
T COG1618 84 EGLEEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKKL-G--- 153 (179)
T ss_pred HHHHHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhhc-C---
Confidence 1 1233444455644 4554322 222222222222322335788899888775422 22222221 1
Q ss_pred cCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
.+.+| .+.+|=+.++..+.+.|...
T Consensus 154 ----~v~v~----lt~~NR~~i~~~Il~~L~~~ 178 (179)
T COG1618 154 ----GVYVF----LTPENRNRILNEILSVLKGE 178 (179)
T ss_pred ----CEEEE----EccchhhHHHHHHHHHhccC
Confidence 12233 46666678888888877643
No 376
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.54 E-value=3.5e-07 Score=59.75 Aligned_cols=78 Identities=9% Similarity=0.062 Sum_probs=50.0
Q ss_pred HHhhccccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEE
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYI 154 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
....+.++|++++|+|+.++.+.. .+..++... ..+.|+++|+||+|+.++....++.+.+. ..+..+
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~~~~~~~~~~-----~~~~~i 74 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQRKAWAEYFK-----KEGIVV 74 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHHHHHHHHHHH-----hcCCeE
Confidence 345678899999999998764322 333433322 14689999999999965433333333222 223578
Q ss_pred EEeeccCCCC
Q 030289 155 QAACATSGQG 164 (180)
Q Consensus 155 ~~~Sa~~~~~ 164 (180)
+++||.++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998764
No 377
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.54 E-value=1.9e-07 Score=63.06 Aligned_cols=89 Identities=16% Similarity=0.091 Sum_probs=57.9
Q ss_pred hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
.....+.++|.+++|+|+.++..-.. ..+.... .+.|.++|+||+|+.++....++.+.+.. ....++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~-----~~~~vi 79 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES-----KGEKVL 79 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-----cCCeEE
Confidence 35667788999999999976532111 1111111 34689999999999653222222222111 123689
Q ss_pred EeeccCCCChHHHHHHHHHHh
Q 030289 156 AACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
.+|++++.|++++.+.+...+
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred EEECCCcccHHHHHHHHHHHH
Confidence 999999999999999988764
No 378
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=1.4e-06 Score=74.61 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred EEEEcCCCCChHHHHHHhhcCCccc----cccccc---eeEEEEEEcCeEEEEEEcCCCC--------CChhhHHhhcc-
Q 030289 19 ILMVGLDAAGKTTILYKLKLGEIVT----TIPTIG---FNVETVEYKNVSFTVWDVGGQD--------KIRPLWRHYFQ- 82 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~---~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~- 82 (180)
-+|+|++|+||||++++--...+.. ...+.+ .......+ ..+-.++||+|.- .....|..++.
T Consensus 114 YlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf-~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWF-TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred EEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEe-cCCEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 5899999999999998762222111 011111 11111111 2345699999921 22334555553
Q ss_pred --------ccCEEEEEEECCC-----hhhH----HHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 83 --------NTHGLIFVVDSND-----RERI----GEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 83 --------~~~~~i~v~d~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
..+++|+++|+.+ ++.. ..+...+.++... .....|+.+++||||+..
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3699999999753 2222 2333344444332 345799999999999875
No 379
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.52 E-value=8.9e-07 Score=62.32 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--cccccc-ccceeEEEEEEcCeEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP-TIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWRHYFQNTHG 86 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~~-t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ 86 (180)
-+|.++|-|.+||||++..+.+.. ...+.- |.-.-...+++++.++++-|.||--+- ........+-|+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 389999999999999999998766 223322 333334455678889999999993321 1123334466899
Q ss_pred EEEEEECCChh
Q 030289 87 LIFVVDSNDRE 97 (180)
Q Consensus 87 ~i~v~d~~~~~ 97 (180)
+++|.|+..+-
T Consensus 140 i~~vld~~kp~ 150 (358)
T KOG1487|consen 140 IFIVLDVLKPL 150 (358)
T ss_pred EEEEeeccCcc
Confidence 99999986553
No 380
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.49 E-value=7.7e-07 Score=64.67 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=60.5
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEE
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYI 154 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
......+.++|++++|+|+..+.+-. ...+...+ .+.|+++|+||+|+.+......+.+.+.. .+.++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~--~~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-----~~~~v 80 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSR--NPMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-----KGIKA 80 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCC--ChhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-----cCCeE
Confidence 34566778899999999997653211 12222222 25789999999999653222333222211 23468
Q ss_pred EEeeccCCCChHHHHHHHHHHhh
Q 030289 155 QAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+.+|++++.|++++.+.+.+.+.
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.49 E-value=2.6e-06 Score=61.69 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=53.4
Q ss_pred cCeEEEEEEcCCCCCChhhHH-------hhc-----cccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289 58 KNVSFTVWDVGGQDKIRPLWR-------HYF-----QNTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFA 124 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~ 124 (180)
.++.+.++||||......... ... ..+|.+++|+|++.. +.+... ..+.... -+.-+|+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g~Il 224 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTGIIL 224 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCEEEE
Confidence 457899999999765433211 111 137899999999743 222222 2222111 1357889
Q ss_pred ecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 125 NKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 125 nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
||.|...... .-.+.... +.|+.+++ +|++++++-
T Consensus 225 TKlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred EccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence 9999865332 11222222 34677776 777776654
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.45 E-value=3.8e-06 Score=64.13 Aligned_cols=109 Identities=21% Similarity=0.185 Sum_probs=61.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc------CC--ccc---ccc-----------ccceeEEEEEE----------------
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL------GE--IVT---TIP-----------TIGFNVETVEY---------------- 57 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~------~~--~~~---~~~-----------t~~~~~~~~~~---------------- 57 (180)
..-|+++|++||||||++.+|.. .+ ... +.+ -.++.+.....
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999988852 12 111 100 11111111110
Q ss_pred -cCeEEEEEEcCCCCCChhhH----Hhh--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 58 -KNVSFTVWDVGGQDKIRPLW----RHY--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 58 -~~~~~~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
.++.+.++||||........ ..+ ..+.+.+++|+|+.....-......+... -.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 25789999999966543221 111 12467899999986432222222222211 12457889999975
Q ss_pred C
Q 030289 131 N 131 (180)
Q Consensus 131 ~ 131 (180)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 4
No 383
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.44 E-value=4.2e-07 Score=68.40 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=35.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-------cccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
..++.++|.+|||||||+|+|+.... ....|.+......+.. +..+.++||||-.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~-~~~~~l~DtPG~~ 215 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL-DDGHSLYDTPGII 215 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe-CCCCEEEECCCCC
Confidence 46999999999999999999987431 1112211122222332 2346799999954
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.43 E-value=7.5e-07 Score=67.14 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=35.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-------ccccccccceeEEEEEEcCeEEEEEEcCCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-------IVTTIPTIGFNVETVEYKNVSFTVWDVGGQ 70 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 70 (180)
...++.++|.+|||||||+|+|.... .....|.+......+...+ ...++||||-
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi 220 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGI 220 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCc
Confidence 35689999999999999999998542 1122232222223333322 2479999995
No 385
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.38 E-value=1.4e-06 Score=63.69 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.6
Q ss_pred HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..+...+. .-.++++|++|+|||||+|.|.+..
T Consensus 153 ~~L~~~L~--~k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 153 DELREYLK--GKTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred HHHHhhhc--cceEEEECCCCCCHHHHHHHHhchh
Confidence 34444443 2579999999999999999998765
No 386
>PRK00098 GTPase RsgA; Reviewed
Probab=98.37 E-value=1.4e-06 Score=63.98 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=25.9
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+..+...++ ...++++|++|||||||+|.|.+..
T Consensus 155 i~~L~~~l~--gk~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 155 LDELKPLLA--GKVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred HHHHHhhcc--CceEEEECCCCCCHHHHHHHHhCCc
Confidence 344444443 4578999999999999999998755
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=63.20 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=26.9
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+..+...++.+ -.+++|++|||||||+|+|....
T Consensus 155 ~~~l~~~l~~~--~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 155 LEELAELLAGK--ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred HHHHHHHhcCC--eEEEECCCCCcHHHHHHhhCchh
Confidence 45566666554 78899999999999999998643
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.34 E-value=2.4e-06 Score=62.45 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=59.9
Q ss_pred hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEE
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
.....+..+|++++|+|+.++.+.. ..++.... .+.|.++|+||+|+.+......+...+. ..+.+++
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~--~~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~-----~~~~~vi 84 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSE--NPMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFE-----EQGIKAL 84 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCC--ChhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHH-----HcCCeEE
Confidence 3566778899999999997653311 12233332 2578999999999965322223322221 1134689
Q ss_pred EeeccCCCChHHHHHHHHHHhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.+|++++.|++++.+.+.+.+.
T Consensus 85 ~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 85 AINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.31 E-value=1.9e-06 Score=59.33 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--------cc---cc-----------ccccceeEEEEE-----------------E
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--------IV---TT-----------IPTIGFNVETVE-----------------Y 57 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--------~~---~~-----------~~t~~~~~~~~~-----------------~ 57 (180)
.-|+++|++||||||.+-+|...- .. .+ ....++...... .
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 357899999999999997775321 00 00 001222221111 1
Q ss_pred cCeEEEEEEcCCCCCChhh----HHhhcc--ccCEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPL----WRHYFQ--NTHGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
++.++.++||+|....... ...++. ..+-+++|.+++.. +.+.........+ + +--+++||.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~-~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------G-IDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------S-TCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------c-CceEEEEeecCC
Confidence 3467999999997765432 222222 46789999998743 3333222322221 1 125669999976
Q ss_pred CC
Q 030289 131 NA 132 (180)
Q Consensus 131 ~~ 132 (180)
..
T Consensus 154 ~~ 155 (196)
T PF00448_consen 154 AR 155 (196)
T ss_dssp ST
T ss_pred CC
Confidence 53
No 390
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.29 E-value=1.6e-05 Score=58.77 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=72.1
Q ss_pred EEEEcCCCCChHHHHHHhhcCCcccccc-------cc--------------------ceeEEEEEE-------------c
Q 030289 19 ILMVGLDAAGKTTILYKLKLGEIVTTIP-------TI--------------------GFNVETVEY-------------K 58 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~-------t~--------------------~~~~~~~~~-------------~ 58 (180)
.++-|--|||||||+|+++.+......+ .+ |+--.+++. +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 4678899999999999998654211111 11 111112111 2
Q ss_pred CeEEEEEEcCCCCCChhhHHhhcc--------ccCEEEEEEECCChhh-HHHHHH-HHHHHhcccccCCCeEEEEEecCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQ--------NTHGLIFVVDSNDRER-IGEAKD-ELHRMLSEDELREAVLLVFANKQD 128 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D 128 (180)
.....++++.|--.-......+.. ..|+++-|+|+.+-.. +..... ...++ .. .=++++||+|
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi-a~------AD~ivlNK~D 156 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL-AF------ADVIVLNKTD 156 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH-Hh------CcEEEEeccc
Confidence 346778888884443333332222 2478999999875322 221222 22232 11 1389999999
Q ss_pred CCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 129 LPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+.++...+.+...+... +..++++.++.
T Consensus 157 lv~~~~l~~l~~~l~~l---np~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEELEALEARLRKL---NPRARIIETSY 184 (323)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCeEEEccc
Confidence 99876555444443322 23456777776
No 391
>PRK13796 GTPase YqeH; Provisional
Probab=98.29 E-value=3.4e-06 Score=63.67 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=55.3
Q ss_pred ChhhHHhhccccC-EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCc
Q 030289 73 IRPLWRHYFQNTH-GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQR 150 (180)
Q Consensus 73 ~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~ 150 (180)
+....... ...+ .+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+... .+.+... .....+..
T Consensus 59 ~~~~l~~i-~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~-l~~~~k~~ 129 (365)
T PRK13796 59 FLKLLNGI-GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNW-LRQEAKEL 129 (365)
T ss_pred HHHHHHhh-cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHH-HHHHHHhc
Confidence 33433333 3444 899999987632 11222222221 2578999999999965321 2222111 00111112
Q ss_pred ce---EEEEeeccCCCChHHHHHHHHHHh
Q 030289 151 RW---YIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 151 ~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
++ .++.+||+++.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 22 589999999999999999997653
No 392
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.28 E-value=3.5e-05 Score=59.95 Aligned_cols=81 Identities=16% Similarity=0.298 Sum_probs=51.6
Q ss_pred eEEEEEEcCCC-------------CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289 60 VSFTVWDVGGQ-------------DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK 126 (180)
Q Consensus 60 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK 126 (180)
-.+.++|.||- +....+...+..+.+++|+|+--- +.+.-..-..++.......+..-|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 36889999991 112456788889999999999321 12222223333434334456778999999
Q ss_pred CCCCCC--CCHhHHHhHhC
Q 030289 127 QDLPNA--MSVSEVTDKLG 143 (180)
Q Consensus 127 ~D~~~~--~~~~~~~~~~~ 143 (180)
.|+.+. .+++.+.+.+.
T Consensus 489 VDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred cchhhhccCCHHHHHHHHh
Confidence 999764 35666665543
No 393
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=8.2e-06 Score=61.38 Aligned_cols=84 Identities=20% Similarity=0.160 Sum_probs=55.7
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
..++|.+++|+++..+-....+..++.... ..+++.++|+||+|+.++. ++..+.+... ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~----~~~i~piIVLNK~DL~~~~--~~~~~~~~~~---~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAW----ESGAEPVIVLTKADLCEDA--EEKIAEVEAL---APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHH----HcCCCEEEEEEChhcCCCH--HHHHHHHHHh---CCCCcEEEEECC
Confidence 468899999999964333334444444432 2466778999999997642 1111111111 335689999999
Q ss_pred CCCChHHHHHHHH
Q 030289 161 SGQGLYEGLDWLS 173 (180)
Q Consensus 161 ~~~~i~~~~~~l~ 173 (180)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 394
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.27 E-value=1.6e-05 Score=52.33 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=35.4
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQD 128 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 128 (180)
++.+.++||+|... ....++..+|-++++..++--+...-.+- .. ....-++++||.|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~-------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GI-------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hH-------hhhcCEEEEeCCC
Confidence 56899999988542 22347788999999987752222111111 11 1223488899987
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1.4e-05 Score=60.19 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=64.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-c---ccc--cc------------------cceeEEEEE-----------Ec
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-V---TTI--PT------------------IGFNVETVE-----------YK 58 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~---~~~--~t------------------~~~~~~~~~-----------~~ 58 (180)
.+.-.++++|++|+||||++.+|...-. . ... -+ .++....+. ..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 4466889999999999999988864210 0 000 01 111121111 13
Q ss_pred CeEEEEEEcCCCCCChhhHHh---hcc---ccCEEEEEEECCC-hhhHHHHHHHHHHHhcccccCC-CeEEEEEecCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRH---YFQ---NTHGLIFVVDSND-RERIGEAKDELHRMLSEDELRE-AVLLVFANKQDLP 130 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~---~~~---~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~~iiiv~nK~D~~ 130 (180)
+..+.++||+|....+..... .+. ...-.++|++++. .+.+....+.+..........- .+--+|+||.|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 568999999997755433211 122 2345688998875 4444444444443321110000 1235777999976
Q ss_pred C
Q 030289 131 N 131 (180)
Q Consensus 131 ~ 131 (180)
.
T Consensus 295 ~ 295 (374)
T PRK14722 295 S 295 (374)
T ss_pred C
Confidence 5
No 396
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.22 E-value=1.7e-06 Score=66.16 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=41.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCccccccccc--eeEEEEEEcCeEEEEEEcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYKNVSFTVWDVGG 69 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~D~~G 69 (180)
...|+++|=|||||||+||.|.+.+.+....|-| -.+.++.+. -.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-PSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-CCceecCCCC
Confidence 5889999999999999999999999665555555 344555443 3688999999
No 397
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.21 E-value=1.7e-05 Score=59.66 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc-ccccc-----ccc------------------eeEEEEE-----------EcCe
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP-----TIG------------------FNVETVE-----------YKNV 60 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~-----t~~------------------~~~~~~~-----------~~~~ 60 (180)
+-.|+++||.||||||.+-.|...-. ..... |++ +....+. ..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 77889999999999999877753221 11111 111 1111111 1456
Q ss_pred EEEEEEcCCCCCChhh----HHhhcccc--CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 61 SFTVWDVGGQDKIRPL----WRHYFQNT--HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 61 ~~~i~D~~G~~~~~~~----~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
++.++||.|...++.. ...++.-+ .-+.+|++++.. .+.+...+..+.... .--+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~-----i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP-----IDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC-----cceeEEEcccccC
Confidence 8999999998876543 33343332 345677777633 234455555542211 1246789999765
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.19 E-value=1.2e-05 Score=55.05 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCCCChh---hHHhhc---cc---cCEEEEEEECC---Ch-hhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289 60 VSFTVWDVGGQDKIRP---LWRHYF---QN---THGLIFVVDSN---DR-ERIGEAKDELHRMLSEDELREAVLLVFANK 126 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~---~~~~~~---~~---~~~~i~v~d~~---~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK 126 (180)
-.+-++|+|||-+.-. ..+... ++ --++++++|+. +. .=+.+...-+...+. -.+|-|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~----lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS----LEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH----hcCcchhhhhH
Confidence 4689999999876421 122221 11 23567777764 11 111222222222222 35788999999
Q ss_pred CCCCCCCCHhHHHhHhCCC--------------------------ccCCc-ceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 127 QDLPNAMSVSEVTDKLGLH--------------------------SLRQR-RWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 127 ~D~~~~~~~~~~~~~~~~~--------------------------~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
.|+.......++...+... ..... -..|++....+.++|+.++..|-.++
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 9987653333322221100 00111 23677777777777887777765544
No 399
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=1.8e-05 Score=59.74 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=61.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC------C--cccc--------------ccccceeEEEEEE--------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG------E--IVTT--------------IPTIGFNVETVEY-------------- 57 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~------~--~~~~--------------~~t~~~~~~~~~~-------------- 57 (180)
.+...|+++|++|+||||++..|... + .... ....++.......
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 34568999999999999999888531 0 0000 0011111111110
Q ss_pred cCeEEEEEEcCCCCCChhh----HHhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPL----WRHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.+..+.++||+|....... ...++. ..+.+++|+|++... ..+...+..+... ..--+++||.|-..
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~-----~idglI~TKLDET~ 391 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI-----HIDGIVFTKFDETA 391 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC-----CCCEEEEEcccCCC
Confidence 1358999999996553221 222222 346788999875321 2333333333211 12367899999766
Q ss_pred C
Q 030289 132 A 132 (180)
Q Consensus 132 ~ 132 (180)
.
T Consensus 392 k 392 (436)
T PRK11889 392 S 392 (436)
T ss_pred C
Confidence 3
No 400
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.12 E-value=0.00011 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+=|.++||..+||||||.||..
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHH
Confidence 45689999999999999999953
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.11 E-value=4.5e-05 Score=51.52 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=38.1
Q ss_pred CeEEEEEEcCCCCCChhh----HHhhc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPL----WRHYF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+.++|+||....... ...+. ...+.+++|+|+..... ..+....+.... + ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 456899999997543221 11111 24899999999864432 223333332221 1 2567779999765
No 402
>PRK13695 putative NTPase; Provisional
Probab=98.06 E-value=0.00017 Score=48.82 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCChHHHHHHhh
Q 030289 17 MRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~ 37 (180)
+||++.|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999998864
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=3.2e-05 Score=60.41 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=60.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC--------C--cccc---c-----------cccceeEEEEE-----------Ec
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG--------E--IVTT---I-----------PTIGFNVETVE-----------YK 58 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~--------~--~~~~---~-----------~t~~~~~~~~~-----------~~ 58 (180)
...-.++|+|++|+||||++..|... + .... . ...++...... ..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 44678899999999999999888641 1 1110 0 00111111111 13
Q ss_pred CeEEEEEEcCCCCCChhhHHh---hcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRH---YFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+.++.++||+|.......... .+. .....++|++... +...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 568999999996544322111 111 1234677777753 22333333333321 134679999999754
No 404
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.05 E-value=5.4e-05 Score=45.62 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=44.4
Q ss_pred EEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhh-HHhhccccCEEEEEEECCC
Q 030289 19 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL-WRHYFQNTHGLIFVVDSND 95 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~~ 95 (180)
+++.|..|+||||+...+...-.. .+.....+ + ++.++|+++....... .......+|.++++++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~--~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLI--D--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEE--C--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch
Confidence 678899999999999887643211 11111111 1 8999999986543321 2456667899999998763
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=1.4e-05 Score=61.05 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=60.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-------ccccc--c---------------ccceeEEEE-----------EEcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-------IVTTI--P---------------TIGFNVETV-----------EYKN 59 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-------~~~~~--~---------------t~~~~~~~~-----------~~~~ 59 (180)
..-.++++|++|+||||++..|.+.. ..... . -.++..... ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 45589999999999999998775421 00000 0 011111111 1134
Q ss_pred eEEEEEEcCCCCCChhh----HHhhc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 60 VSFTVWDVGGQDKIRPL----WRHYF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
..+.++||+|....... ...+. ...+-.++|++++... +.+.+.+..+... -+--+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~-----~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH-----GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC-----CCCEEEEEeeeCCC
Confidence 67899999996654222 22221 1234578899987321 2333333333111 12367889999765
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=9.4e-05 Score=57.02 Aligned_cols=111 Identities=23% Similarity=0.283 Sum_probs=60.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC------C--cc---cccc-----------ccceeEEEE----E-----------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG------E--IV---TTIP-----------TIGFNVETV----E----------- 56 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~------~--~~---~~~~-----------t~~~~~~~~----~----------- 56 (180)
.+...|+++|++|+||||++..|... + .. .+.+ ..++..... +
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34678899999999999999777421 1 00 0001 011111100 0
Q ss_pred EcCeEEEEEEcCCCCCChhhH------HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 57 YKNVSFTVWDVGGQDKIRPLW------RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 57 ~~~~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
.....+.++||+|........ ......+|.+++|+|++... ........+... -...-+|+||.|..
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 023479999999976543221 11233578999999986532 222222222111 01236778999975
Q ss_pred C
Q 030289 131 N 131 (180)
Q Consensus 131 ~ 131 (180)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 4
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.01 E-value=2.2e-05 Score=53.32 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=59.5
Q ss_pred EEEEcCCCCChHHHHHHhhc-C---C----cccccc----------ccceeEEEEEE---------------------c-
Q 030289 19 ILMVGLDAAGKTTILYKLKL-G---E----IVTTIP----------TIGFNVETVEY---------------------K- 58 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~-~---~----~~~~~~----------t~~~~~~~~~~---------------------~- 58 (180)
++|.|.-|||||||++++.. . . ...... ..+.....+.. .
T Consensus 3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~ 82 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE 82 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence 57899999999999999983 1 1 000000 11122222211 1
Q ss_pred -CeEEEEEEcCCCCCChhh--HHhh---ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 59 -NVSFTVWDVGGQDKIRPL--WRHY---FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 59 -~~~~~i~D~~G~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
..++.++++.|...-... .... .-..+.++.|+|+.+-.........+..-+.. . =++++||+|+.++
T Consensus 83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~---A---DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF---A---DVIVLNKIDLVSD 156 (178)
T ss_dssp GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh---c---CEEEEeccccCCh
Confidence 346788899995444333 1111 12358899999997643333333333333232 1 3899999998775
Q ss_pred C
Q 030289 133 M 133 (180)
Q Consensus 133 ~ 133 (180)
.
T Consensus 157 ~ 157 (178)
T PF02492_consen 157 E 157 (178)
T ss_dssp H
T ss_pred h
Confidence 4
No 408
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.00 E-value=6.4e-06 Score=59.49 Aligned_cols=56 Identities=18% Similarity=0.341 Sum_probs=36.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-----cc--ccccceeEEE-EEE-cCeEEEEEEcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-----TT--IPTIGFNVET-VEY-KNVSFTVWDVGG 69 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-----~~--~~t~~~~~~~-~~~-~~~~~~i~D~~G 69 (180)
.-++++.|+|.||+|||||+|++...... .. .|.+...... +.+ ..-.+.+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 46899999999999999999988654311 11 1222222222 333 445688999999
No 409
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.97 E-value=4.4e-05 Score=56.55 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCCCChhhHHhhcc--------ccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 60 VSFTVWDVGGQDKIRPLWRHYFQ--------NTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
....++++.|...-......++. ..++++.|+|+.+.... ........++.. . =++++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~----A---D~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY----A---DRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh----C---CEEEEeccccC
Confidence 45788999997655554444322 24789999998643211 111111223321 1 38899999987
Q ss_pred CC
Q 030289 131 NA 132 (180)
Q Consensus 131 ~~ 132 (180)
++
T Consensus 164 ~~ 165 (318)
T PRK11537 164 GE 165 (318)
T ss_pred CH
Confidence 63
No 410
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.96 E-value=6.9e-05 Score=57.68 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=37.4
Q ss_pred CeEEEEEEcCCCCCChh----hHHhhcc---ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRP----LWRHYFQ---NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~----~~~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+.++||+|...... ....++. ...-+.+|++++.. ...+.+.+..+... . +--+++||.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----P-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----C-CCEEEEecccccc
Confidence 56899999999765531 2333333 23466788887532 12333333333111 1 2368899999754
No 411
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.94 E-value=4.4e-05 Score=41.13 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=29.1
Q ss_pred ccCEEEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCC
Q 030289 83 NTHGLIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQD 128 (180)
Q Consensus 83 ~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D 128 (180)
-.++++|++|++.. .+++.....+..+... ..+.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 46899999999864 5677777777777554 35899999999998
No 412
>PRK10867 signal recognition particle protein; Provisional
Probab=97.93 E-value=8.8e-05 Score=57.07 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=36.5
Q ss_pred CeEEEEEEcCCCCCChhh-H---Hhh--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPL-W---RHY--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
++.+.++||+|....... . ..+ .-..+.+++|+|+.... ........+.... + ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---G-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 467999999996543221 1 111 12467889999986432 2323333332111 1 1356779999644
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.93 E-value=6.5e-05 Score=57.73 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCCCChhhHHh----h--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRH----Y--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
++.+.++||||.......... + .-+.+.+++|+|+.... ........+.... + ..-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---C-CCEEEEeCccCcc
Confidence 467999999996544222111 1 22478899999987432 3333333332211 1 2356789999644
No 414
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.92 E-value=7.5e-05 Score=55.89 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
.++.|--|||||||+|+++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999753
No 415
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.92 E-value=7.8e-06 Score=60.84 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=40.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccccc--ccceeEEEEEEcCeEEEEEEcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP--TIGFNVETVEYKNVSFTVWDVGG 69 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G 69 (180)
.+.++++|+|-|++||||+||+|.........+ ++.-....+.. +-.+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L-dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL-DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-cCCceeccCCc
Confidence 678999999999999999999999877433333 33333333333 34789999999
No 416
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.90 E-value=1.1e-05 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 417
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=54.71 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.||+|+|+|||||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 418
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.00014 Score=61.89 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=62.1
Q ss_pred EEEEcCCCCChHHHHHHhhcCC-ccccc-----cccceeEEEEEEcCeEEEEEEcCCCC--------CChhhHHhhc---
Q 030289 19 ILMVGLDAAGKTTILYKLKLGE-IVTTI-----PTIGFNVETVEYKNVSFTVWDVGGQD--------KIRPLWRHYF--- 81 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~-~~~~~-----~t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~--- 81 (180)
-+|||++|+||||++..--.+. +.... ...+......- -..+-.++||.|.- .....|..++
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdww-f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWW-FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcc-cccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 4799999999999985443222 11110 11111111111 23356788999821 1233354442
Q ss_pred ------cccCEEEEEEECCC-----hhh----HHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 82 ------QNTHGLIFVVDSND-----RER----IGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 82 ------~~~~~~i~v~d~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+-.+++|+++|+.+ +.. ...+..-+.++... .....|+++++||.|+..
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 24699999999754 111 12233334444322 345789999999999876
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=97.88 E-value=1.2e-05 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988754
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=6.9e-05 Score=56.37 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=20.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-.++++|++|+||||++.++..
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455678999999999999988863
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=5.9e-05 Score=61.47 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccc------------ccc-----------ccceeEEEE-----------EEcCeE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVT------------TIP-----------TIGFNVETV-----------EYKNVS 61 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~------------~~~-----------t~~~~~~~~-----------~~~~~~ 61 (180)
--++|+|++|+||||++..|...- ... +.. -.++..... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 357899999999999998887422 000 000 011111110 113457
Q ss_pred EEEEEcCCCCCChhh----HHhh--ccccCEEEEEEECCC-hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 62 FTVWDVGGQDKIRPL----WRHY--FQNTHGLIFVVDSND-RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 62 ~~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+.++||+|....... .... ....+-.++|+|++. .+.+..+...+...... -+-=+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~-----~i~glIlTKLDEt~ 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGE-----DVDGCIITKLDEAT 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccC-----CCCEEEEeccCCCC
Confidence 999999995543221 1111 123456889999874 34444443333322100 12357799999765
No 422
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=4.2e-05 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.--++++|++||||||++..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34688999999999999988864
No 423
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.86 E-value=1.6e-05 Score=43.88 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHhh
Q 030289 18 RILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~ 37 (180)
..+|.|++|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999998875
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=5.3e-05 Score=57.70 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=59.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-c-----c---cc--------------ccccceeEEEE----------EEcCeEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-I-----V---TT--------------IPTIGFNVETV----------EYKNVSF 62 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~-----~---~~--------------~~t~~~~~~~~----------~~~~~~~ 62 (180)
..-++++|++||||||++.+|.... . . .. ....++..... ...+.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999998886311 0 0 00 00111211111 0136688
Q ss_pred EEEEcCCCCCChh-h---HHhhcc-----ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 63 TVWDVGGQDKIRP-L---WRHYFQ-----NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 63 ~i~D~~G~~~~~~-~---~~~~~~-----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.++||+|...... . +..++. ..+-.++|+|++... +.+......+ +.. -+--+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~~----~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ESL----NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cCC----CCCEEEEEcccCCC
Confidence 9999999653321 1 222222 234678899987432 2333333322 111 12367889999765
No 425
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.86 E-value=1.8e-05 Score=55.03 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCChHHHHHHh
Q 030289 17 MRILMVGLDAAGKTTILYKL 36 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l 36 (180)
|-.+||||||+||||.++-.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred cceEEEcCCCCCccchhhhH
Confidence 45689999999999998654
No 426
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=1.4e-05 Score=53.88 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+|+|+|++|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
No 427
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=0.0002 Score=51.82 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=62.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC-----C---ccc--------------cccccceeEEEEE--------------Ec
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG-----E---IVT--------------TIPTIGFNVETVE--------------YK 58 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~-----~---~~~--------------~~~t~~~~~~~~~--------------~~ 58 (180)
+.-+++++|++|+||||++..+... . ... +....++...... ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4479999999999999998777432 1 000 0011222211110 02
Q ss_pred CeEEEEEEcCCCCCChhh----HHhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPL----WRHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~----~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
+..+.++||+|....... +..++. +.+-+++|++++... +....++..+.. -.+--+++||.|....
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 568999999997643221 222222 346789999986321 233334444321 1224678999997663
No 428
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.80 E-value=0.00024 Score=43.99 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=55.8
Q ss_pred EEEEc-CCCCChHHHHHHhhcCCccccccccceeEEEEEE---cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC
Q 030289 19 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY---KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN 94 (180)
Q Consensus 19 i~i~G-~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 94 (180)
|+++| ..|+||||+.-.|...-.... +....-++. ....+.++|+|+... ......+..+|.++++.+.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~ 75 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD 75 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC
Confidence 34544 678999998766642211000 101111111 122899999998653 33455778899999999875
Q ss_pred ChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289 95 DRERIGEAKDELHRMLSEDELREAVLLVFANK 126 (180)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK 126 (180)
..++......+..+..........+.+|+|+
T Consensus 76 -~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 76 -LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4445555555544433221113456677775
No 429
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.78 E-value=0.00022 Score=43.82 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=49.0
Q ss_pred EEEEc-CCCCChHHHHHHhhcCCccccccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289 19 ILMVG-LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 19 i~i~G-~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (180)
|+|.| ..|+||||+...+...--.. +....-++. ..+.+.++|+|+.... .....+..+|.++++.+.+ .
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-----~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~ 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-----GKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-P 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-----CCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-H
Confidence 56777 56899999987665322111 111111111 1167999999996533 3446778899999999875 4
Q ss_pred hhHHHHHHHHH
Q 030289 97 ERIGEAKDELH 107 (180)
Q Consensus 97 ~~~~~~~~~~~ 107 (180)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 44555555443
No 430
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=6.5e-05 Score=56.03 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=54.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--------------cccc--------ccccc-eeEEE----------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--------------IVTT--------IPTIG-FNVET---------------- 54 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~~~--------~~t~~-~~~~~---------------- 54 (180)
.+.--|+++|..|+||||.+-.+..+- +... ....+ +.|..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 445567899999999999987775310 0000 00001 11111
Q ss_pred EEEcCeEEEEEEcCCCCCCh-hhHHhhc-----cccCEEEEEEECCChhhHHHHHHHHHHH
Q 030289 55 VEYKNVSFTVWDVGGQDKIR-PLWRHYF-----QNTHGLIFVVDSNDRERIGEAKDELHRM 109 (180)
Q Consensus 55 ~~~~~~~~~i~D~~G~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 109 (180)
+.-+++++.|+||.|...-. ++..... -+.|-+|+|.|++-...-+....-+.+-
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 11256789999999955432 2222211 2468999999997554444444444443
No 431
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00039 Score=52.84 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=61.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC---------Ccc---c---ccc-----------ccceeEEEEEE-----------c
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG---------EIV---T---TIP-----------TIGFNVETVEY-----------K 58 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~---------~~~---~---~~~-----------t~~~~~~~~~~-----------~ 58 (180)
...|+++|++|+||||.+..|... ..+ . +.. -.++.+..... .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457889999999999999877531 100 0 000 11121111111 4
Q ss_pred CeEEEEEEcCCCCCChh----hHHhhcccc--C-EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRP----LWRHYFQNT--H-GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
+..+.++||+|...... ....++..+ + -.++|+|++.. ...+...+..+... -+--+++||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~-----~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF-----SYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC-----CCCEEEEEeccCCC
Confidence 57899999999654332 122233322 3 58899998754 23444444444211 12467899999765
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.75 E-value=2.3e-05 Score=51.04 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHhhc
Q 030289 19 ILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~ 38 (180)
|+++|++||||||+++++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999873
No 433
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.73 E-value=0.00026 Score=46.09 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=58.7
Q ss_pred EEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhH
Q 030289 21 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERI 99 (180)
Q Consensus 21 i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 99 (180)
.-|.+|+|||++.-.+...-......+.-++.. ....-.+++.++|+|+.. .......+..+|.++++.+.+ ..++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~ 81 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSI 81 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHH
Confidence 456889999999766542110000000000000 000011789999999853 334456788999999999876 3334
Q ss_pred HHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 100 GEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
......+..+.... ...++.+|.|+++..
T Consensus 82 ~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 82 TDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 44333333332221 345678999999743
No 434
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00012 Score=53.75 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=61.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--------------ccc--------cccccceeEEEEE-E-------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--------------IVT--------TIPTIGFNVETVE-Y------------- 57 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~~--------~~~t~~~~~~~~~-~------------- 57 (180)
.+.+-|+|+|-+|+||||-|-.|...- ++. .....++....-. .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 347888999999999999998775310 000 0001111111100 0
Q ss_pred ---cCeEEEEEEcCCCCCChhh-------HHhhcccc-----CEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEE
Q 030289 58 ---KNVSFTVWDVGGQDKIRPL-------WRHYFQNT-----HGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLL 121 (180)
Q Consensus 58 ---~~~~~~i~D~~G~~~~~~~-------~~~~~~~~-----~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii 121 (180)
.++.+.++||+|.-..... ..+..+.. |-+++++|++-. +.++.... +...... -=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l-------~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGL-------DG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCC-------ce
Confidence 4678999999995433221 22222333 348888899754 44444443 3333222 25
Q ss_pred EEEecCCCCC
Q 030289 122 VFANKQDLPN 131 (180)
Q Consensus 122 iv~nK~D~~~ 131 (180)
+++||.|...
T Consensus 289 iIlTKlDgtA 298 (340)
T COG0552 289 IILTKLDGTA 298 (340)
T ss_pred EEEEecccCC
Confidence 7789999543
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00018 Score=54.53 Aligned_cols=112 Identities=23% Similarity=0.184 Sum_probs=63.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC------C-----cccccc-----------ccceeEEEEEE-------------
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG------E-----IVTTIP-----------TIGFNVETVEY------------- 57 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~------~-----~~~~~~-----------t~~~~~~~~~~------------- 57 (180)
+.++..|+++|..|+||||.+-.|... + ...|.| .+++.+.....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 456788999999999999998776431 1 111111 11111111110
Q ss_pred ----cCeEEEEEEcCCCCCChhhHHh------hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289 58 ----KNVSFTVWDVGGQDKIRPLWRH------YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127 (180)
Q Consensus 58 ----~~~~~~i~D~~G~~~~~~~~~~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~ 127 (180)
..+.+.|+||+|....+...-. -.-+.|-+++|+|+.-...-....+-+.+.+.. -=+|+||.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i-------tGvIlTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI-------TGVILTKL 249 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC-------ceEEEEcc
Confidence 2358999999997665433211 123578899999987544333333333333222 24667888
Q ss_pred CCCC
Q 030289 128 DLPN 131 (180)
Q Consensus 128 D~~~ 131 (180)
|...
T Consensus 250 DGda 253 (451)
T COG0541 250 DGDA 253 (451)
T ss_pred cCCC
Confidence 8654
No 436
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.72 E-value=1.9e-05 Score=58.93 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=49.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEE-EEEcCeEEEEEEcCCCCCC--hhhHHhhccccCEEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET-VEYKNVSFTVWDVGGQDKI--RPLWRHYFQNTHGLIF 89 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~--~~~~~~~~~~~~~~i~ 89 (180)
.++++.|.|||=|++||||+||.|-..+.....|--|..... +-.--..+-++|+||--.- ..-....+ .+++-
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~ivL---kGvVR 380 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KGVVR 380 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHHh---hceee
Confidence 578899999999999999999999887744433322211100 0001236788999993321 22222222 35666
Q ss_pred EEECCChh
Q 030289 90 VVDSNDRE 97 (180)
Q Consensus 90 v~d~~~~~ 97 (180)
|=++.+++
T Consensus 381 Venv~~pe 388 (572)
T KOG2423|consen 381 VENVKNPE 388 (572)
T ss_pred eeecCCHH
Confidence 66666654
No 437
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.72 E-value=1.8e-05 Score=52.94 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 438
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.71 E-value=0.00014 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..-+.|+|++|+|||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346789999999999999999844
No 439
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.71 E-value=3.4e-05 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++|+|++|+|||||++.+++..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 34578999999999999999888665
No 440
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.69 E-value=0.00013 Score=52.99 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=58.4
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.-.-+.|-+++|+.+.+|+--..+..-+...... .++.-++|+||+|+.++..... .+. .......+.+++.+|
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~-~~~--~~~y~~~gy~v~~~s 148 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAV-KEL--LREYEDIGYPVLFVS 148 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHH-HHH--HHHHHhCCeeEEEec
Confidence 3334577788888877765333333333333232 4666788899999998655442 111 112234577899999
Q ss_pred ccCCCChHHHHHHHHHH
Q 030289 159 ATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~ 175 (180)
++++++++++.+.+...
T Consensus 149 ~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 149 AKNGDGLEELAELLAGK 165 (301)
T ss_pred CcCcccHHHHHHHhcCC
Confidence 99999999999887654
No 441
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.68 E-value=4.2e-05 Score=43.46 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.68 E-value=3.5e-05 Score=53.89 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (180)
-++|+||+|||||||+|-+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999886544
No 443
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=3.9e-05 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+.=.++|+||+|||||||+..+.+=+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 34468999999999999998887554
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.66 E-value=6.9e-05 Score=50.38 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
||.+.|++|+|||||++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=3.7e-05 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
=|+++|++|||||||+|-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999888653
No 446
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.66 E-value=5e-05 Score=53.69 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.1
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.+....|+++|+|++|||||+|+-.++...
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 345678999999999999999998887543
No 447
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.66 E-value=0.00067 Score=43.82 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..-.+++.|++|+|||++++.+...-
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35579999999999999999988544
No 448
>PRK01889 GTPase RsgA; Reviewed
Probab=97.64 E-value=8.1e-05 Score=56.08 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 5 ISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 5 ~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+..+...++ ..-+++++|.+|+|||||+|.+++..
T Consensus 185 l~~L~~~L~-~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 185 LDVLAAWLS-GGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred HHHHHHHhh-cCCEEEEECCCCccHHHHHHHHHHhc
Confidence 455555553 34589999999999999999998654
No 449
>PRK14530 adenylate kinase; Provisional
Probab=97.64 E-value=5.2e-05 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..+|+|+|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998863
No 450
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.63 E-value=5.2e-05 Score=52.86 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..+.+.|+|.|++|||||||.+.|..
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999988875
No 451
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.61 E-value=0.00018 Score=47.90 Aligned_cols=48 Identities=33% Similarity=0.486 Sum_probs=30.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
.+.|+|.+|+|||||++++...- ...+.....+..+...+.+ |.+|..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~D 50 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKD 50 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccch
Confidence 47899999999999999998432 2223334444444433333 666643
No 452
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.60 E-value=5.4e-05 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.+..-|+|+|++|||||||++.+.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 45567799999999999999998874
No 453
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.59 E-value=6e-05 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 454
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.59 E-value=5.3e-05 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
--++++||+|||||||++.+.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3468999999999999999875
No 455
>PRK06217 hypothetical protein; Validated
Probab=97.59 E-value=6e-05 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988743
No 456
>PRK03839 putative kinase; Provisional
Probab=97.57 E-value=6.7e-05 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
+|+++|++||||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999888643
No 457
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.56 E-value=5.9e-05 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 458
>PRK08233 hypothetical protein; Provisional
Probab=97.56 E-value=7.7e-05 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.+-|+|.|++|||||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3467889999999999999999743
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.55 E-value=8.9e-05 Score=47.60 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.-.++++|++|+||||++..+...-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999998655
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.55 E-value=7.2e-05 Score=48.59 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 461
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=6.8e-05 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
=-++++||+|+|||||+..+++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999986
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.54 E-value=7.6e-05 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~ 37 (180)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3458999999999999998876
No 463
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.54 E-value=0.0019 Score=43.13 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=90.8
Q ss_pred HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCC---CCCChhhHHhhcc
Q 030289 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGG---QDKIRPLWRHYFQ 82 (180)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~ 82 (180)
..+...+..+.-.|+++|..+.++..|..++...... .++++.-... ..+.... =.
T Consensus 5 ~p~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-----------------~~l~Vh~a~sLPLp~e~~~l----Rp 63 (176)
T PF11111_consen 5 RPFDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE-----------------FKLKVHLAKSLPLPSENNNL----RP 63 (176)
T ss_pred cccccCCCcceeEEEEecccHHHHHHHHHHHHhhccc-----------------eeEEEEEeccCCCcccccCC----Cc
Confidence 3445566678899999999999999999999853311 1111111111 0111111 23
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
+.|.++|++|.+...+++.....+..+-......++.++.-.-..........+++.+. +..++.|++.+.-.+.
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kl-----a~~y~~plL~~~le~~ 138 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKL-----AATYNSPLLFADLENE 138 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHH-----HHHhCCCEEEeecccc
Confidence 58999999999999999999988877755444444333333333333334445554432 2345567888877777
Q ss_pred CChHHHHHHHHHHhh
Q 030289 163 QGLYEGLDWLSSNVS 177 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~ 177 (180)
++...+-+.+.+.++
T Consensus 139 ~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 139 EGRTSLAQRLLRMLQ 153 (176)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777777777777654
No 464
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.54 E-value=7.5e-05 Score=47.76 Aligned_cols=21 Identities=38% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998854
No 465
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=6.3e-05 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..-+++.||+|||||||+++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999999998665
No 466
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.52 E-value=7.8e-05 Score=47.50 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988754
No 467
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.52 E-value=8.6e-05 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-.++++|++|+|||||++.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4456789999999999999998863
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.51 E-value=9.8e-05 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+..-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45566889999999999999999743
No 469
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.51 E-value=8.5e-05 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=.++|+|++|+|||||+|-+.+-
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 446899999999999999987653
No 470
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.51 E-value=7.9e-05 Score=48.35 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=23.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...||+|.|.||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 6789999999999999999999973
No 471
>PRK06547 hypothetical protein; Provisional
Probab=97.50 E-value=0.00016 Score=48.80 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=24.5
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.........|+|.|++||||||+.+.|...
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344567788889999999999999998753
No 472
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.50 E-value=8.8e-05 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
-|+++|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999864
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=9e-05 Score=50.26 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=22.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
...-.++++|++|+|||||++.+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345578999999999999999888654
No 474
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=9e-05 Score=51.82 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
-|+++|++|+|||||+..+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999988875
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.49 E-value=8.3e-05 Score=51.36 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.48 E-value=0.00011 Score=50.20 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=24.6
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+... +..-.++|+|++|+|||||++.+++--
T Consensus 19 ~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 19 WLAV-EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHH-hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444 446789999999999999999988543
No 477
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00011 Score=51.28 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
. .++++|++|+|||||++.+.+-.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5 88999999999999999888643
No 478
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.47 E-value=0.00011 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=|+++||+|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458899999999999999997643
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.46 E-value=0.00011 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999888653
No 480
>PRK13949 shikimate kinase; Provisional
Probab=97.45 E-value=0.00012 Score=49.33 Aligned_cols=21 Identities=48% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
+|+++|++||||||+...|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988764
No 481
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00012 Score=51.99 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998654
No 482
>PRK14531 adenylate kinase; Provisional
Probab=97.45 E-value=0.00013 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.+|+++|+|||||||+..+|..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999988864
No 483
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.45 E-value=0.00012 Score=47.49 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998863
No 484
>PRK14532 adenylate kinase; Provisional
Probab=97.44 E-value=0.00012 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
++|+++|+|||||||+..+|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998874
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.44 E-value=0.00012 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999888653
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.44 E-value=0.00013 Score=50.96 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..-.++++|++|+|||||++.+.+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999888654
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.44 E-value=0.00012 Score=50.28 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++|+|++|+|||||++.+.+-.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999998887654
No 488
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.44 E-value=0.00014 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~ 37 (180)
...|+++|++||||||+++.+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999887
No 489
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.43 E-value=0.0001 Score=51.86 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHhhc
Q 030289 19 ILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~ 38 (180)
|+|.|++|||||||++.|..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999988874
No 490
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.43 E-value=0.00013 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.180 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999888654
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.42 E-value=0.00016 Score=50.19 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+..--|+|+|++|||||||++.|...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567999999999999999988754
No 492
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.00013 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=.+|+||+|+|||||+..|++..
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCcc
Confidence 36799999999999999998754
No 493
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00014 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468899999999999999888643
No 494
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.42 E-value=0.00093 Score=48.73 Aligned_cols=105 Identities=9% Similarity=0.105 Sum_probs=59.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCC---------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDK--------------------- 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------------------- 72 (180)
.+-.+.+++|++|-|||+++++|...-.....+. ...+.+..+.+|....
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~ 129 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR 129 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC
Confidence 3446799999999999999999986442221111 0123555666654111
Q ss_pred ---ChhhHHhhccccCEEEEEEECC-C--hhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289 73 ---IRPLWRHYFQNTHGLIFVVDSN-D--RERIGEAKDELHRMLSEDELREAVLLVFANKQ 127 (180)
Q Consensus 73 ---~~~~~~~~~~~~~~~i~v~d~~-~--~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~ 127 (180)
........++....=++++|=- + ..+.......+..+...-+.-.+|+|.||++-
T Consensus 130 ~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 130 VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 1222345566778889999832 1 12222333333322222234578999998763
No 495
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.41 E-value=0.00016 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..++|+|+|+|||||||+...|..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988854
No 496
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.41 E-value=0.00014 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999998887643
No 497
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.41 E-value=0.0018 Score=46.86 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=25.2
Q ss_pred HhhhcccCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 8 LKMLFARKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 8 ~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+........=.|+|.|++|+||||+++.+...-
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 344555555569999999999999999887543
No 498
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00014 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999888653
No 499
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0015 Score=46.19 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=60.0
Q ss_pred cEEEEEcCCCC--ChHHHHHHhhcCCcccccc---ccceeEEEEEEcC--eEEEEEEcCC-CCCChhhHHhhccccCEEE
Q 030289 17 MRILMVGLDAA--GKTTILYKLKLGEIVTTIP---TIGFNVETVEYKN--VSFTVWDVGG-QDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 17 ~~i~i~G~~~~--GKStli~~l~~~~~~~~~~---t~~~~~~~~~~~~--~~~~i~D~~G-~~~~~~~~~~~~~~~~~~i 88 (180)
.-++++|.+|+ ||.+|.++|....+..... .+.+.--+++.+- ..+.+.-.+- ++++.. .........+++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~v 83 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAFV 83 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeEE
Confidence 34689999999 9999999998766332221 1111111111110 0111111111 111111 111223356789
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPN 131 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~ 131 (180)
.+||.+....+..+..|+..- ...+.. ++.++||.|..+
T Consensus 84 mvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvp 123 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVP 123 (418)
T ss_pred EEEeccchhhhHHHHhhcccc----ccccchhheeccccccccc
Confidence 999999888888888886532 222222 456779999654
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.41 E-value=0.00014 Score=52.74 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
+.+-+|+|.|++|+||||+++.+...-
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred ccceEEEEECCCccccchHHHHHhhhc
Confidence 348999999999999999999998544
Done!