Query 030289
Match_columns 180
No_of_seqs 125 out of 1823
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 18:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zj6_A ADP-ribosylation factor 100.0 6.3E-39 2.2E-43 218.7 20.5 179 1-179 1-179 (187)
2 1moz_A ARL1, ADP-ribosylation 100.0 4E-39 1.4E-43 218.7 19.1 179 1-179 1-181 (183)
3 2x77_A ADP-ribosylation factor 100.0 4.5E-39 1.5E-43 219.7 17.9 179 1-179 3-185 (189)
4 1ksh_A ARF-like protein 2; sma 100.0 1.8E-38 6E-43 216.2 20.4 178 1-179 3-181 (186)
5 2b6h_A ADP-ribosylation factor 100.0 4.1E-38 1.4E-42 215.6 20.8 171 9-179 22-192 (192)
6 1upt_A ARL1, ADP-ribosylation 100.0 2.1E-37 7.3E-42 207.9 21.5 167 14-180 5-171 (171)
7 1fzq_A ADP-ribosylation factor 100.0 1.3E-37 4.4E-42 211.3 19.6 166 14-179 14-179 (181)
8 4dkx_A RAS-related protein RAB 100.0 8.5E-39 2.9E-43 222.2 13.9 161 12-178 9-176 (216)
9 1r8s_A ADP-ribosylation factor 100.0 1.9E-37 6.5E-42 206.9 19.6 163 17-179 1-163 (164)
10 1zd9_A ADP-ribosylation factor 100.0 1.1E-36 3.6E-41 207.9 19.0 171 9-179 15-186 (188)
11 1f6b_A SAR1; gtpases, N-termin 100.0 2.3E-36 7.7E-41 207.9 18.9 165 12-176 21-197 (198)
12 2h17_A ADP-ribosylation factor 100.0 1.7E-36 5.8E-41 205.7 17.9 168 9-176 14-181 (181)
13 1m2o_B GTP-binding protein SAR 100.0 5.8E-36 2E-40 204.6 20.1 165 12-176 19-190 (190)
14 4bas_A ADP-ribosylation factor 100.0 2.9E-36 9.9E-41 207.1 17.8 171 9-179 10-190 (199)
15 2h57_A ADP-ribosylation factor 100.0 7.5E-36 2.6E-40 203.9 19.6 170 9-178 14-187 (190)
16 3o47_A ADP-ribosylation factor 100.0 3.4E-35 1.2E-39 216.0 19.6 169 11-179 160-328 (329)
17 3kkq_A RAS-related protein M-R 100.0 1.9E-34 6.4E-39 195.7 14.6 166 9-179 11-183 (183)
18 3q72_A GTP-binding protein RAD 100.0 4.3E-34 1.5E-38 191.0 15.6 160 15-179 1-165 (166)
19 3lvq_E ARF-GAP with SH3 domain 100.0 1.5E-33 5.2E-38 217.8 20.0 168 12-179 318-485 (497)
20 1ek0_A Protein (GTP-binding pr 100.0 2E-34 7E-39 193.0 11.3 164 15-179 2-170 (170)
21 1c1y_A RAS-related protein RAP 100.0 2.3E-33 7.9E-38 187.4 15.2 159 14-177 1-166 (167)
22 2nzj_A GTP-binding protein REM 100.0 2.8E-33 9.6E-38 188.4 15.4 161 14-179 2-170 (175)
23 1u8z_A RAS-related protein RAL 100.0 2.6E-33 9E-38 187.1 14.9 161 14-179 2-168 (168)
24 2bov_A RAla, RAS-related prote 100.0 4.5E-33 1.5E-37 192.1 16.4 167 7-178 5-177 (206)
25 3ihw_A Centg3; RAS, centaurin, 100.0 1.6E-32 5.3E-37 186.7 18.4 161 9-179 13-181 (184)
26 3t5g_A GTP-binding protein RHE 100.0 1.8E-33 6.2E-38 190.5 13.7 161 14-179 4-170 (181)
27 3oes_A GTPase rhebl1; small GT 100.0 1E-33 3.4E-38 195.0 12.2 168 9-179 17-188 (201)
28 2fn4_A P23, RAS-related protei 100.0 3.3E-33 1.1E-37 188.9 14.3 163 12-179 5-173 (181)
29 1r2q_A RAS-related protein RAB 100.0 3.8E-33 1.3E-37 186.8 14.3 160 13-178 3-169 (170)
30 1z06_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 193.0 11.7 165 9-178 13-188 (189)
31 2y8e_A RAB-protein 6, GH09086P 100.0 2.2E-33 7.4E-38 189.5 12.3 168 6-179 4-178 (179)
32 2hxs_A RAB-26, RAS-related pro 100.0 3.6E-33 1.2E-37 188.4 13.4 162 13-179 3-174 (178)
33 3t1o_A Gliding protein MGLA; G 100.0 2.4E-33 8.1E-38 192.2 12.6 163 10-179 8-193 (198)
34 1kao_A RAP2A; GTP-binding prot 100.0 3.5E-33 1.2E-37 186.4 13.0 160 14-178 1-166 (167)
35 1z0f_A RAB14, member RAS oncog 100.0 7E-33 2.4E-37 187.0 14.6 161 12-178 11-178 (179)
36 2ew1_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 191.9 13.5 160 13-178 23-189 (201)
37 2g6b_A RAS-related protein RAB 100.0 9.9E-33 3.4E-37 186.6 15.0 162 12-179 6-175 (180)
38 2hup_A RAS-related protein RAB 100.0 6.9E-33 2.4E-37 190.9 14.3 161 13-179 26-194 (201)
39 3bc1_A RAS-related protein RAB 100.0 7.7E-33 2.6E-37 189.1 14.2 162 13-179 8-186 (195)
40 2a9k_A RAS-related protein RAL 100.0 1.3E-32 4.4E-37 187.0 15.1 163 12-179 14-182 (187)
41 2fu5_C RAS-related protein RAB 100.0 3.3E-33 1.1E-37 189.6 12.0 159 14-178 6-171 (183)
42 1x3s_A RAS-related protein RAB 100.0 2.7E-32 9.2E-37 186.7 16.7 163 12-179 11-179 (195)
43 3cbq_A GTP-binding protein REM 100.0 1.1E-32 3.9E-37 189.0 14.7 163 12-179 19-189 (195)
44 2efe_B Small GTP-binding prote 100.0 1.8E-32 6.2E-37 185.5 15.5 163 11-179 7-176 (181)
45 3tkl_A RAS-related protein RAB 100.0 1.7E-32 5.9E-37 187.8 15.5 160 14-179 14-180 (196)
46 2gf9_A RAS-related protein RAB 100.0 9.8E-33 3.4E-37 188.3 14.0 162 12-179 18-186 (189)
47 1z08_A RAS-related protein RAB 100.0 9.6E-33 3.3E-37 185.0 13.7 160 13-178 3-169 (170)
48 3tw8_B RAS-related protein RAB 100.0 9.8E-33 3.4E-37 186.6 13.8 159 13-178 6-171 (181)
49 2oil_A CATX-8, RAS-related pro 100.0 2.2E-32 7.4E-37 187.1 15.7 161 13-179 22-189 (193)
50 2a5j_A RAS-related protein RAB 100.0 4.2E-33 1.4E-37 190.5 12.0 164 10-179 15-185 (191)
51 3q85_A GTP-binding protein REM 100.0 1.1E-32 3.9E-37 184.6 13.8 159 16-179 2-168 (169)
52 4dsu_A GTPase KRAS, isoform 2B 100.0 3E-32 1E-36 185.5 16.0 161 14-178 2-166 (189)
53 2g3y_A GTP-binding protein GEM 100.0 1.5E-32 5.2E-37 190.2 14.4 162 12-178 33-203 (211)
54 1zbd_A Rabphilin-3A; G protein 100.0 3.9E-32 1.3E-36 187.2 16.3 159 14-178 6-171 (203)
55 2fg5_A RAB-22B, RAS-related pr 100.0 1.6E-32 5.5E-37 187.7 14.2 162 12-179 19-187 (192)
56 2atv_A RERG, RAS-like estrogen 100.0 1.7E-32 5.7E-37 188.2 14.3 164 10-179 22-192 (196)
57 1z2a_A RAS-related protein RAB 100.0 4.3E-33 1.5E-37 186.3 11.0 159 14-179 3-168 (168)
58 2p5s_A RAS and EF-hand domain 100.0 1.1E-32 3.8E-37 189.5 13.4 165 9-179 21-198 (199)
59 2bme_A RAB4A, RAS-related prot 100.0 1.7E-32 5.7E-37 186.5 14.1 159 14-178 8-173 (186)
60 1z0j_A RAB-22, RAS-related pro 100.0 2.3E-32 7.9E-37 183.0 14.5 159 14-178 4-169 (170)
61 1wms_A RAB-9, RAB9, RAS-relate 100.0 4.1E-32 1.4E-36 183.1 15.6 163 13-179 4-175 (177)
62 2ce2_X GTPase HRAS; signaling 100.0 1.1E-31 3.6E-36 178.9 17.4 160 15-179 2-166 (166)
63 3q3j_B RHO-related GTP-binding 100.0 1.8E-33 6.1E-38 195.6 8.9 162 11-179 22-204 (214)
64 3c5c_A RAS-like protein 12; GD 100.0 1.1E-32 3.7E-37 187.9 12.2 162 12-179 17-187 (187)
65 2bcg_Y Protein YP2, GTP-bindin 100.0 3.6E-32 1.2E-36 187.8 14.9 160 14-179 6-172 (206)
66 3dz8_A RAS-related protein RAB 100.0 3.8E-33 1.3E-37 190.7 9.9 161 13-179 20-187 (191)
67 2f7s_A C25KG, RAS-related prot 100.0 8.2E-33 2.8E-37 192.5 11.5 161 13-178 22-199 (217)
68 3reg_A RHO-like small GTPase; 100.0 8E-33 2.7E-37 189.5 11.1 160 13-179 20-189 (194)
69 2il1_A RAB12; G-protein, GDP, 100.0 3.4E-32 1.1E-36 186.2 14.1 164 11-179 21-191 (192)
70 1g16_A RAS-related protein SEC 100.0 2.7E-32 9.1E-37 182.8 13.3 159 15-179 2-166 (170)
71 2fh5_B SR-beta, signal recogni 100.0 1.8E-31 6.1E-36 185.4 17.6 164 13-176 4-214 (214)
72 2erx_A GTP-binding protein DI- 100.0 3.2E-32 1.1E-36 182.6 13.2 160 15-179 2-168 (172)
73 3clv_A RAB5 protein, putative; 100.0 2E-31 6.8E-36 183.5 17.2 159 13-179 4-205 (208)
74 2iwr_A Centaurin gamma 1; ANK 100.0 3.9E-32 1.3E-36 183.5 13.2 155 14-178 5-169 (178)
75 3gj0_A GTP-binding nuclear pro 100.0 9.1E-33 3.1E-37 192.8 10.1 164 9-179 8-176 (221)
76 2atx_A Small GTP binding prote 100.0 9.7E-33 3.3E-37 189.0 9.3 165 12-178 14-193 (194)
77 3cpj_B GTP-binding protein YPT 100.0 4.1E-32 1.4E-36 189.8 12.4 160 14-179 11-177 (223)
78 2o52_A RAS-related protein RAB 100.0 2.1E-32 7E-37 188.4 10.7 159 14-178 23-188 (200)
79 3con_A GTPase NRAS; structural 100.0 3E-31 1E-35 181.0 16.3 164 11-179 16-184 (190)
80 4djt_A GTP-binding nuclear pro 100.0 9.5E-32 3.2E-36 187.2 13.6 161 13-179 8-176 (218)
81 1vg8_A RAS-related protein RAB 100.0 1E-31 3.4E-36 185.6 13.5 162 13-178 5-175 (207)
82 1ky3_A GTP-binding protein YPT 100.0 5.5E-32 1.9E-36 183.1 11.8 163 13-179 5-179 (182)
83 2q3h_A RAS homolog gene family 100.0 2.5E-32 8.6E-37 187.9 10.2 162 10-178 14-195 (201)
84 2fv8_A H6, RHO-related GTP-bin 100.0 4.7E-31 1.6E-35 182.4 16.3 165 13-179 22-201 (207)
85 2j1l_A RHO-related GTP-binding 100.0 2.5E-31 8.5E-36 184.8 14.8 166 12-179 30-210 (214)
86 2yc2_C IFT27, small RAB-relate 100.0 1.7E-32 5.9E-37 189.4 8.8 160 14-178 18-192 (208)
87 2gf0_A GTP-binding protein DI- 100.0 3.8E-31 1.3E-35 181.5 14.9 162 13-179 5-172 (199)
88 1m7b_A RND3/RHOE small GTP-bin 100.0 2.4E-31 8.3E-36 180.7 13.7 160 13-179 4-184 (184)
89 3cph_A RAS-related protein SEC 100.0 4E-31 1.4E-35 183.3 14.8 162 11-178 15-182 (213)
90 2gco_A H9, RHO-related GTP-bin 100.0 8.9E-32 3.1E-36 185.3 10.9 166 11-178 20-200 (201)
91 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.1E-31 1.1E-35 180.0 13.2 164 14-179 3-181 (186)
92 3llu_A RAS-related GTP-binding 100.0 8.6E-32 2.9E-36 184.7 10.4 165 9-176 13-195 (196)
93 4gzl_A RAS-related C3 botulinu 100.0 3.1E-31 1.1E-35 183.0 13.2 163 12-176 26-203 (204)
94 2cjw_A GTP-binding protein GEM 100.0 3.6E-31 1.2E-35 181.1 12.7 161 13-178 3-172 (192)
95 2j0v_A RAC-like GTP-binding pr 100.0 8E-31 2.8E-35 181.8 14.4 159 14-179 7-181 (212)
96 3bwd_D RAC-like GTP-binding pr 100.0 2.2E-31 7.6E-36 180.2 11.2 159 13-178 5-181 (182)
97 1gwn_A RHO-related GTP-binding 100.0 7E-31 2.4E-35 181.4 13.6 160 13-179 25-205 (205)
98 2zej_A Dardarin, leucine-rich 100.0 9.2E-32 3.2E-36 182.8 8.1 163 15-179 1-179 (184)
99 3l0i_B RAS-related protein RAB 100.0 3.8E-33 1.3E-37 191.9 1.3 162 14-179 31-197 (199)
100 3r7w_B Gtpase2, GTP-binding pr 100.0 1.7E-30 5.8E-35 188.4 11.7 158 18-179 1-175 (331)
101 2lkc_A Translation initiation 100.0 2.5E-29 8.7E-34 169.5 15.4 162 12-179 4-172 (178)
102 2qu8_A Putative nucleolar GTP- 100.0 3.3E-29 1.1E-33 175.6 15.3 163 14-178 27-205 (228)
103 3th5_A RAS-related C3 botulinu 99.9 6E-32 2E-36 186.5 0.0 164 11-176 25-203 (204)
104 2wji_A Ferrous iron transport 100.0 1.8E-28 6E-33 163.9 15.4 148 15-177 2-164 (165)
105 2gj8_A MNME, tRNA modification 100.0 1.2E-28 4.1E-33 165.8 13.0 152 15-178 3-166 (172)
106 1svi_A GTP-binding protein YSX 100.0 3.5E-29 1.2E-33 171.3 10.6 163 9-177 16-194 (195)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 4.5E-29 1.6E-33 181.9 11.4 162 15-177 2-180 (307)
108 2dyk_A GTP-binding protein; GT 100.0 1.7E-28 5.7E-33 162.9 12.0 147 17-176 2-160 (161)
109 3pqc_A Probable GTP-binding pr 100.0 7E-29 2.4E-33 169.6 9.9 164 9-179 16-195 (195)
110 2cxx_A Probable GTP-binding pr 100.0 3.2E-29 1.1E-33 170.7 7.3 160 17-179 2-185 (190)
111 2wkq_A NPH1-1, RAS-related C3 100.0 1.2E-27 4.1E-32 176.1 14.9 165 13-179 152-331 (332)
112 3c5h_A Glucocorticoid receptor 100.0 4.6E-29 1.6E-33 177.6 6.5 163 11-177 14-254 (255)
113 2wjg_A FEOB, ferrous iron tran 100.0 2.5E-27 8.7E-32 161.1 14.6 152 13-179 4-170 (188)
114 2f9l_A RAB11B, member RAS onco 100.0 2E-27 6.8E-32 163.3 13.5 159 14-178 3-168 (199)
115 3iev_A GTP-binding protein ERA 99.9 2.1E-26 7.3E-31 167.9 15.3 161 12-178 6-182 (308)
116 3a1s_A Iron(II) transport prot 99.9 2.6E-26 8.9E-31 163.5 15.1 150 13-177 2-166 (258)
117 1oix_A RAS-related protein RAB 99.9 1.9E-26 6.5E-31 157.5 13.7 157 14-176 27-190 (191)
118 4dhe_A Probable GTP-binding pr 99.9 2.4E-27 8.1E-32 165.5 9.1 166 9-179 22-212 (223)
119 1wf3_A GTP-binding protein; GT 99.9 4.9E-26 1.7E-30 165.2 14.8 156 14-178 5-173 (301)
120 3i8s_A Ferrous iron transport 99.9 1.6E-26 5.5E-31 166.0 11.7 150 14-178 1-169 (274)
121 3dpu_A RAB family protein; roc 99.9 1.2E-26 4.2E-31 180.6 11.3 158 12-179 37-209 (535)
122 3iby_A Ferrous iron transport 99.9 3.6E-26 1.2E-30 162.5 12.1 144 17-175 2-164 (256)
123 2hjg_A GTP-binding protein ENG 99.9 1.7E-26 5.7E-31 175.8 10.8 159 15-178 174-349 (436)
124 3b1v_A Ferrous iron uptake tra 99.9 6.1E-26 2.1E-30 162.5 13.0 147 15-177 2-163 (272)
125 3k53_A Ferrous iron transport 99.9 4.5E-25 1.5E-29 158.3 15.6 151 14-178 1-166 (271)
126 1nrj_B SR-beta, signal recogni 99.9 2.1E-27 7.3E-32 165.2 3.2 118 13-135 9-138 (218)
127 3gee_A MNME, tRNA modification 99.9 1.5E-25 5.2E-30 171.3 12.6 151 13-177 230-397 (476)
128 3ohm_A Guanine nucleotide-bind 99.9 5.2E-25 1.8E-29 160.5 13.9 135 45-179 152-319 (327)
129 3qq5_A Small GTP-binding prote 99.9 4.2E-26 1.4E-30 171.8 8.3 155 11-177 29-195 (423)
130 2e87_A Hypothetical protein PH 99.9 1.9E-24 6.3E-29 160.7 16.3 158 14-178 165-336 (357)
131 1xzp_A Probable tRNA modificat 99.9 4.3E-25 1.5E-29 168.9 13.0 151 14-177 241-404 (482)
132 1cip_A Protein (guanine nucleo 99.9 1.5E-25 5.1E-30 165.4 10.0 135 45-179 178-345 (353)
133 4dcu_A GTP-binding protein ENG 99.9 1.7E-25 5.7E-30 171.1 10.1 160 14-178 193-369 (456)
134 1lnz_A SPO0B-associated GTP-bi 99.9 3.1E-25 1.1E-29 163.2 11.0 157 17-179 159-331 (342)
135 1zcb_A G alpha I/13; GTP-bindi 99.9 8.5E-25 2.9E-29 161.9 13.0 132 47-178 188-353 (362)
136 3sjy_A Translation initiation 99.9 1.1E-24 3.8E-29 164.2 12.0 161 12-177 4-191 (403)
137 1mky_A Probable GTP-binding pr 99.9 2.3E-24 7.8E-29 164.2 12.6 151 17-178 2-166 (439)
138 4fid_A G protein alpha subunit 99.9 1.4E-24 4.9E-29 158.7 10.9 134 45-178 146-328 (340)
139 2hjg_A GTP-binding protein ENG 99.9 9E-25 3.1E-29 166.2 10.1 150 16-178 3-165 (436)
140 3geh_A MNME, tRNA modification 99.9 1.5E-24 5.2E-29 165.2 10.7 151 14-178 222-384 (462)
141 2ged_A SR-beta, signal recogni 99.9 1.2E-24 4E-29 148.6 8.9 125 13-142 45-181 (193)
142 2xtz_A Guanine nucleotide-bind 99.9 5.5E-25 1.9E-29 162.4 7.1 121 58-178 181-345 (354)
143 1mky_A Probable GTP-binding pr 99.9 1.1E-23 3.7E-28 160.5 12.9 159 15-178 179-355 (439)
144 1s0u_A EIF-2-gamma, translatio 99.9 1.4E-23 4.7E-28 158.5 13.1 160 13-177 5-197 (408)
145 1wb1_A Translation elongation 99.9 2.9E-24 9.9E-29 164.9 8.6 161 12-177 15-188 (482)
146 3izy_P Translation initiation 99.9 9.8E-25 3.4E-29 168.3 5.3 158 15-177 3-167 (537)
147 2xtp_A GTPase IMAP family memb 99.9 4.4E-23 1.5E-27 147.1 13.4 162 12-179 18-209 (260)
148 2elf_A Protein translation elo 99.9 2E-23 6.9E-28 155.3 11.8 146 18-177 23-179 (370)
149 1kk1_A EIF2gamma; initiation o 99.9 1.2E-23 4E-28 159.0 10.7 161 12-177 6-199 (410)
150 3tr5_A RF-3, peptide chain rel 99.9 6.3E-23 2.1E-27 158.7 14.8 114 14-132 11-149 (528)
151 3j2k_7 ERF3, eukaryotic polype 99.9 2.8E-23 9.6E-28 157.9 12.1 155 12-170 13-217 (439)
152 1ega_A Protein (GTP-binding pr 99.9 4.8E-23 1.6E-27 149.7 12.5 154 15-178 7-175 (301)
153 4dcu_A GTP-binding protein ENG 99.9 6.6E-24 2.3E-28 162.3 7.9 157 9-177 16-184 (456)
154 1jny_A EF-1-alpha, elongation 99.9 7.8E-24 2.7E-28 161.0 8.0 155 14-169 4-204 (435)
155 2qtf_A Protein HFLX, GTP-bindi 99.9 1.2E-22 4E-27 150.8 13.4 156 15-178 177-354 (364)
156 3p26_A Elongation factor 1 alp 99.9 1.3E-23 4.6E-28 161.6 8.5 153 13-167 30-227 (483)
157 1g7s_A Translation initiation 99.9 7E-23 2.4E-27 160.2 12.2 156 14-177 3-217 (594)
158 3cb4_D GTP-binding protein LEP 99.9 1.4E-22 4.8E-27 158.4 13.5 154 15-178 3-182 (599)
159 3t5d_A Septin-7; GTP-binding p 99.9 2.2E-23 7.5E-28 149.8 7.9 157 14-176 6-202 (274)
160 2ywe_A GTP-binding protein LEP 99.9 2.6E-22 8.9E-27 156.7 14.3 154 14-178 4-184 (600)
161 3izq_1 HBS1P, elongation facto 99.9 3.6E-23 1.2E-27 162.6 9.3 153 14-168 165-362 (611)
162 1zun_B Sulfate adenylate trans 99.9 3.7E-23 1.3E-27 157.2 8.9 151 14-168 22-214 (434)
163 3lxw_A GTPase IMAP family memb 99.9 2.6E-22 8.7E-27 142.1 12.4 165 13-179 18-209 (247)
164 1d2e_A Elongation factor TU (E 99.9 3.2E-23 1.1E-27 155.9 7.9 158 15-177 2-194 (397)
165 2c78_A Elongation factor TU-A; 99.9 3.1E-23 1.1E-27 156.4 7.8 160 13-177 8-211 (405)
166 3lxx_A GTPase IMAP family memb 99.9 4.4E-23 1.5E-27 145.4 8.0 167 10-178 23-214 (239)
167 1zo1_I IF2, translation initia 99.9 1.1E-23 3.8E-28 161.3 4.2 156 14-175 2-164 (501)
168 2aka_B Dynamin-1; fusion prote 99.9 8.6E-22 2.9E-26 143.0 13.9 157 14-175 24-250 (299)
169 1r5b_A Eukaryotic peptide chai 99.9 1.2E-23 4.1E-28 161.1 2.1 157 12-169 39-243 (467)
170 2h5e_A Peptide chain release f 99.9 1.7E-21 6E-26 150.8 14.1 114 14-132 11-149 (529)
171 1f60_A Elongation factor EEF1A 99.9 3.5E-22 1.2E-26 152.6 10.1 152 13-168 4-202 (458)
172 2qag_A Septin-2, protein NEDD5 99.9 4.8E-23 1.6E-27 153.0 3.8 159 12-178 33-233 (361)
173 3mca_A HBS1, elongation factor 99.9 3.9E-23 1.3E-27 161.9 0.8 162 12-176 173-395 (592)
174 1dar_A EF-G, elongation factor 99.9 1E-20 3.5E-25 150.8 14.3 115 13-132 9-144 (691)
175 3avx_A Elongation factor TS, e 99.8 2E-21 6.9E-26 159.0 8.9 160 13-177 293-485 (1289)
176 1pui_A ENGB, probable GTP-bind 99.8 1.3E-20 4.4E-25 130.1 10.3 156 12-178 22-199 (210)
177 3def_A T7I23.11 protein; chlor 99.8 2.1E-20 7.2E-25 133.4 11.1 117 14-131 34-165 (262)
178 1azs_C GS-alpha; complex (lyas 99.8 2.3E-21 8E-26 144.7 5.8 133 46-178 203-385 (402)
179 2j69_A Bacterial dynamin-like 99.8 3.3E-20 1.1E-24 147.9 12.3 162 12-178 65-325 (695)
180 2xex_A Elongation factor G; GT 99.8 3.6E-19 1.2E-23 141.9 17.1 115 13-132 7-142 (693)
181 1jwy_B Dynamin A GTPase domain 99.8 8.2E-20 2.8E-24 133.5 11.9 161 14-178 22-262 (315)
182 2rdo_7 EF-G, elongation factor 99.8 4E-19 1.4E-23 141.8 16.6 115 13-132 7-149 (704)
183 2dy1_A Elongation factor G; tr 99.8 2.2E-19 7.6E-24 142.6 15.0 112 14-130 7-139 (665)
184 1udx_A The GTP-binding protein 99.8 2.9E-19 1E-23 134.3 14.1 157 17-179 158-326 (416)
185 1h65_A Chloroplast outer envel 99.8 1.1E-18 3.9E-23 125.0 11.6 118 14-132 37-169 (270)
186 3t34_A Dynamin-related protein 99.8 4.5E-19 1.5E-23 131.9 9.0 149 15-171 33-254 (360)
187 2x2e_A Dynamin-1; nitration, h 99.8 6E-19 2E-23 130.9 8.4 155 14-174 29-254 (353)
188 2qnr_A Septin-2, protein NEDD5 99.8 9.2E-20 3.1E-24 132.4 3.9 160 11-178 13-214 (301)
189 1wxq_A GTP-binding protein; st 99.8 5E-19 1.7E-23 132.7 4.7 80 17-96 1-114 (397)
190 3p32_A Probable GTPase RV1496/ 99.7 9.4E-19 3.2E-23 129.9 5.6 153 14-178 77-284 (355)
191 2qpt_A EH domain-containing pr 99.7 6.2E-18 2.1E-22 131.6 8.6 121 14-138 63-239 (550)
192 3vqt_A RF-3, peptide chain rel 99.7 7.5E-17 2.6E-21 125.4 14.1 113 14-131 29-166 (548)
193 1u0l_A Probable GTPase ENGC; p 99.7 2.3E-18 7.9E-23 125.1 5.2 131 31-174 32-169 (301)
194 3l82_B F-box only protein 4; T 99.7 1.9E-17 6.6E-22 112.1 9.0 169 9-179 9-224 (227)
195 1n0u_A EF-2, elongation factor 99.7 1.5E-17 5.1E-22 135.1 9.7 113 13-130 16-163 (842)
196 2qag_C Septin-7; cell cycle, c 99.7 3.1E-18 1.1E-22 128.9 4.7 159 12-176 27-225 (418)
197 2www_A Methylmalonic aciduria 99.7 2.3E-17 8E-22 122.0 8.2 150 16-177 74-278 (349)
198 2wsm_A Hydrogenase expression/ 99.7 8.5E-18 2.9E-22 116.9 4.5 150 14-178 28-214 (221)
199 1jal_A YCHF protein; nucleotid 99.7 1.4E-15 4.9E-20 112.2 14.7 80 16-95 2-108 (363)
200 1yrb_A ATP(GTP)binding protein 99.7 5.7E-17 1.9E-21 115.5 6.4 118 60-178 109-257 (262)
201 2p67_A LAO/AO transport system 99.7 1.6E-16 5.5E-21 117.3 8.6 108 58-177 147-260 (341)
202 3l2o_B F-box only protein 4; s 99.6 4.6E-16 1.6E-20 110.2 8.3 111 67-179 194-309 (312)
203 3zvr_A Dynamin-1; hydrolase, D 99.6 2.2E-15 7.5E-20 120.2 12.9 156 14-174 49-274 (772)
204 3j25_A Tetracycline resistance 99.6 2.5E-16 8.6E-21 124.7 5.8 157 16-177 2-238 (638)
205 4a9a_A Ribosome-interacting GT 99.6 6.2E-15 2.1E-19 109.4 10.7 111 17-129 73-194 (376)
206 2dby_A GTP-binding protein; GD 99.6 1.9E-14 6.4E-19 106.8 12.6 79 17-95 2-111 (368)
207 4fn5_A EF-G 1, elongation fact 99.6 5.6E-14 1.9E-18 112.6 15.3 113 14-131 11-151 (709)
208 2hf9_A Probable hydrogenase ni 99.6 1.2E-16 4.2E-21 111.4 -1.9 151 14-179 36-225 (226)
209 2qm8_A GTPase/ATPase; G protei 99.6 3.3E-14 1.1E-18 104.7 10.8 152 14-177 53-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.4 3.4E-13 1.2E-17 100.5 8.0 83 14-96 20-129 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 2E-12 6.8E-17 93.8 6.0 96 70-174 66-165 (302)
212 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.4E-10 4.8E-15 86.6 9.8 82 14-95 18-127 (392)
213 2qag_B Septin-6, protein NEDD5 99.2 7.9E-11 2.7E-15 88.6 7.7 136 17-159 43-217 (427)
214 2j37_W Signal recognition part 99.2 1E-09 3.5E-14 84.5 13.6 154 14-175 99-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 99.1 1.9E-11 6.6E-16 91.0 2.3 112 15-132 161-289 (369)
216 3h2y_A GTPase family protein; 99.0 1.1E-10 3.9E-15 86.8 3.5 100 69-176 55-158 (368)
217 3h2y_A GTPase family protein; 99.0 8.5E-11 2.9E-15 87.5 2.8 114 15-134 159-290 (368)
218 3sop_A Neuronal-specific septi 99.0 2.4E-10 8.2E-15 81.6 4.6 113 16-134 2-157 (270)
219 3ec1_A YQEH GTPase; atnos1, at 99.0 3E-10 1E-14 84.6 3.3 101 69-177 57-161 (369)
220 1tq4_A IIGP1, interferon-induc 98.9 7.1E-09 2.4E-13 78.0 9.1 158 14-178 67-253 (413)
221 3cnl_A YLQF, putative uncharac 98.9 9.5E-10 3.3E-14 78.1 3.2 55 17-72 100-156 (262)
222 1puj_A YLQF, conserved hypothe 98.9 3.2E-09 1.1E-13 76.2 5.5 100 64-177 3-105 (282)
223 1puj_A YLQF, conserved hypothe 98.8 2.7E-09 9.2E-14 76.6 5.0 55 14-71 118-176 (282)
224 3dm5_A SRP54, signal recogniti 98.7 2.3E-08 7.9E-13 75.7 6.6 110 15-131 99-253 (443)
225 1f5n_A Interferon-induced guan 98.6 6.7E-08 2.3E-12 75.7 7.0 60 12-71 34-102 (592)
226 2v3c_C SRP54, signal recogniti 98.5 1.2E-07 4.3E-12 71.8 6.2 108 16-131 99-252 (432)
227 3szr_A Interferon-induced GTP- 98.5 7.3E-08 2.5E-12 76.2 4.3 23 18-40 47-69 (608)
228 1bif_A 6-phosphofructo-2-kinas 98.3 2.4E-08 8.2E-13 76.7 -1.9 96 11-107 34-143 (469)
229 3kl4_A SRP54, signal recogniti 98.3 4.7E-06 1.6E-10 63.1 9.8 110 15-131 96-252 (433)
230 1j8m_F SRP54, signal recogniti 98.3 8.9E-07 3E-11 64.0 5.6 66 58-131 179-253 (297)
231 3cnl_A YLQF, putative uncharac 98.1 5E-07 1.7E-11 64.1 1.2 93 67-174 4-97 (262)
232 2xxa_A Signal recognition part 98.1 1.9E-05 6.5E-10 59.9 8.9 109 16-132 100-255 (433)
233 1t9h_A YLOQ, probable GTPase E 98.1 1.1E-06 3.6E-11 63.7 1.8 88 75-171 78-170 (307)
234 3e70_C DPA, signal recognition 98.0 9.1E-06 3.1E-10 59.5 5.2 25 14-38 127-151 (328)
235 1np6_A Molybdopterin-guanine d 97.9 6.2E-05 2.1E-09 50.0 8.4 108 17-130 7-126 (174)
236 1ye8_A Protein THEP1, hypothet 97.9 5.2E-06 1.8E-10 55.5 3.0 23 17-39 1-23 (178)
237 3q5d_A Atlastin-1; G protein, 97.9 2.1E-05 7.1E-10 59.8 6.0 25 14-38 65-89 (447)
238 1kgd_A CASK, peripheral plasma 97.8 9.9E-06 3.4E-10 54.1 3.3 23 16-38 5-27 (180)
239 1lvg_A Guanylate kinase, GMP k 97.8 8.7E-06 3E-10 55.3 2.7 22 17-38 5-26 (198)
240 3ney_A 55 kDa erythrocyte memb 97.8 1.4E-05 5E-10 54.1 3.4 30 10-39 13-42 (197)
241 2rcn_A Probable GTPase ENGC; Y 97.8 6.1E-05 2.1E-09 55.6 6.8 83 80-172 127-213 (358)
242 3a00_A Guanylate kinase, GMP k 97.8 1.3E-05 4.4E-10 53.8 2.6 20 19-38 4-23 (186)
243 3tr0_A Guanylate kinase, GMP k 97.7 1.5E-05 5.1E-10 54.1 2.7 24 16-39 7-30 (205)
244 4dzz_A Plasmid partitioning pr 97.7 0.0004 1.4E-08 46.9 9.9 70 58-131 74-144 (206)
245 1s96_A Guanylate kinase, GMP k 97.7 1.6E-05 5.4E-10 54.9 2.7 24 16-39 16-39 (219)
246 3c8u_A Fructokinase; YP_612366 97.7 1.9E-05 6.5E-10 53.9 3.1 26 13-38 19-44 (208)
247 1znw_A Guanylate kinase, GMP k 97.7 1.6E-05 5.4E-10 54.3 2.7 25 15-39 19-43 (207)
248 3tau_A Guanylate kinase, GMP k 97.7 2.3E-05 8E-10 53.5 3.4 26 14-39 6-31 (208)
249 4gp7_A Metallophosphoesterase; 97.7 1.8E-05 6.1E-10 52.4 2.7 23 16-38 9-31 (171)
250 1zp6_A Hypothetical protein AT 97.7 2.5E-05 8.6E-10 52.4 3.3 24 16-39 9-32 (191)
251 3t61_A Gluconokinase; PSI-biol 97.7 2.5E-05 8.6E-10 53.0 3.3 27 12-38 14-40 (202)
252 1z6g_A Guanylate kinase; struc 97.7 1.9E-05 6.7E-10 54.3 2.7 24 15-38 22-45 (218)
253 1ex7_A Guanylate kinase; subst 97.7 2.3E-05 7.8E-10 52.6 2.8 21 19-39 4-24 (186)
254 2ffh_A Protein (FFH); SRP54, s 97.7 7.1E-05 2.4E-09 56.6 5.7 67 58-131 179-251 (425)
255 3tif_A Uncharacterized ABC tra 97.7 2.4E-05 8.4E-10 54.5 2.9 25 16-40 31-55 (235)
256 2bbw_A Adenylate kinase 4, AK4 97.6 3.2E-05 1.1E-09 54.1 3.4 26 12-37 23-48 (246)
257 1htw_A HI0065; nucleotide-bind 97.6 2.9E-05 9.9E-10 50.8 2.7 27 14-40 31-57 (158)
258 2pcj_A ABC transporter, lipopr 97.6 3.1E-05 1E-09 53.6 2.9 24 17-40 31-54 (224)
259 2rcn_A Probable GTPase ENGC; Y 97.6 3E-05 1E-09 57.3 2.9 26 16-41 215-240 (358)
260 2j41_A Guanylate kinase; GMP, 97.6 4.4E-05 1.5E-09 51.8 3.4 26 15-40 5-30 (207)
261 3asz_A Uridine kinase; cytidin 97.6 3.8E-05 1.3E-09 52.4 3.0 25 14-38 4-28 (211)
262 3gfo_A Cobalt import ATP-bindi 97.6 3.7E-05 1.3E-09 54.8 2.9 25 16-40 34-58 (275)
263 2cdn_A Adenylate kinase; phosp 97.6 5.3E-05 1.8E-09 51.3 3.5 30 9-38 13-42 (201)
264 2onk_A Molybdate/tungstate ABC 97.6 3.9E-05 1.3E-09 53.6 2.9 24 17-40 25-48 (240)
265 1sgw_A Putative ABC transporte 97.6 4.1E-05 1.4E-09 52.6 2.9 24 17-40 36-59 (214)
266 1b0u_A Histidine permease; ABC 97.6 4E-05 1.4E-09 54.3 2.9 25 16-40 32-56 (262)
267 4g1u_C Hemin import ATP-bindin 97.6 4.2E-05 1.4E-09 54.3 3.0 25 16-40 37-61 (266)
268 1kht_A Adenylate kinase; phosp 97.5 5.1E-05 1.8E-09 50.7 3.3 23 16-38 3-25 (192)
269 2qor_A Guanylate kinase; phosp 97.5 4.9E-05 1.7E-09 51.7 3.2 24 15-38 11-34 (204)
270 3lw7_A Adenylate kinase relate 97.5 5.1E-05 1.7E-09 49.9 3.2 20 17-36 2-21 (179)
271 2bdt_A BH3686; alpha-beta prot 97.5 4.2E-05 1.4E-09 51.3 2.7 21 18-38 4-24 (189)
272 1g6h_A High-affinity branched- 97.5 4.4E-05 1.5E-09 53.9 2.9 25 16-40 33-57 (257)
273 1kag_A SKI, shikimate kinase I 97.5 4.5E-05 1.6E-09 50.2 2.8 22 17-38 5-26 (173)
274 2cbz_A Multidrug resistance-as 97.5 4.8E-05 1.6E-09 53.1 2.9 25 16-40 31-55 (237)
275 1knq_A Gluconate kinase; ALFA/ 97.5 5.7E-05 2E-09 49.9 3.2 25 14-38 6-30 (175)
276 2i3b_A HCR-ntpase, human cance 97.5 4.4E-05 1.5E-09 51.4 2.6 22 18-39 3-24 (189)
277 2olj_A Amino acid ABC transpor 97.5 4.9E-05 1.7E-09 53.9 2.9 25 16-40 50-74 (263)
278 1ji0_A ABC transporter; ATP bi 97.5 5.1E-05 1.8E-09 53.0 2.9 25 16-40 32-56 (240)
279 2pze_A Cystic fibrosis transme 97.5 5.1E-05 1.8E-09 52.7 2.9 25 16-40 34-58 (229)
280 1mv5_A LMRA, multidrug resista 97.5 5.7E-05 1.9E-09 52.9 3.1 24 16-39 28-51 (243)
281 2ff7_A Alpha-hemolysin translo 97.5 5.7E-05 2E-09 53.0 3.2 25 16-40 35-59 (247)
282 4eun_A Thermoresistant glucoki 97.5 6.4E-05 2.2E-09 50.9 3.3 24 15-38 28-51 (200)
283 1vpl_A ABC transporter, ATP-bi 97.5 5.3E-05 1.8E-09 53.5 2.9 25 16-40 41-65 (256)
284 2qi9_C Vitamin B12 import ATP- 97.5 5.4E-05 1.8E-09 53.2 2.9 25 16-40 26-50 (249)
285 3lnc_A Guanylate kinase, GMP k 97.5 3.6E-05 1.2E-09 53.4 2.0 23 15-37 26-48 (231)
286 2d2e_A SUFC protein; ABC-ATPas 97.5 5.7E-05 2E-09 53.1 2.9 24 16-39 29-52 (250)
287 3kb2_A SPBC2 prophage-derived 97.5 6.4E-05 2.2E-09 49.4 3.0 21 18-38 3-23 (173)
288 1qhx_A CPT, protein (chloramph 97.5 7.9E-05 2.7E-09 49.3 3.4 22 17-38 4-25 (178)
289 1ly1_A Polynucleotide kinase; 97.5 6.8E-05 2.3E-09 49.6 3.1 22 17-38 3-24 (181)
290 1t9h_A YLOQ, probable GTPase E 97.5 1.8E-05 6.2E-10 57.3 0.2 25 16-40 173-197 (307)
291 3fb4_A Adenylate kinase; psych 97.5 6.8E-05 2.3E-09 51.3 3.1 21 17-37 1-21 (216)
292 3b85_A Phosphate starvation-in 97.5 4.5E-05 1.5E-09 52.2 2.2 24 16-39 22-45 (208)
293 2zu0_C Probable ATP-dependent 97.5 6.2E-05 2.1E-09 53.5 2.9 24 16-39 46-69 (267)
294 2ghi_A Transport protein; mult 97.5 7E-05 2.4E-09 53.0 3.2 24 16-39 46-69 (260)
295 2ihy_A ABC transporter, ATP-bi 97.5 7.1E-05 2.4E-09 53.5 3.1 25 16-40 47-71 (279)
296 3dl0_A Adenylate kinase; phosp 97.5 7.4E-05 2.5E-09 51.2 3.1 21 17-37 1-21 (216)
297 2ixe_A Antigen peptide transpo 97.5 6.6E-05 2.2E-09 53.5 2.9 25 16-40 45-69 (271)
298 1y63_A LMAJ004144AAA protein; 97.5 9.5E-05 3.2E-09 49.4 3.6 27 13-39 7-33 (184)
299 2nq2_C Hypothetical ABC transp 97.4 6.6E-05 2.2E-09 52.9 2.9 24 17-40 32-55 (253)
300 1u0l_A Probable GTPase ENGC; p 97.4 6.5E-05 2.2E-09 54.3 2.9 25 16-40 169-193 (301)
301 3end_A Light-independent proto 97.4 0.0039 1.3E-07 44.9 12.3 82 59-144 156-238 (307)
302 2yv5_A YJEQ protein; hydrolase 97.4 6.6E-05 2.2E-09 54.3 2.9 24 16-40 165-188 (302)
303 2bwj_A Adenylate kinase 5; pho 97.4 8.8E-05 3E-09 49.9 3.4 23 16-38 12-34 (199)
304 2yz2_A Putative ABC transporte 97.4 7E-05 2.4E-09 53.2 2.9 25 16-40 33-57 (266)
305 2eyu_A Twitching motility prot 97.4 6.6E-05 2.3E-09 53.2 2.8 25 14-38 23-47 (261)
306 3cm0_A Adenylate kinase; ATP-b 97.4 8E-05 2.8E-09 49.6 3.0 22 16-37 4-25 (186)
307 1uf9_A TT1252 protein; P-loop, 97.4 8.7E-05 3E-09 50.1 3.2 28 12-39 4-31 (203)
308 1tev_A UMP-CMP kinase; ploop, 97.4 8.4E-05 2.9E-09 49.8 3.1 24 15-38 2-25 (196)
309 3n70_A Transport activator; si 97.4 0.00068 2.3E-08 43.4 7.3 27 14-40 22-48 (145)
310 3trf_A Shikimate kinase, SK; a 97.4 9.5E-05 3.2E-09 49.3 3.2 22 16-37 5-26 (185)
311 1cke_A CK, MSSA, protein (cyti 97.4 8.5E-05 2.9E-09 51.2 3.1 23 16-38 5-27 (227)
312 2plr_A DTMP kinase, probable t 97.4 9.2E-05 3.2E-09 50.3 3.2 24 15-38 3-26 (213)
313 2v9p_A Replication protein E1; 97.4 7.5E-05 2.6E-09 54.0 2.9 25 14-38 124-148 (305)
314 3uie_A Adenylyl-sulfate kinase 97.4 9.6E-05 3.3E-09 50.0 3.3 25 14-38 23-47 (200)
315 3sr0_A Adenylate kinase; phosp 97.4 9.4E-05 3.2E-09 50.5 3.2 22 17-38 1-22 (206)
316 2if2_A Dephospho-COA kinase; a 97.4 8.3E-05 2.8E-09 50.4 2.9 22 17-38 2-23 (204)
317 3aez_A Pantothenate kinase; tr 97.4 8.8E-05 3E-09 53.9 3.2 26 13-38 87-112 (312)
318 3ec2_A DNA replication protein 97.4 0.00011 3.7E-09 48.9 3.3 26 14-39 36-61 (180)
319 2rhm_A Putative kinase; P-loop 97.4 0.0001 3.5E-09 49.4 3.2 23 16-38 5-27 (193)
320 2ehv_A Hypothetical protein PH 97.4 8.5E-05 2.9E-09 51.8 2.8 23 15-37 29-51 (251)
321 3tlx_A Adenylate kinase 2; str 97.4 0.00016 5.4E-09 50.6 4.2 25 14-38 27-51 (243)
322 2pjz_A Hypothetical protein ST 97.4 9.9E-05 3.4E-09 52.3 3.1 25 16-40 30-54 (263)
323 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4.1E-09 49.5 3.4 23 16-38 25-47 (199)
324 2jaq_A Deoxyguanosine kinase; 97.4 0.00011 3.7E-09 49.6 3.2 21 18-38 2-22 (205)
325 3umf_A Adenylate kinase; rossm 97.4 0.00012 4.1E-09 50.4 3.4 25 14-38 26-51 (217)
326 2jeo_A Uridine-cytidine kinase 97.4 0.00011 3.7E-09 51.5 3.1 25 14-38 23-47 (245)
327 4e22_A Cytidylate kinase; P-lo 97.4 0.00013 4.4E-09 51.4 3.5 24 14-37 25-48 (252)
328 2vli_A Antibiotic resistance p 97.4 7.7E-05 2.6E-09 49.6 2.3 25 14-38 3-27 (183)
329 2vp4_A Deoxynucleoside kinase; 97.4 8E-05 2.7E-09 51.7 2.4 28 12-39 16-43 (230)
330 1jjv_A Dephospho-COA kinase; P 97.4 0.00011 3.8E-09 49.9 3.1 22 17-38 3-24 (206)
331 1nks_A Adenylate kinase; therm 97.4 0.00011 3.8E-09 49.1 3.0 21 18-38 3-23 (194)
332 1rz3_A Hypothetical protein rb 97.4 0.00011 3.9E-09 49.8 3.0 26 13-38 19-44 (201)
333 3cwq_A Para family chromosome 97.3 0.0042 1.4E-07 42.2 10.9 68 58-131 66-134 (209)
334 4a74_A DNA repair and recombin 97.3 9.2E-05 3.2E-09 51.0 2.6 24 15-38 24-47 (231)
335 1aky_A Adenylate kinase; ATP:A 97.3 0.00013 4.5E-09 50.1 3.4 24 15-38 3-26 (220)
336 2v54_A DTMP kinase, thymidylat 97.3 0.00014 4.9E-09 49.1 3.4 25 15-39 3-27 (204)
337 1e4v_A Adenylate kinase; trans 97.3 0.00012 4.2E-09 50.0 3.1 22 17-38 1-22 (214)
338 2bbs_A Cystic fibrosis transme 97.3 0.00012 4.2E-09 52.6 3.1 25 16-40 64-88 (290)
339 3iij_A Coilin-interacting nucl 97.3 0.00014 4.7E-09 48.3 3.1 24 14-37 9-32 (180)
340 1uj2_A Uridine-cytidine kinase 97.3 0.00013 4.6E-09 51.2 3.2 27 12-38 18-44 (252)
341 1gvn_B Zeta; postsegregational 97.3 0.00014 4.7E-09 52.3 3.3 25 14-38 31-55 (287)
342 2qt1_A Nicotinamide riboside k 97.3 0.00015 5.2E-09 49.2 3.3 25 15-39 20-44 (207)
343 3be4_A Adenylate kinase; malar 97.3 0.00015 5.2E-09 49.7 3.3 24 15-38 4-27 (217)
344 1ak2_A Adenylate kinase isoenz 97.3 0.00016 5.6E-09 50.1 3.5 29 10-38 10-38 (233)
345 3tui_C Methionine import ATP-b 97.3 0.00012 4.2E-09 54.2 2.9 24 17-40 55-78 (366)
346 3nh6_A ATP-binding cassette SU 97.3 7.7E-05 2.6E-09 54.0 1.8 24 15-38 79-102 (306)
347 1odf_A YGR205W, hypothetical 3 97.3 0.00022 7.4E-09 51.3 4.1 26 13-38 28-53 (290)
348 1lw7_A Transcriptional regulat 97.3 9.1E-05 3.1E-09 55.0 2.2 25 16-40 170-194 (365)
349 3tqc_A Pantothenate kinase; bi 97.3 0.00014 4.9E-09 52.9 3.2 25 13-37 89-113 (321)
350 1zd8_A GTP:AMP phosphotransfer 97.3 0.00015 5.2E-09 50.0 3.2 23 15-37 6-28 (227)
351 2c95_A Adenylate kinase 1; tra 97.3 0.00017 6E-09 48.3 3.4 24 15-38 8-31 (196)
352 2yvu_A Probable adenylyl-sulfa 97.3 0.00017 5.9E-09 48.1 3.3 26 13-38 10-35 (186)
353 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00013 4.5E-09 53.9 2.8 24 17-40 31-54 (359)
354 2wwf_A Thymidilate kinase, put 97.3 0.00018 6.1E-09 48.9 3.4 24 15-38 9-32 (212)
355 1nn5_A Similar to deoxythymidy 97.3 0.00018 6.2E-09 49.0 3.4 24 15-38 8-31 (215)
356 1rj9_A FTSY, signal recognitio 97.3 0.00013 4.5E-09 52.8 2.7 24 15-38 101-124 (304)
357 1zak_A Adenylate kinase; ATP:A 97.3 0.00016 5.5E-09 49.7 3.1 23 16-38 5-27 (222)
358 2pt5_A Shikimate kinase, SK; a 97.3 0.00019 6.5E-09 46.9 3.2 22 17-38 1-22 (168)
359 2f1r_A Molybdopterin-guanine d 97.2 6.3E-05 2.2E-09 49.8 0.8 21 18-38 4-24 (171)
360 2x8a_A Nuclear valosin-contain 97.2 0.00015 5E-09 51.7 2.8 22 18-39 46-67 (274)
361 3b9q_A Chloroplast SRP recepto 97.2 0.00014 4.9E-09 52.5 2.7 23 16-38 100-122 (302)
362 1via_A Shikimate kinase; struc 97.2 0.00016 5.5E-09 47.8 2.8 21 18-38 6-26 (175)
363 2kjq_A DNAA-related protein; s 97.2 0.00012 4.1E-09 47.3 2.0 25 15-39 35-59 (149)
364 1sq5_A Pantothenate kinase; P- 97.2 0.00017 5.9E-09 52.3 3.1 25 14-38 78-102 (308)
365 1z47_A CYSA, putative ABC-tran 97.2 0.00016 5.6E-09 53.4 2.9 24 17-40 42-65 (355)
366 3r20_A Cytidylate kinase; stru 97.2 0.0002 6.9E-09 49.8 3.2 25 13-37 6-30 (233)
367 3jvv_A Twitching mobility prot 97.2 0.00023 8E-09 52.6 3.7 25 14-38 121-145 (356)
368 2xb4_A Adenylate kinase; ATP-b 97.2 0.0002 7E-09 49.3 3.2 22 17-38 1-22 (223)
369 1ukz_A Uridylate kinase; trans 97.2 0.00022 7.7E-09 48.2 3.3 26 13-38 12-37 (203)
370 2yyz_A Sugar ABC transporter, 97.2 0.00018 6E-09 53.3 2.9 23 17-39 30-52 (359)
371 1jbk_A CLPB protein; beta barr 97.2 0.00043 1.5E-08 45.8 4.6 26 14-39 41-66 (195)
372 2oap_1 GSPE-2, type II secreti 97.2 0.00028 9.5E-09 54.7 4.1 26 15-40 259-284 (511)
373 3rlf_A Maltose/maltodextrin im 97.2 0.00018 6.1E-09 53.6 2.9 24 17-40 30-53 (381)
374 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00018 6.1E-09 52.7 2.9 26 15-40 170-195 (330)
375 2gza_A Type IV secretion syste 97.2 0.00017 5.7E-09 53.5 2.7 27 14-40 173-199 (361)
376 2it1_A 362AA long hypothetical 97.2 0.00018 6.3E-09 53.2 2.9 24 17-40 30-53 (362)
377 3bos_A Putative DNA replicatio 97.2 0.00033 1.1E-08 48.4 4.0 24 15-38 51-74 (242)
378 1g29_1 MALK, maltose transport 97.2 0.0002 6.9E-09 53.3 2.9 23 18-40 31-53 (372)
379 1ixz_A ATP-dependent metallopr 97.2 0.00019 6.6E-09 50.3 2.7 22 18-39 51-72 (254)
380 1v43_A Sugar-binding transport 97.2 0.00021 7.2E-09 53.1 2.9 24 16-39 37-60 (372)
381 2ze6_A Isopentenyl transferase 97.1 0.00023 7.9E-09 50.1 2.8 21 18-38 3-23 (253)
382 3kta_A Chromosome segregation 97.1 0.00024 8E-09 47.2 2.8 21 18-38 28-48 (182)
383 2pbr_A DTMP kinase, thymidylat 97.1 0.00029 9.9E-09 47.1 3.2 21 18-38 2-22 (195)
384 2p5t_B PEZT; postsegregational 97.1 0.00019 6.4E-09 50.5 2.3 25 14-38 30-54 (253)
385 2z0h_A DTMP kinase, thymidylat 97.1 0.00029 9.9E-09 47.3 3.1 21 18-38 2-22 (197)
386 2pez_A Bifunctional 3'-phospho 97.1 0.0003 1E-08 46.6 3.2 24 15-38 4-27 (179)
387 2ewv_A Twitching motility prot 97.1 0.00033 1.1E-08 52.1 3.6 25 14-38 134-158 (372)
388 1vht_A Dephospho-COA kinase; s 97.1 0.00032 1.1E-08 48.0 3.3 23 16-38 4-26 (218)
389 2og2_A Putative signal recogni 97.1 0.00025 8.4E-09 52.5 2.7 23 16-38 157-179 (359)
390 1xjc_A MOBB protein homolog; s 97.1 0.00037 1.3E-08 46.0 3.3 22 17-38 5-26 (169)
391 1p9r_A General secretion pathw 97.1 0.00047 1.6E-08 52.1 4.1 30 9-38 160-189 (418)
392 3d31_A Sulfate/molybdate ABC t 97.1 0.00016 5.6E-09 53.2 1.6 24 17-40 27-50 (348)
393 3gd7_A Fusion complex of cysti 97.1 0.00028 9.7E-09 52.8 2.8 23 16-38 47-69 (390)
394 2chg_A Replication factor C sm 97.1 0.00049 1.7E-08 46.7 3.9 21 18-38 40-60 (226)
395 1qf9_A UMP/CMP kinase, protein 97.1 0.00038 1.3E-08 46.4 3.2 22 17-38 7-28 (194)
396 2iyv_A Shikimate kinase, SK; t 97.1 0.00032 1.1E-08 46.7 2.8 21 18-38 4-24 (184)
397 1in4_A RUVB, holliday junction 97.1 0.00028 9.5E-09 51.7 2.7 23 17-39 52-74 (334)
398 1gtv_A TMK, thymidylate kinase 97.1 0.00011 3.7E-09 50.1 0.5 21 18-38 2-22 (214)
399 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0003 1E-08 48.4 2.7 24 15-38 22-45 (235)
400 2f6r_A COA synthase, bifunctio 97.1 0.00037 1.3E-08 49.8 3.3 25 13-37 72-96 (281)
401 1e6c_A Shikimate kinase; phosp 97.0 0.00033 1.1E-08 46.0 2.8 21 18-38 4-24 (173)
402 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00036 1.2E-08 45.1 2.8 19 19-37 26-44 (149)
403 1iy2_A ATP-dependent metallopr 97.0 0.00029 1E-08 50.1 2.7 22 18-39 75-96 (278)
404 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00038 1.3E-08 49.2 3.2 22 17-38 5-26 (260)
405 1nij_A Hypothetical protein YJ 97.0 0.00025 8.5E-09 51.7 2.2 22 18-39 6-27 (318)
406 2p65_A Hypothetical protein PF 97.0 0.00054 1.8E-08 45.2 3.7 25 14-38 41-65 (187)
407 1tue_A Replication protein E1; 97.0 0.00043 1.5E-08 47.0 3.1 22 17-38 59-80 (212)
408 2grj_A Dephospho-COA kinase; T 97.0 0.00041 1.4E-08 46.8 3.0 25 14-38 10-34 (192)
409 1zuh_A Shikimate kinase; alpha 97.0 0.00043 1.5E-08 45.3 3.0 22 17-38 8-29 (168)
410 2yhs_A FTSY, cell division pro 97.0 0.00032 1.1E-08 53.9 2.7 24 15-38 292-315 (503)
411 2obl_A ESCN; ATPase, hydrolase 97.0 0.00035 1.2E-08 51.5 2.8 27 14-40 69-95 (347)
412 1oxx_K GLCV, glucose, ABC tran 97.0 0.00016 5.5E-09 53.4 0.9 24 17-40 32-55 (353)
413 1p5z_B DCK, deoxycytidine kina 97.0 0.00037 1.3E-08 49.2 2.7 28 12-39 20-47 (263)
414 4eaq_A DTMP kinase, thymidylat 97.0 0.00054 1.8E-08 47.5 3.4 25 14-38 24-48 (229)
415 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00033 1.1E-08 53.6 2.5 27 14-40 136-162 (460)
416 2w58_A DNAI, primosome compone 97.0 0.00069 2.4E-08 45.7 3.7 22 17-38 55-76 (202)
417 3ozx_A RNAse L inhibitor; ATP 96.9 0.00043 1.5E-08 54.0 2.9 25 15-39 24-48 (538)
418 3nwj_A ATSK2; P loop, shikimat 96.9 0.00043 1.5E-08 48.7 2.6 23 16-38 48-70 (250)
419 1sxj_C Activator 1 40 kDa subu 96.9 0.00064 2.2E-08 49.9 3.6 34 6-39 35-69 (340)
420 1cr0_A DNA primase/helicase; R 96.9 0.00043 1.5E-08 49.7 2.6 24 15-38 34-57 (296)
421 1lv7_A FTSH; alpha/beta domain 96.9 0.0006 2.1E-08 47.9 3.3 23 16-38 45-67 (257)
422 1yqt_A RNAse L inhibitor; ATP- 96.9 0.0005 1.7E-08 53.7 3.1 26 15-40 46-71 (538)
423 1m7g_A Adenylylsulfate kinase; 96.9 0.00063 2.2E-08 46.4 3.3 25 14-38 23-47 (211)
424 2cvh_A DNA repair and recombin 96.9 0.00051 1.7E-08 46.9 2.7 24 15-38 19-42 (220)
425 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00052 1.8E-08 51.0 2.8 19 19-37 26-44 (365)
426 1njg_A DNA polymerase III subu 96.9 0.00092 3.2E-08 45.9 4.0 21 18-38 47-67 (250)
427 3gmt_A Adenylate kinase; ssgci 96.9 0.00069 2.4E-08 46.9 3.2 25 14-38 6-30 (230)
428 1n0w_A DNA repair protein RAD5 96.9 0.00053 1.8E-08 47.5 2.7 25 14-38 22-46 (243)
429 1q3t_A Cytidylate kinase; nucl 96.9 0.00078 2.7E-08 46.7 3.5 25 14-38 14-38 (236)
430 3b60_A Lipid A export ATP-bind 96.9 0.00057 2E-08 53.9 3.0 25 15-39 368-392 (582)
431 3euj_A Chromosome partition pr 96.9 0.00052 1.8E-08 52.7 2.7 22 17-38 30-51 (483)
432 3j16_B RLI1P; ribosome recycli 96.8 0.00057 2E-08 54.1 2.9 25 15-39 102-126 (608)
433 2dpy_A FLII, flagellum-specifi 96.8 0.00061 2.1E-08 51.8 2.8 27 14-40 155-181 (438)
434 1sxj_E Activator 1 40 kDa subu 96.8 0.00095 3.3E-08 49.0 3.8 21 18-38 38-58 (354)
435 1ltq_A Polynucleotide kinase; 96.8 0.00073 2.5E-08 48.6 3.1 22 17-38 3-24 (301)
436 3b5x_A Lipid A export ATP-bind 96.8 0.00067 2.3E-08 53.5 3.1 25 15-39 368-392 (582)
437 1a7j_A Phosphoribulokinase; tr 96.8 0.00043 1.5E-08 49.7 1.8 25 14-38 3-27 (290)
438 2px0_A Flagellar biosynthesis 96.8 0.00085 2.9E-08 48.3 3.3 110 15-131 104-253 (296)
439 3bk7_A ABC transporter ATP-bin 96.8 0.00076 2.6E-08 53.4 3.1 26 15-40 116-141 (607)
440 4a82_A Cystic fibrosis transme 96.8 0.00058 2E-08 53.8 2.5 25 15-39 366-390 (578)
441 2yl4_A ATP-binding cassette SU 96.8 0.0006 2.1E-08 53.9 2.5 25 15-39 369-393 (595)
442 1d2n_A N-ethylmaleimide-sensit 96.7 0.0013 4.6E-08 46.5 4.0 26 13-38 61-86 (272)
443 1svm_A Large T antigen; AAA+ f 96.7 0.00095 3.3E-08 49.7 3.3 24 15-38 168-191 (377)
444 3b9p_A CG5977-PA, isoform A; A 96.7 0.0011 3.7E-08 47.6 3.5 24 15-38 53-76 (297)
445 3ake_A Cytidylate kinase; CMP 96.7 0.0011 3.7E-08 44.8 3.4 21 18-38 4-24 (208)
446 3ozx_A RNAse L inhibitor; ATP 96.7 0.00078 2.7E-08 52.6 2.9 24 17-40 295-318 (538)
447 3qf4_B Uncharacterized ABC tra 96.7 0.00069 2.4E-08 53.6 2.7 25 15-39 380-404 (598)
448 3h4m_A Proteasome-activating n 96.7 0.0015 5E-08 46.5 4.1 26 14-39 49-74 (285)
449 2h92_A Cytidylate kinase; ross 96.7 0.0009 3.1E-08 45.7 2.9 24 15-38 2-25 (219)
450 3co5_A Putative two-component 96.7 0.00083 2.9E-08 42.9 2.5 26 14-39 25-50 (143)
451 2qmh_A HPR kinase/phosphorylas 96.7 0.001 3.5E-08 44.9 2.9 27 14-40 32-58 (205)
452 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00093 3.2E-08 52.2 3.1 25 16-40 312-336 (538)
453 1nlf_A Regulatory protein REPA 96.7 0.00082 2.8E-08 47.9 2.6 24 15-38 29-52 (279)
454 3qf4_A ABC transporter, ATP-bi 96.7 0.0008 2.7E-08 53.1 2.7 24 15-38 368-391 (587)
455 3syl_A Protein CBBX; photosynt 96.7 0.0011 3.8E-08 47.7 3.3 24 14-37 65-88 (309)
456 2qz4_A Paraplegin; AAA+, SPG7, 96.7 0.0012 4E-08 46.3 3.3 24 15-38 38-61 (262)
457 3t15_A Ribulose bisphosphate c 96.7 0.0011 3.9E-08 47.6 3.3 23 16-38 36-58 (293)
458 3bk7_A ABC transporter ATP-bin 96.7 0.00091 3.1E-08 53.0 2.9 25 16-40 382-406 (607)
459 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0019 6.6E-08 47.6 4.3 24 15-38 23-46 (359)
460 3qks_A DNA double-strand break 96.7 0.0011 3.7E-08 45.1 2.8 20 18-37 25-44 (203)
461 1sxj_D Activator 1 41 kDa subu 96.6 0.0018 6E-08 47.5 4.1 35 5-39 46-81 (353)
462 3cf0_A Transitional endoplasmi 96.6 0.0013 4.5E-08 47.4 3.3 26 14-39 47-72 (301)
463 3exa_A TRNA delta(2)-isopenten 96.6 0.0014 4.7E-08 47.5 3.2 24 16-39 3-26 (322)
464 1vma_A Cell division protein F 96.6 0.0011 3.7E-08 48.0 2.7 23 16-38 104-126 (306)
465 3j16_B RLI1P; ribosome recycli 96.6 0.0011 3.9E-08 52.4 2.9 22 19-40 381-402 (608)
466 2v1u_A Cell division control p 96.6 0.0015 5.2E-08 48.3 3.4 25 14-38 42-66 (387)
467 3v9p_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 45.5 2.7 25 14-38 23-47 (227)
468 1l8q_A Chromosomal replication 96.5 0.0012 4.1E-08 48.0 2.6 23 16-38 37-59 (324)
469 2dr3_A UPF0273 protein PH0284; 96.5 0.0013 4.5E-08 45.6 2.8 22 16-37 23-44 (247)
470 1pzn_A RAD51, DNA repair and r 96.5 0.0012 4.3E-08 48.6 2.6 25 15-39 130-154 (349)
471 3zvl_A Bifunctional polynucleo 96.5 0.0018 6.3E-08 48.9 3.6 24 15-38 257-280 (416)
472 4b4t_K 26S protease regulatory 96.5 0.0013 4.5E-08 49.7 2.7 24 15-38 205-228 (428)
473 3crm_A TRNA delta(2)-isopenten 96.5 0.0018 6.2E-08 47.1 3.3 22 17-38 6-27 (323)
474 2qby_A CDC6 homolog 1, cell di 96.5 0.0013 4.3E-08 48.7 2.6 23 16-38 45-67 (386)
475 1ofh_A ATP-dependent HSL prote 96.5 0.0016 5.4E-08 46.8 2.9 24 15-38 49-72 (310)
476 1fnn_A CDC6P, cell division co 96.5 0.0015 5.3E-08 48.4 2.9 22 18-39 46-67 (389)
477 3pxg_A Negative regulator of g 96.5 0.0019 6.4E-08 49.6 3.4 25 14-38 199-223 (468)
478 3d3q_A TRNA delta(2)-isopenten 96.5 0.0016 5.5E-08 47.7 2.9 22 17-38 8-29 (340)
479 4b4t_M 26S protease regulatory 96.5 0.0027 9.3E-08 48.1 4.1 25 14-38 213-237 (434)
480 2ocp_A DGK, deoxyguanosine kin 96.4 0.0019 6.5E-08 44.9 3.1 23 16-38 2-24 (241)
481 3cr8_A Sulfate adenylyltranfer 96.4 0.00095 3.3E-08 52.2 1.7 26 14-39 367-392 (552)
482 4edh_A DTMP kinase, thymidylat 96.4 0.0021 7E-08 44.0 3.2 24 14-37 4-27 (213)
483 3ld9_A DTMP kinase, thymidylat 96.4 0.0022 7.4E-08 44.3 3.3 25 14-38 19-43 (223)
484 3lv8_A DTMP kinase, thymidylat 96.4 0.0022 7.5E-08 44.6 3.3 25 14-38 25-49 (236)
485 2iw3_A Elongation factor 3A; a 96.4 0.0018 6.1E-08 53.9 3.2 25 16-40 461-485 (986)
486 4b4t_L 26S protease subunit RP 96.4 0.0016 5.4E-08 49.5 2.7 25 14-38 213-237 (437)
487 1iqp_A RFCS; clamp loader, ext 96.4 0.0027 9.2E-08 45.9 3.9 22 18-39 48-69 (327)
488 3a8t_A Adenylate isopentenyltr 96.4 0.0024 8.3E-08 46.7 3.5 23 17-39 41-63 (339)
489 3eie_A Vacuolar protein sortin 96.4 0.0022 7.6E-08 46.6 3.3 23 16-38 51-73 (322)
490 4fcw_A Chaperone protein CLPB; 96.4 0.0021 7.2E-08 46.2 3.2 22 17-38 48-69 (311)
491 3qkt_A DNA double-strand break 96.4 0.0019 6.4E-08 47.5 2.8 18 20-37 27-44 (339)
492 3uk6_A RUVB-like 2; hexameric 96.4 0.0033 1.1E-07 46.4 4.1 22 17-38 71-92 (368)
493 3pvs_A Replication-associated 96.4 0.0023 7.9E-08 48.8 3.3 23 17-39 51-73 (447)
494 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0024 8.3E-08 46.5 3.3 23 16-38 45-67 (322)
495 1e69_A Chromosome segregation 96.3 0.0016 5.6E-08 47.4 2.3 20 18-37 26-45 (322)
496 3ux8_A Excinuclease ABC, A sub 96.3 0.0015 5E-08 52.5 2.2 20 17-36 349-368 (670)
497 4b4t_J 26S protease regulatory 96.3 0.0019 6.5E-08 48.4 2.6 25 14-38 180-204 (405)
498 3tqf_A HPR(Ser) kinase; transf 96.3 0.0023 7.9E-08 42.2 2.7 25 15-39 15-39 (181)
499 2bjv_A PSP operon transcriptio 96.3 0.0025 8.6E-08 44.9 3.2 27 14-40 27-53 (265)
500 2qen_A Walker-type ATPase; unk 96.3 0.0031 1E-07 46.0 3.7 33 6-39 22-54 (350)
No 1
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-39 Score=218.69 Aligned_cols=179 Identities=47% Similarity=0.877 Sum_probs=154.0
Q ss_pred CcchHHHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh
Q 030289 1 MGMVISRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY 80 (180)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 80 (180)
||.+++++-+.+.++.+||+++|++|||||||+++|+++....+.+|.+.....+..++..+.+|||||++++...+..+
T Consensus 1 m~~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 80 (187)
T 1zj6_A 1 MGILFTRIWRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 80 (187)
T ss_dssp -CHHHHHHHHHHTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHH
T ss_pred CchHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence 89889888558889999999999999999999999998886677889998888888899999999999999999999999
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.+....+...++++++|||+
T Consensus 81 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 160 (187)
T ss_dssp HTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCC
Confidence 99999999999999999999999999998776445689999999999998876677777766655455667899999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
+|.|++++++++.+.+...
T Consensus 161 ~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTBTHHHHHHHHHHHHCC-
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 2
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4e-39 Score=218.71 Aligned_cols=179 Identities=56% Similarity=0.980 Sum_probs=155.1
Q ss_pred CcchHHHH-hhhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHH
Q 030289 1 MGMVISRL-KMLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWR 78 (180)
Q Consensus 1 ~~~~~~~~-~~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 78 (180)
||.+++++ +..+. ++.+||+++|++|||||||+++++++....+.+|.+.....+..++..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 89888877 66666 79999999999999999999999988877778899988888888899999999999999999999
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.++.......+++++++|
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 160 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 160 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence 99999999999999999999999999999887654457899999999999988777777777777666666778999999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030289 159 ATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~ 179 (180)
|++|.|++++++++.+.+.++
T Consensus 161 a~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 161 AIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp GGGTBTHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999998765
No 3
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=4.5e-39 Score=219.72 Aligned_cols=179 Identities=52% Similarity=0.986 Sum_probs=155.9
Q ss_pred CcchHHHH-h--hhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhh
Q 030289 1 MGMVISRL-K--MLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPL 76 (180)
Q Consensus 1 ~~~~~~~~-~--~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 76 (180)
||.+++++ + +.+. ++.+||+++|++|||||||+++|+.+.+..+.||.+.....+..++..+.+|||||++.+...
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 82 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPY 82 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCC
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHH
Confidence 67666654 2 4566 789999999999999999999999888777888999888888889999999999999999999
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
+..+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++...++.......++++++
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVK 162 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEE
Confidence 99999999999999999999999999999998877655568999999999999887777777777776666677889999
Q ss_pred eeccCCCChHHHHHHHHHHhhhc
Q 030289 157 ACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
|||+++.|++++++++.+.+.++
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 163 SSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHT
T ss_pred ccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999998765
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.8e-38 Score=216.20 Aligned_cols=178 Identities=46% Similarity=0.864 Sum_probs=148.2
Q ss_pred CcchHHHHhhhcc-cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHh
Q 030289 1 MGMVISRLKMLFA-RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRH 79 (180)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 79 (180)
|| .++.+++.+. ++.+||+++|++|||||||+++++++....+.||.+.....+..++..+.+|||||++++...+..
T Consensus 3 mg-~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 81 (186)
T 1ksh_A 3 MG-LLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRN 81 (186)
T ss_dssp ---------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGG
T ss_pred cc-hhHHHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 66 4554566666 789999999999999999999999888667788999888888889999999999999999989999
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+++++|++++|+|++++++++....|+..+.......+.|+++|+||+|+.++...+++.+.+........+++++++||
T Consensus 82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1ksh_A 82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSA 161 (186)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeC
Confidence 99999999999999999999999999998877655578999999999999887777777777665555567789999999
Q ss_pred cCCCChHHHHHHHHHHhhhc
Q 030289 160 TSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~~ 179 (180)
++|.|++++++++.+.+.++
T Consensus 162 ~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 162 VTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=4.1e-38 Score=215.62 Aligned_cols=171 Identities=80% Similarity=1.303 Sum_probs=149.8
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
++.+.++.+||+++|++|||||||+++|+.+.+..+.||++.....+...+..+.+|||||++.+...+..+++++|+++
T Consensus 22 ~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 22 SRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp GGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred HHhccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 66778899999999999999999999999888777788999888888889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++...++.......++++++|||++|.|++++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 181 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDG 181 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHH
Confidence 99999999999999999999877655568999999999999887777788888777666677889999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|+++.+.+.++
T Consensus 182 ~~~l~~~i~~q 192 (192)
T 2b6h_A 182 LDWLSHELSKR 192 (192)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHhcC
Confidence 99999988764
No 6
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=2.1e-37 Score=207.90 Aligned_cols=167 Identities=58% Similarity=1.017 Sum_probs=151.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
.+.+||+++|++|||||||+++|.++.+..+.||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56899999999999999999999988877788999988888888999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
++++++.....|+..+.......+.|+++|+||+|+.+....+++...++...+...+++++++||++|.|++++++++.
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 99999999999999887765557899999999999988777777777777666667788999999999999999999999
Q ss_pred HHhhhcC
Q 030289 174 SNVSAKG 180 (180)
Q Consensus 174 ~~~~~~~ 180 (180)
+.+.++|
T Consensus 165 ~~i~~~q 171 (171)
T 1upt_A 165 ETLKSRQ 171 (171)
T ss_dssp HHHHTCC
T ss_pred HHHhhcC
Confidence 9998775
No 7
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=1.3e-37 Score=211.29 Aligned_cols=166 Identities=48% Similarity=0.861 Sum_probs=146.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEEC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDS 93 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (180)
.+.+||+++|++|||||||+++|.+.....+.||.+.....+...+..+.+|||||++.++..+..+++++|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 68899999999999999999999988877778899988888888999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 94 NDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
+++++++....|+..++......+.|+++|+||+|+.+....+++.+.++.......++++++|||++|.|++++|+++.
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999999999998887654456899999999999988777777777766655556678999999999999999999999
Q ss_pred HHhhhc
Q 030289 174 SNVSAK 179 (180)
Q Consensus 174 ~~~~~~ 179 (180)
+.+.++
T Consensus 174 ~~~~~~ 179 (181)
T 1fzq_A 174 KNVNAK 179 (181)
T ss_dssp HTC---
T ss_pred HHHHhc
Confidence 987654
No 8
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.5e-39 Score=222.17 Aligned_cols=161 Identities=15% Similarity=0.334 Sum_probs=123.1
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.|.++|||+|+|++|||||||+++|..+. ...+.||++..+.. +.. ..+.+.+|||+|+++|..+++.+++++++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 46789999999999999999999999888 55667898866543 333 45788999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|||++++++++.+..|+..+.... .+++|+++|+||+|+.+.+. .++.. ..+...+++|++|||++|.|
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~-----~~a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGE-----RKAKELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHH-----HHHHHHTCEEEEEBTTTTBS
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHh-----hHHHHhCCeeEEEeCCCCcC
Confidence 999999999999999999999886543 36799999999999976433 33222 22334567899999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030289 165 LYEGLDWLSSNVSA 178 (180)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (180)
|+++|+.|++.+.+
T Consensus 163 V~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 163 VKQLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998754
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=1.9e-37 Score=206.92 Aligned_cols=163 Identities=86% Similarity=1.366 Sum_probs=144.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCCh
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 96 (180)
+||+++|++|||||||+++|+++.+..+.||.+.....+...+..+.+|||||++.+...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988877778899988888888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 97 ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
++++....|+..+.......+.|+++|+||+|+.+....+++...++.......++++++|||++|.|++++|+++.+.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 99999999999887765557899999999999988766777777777666666788999999999999999999999988
Q ss_pred hhc
Q 030289 177 SAK 179 (180)
Q Consensus 177 ~~~ 179 (180)
.++
T Consensus 161 ~~~ 163 (164)
T 1r8s_A 161 RNQ 163 (164)
T ss_dssp ---
T ss_pred hhc
Confidence 764
No 10
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=1.1e-36 Score=207.91 Aligned_cols=171 Identities=30% Similarity=0.624 Sum_probs=146.8
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
.....++.+||+++|++|||||||+++|+++.+ ..+.+|.+..+..+...+..+.+||+||++.+...+..+++++|++
T Consensus 15 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 344557789999999999999999999998874 4567899988888888999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
++|+|++++++++.+..|+..+.......+.|+++|+||+|+.+....+++...+........++++++|||++|.|+++
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 99999999999999999999887754456899999999999988766677777766655556778999999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|+++.+.+.++
T Consensus 175 l~~~l~~~~~~~ 186 (188)
T 1zd9_A 175 TLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 11
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=2.3e-36 Score=207.92 Aligned_cols=165 Identities=30% Similarity=0.596 Sum_probs=134.5
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+..+.+||+++|++|||||||+++|.++.+..+.||.+.....+..++..+.+|||||++.++..+..+++++|++++|+
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 55778999999999999999999999888777778888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc---------c---CCcceEEEEeec
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS---------L---RQRRWYIQAACA 159 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa 159 (180)
|++++++++....|+..+.......++|+++|+||+|+.+....+++.+...... . ...++++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 9999999999999999887765556899999999999987666666666554322 1 124679999999
Q ss_pred cCCCChHHHHHHHHHHh
Q 030289 160 TSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~ 176 (180)
++|.|++++|+++.+.+
T Consensus 181 ~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTTBSHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999998765
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.7e-36 Score=205.68 Aligned_cols=168 Identities=47% Similarity=0.857 Sum_probs=144.0
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
......+.+||+++|++|||||||+++|+++.+..+.+|.+.....+..++..+.+|||||++++...+..+++++|+++
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 44556788999999999999999999999988877778999888888889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|+|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+.+........++++++|||++|.|++++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence 99999999999999999998876544578999999999999887777777777766656667789999999999999999
Q ss_pred HHHHHHHh
Q 030289 169 LDWLSSNV 176 (180)
Q Consensus 169 ~~~l~~~~ 176 (180)
|+++.+.+
T Consensus 174 ~~~l~~~l 181 (181)
T 2h17_A 174 LEWMMSRL 181 (181)
T ss_dssp HHHHHTC-
T ss_pred HHHHHhhC
Confidence 99998753
No 13
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=5.8e-36 Score=204.61 Aligned_cols=165 Identities=36% Similarity=0.599 Sum_probs=140.8
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+..+.+||+++|++|||||||++++.++.+..+.+|.+.....+..++..+.+|||||++.++..+..+++++|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 45678999999999999999999999988777888999888888899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc-------cCCcceEEEEeeccCCCC
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS-------LRQRRWYIQAACATSGQG 164 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~~ 164 (180)
|++++++++....|+..+.......+.|+++|+||+|+.+....+++.+...... ....++++++|||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999987765557899999999999988666777766655432 234567999999999999
Q ss_pred hHHHHHHHHHHh
Q 030289 165 LYEGLDWLSSNV 176 (180)
Q Consensus 165 i~~~~~~l~~~~ 176 (180)
++++|+++.+.+
T Consensus 179 i~~l~~~l~~~l 190 (190)
T 1m2o_B 179 YLEAFQWLSQYI 190 (190)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=2.9e-36 Score=207.14 Aligned_cols=171 Identities=37% Similarity=0.645 Sum_probs=145.3
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcc--ccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
....+...+||+|+|++|||||||+++|+++.+. .+.+|++.....+...+..+.+|||||++.+...+..+++++|+
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 4566788999999999999999999999998844 45889998888888899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhccccc-------CCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc-CCcceEEEEee
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDEL-------REAVLLVFANKQDLPNAMSVSEVTDKLGLHSL-RQRRWYIQAAC 158 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~S 158 (180)
+++|||++++++++.+..|+..+...... .++|+++|+||+|+.+....+++...++.... ...++++++||
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEee
Confidence 99999999999999999999988765322 27899999999999988777777777765544 55678999999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030289 159 ATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~ 179 (180)
|++|.||+++|++|.+.+.++
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=203.92 Aligned_cols=170 Identities=41% Similarity=0.731 Sum_probs=142.3
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
......+.+||+++|++|||||||+++|++.. ...+.+|.+.....+..++..+.+|||||++.+...+..+++++|+
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 14 LVPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp -------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 34445788999999999999999999999876 4566789998888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhccccc--CCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDEL--REAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|+|++++++++....|+..+...... .+.|+++|+||+|+.+....+++.+..........++++++|||++|.|
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 173 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEG 173 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcC
Confidence 99999999999999999999888765433 5799999999999988777777776665444445678999999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030289 165 LYEGLDWLSSNVSA 178 (180)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (180)
++++|+++.+.+.+
T Consensus 174 i~~l~~~l~~~i~~ 187 (190)
T 2h57_A 174 LQEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=216.00 Aligned_cols=169 Identities=85% Similarity=1.359 Sum_probs=148.2
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+..+.+||+|+|++|||||||+++|.++.+....||++..+..+...++.+.+|||||++.+...+..+++.+|++++|
T Consensus 160 ~~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 160 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp ---CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred ccccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 34567889999999999999999999998877777899999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
||++++++++.+..|+..++......++|+++|+||+|+.+....+++...++.......++++++|||++|.||+++|+
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHH
Confidence 99999999999999998888776667899999999999998878888888888887777889999999999999999999
Q ss_pred HHHHHhhhc
Q 030289 171 WLSSNVSAK 179 (180)
Q Consensus 171 ~l~~~~~~~ 179 (180)
+|.+.+.++
T Consensus 320 ~l~~~l~~~ 328 (329)
T 3o47_A 320 WLSNQLRNQ 328 (329)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHhc
Confidence 999998765
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.9e-34 Score=195.72 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=130.3
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
......+.+||+++|++|||||||+|+|.++. ...+.+|.+..+ ..+... .+.+.+||+||++.+...+..+++++
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 90 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34456778999999999999999999999877 445556766544 233333 35677899999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeecc-C
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACAT-S 161 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~-~ 161 (180)
|++++|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++... .+...+++++++||+ +
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-----MATKYNIPYIETSAKDP 165 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-----HHHHHTCCEEEEBCSSS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH-----HHHHhCCeEEEeccCCC
Confidence 99999999999999999999988887654456899999999999976332 222221 112234679999999 9
Q ss_pred CCChHHHHHHHHHHhhhc
Q 030289 162 GQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~~ 179 (180)
+.|++++|+++.+.+.++
T Consensus 166 ~~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp CBSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 999999999999998764
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=4.3e-34 Score=190.98 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
+.+||+++|++|||||||+|+|.+.......++.+..+. .+.. ....+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 368999999999999999999997775554555554432 2333 4568899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|++++++++.+..|+..+.......++|+++|+||+|+.++... ++.. . .....+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-A----CAVVFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH-H----HHHHTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH-H----HHHHhCCcEEEeccCCCCCHHHHH
Confidence 99999999999999998877655578999999999999764432 2211 1 112234689999999999999999
Q ss_pred HHHHHHhhhc
Q 030289 170 DWLSSNVSAK 179 (180)
Q Consensus 170 ~~l~~~~~~~ 179 (180)
+++.+.+.++
T Consensus 156 ~~l~~~~~~~ 165 (166)
T 3q72_A 156 EGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998765
No 19
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=1.5e-33 Score=217.84 Aligned_cols=168 Identities=70% Similarity=1.223 Sum_probs=152.1
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVV 91 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 91 (180)
..++.+||+++|.+|||||||+|+|.++.+..+.+|++..+..+...++.+.+|||||++.+...+..+++++|++++||
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~ 397 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 397 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 34678999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 92 DSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
|++++++++....|+..++......++|+++|+||+|+.+....+++...++.......++++++|||++|.||+++|++
T Consensus 398 D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999987666678999999999999887778888888887777778889999999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
|.+.+.++
T Consensus 478 l~~~~~~~ 485 (497)
T 3lvq_E 478 LTSNYKSK 485 (497)
T ss_dssp HHHHCC--
T ss_pred HHHHHHhc
Confidence 99987654
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=192.98 Aligned_cols=164 Identities=18% Similarity=0.363 Sum_probs=127.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
+++||+++|++|||||||+++|.++. ...+.+|.+..+ ..+.. ....+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999888 445567777554 34444 34689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++....++........+...+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999988876543 3579999999999986541111111111111122345689999999999999999
Q ss_pred HHHHHHhhhc
Q 030289 170 DWLSSNVSAK 179 (180)
Q Consensus 170 ~~l~~~~~~~ 179 (180)
+++.+.+.++
T Consensus 161 ~~l~~~i~~k 170 (170)
T 1ek0_A 161 LGIGEKIPLK 170 (170)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999887653
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.3e-33 Score=187.42 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=126.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
++.+||+++|++|||||||+++|.++.+ ..+.+|.+..+.. +.. ....+.+||+||++.+...+..+++++|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3578999999999999999999998773 4455676654432 223 35689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCC-cceEEEEeeccCCCChH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQ-RRWYIQAACATSGQGLY 166 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~ 166 (180)
|||++++.+++.+..|+..+.......+.|+++|+||+|+.++.. .++.... ... .+.+++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL-----ARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTSCEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHH-----HHHccCCcEEEecCCCCCCHH
Confidence 999999999999998888876654446899999999999975432 2222221 111 25689999999999999
Q ss_pred HHHHHHHHHhh
Q 030289 167 EGLDWLSSNVS 177 (180)
Q Consensus 167 ~~~~~l~~~~~ 177 (180)
++++++.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 22
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=188.43 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=117.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccccccccee--EEEEEEc--CeEEEEEEcCCCCC--ChhhHHhhccccCEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NVSFTVWDVGGQDK--IRPLWRHYFQNTHGL 87 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~~~~~~ 87 (180)
++.+||+++|++|||||||+++|.+.......++.+.. ...+... .+.+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46799999999999999999999988755444555543 3444554 35789999999987 567788889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|||++++.+++.+..|+..+.......++|+++|+||+|+.+... .++... .....+++++++||++|.|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-----CAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-----HHHHHTSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-----HHHHcCCeEEEEecCCCCCH
Confidence 99999999999999999988876654445799999999999976433 222211 11223468999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|+++.+.+.++
T Consensus 157 ~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 157 AELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 23
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=2.6e-33 Score=187.13 Aligned_cols=161 Identities=20% Similarity=0.288 Sum_probs=126.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
++.+||+++|++|+|||||+++|.++.+ ..+.+|.+..+. .+... .+.+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4679999999999999999999998873 444566664443 34443 4689999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++....|+..+.......+.|+++|+||+|+.++. ..++.... +...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCCCHHH
Confidence 99999999999999998888765444589999999999986533 23332222 123356899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|+++.+.+.++
T Consensus 157 l~~~l~~~i~~~ 168 (168)
T 1u8z_A 157 VFFDLMREIRAR 168 (168)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 999999988754
No 24
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=192.14 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=131.0
Q ss_pred HHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhcc
Q 030289 7 RLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQ 82 (180)
Q Consensus 7 ~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~ 82 (180)
..++..+++.+||+|+|++|||||||+++|.++. ...+.+|.+..+ ..+...+ +.+.+||+||++.+...+..+++
T Consensus 5 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (206)
T 2bov_A 5 KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR 84 (206)
T ss_dssp ------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred cccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHh
Confidence 4455667788999999999999999999999887 344556666443 3444443 58999999999999999999999
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
.+|++++|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++.... +...+++++++||+
T Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~ 159 (206)
T 2bov_A 85 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAK 159 (206)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTT
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHH-----HHHhCCeEEEEeCC
Confidence 999999999999999999999998888765444589999999999997633 23333222 12335689999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030289 161 SGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~ 178 (180)
+|.|++++|+++.+.+.+
T Consensus 160 ~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 160 TRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998765
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.6e-32 Score=186.70 Aligned_cols=161 Identities=17% Similarity=0.247 Sum_probs=125.3
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
....+.+.+||+++|++|||||||+++|+++.+. .+.+|.+.....+...+ +.+.+|||+|++.+. +++++|
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 4455688999999999999999999999988843 45566554445566654 678889999998876 778899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC----CCCHhHHHhHhCCCccCCc-ceEEEEeecc
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN----AMSVSEVTDKLGLHSLRQR-RWYIQAACAT 160 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~ 160 (180)
++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.. ....++.... +... .+++++|||+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~Sa~ 162 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKL-----STDLKRCTYYETCAT 162 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHH-----HHHTTTCEEEEEBTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHH-----HHHcCCCeEEEecCC
Confidence 9999999999999999999999987665446799999999999842 2222222211 1122 2689999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
+|.||+++|+++.+.+.++
T Consensus 163 ~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 163 YGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 26
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.8e-33 Score=190.54 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=128.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
.+.+||+++|++|||||||+++|.++. ...+.+|.+..+ ..+...+ +.+.+|||||++.+...+..+++++|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 468999999999999999999999777 445567777554 3344444 678999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+.......++|+++|+||+|+.++.. .++.... +...+++++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL-----AESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCTTSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHH-----HHHhCCcEEEEecCCCCCHHH
Confidence 999999999999999998887665556899999999999965433 2222211 223356899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|+++.+.+.++
T Consensus 159 l~~~l~~~~~~~ 170 (181)
T 3t5g_A 159 VFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 27
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=195.04 Aligned_cols=168 Identities=14% Similarity=0.153 Sum_probs=126.0
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE---EEEcCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET---VEYKNVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
+.....+.+||+++|++|||||||+|+|.++. ...+.+|.+..+.. +....+.+.+|||||++.+...+..+++++
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34445789999999999999999999999888 44445666644422 223568899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
|++++|||++++++++.+..|+..+.......++|+++|+||+|+.++........ .......+++++++||++|.|
T Consensus 97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~---~~~~~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEG---KKLAESWGATFMESSARENQL 173 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHH---HHHHHHHTCEEEECCTTCHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHH---HHHHHHhCCeEEEEeCCCCCC
Confidence 99999999999999999999999987765556899999999999875433221110 011123456899999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
++++|+++.+.+.+.
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988754
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.3e-33 Score=188.94 Aligned_cols=163 Identities=18% Similarity=0.267 Sum_probs=131.4
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
.+.+.+||+++|++|||||||+++|+++. ...+.+|++..+. .+...+ ..+.+|||||++++...+..+++++|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 46778999999999999999999999887 4445567765543 344443 6889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+ ....+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS-AF----GASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH-HH----HHHcCCeEEEecCCCCCCH
Confidence 99999999999999999988886654456889999999999876433 22222 11 1233568999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|+++.+.+.++
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=3.8e-33 Score=186.77 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=128.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
+++.+||+++|++|||||||+++|+++.. ..+.+|.+..+. .+.. ....+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 56789999999999999999999998773 344566665543 3444 357899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.++.. .++.... +...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi 156 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSY-----ADDNSLLFMETSAKTSMNV 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence 99999999999999999988876543 35799999999999865322 2222221 1234568999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030289 166 YEGLDWLSSNVSA 178 (180)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (180)
+++++++.+.+.+
T Consensus 157 ~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 157 NEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 30
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.1e-33 Score=192.97 Aligned_cols=165 Identities=19% Similarity=0.325 Sum_probs=124.4
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCCh-hhHHhhcc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIR-PLWRHYFQ 82 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~-~~~~~~~~ 82 (180)
.....++.+||+++|++|||||||+++|+++.+ ..+.+|.+.. ...+...+ +.+.+|||||++.+. ..+..+++
T Consensus 13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (189)
T 1z06_A 13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92 (189)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence 445567889999999999999999999998773 3455666644 34455544 789999999999887 78899999
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeecc
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
++|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+ ....+++++++||+
T Consensus 93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~ 167 (189)
T 1z06_A 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ-KF----ADTHSMPLFETSAK 167 (189)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCCEEECCSS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH-HH----HHHcCCEEEEEeCC
Confidence 9999999999999999999999988887654456899999999999965432 22222 11 12234579999999
Q ss_pred CC---CChHHHHHHHHHHhhh
Q 030289 161 SG---QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~---~~i~~~~~~l~~~~~~ 178 (180)
++ .|++++|.++.+.+.+
T Consensus 168 ~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 168 NPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SGGGGSCHHHHHHHHC-----
T ss_pred cCCcccCHHHHHHHHHHHHhh
Confidence 99 9999999999988754
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.2e-33 Score=189.53 Aligned_cols=168 Identities=17% Similarity=0.322 Sum_probs=127.4
Q ss_pred HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhh
Q 030289 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHY 80 (180)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~ 80 (180)
++-....+++++||+++|++|||||||+++|+++. ...+.+|.+..+ ..+...+ ..+.+|||||++.+...+..+
T Consensus 4 ~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 83 (179)
T 2y8e_A 4 SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 83 (179)
T ss_dssp --------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHH
T ss_pred ccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHH
Confidence 33334446778999999999999999999999877 444566666444 4444544 689999999999999999999
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEee
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
++++|++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++.. .++.... +...+++++++|
T Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~S 157 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERK-----AKELNVMFIETS 157 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEEEB
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHH-----HHHcCCeEEEEe
Confidence 999999999999999999999999988876532 35789999999999875432 2222211 123356899999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030289 159 ATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~ 179 (180)
|+++.|++++++++.+.+.++
T Consensus 158 a~~~~~i~~l~~~l~~~~~~~ 178 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAAALPGM 178 (179)
T ss_dssp TTTTBSHHHHHHHHHHTCC--
T ss_pred CCCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999987654
No 32
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.6e-33 Score=188.45 Aligned_cols=162 Identities=17% Similarity=0.311 Sum_probs=127.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccc--eeEEEEEEcC---eEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---VSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.++.+||+++|++|||||||+++|.++.+ ..+.+|++ +....+...+ ..+.+|||||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 46789999999999999999999998774 44557776 4455666654 899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
+++|||++++++++.+..|+..+..... ....|+++|+||+|+.+... .++.... ....+++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF-----CQENGFSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH-----HHHcCCcEEEEeCCCC
Confidence 9999999999999988888877754321 12344899999999975322 2222211 1223568999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
.|++++|+++.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988764
No 33
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=2.4e-33 Score=192.19 Aligned_cols=163 Identities=24% Similarity=0.304 Sum_probs=128.4
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCccc-----------cccccceeEEEEE-----EcCeEEEEEEcCCCCCC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEIVT-----------TIPTIGFNVETVE-----YKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~-----------~~~t~~~~~~~~~-----~~~~~~~i~D~~G~~~~ 73 (180)
...+...+||+++|++|||||||++.+.+..... +.+|++..+.... ...+.+.+|||||++.+
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3445678999999999999999998776655333 2345554443322 24568999999999999
Q ss_pred hhhHHhhccccCEEEEEEECC------ChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCcc
Q 030289 74 RPLWRHYFQNTHGLIFVVDSN------DRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSL 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~ 147 (180)
...+..+++++|++++|||++ +.+++..+..|+..+.. ...++|+++|+||+|+.+....++..+...
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---- 161 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDALPVEMVRAVVD---- 161 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTCCCHHHHHHHHC----
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccccCHHHHHHHHH----
Confidence 999999999999999999999 56777788888887732 346899999999999988766666554433
Q ss_pred CCcce-EEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 148 RQRRW-YIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 148 ~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
..++ +++++||++|.|++++|+++.+.+.++
T Consensus 162 -~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 162 -PEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp -TTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred -hcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 3455 899999999999999999999988754
No 34
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.5e-33 Score=186.39 Aligned_cols=160 Identities=17% Similarity=0.242 Sum_probs=126.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee-EEEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN-VETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
++++||+++|++|||||||+++|.++. ...+.+|.+.. ...+... ...+.+||+||++.+...+..+++++|++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 357899999999999999999999877 33445565533 3344444 3569999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|+|++++.+++.+..|+..+.......+.|+++|+||+|+.++.. .++... .....+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA-----LAEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH-----HHHHHTSCEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH-----HHHHhCCCEEEecCCCCcCHHH
Confidence 999999999999999988887654446899999999999865332 222111 1122345799999999999999
Q ss_pred HHHHHHHHhhh
Q 030289 168 GLDWLSSNVSA 178 (180)
Q Consensus 168 ~~~~l~~~~~~ 178 (180)
+++++.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 35
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=7e-33 Score=187.04 Aligned_cols=161 Identities=18% Similarity=0.316 Sum_probs=127.8
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
...+.+||+++|++|||||||+++|+++.. ..+.+|.+..+ ..+.. ....+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 346689999999999999999999998883 44456666443 34444 34689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++.. .++..+. +...+++++++||++|.|
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQF-----AEENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTT
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCC
Confidence 999999999999999999888775432 35789999999999965332 2332221 122456899999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030289 165 LYEGLDWLSSNVSA 178 (180)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (180)
++++|+++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998865
No 36
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-33 Score=191.91 Aligned_cols=160 Identities=19% Similarity=0.307 Sum_probs=128.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..+.+||+++|++|||||||+++|+++. ...+.+|++..+ ..+..++ +.+.+|||||++.+...+..+++++|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 3567999999999999999999999887 345567777554 3455544 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...++++++|||++|.|+
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEF-----SEAQDMYYLETSAKESDNV 176 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999988775432 35789999999999875332 2222211 1233467999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030289 166 YEGLDWLSSNVSA 178 (180)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (180)
+++|.++.+.+.+
T Consensus 177 ~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 177 EKLFLDLACRLIS 189 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988765
No 37
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.9e-33 Score=186.60 Aligned_cols=162 Identities=19% Similarity=0.389 Sum_probs=122.1
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc--cccccccceeEEE--EEEc--CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
..++.+||+++|++|||||||+++|+++.+ ..+.+|++..+.. +... .+.+.+|||||++.+...+..+++++|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 456789999999999999999999998874 3556777766543 3444 458999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++.. .++.... ....+++++++||+++.
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~ 159 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKL-----AKEYGLPFMETSAKTGL 159 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEeCCCCC
Confidence 9999999999999999999888776543 25789999999999976432 2222211 12234679999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030289 164 GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (180)
|++++++++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 160 NVDLAFTAIAKELKRR 175 (180)
T ss_dssp THHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988754
No 38
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=190.90 Aligned_cols=161 Identities=20% Similarity=0.350 Sum_probs=124.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
....+||+++|++|||||||+++|.++.+ ..+.+|++.. ...+..++ +.+.+||+||++++...+..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 35679999999999999999999998874 4556776644 44555554 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcce-EEEEeeccCCCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRW-YIQAACATSGQG 164 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (180)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++.... +...++ ++++|||++|.|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSL-----AEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHH-----HHHcCCCEEEEEeCCCCCC
Confidence 99999999999999999988876543 3579999999999997532 33333221 122345 899999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
|+++|+++.+.+.++
T Consensus 180 i~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 180 VEEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 39
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=7.7e-33 Score=189.13 Aligned_cols=162 Identities=17% Similarity=0.342 Sum_probs=130.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE---EEEEc-----------CeEEEEEEcCCCCCChhhH
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE---TVEYK-----------NVSFTVWDVGGQDKIRPLW 77 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~~ 77 (180)
....+||+++|++|||||||+++|+++. ...+.+|.+..+. .+... ...+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 4567999999999999999999999877 4455678776654 33333 4689999999999999999
Q ss_pred HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEE
Q 030289 78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.. ..++.... +...+++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL-----AEKYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----HHHcCCCEE
Confidence 99999999999999999999999999998888765444689999999999997532 22222211 112345799
Q ss_pred EeeccCCCChHHHHHHHHHHhhhc
Q 030289 156 AACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
++||+++.|++++|+++.+.+.++
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 40
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.3e-32 Score=186.96 Aligned_cols=163 Identities=20% Similarity=0.281 Sum_probs=129.3
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
.+++.+||+++|++|||||||+++|+++.+ ..+.+|.+..+. .+...+ +.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 356789999999999999999999998874 444566664443 344443 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|||++++++++.+..|+..+.......++|+++|+||+|+.+.. ..++.... +...+++++++||+++.|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----AEQWNVNYVETSAKTRANV 168 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHH-----HHHcCCeEEEeCCCCCCCH
Confidence 9999999999999999998888765444589999999999986532 23333222 1234568999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|+++.+.+.++
T Consensus 169 ~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 169 DKVFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 41
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.3e-33 Score=189.55 Aligned_cols=159 Identities=18% Similarity=0.363 Sum_probs=102.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+..+||+++|++|||||||+++|.++.+ ..+.+|++..+ ..+..++ +.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 4579999999999999999999998773 45567777544 4455554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 159 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKL-----ALDYGIKFMETSAKANINVE 159 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHH-----HHHHTCEEEECCC---CCHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988876532 35789999999999976432 2222211 12345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++|.++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (183)
T 2fu5_C 160 NAFFTLARDIKA 171 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 42
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.7e-32 Score=186.67 Aligned_cols=163 Identities=21% Similarity=0.346 Sum_probs=130.8
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.+.+.+||+++|++|||||||+++|++.. ...+.+|.+..+ ..+.. ..+.+.+|||||++.+...+..+++++|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34668999999999999999999999887 445567766544 34444 35789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
+++|+|++++.++..+..|+..+.......++|+++|+||+|+.+.. ..++.... +...+++++++||+++.|+
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF-----ARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHH-----HHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999888765444679999999999995432 22222211 1234568999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|+++.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 166 QCAFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988653
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=189.01 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=123.8
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccc--eeEEEEEEc--CeEEEEEEcCCCCCChh-hHHhhccccC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYK--NVSFTVWDVGGQDKIRP-LWRHYFQNTH 85 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~--~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~ 85 (180)
.....+||+++|++|||||||+++|++.. .....++++ .....+..+ .+.+.+|||+|++.+.. ++..+++++|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 34677999999999999999999997543 222334333 344445554 46789999999988765 7888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++... .+...++++++|||++|.
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~a~~~~~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-----LAGTLSCKHIETSAALHH 173 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCEEEEEBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-----HHHHhCCEEEEEcCCCCC
Confidence 9999999999999999999998876543335799999999999976432 323221 112234689999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030289 164 GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (180)
|++++|+++++.+.++
T Consensus 174 ~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLR 189 (195)
T ss_dssp SHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988754
No 44
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.8e-32 Score=185.47 Aligned_cols=163 Identities=18% Similarity=0.308 Sum_probs=127.7
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
..+.+.+||+++|++|+|||||+++|++... ..+.+|.+..+ ..+... ...+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3456789999999999999999999998873 34456666443 344443 568999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|+|++++.+++....|+..+.... .++.|+++|+||+|+.+... .++.... +...+++++++||++|.
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 160 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTY-----AQENGLFFMETSAKTAT 160 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCEEEECCSSSCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHH-----HHHcCCEEEEEECCCCC
Confidence 9999999999999999999988876543 35899999999999975433 3332221 12335689999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030289 164 GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (180)
|++++|+++.+.+.+.
T Consensus 161 gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 161 NVKEIFYEIARRLPRV 176 (181)
T ss_dssp THHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887653
No 45
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=187.85 Aligned_cols=160 Identities=21% Similarity=0.380 Sum_probs=129.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+++|++|||||||+++|+++. ...+.++.+... ..+...+ +.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 567999999999999999999999887 445556666444 4555554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh--HHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS--EVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..... +... .....+++++++||++|.|++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKE-----FADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHH-----HHHHTTCCEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHH-----HHHHcCCcEEEEeCCCCCCHH
Confidence 9999999999999999988775543 3578999999999997654322 2111 112234579999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++|+++.+.+.++
T Consensus 168 ~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 168 QSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 46
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=9.8e-33 Score=188.29 Aligned_cols=162 Identities=19% Similarity=0.352 Sum_probs=128.7
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.....+||+++|++|||||||+++|+++.+ ..+.+|.+..+. .+.. ....+.+||+||++.+...+..+++++|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 345679999999999999999999998874 455667765543 3443 35789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...+++++++||++|.|
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRL-----ADDLGFEFFEASAKENIN 171 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHH-----HHHcCCeEEEEECCCCCC
Confidence 999999999999999999888775432 35789999999999976432 2222211 122346899999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
++++|+++.+.+.++
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=9.6e-33 Score=184.99 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=121.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..+.+||+++|++|||||||+++|+++.. ..+.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999998874 455677776554 3433 346899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.++. ..++.... +...+++++++||++|.|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESY-----AESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEEBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCeEEEecCCCCCCH
Confidence 9999999999999999988876543 23578999999999997633 22222221 1233568999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030289 166 YEGLDWLSSNVSA 178 (180)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (180)
+++|+++.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (170)
T 1z08_A 157 EELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998865
No 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-33 Score=186.62 Aligned_cols=159 Identities=24% Similarity=0.392 Sum_probs=127.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..+.+||+++|++|||||||+++|.++. ...+.++.+.. ...+...+ +.+.+||+||++.+...+..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 4678999999999999999999999887 44555666644 44555555 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|+|++++.+++.+..|+..+... .++.|+++|+||+|+.+.... .+... .....+++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi 158 (181)
T 3tw8_B 86 IVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYK-----FAGQMGIQLFETSAKENVNV 158 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHH-----HHHHcCCeEEEEECCCCCCH
Confidence 9999999999999999998888654 357999999999998764322 22111 11223457999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030289 166 YEGLDWLSSNVSA 178 (180)
Q Consensus 166 ~~~~~~l~~~~~~ 178 (180)
+++|+++.+.+.+
T Consensus 159 ~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 159 EEMFNCITELVLR 171 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 49
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=187.11 Aligned_cols=161 Identities=19% Similarity=0.320 Sum_probs=129.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeEEE--EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..+.+||+|+|++|||||||+++|++..+. .+.+|.+..+.. +.. ....+.+|||||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 456799999999999999999999988743 455677755543 333 457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.|+
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMF-----AENNGLLFLETSALDSTNV 175 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999988876542 3578999999999997533 22222221 1234568999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|+++.+.+.++
T Consensus 176 ~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 176 ELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 50
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.2e-33 Score=190.47 Aligned_cols=164 Identities=19% Similarity=0.307 Sum_probs=126.9
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhcccc
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
.......+||+++|++|||||||+++|+++.+ ..+.+|.+.. ...+...+ +.+.+|||||++.+...+..+++++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 33446789999999999999999999998874 3445565543 34555544 6899999999999998899999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
|++++|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...+++++++||+++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAF-----AREHGLIFMETSAKTA 168 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHHTCEEEEECTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHH-----HHHcCCEEEEEeCCCC
Confidence 99999999999999999999988876532 35799999999999965322 2222211 1234568999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
.|++++|+++.+.+.++
T Consensus 169 ~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 169 CNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887653
No 51
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.1e-32 Score=184.56 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=116.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEc--CeEEEEEEcCCCCCChh-hHHhhccccCEEEE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRP-LWRHYFQNTHGLIF 89 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i~ 89 (180)
.+||+++|++|||||||+++|.+.... . ..++.+.....+... .+.+.+||+||++.+.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999999866522 2 223444444555554 46788999999998875 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++... .+...+++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-----LAGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHH-----HHHHcCCcEEEecCccCCCHHH
Confidence 999999999999999999887665445899999999999874332 222221 1223356899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+|+++.+.+..+
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=3e-32 Score=185.52 Aligned_cols=161 Identities=18% Similarity=0.297 Sum_probs=124.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
.+.+||+++|++|||||||+|+|.++.. ..+.+|..... ..+...+ +.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999998773 34445554332 3344443 568889999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
|||++++.+++.+..|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999988887755556899999999999975432222222211 2234579999999999999999
Q ss_pred HHHHHHhhh
Q 030289 170 DWLSSNVSA 178 (180)
Q Consensus 170 ~~l~~~~~~ 178 (180)
+++.+.+.+
T Consensus 158 ~~l~~~~~~ 166 (189)
T 4dsu_A 158 YTLVREIRK 166 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 53
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-32 Score=190.21 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=121.0
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccce--eEEEEEEcC--eEEEEEEcCCCCC-ChhhHHhhcccc
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGF--NVETVEYKN--VSFTVWDVGGQDK-IRPLWRHYFQNT 84 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~--~~~~~~~~~--~~~~i~D~~G~~~-~~~~~~~~~~~~ 84 (180)
.....+||+++|++|||||||+|+|.+.. +.+..++++. ....+.+++ +.+.+|||+|+.. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 34567999999999999999999999644 3444444543 334455544 5678999999886 456677788899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
+++++|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++.. . .+...++++++|||++|
T Consensus 113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~----~a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-A----CAVVFDCKFIETSAAVQ 187 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-H----HHHHHTCEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-H----HHHHcCCEEEEEeCCCC
Confidence 99999999999999999999988776543345799999999999975332 22211 1 11233568999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.||+++|+++.+.+..
T Consensus 188 ~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRL 203 (211)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998754
No 54
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-32 Score=187.20 Aligned_cols=159 Identities=18% Similarity=0.354 Sum_probs=127.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+|+|++|||||||+++|++..+ ..+.+|.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 4579999999999999999999998874 455677775543 3443 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 159 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQL-----ADHLGFEFFEASAKDNINVK 159 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHH-----HHHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHH-----HHHCCCeEEEEECCCCCCHH
Confidence 9999999999999999988875432 35789999999999976432 2222111 12234689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++|+++.+.+.+
T Consensus 160 ~l~~~l~~~i~~ 171 (203)
T 1zbd_A 160 QTFERLVDVICE 171 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 55
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=187.75 Aligned_cols=162 Identities=18% Similarity=0.302 Sum_probs=129.3
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
...+.+||+++|++|+|||||+++|+++.+ ..+.+|.+..+..... ....+.+|||||++.+...+..+++++|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 346789999999999999999999998884 4566777765544333 45789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.. ..++..+. +...+++++++||+++.|
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEY-----AESIGAIVVETSAKNAIN 172 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHTTTCEEEECBTTTTBS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCcC
Confidence 999999999999999999988875532 3579999999999997532 23333322 123457899999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
++++++++.+.+.+.
T Consensus 173 i~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 173 IEELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987653
No 56
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=188.17 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=127.3
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEEc--CeEEEEEEcCCCCCChhhHHhhccccC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
+..+.+.+||+++|++|||||||+++|+++. ...+.+|.+..+. .+... .+.+.+||+||++. ...+..+++++|
T Consensus 22 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 22 SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp -----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 3345778999999999999999999999887 3445667765543 24443 47899999999988 778899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|||++++++++.+..|+..+.......++|+++|+||+|+.+... .++.... +...+++++++||++|.
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKL-----ATELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTSEEEECCTTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHH-----HHHhCCeEEEECCCcCC
Confidence 9999999999999999998888876654446899999999999876322 2222211 12235689999999999
Q ss_pred -ChHHHHHHHHHHhhhc
Q 030289 164 -GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 -~i~~~~~~l~~~~~~~ 179 (180)
|++++|+++.+.+.++
T Consensus 176 ~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 176 GNITEIFYELCREVRRR 192 (196)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 9999999999988754
No 57
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=4.3e-33 Score=186.30 Aligned_cols=159 Identities=18% Similarity=0.331 Sum_probs=126.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
++.+||+++|++|||||||+++|.++. ...+.+|.+..+ ..+... ...+.+|||||++.+...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 468999999999999999999999887 345567766444 344443 468999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.++. ..++.... ....+++++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~ 155 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGL-----AKRLKLRFYRTSVKEDLNVS 155 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECBTTTTBSSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHH-----HHHcCCeEEEEecCCCCCHH
Confidence 9999999999999999988876543 578999999999987533 22222211 12335689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++++++.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (168)
T 1z2a_A 156 EVFKYLAEKHLQK 168 (168)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999988753
No 58
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=189.52 Aligned_cols=165 Identities=19% Similarity=0.332 Sum_probs=118.0
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEc--CeEEEEEEcCCCCCChhhHHhhccc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQN 83 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~ 83 (180)
++...++.+||+++|++|||||||+++|+++.+ ..+.+|.+.. ...+..+ ...+.+|||||++.+...+..++++
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 556667899999999999999999999998873 4455666643 3445544 4679999999999999999999999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC------CC--CHhHHHhHhCCCccCCcceEEE
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN------AM--SVSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~------~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+ .. ..++.. . .+...+++++
T Consensus 101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~-~----~~~~~~~~~~ 174 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE-K----LAMTYGALFC 174 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH-H----HHHHHTCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHH-H----HHHHcCCeEE
Confidence 99999999999999999998888776443 235789999999999852 11 111111 1 1223456899
Q ss_pred EeeccCCCChHHHHHHHHHHhhhc
Q 030289 156 AACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
++||++|.|++++|.++.+.+.++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999998764
No 59
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.7e-32 Score=186.48 Aligned_cols=159 Identities=19% Similarity=0.336 Sum_probs=127.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.+.+||+++|++|||||||+++|+++.+ ..+.+|.+..+ ..+...+ +.+.+||+||++.+...+..+++++|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 5679999999999999999999998873 44556666443 4455544 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.++.. ..+.... +...+++++++||++|.|++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF-----AQENELMFLETSALTGENVE 161 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEecCCCCCCHH
Confidence 9999999999999999987765432 35789999999999965322 2222211 22345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++|+++.+.+.+
T Consensus 162 ~l~~~l~~~~~~ 173 (186)
T 2bme_A 162 EAFVQCARKILN 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 60
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.3e-32 Score=183.05 Aligned_cols=159 Identities=20% Similarity=0.331 Sum_probs=127.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE--EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE--TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.+.+||+++|++|+|||||+|+|.+.. ...+.+|.+..+. .+.. ....+.+|||||++.+...+..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 467999999999999999999999888 4455677775543 3444 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|+|++++.+++.+..|+..+... ..+..|+++|+||+|+.+... .++.. .+ ....+++++++||++|.|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAK-DY----ADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHH-HH----HHHcCCEEEEEeCCCCcCHH
Confidence 999999999999998888877553 346799999999999976432 22222 11 12335689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++++++.+.+.+
T Consensus 158 ~l~~~i~~~i~~ 169 (170)
T 1z0j_A 158 ELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=4.1e-32 Score=183.10 Aligned_cols=163 Identities=15% Similarity=0.296 Sum_probs=127.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
..+.+||+++|++|||||||+++|+++. ...+.+|.+..+ ..+...+ +.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 4568999999999999999999999887 445567777554 3444444 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++|||++++.+++.+..|+..+.... ...+.|+++|+||+|+.+. ...++...... ...+++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999999888887775432 1267899999999999742 23333332211 1234579999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030289 164 GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (180)
|++++|+++.+.+.++
T Consensus 160 gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 160 NVAAAFEEAVRRVLAT 175 (177)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 62
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.1e-31 Score=178.89 Aligned_cols=160 Identities=17% Similarity=0.278 Sum_probs=125.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+.+||+++|++|||||||+++|.++.. ..+.+|.+..+ ..+.. ..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 468999999999999999999998773 34455655433 33444 346789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
+|++++.+++.+..|+..+.......+.|+++|+||+|+.+... .++.. .+ ....+++++++||++|.|+++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQ-DL----ARSYGIPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHH-HH----HHHHTCCEEEECTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHH-HH----HHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999998988876554345799999999999876322 22222 11 12234579999999999999999
Q ss_pred HHHHHHhhhc
Q 030289 170 DWLSSNVSAK 179 (180)
Q Consensus 170 ~~l~~~~~~~ 179 (180)
+++.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (166)
T 2ce2_X 157 YTLVREIRQH 166 (166)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 9999988653
No 63
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.8e-33 Score=195.62 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=125.5
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE---EEEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET---VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
...+..+||+++|++|||||||+++|+++. ...+.+|++..+.. +....+.+.+|||+|++.+...+..+++++|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345678999999999999999999999888 44556777765542 22255789999999999999999999999999
Q ss_pred EEEEEECCChhhHHH-HHHHHHHHhcccccCCCeEEEEEecCCCCCC--------------CCHhHHHhHhCCCccCCcc
Q 030289 87 LIFVVDSNDRERIGE-AKDELHRMLSEDELREAVLLVFANKQDLPNA--------------MSVSEVTDKLGLHSLRQRR 151 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 151 (180)
+++|||++++++++. +..|+..+... .++.|+++|+||+|+.++ ...++.. ..+...+
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~ 174 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC-----AIAKQLG 174 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH-----HHHHHHT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH-----HHHHHcC
Confidence 999999999999998 67888777554 358999999999999753 2222211 1122345
Q ss_pred e-EEEEeeccCCCC-hHHHHHHHHHHhhhc
Q 030289 152 W-YIQAACATSGQG-LYEGLDWLSSNVSAK 179 (180)
Q Consensus 152 ~-~~~~~Sa~~~~~-i~~~~~~l~~~~~~~ 179 (180)
+ ++++|||++|.| |+++|+++.+.+.++
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 6 899999999998 999999999988654
No 64
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=187.93 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=122.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
.+.+.+||+++|++|||||||+++|+++. ...+.+|++..+. .+.. ..+.+.+|||||++.+... ..+++++|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34678999999999999999999999888 4455677775542 2333 4578899999999988775 5689999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeec-cCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACA-TSG 162 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~ 162 (180)
++|||++++++++.+..|+..+..... ..+.|+++|+||+|+.+... .++.... +...++++++||| ++|
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~g 170 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL-----AGRFGCLFFEVSACLDF 170 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH-----HHHHTCEEEECCSSSCS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH-----HHHcCCcEEEEeecCcc
Confidence 999999999999999999888765421 25789999999999865332 2222211 1233568999999 899
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
.||+++|+++.+.+.++
T Consensus 171 ~gv~~lf~~l~~~i~~~ 187 (187)
T 3c5c_A 171 EHVQHVFHEAVREARRE 187 (187)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 99999999999988653
No 65
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=3.6e-32 Score=187.84 Aligned_cols=160 Identities=21% Similarity=0.370 Sum_probs=128.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+|+|++|||||||+++|.++. ...+.+|.+..+ ..+...+ +.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 557999999999999999999999887 345566666444 4455543 68999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++.... +...+++++++||++|.|++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEF-----ADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHH-----HHHTTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHH-----HHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999988775442 35789999999999976432 2222211 12234679999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++|.++.+.+.++
T Consensus 160 ~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 160 DAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 66
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-33 Score=190.67 Aligned_cols=161 Identities=20% Similarity=0.356 Sum_probs=128.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
....+||+|+|++|||||||+++|+++. ...+.+|.+..+ ..+.. ..+.+.+||+||++.+...+..+++++|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 4678999999999999999999999877 344456665443 33333 678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++... .....+++++++||++|.|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQL-----LAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHHTCEEEECBTTTTBSH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHH-----HHHHcCCeEEEEECCCCCCH
Confidence 9999999999999999998887553 235899999999999865432 222211 11233568999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++|+++.+.+.++
T Consensus 174 ~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 174 RQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 67
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=8.2e-33 Score=192.49 Aligned_cols=161 Identities=20% Similarity=0.387 Sum_probs=128.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE--EEEEc------------CeEEEEEEcCCCCCChhhH
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYK------------NVSFTVWDVGGQDKIRPLW 77 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~~~~~~~ 77 (180)
..+.+||+|+|++|||||||+++|+++.+ ..+.+|++..+. .+.+. ...+.+|||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 36679999999999999999999998773 445567665443 33332 5789999999999999999
Q ss_pred HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEE
Q 030289 78 RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 78 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (180)
..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+... .++.... +...+++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~ 176 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL-----ADKYGIPYF 176 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH-----HHHTTCCEE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH-----HHHCCCcEE
Confidence 999999999999999999999999999988776544336899999999999976332 2222211 122345799
Q ss_pred EeeccCCCChHHHHHHHHHHhhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+|||+++.|++++|+++.+.+.+
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
No 68
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=8e-33 Score=189.46 Aligned_cols=160 Identities=21% Similarity=0.308 Sum_probs=125.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.++.+||+++|++|||||||+++|+++.+ ..+.+|++..+.. +.. ..+.+.+|||||++.+...+..+++++|+++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 46679999999999999999999998884 4556777755543 333 3466799999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceE-EEEeeccCC
Q 030289 89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWY-IQAACATSG 162 (180)
Q Consensus 89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~ 162 (180)
+|||++++.+++.+ ..|+..+... ..+.|+++|+||+|+.++ ...++.... +...+++ ++++||++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~ 172 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDL-----CQKLGCVAYIEASSVAK 172 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHH-----HHHHTCSCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHH-----HHhcCCCEEEEeecCCC
Confidence 99999999999997 5666655432 357999999999998753 222222211 1223344 999999999
Q ss_pred CChHHHHHHHHHHhhhc
Q 030289 163 QGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~~ 179 (180)
.|++++|+++.+.+.++
T Consensus 173 ~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 173 IGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp BSHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998765
No 69
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=186.17 Aligned_cols=164 Identities=19% Similarity=0.309 Sum_probs=124.3
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
......+||+++|++|||||||+++|+++.+ ..+.+|.+... ..+...+ +.+.+|||||++.+...+..+++++|
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 3346689999999999999999999998773 44556666443 4455543 68999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+... .++.... ... ..+.+++++||++|.
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~-~~~---~~~~~~~~~SA~~g~ 175 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKF-AQQ---ITGMRFCEASAKDNF 175 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH-HHT---STTCEEEECBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH-HHh---cCCCeEEEEeCCCCC
Confidence 999999999999999998887766443 235799999999999875432 2222211 111 125689999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030289 164 GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (180)
|++++|+++.+.+.++
T Consensus 176 gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 176 NVDEIFLKLVDDILKK 191 (192)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 70
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.7e-32 Score=182.75 Aligned_cols=159 Identities=24% Similarity=0.403 Sum_probs=121.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE--EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
..+||+++|++|+|||||+++|.++.+ ..+.+|.+..+ ..+... .+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999998873 45566666444 344443 4689999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 90 VVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 90 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++.. .+ ....+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGE-AL----AKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHH-HH----HHHHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHH-HH----HHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988776542 3578999999999995432 222222 11 1223457999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|.++.+.+.++
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 71
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=100.00 E-value=1.8e-31 Score=185.37 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=120.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEc---CeEEEEEEcCCCCCChh-hHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK---NVSFTVWDVGGQDKIRP-LWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~~~~i 88 (180)
+.+.+||+++|++|||||||+++|+++.+....+++......+..+ +..+.+|||||++.+.. .+..+++++|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999888666566666666667665 68999999999999887 7888999999999
Q ss_pred EEEECCChh-hHHHHHHHHHHHhcc--cccCCCeEEEEEecCCCCCCCCHhHHHhHhC----------------------
Q 030289 89 FVVDSNDRE-RIGEAKDELHRMLSE--DELREAVLLVFANKQDLPNAMSVSEVTDKLG---------------------- 143 (180)
Q Consensus 89 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------------------- 143 (180)
+|+|+++.. ++.....++...+.. ....++|+++|+||+|+.+....++..+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998853 455666655555432 1235789999999999987655433322111
Q ss_pred ---------CCccC-Cc--ceEEEEeeccCC------CChHHHHHHHHHHh
Q 030289 144 ---------LHSLR-QR--RWYIQAACATSG------QGLYEGLDWLSSNV 176 (180)
Q Consensus 144 ---------~~~~~-~~--~~~~~~~Sa~~~------~~i~~~~~~l~~~~ 176 (180)
..+.. .. .++|++|||++| .||+++|+++.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 01111 11 789999999999 99999999998753
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-32 Score=182.62 Aligned_cols=160 Identities=17% Similarity=0.259 Sum_probs=124.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+.+||+++|++|||||||+|+|.++.+ ..+.+|.+..+.. +.. ....+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 468999999999999999999998773 3455676654433 233 346799999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCH--hHHHhHhCCCccCCcceEEEEeeccCCCChHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSV--SEVTDKLGLHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+|++++.+++....|+..+.... ..++.|+++|+||+|+.+.... .+.. . .....+++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~-~----~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE-A----LARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH-H----HHHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH-H----HHHHhCCeEEEecCCCCcCHHH
Confidence 99999999988888877665432 2257899999999998654332 1211 1 1123356899999999999999
Q ss_pred HHHHHHHHhhhc
Q 030289 168 GLDWLSSNVSAK 179 (180)
Q Consensus 168 ~~~~l~~~~~~~ 179 (180)
+++++.+.+.++
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2e-31 Score=183.52 Aligned_cols=159 Identities=19% Similarity=0.368 Sum_probs=126.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEEcC------------------------------
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYKN------------------------------ 59 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~~~------------------------------ 59 (180)
++..+||+|+|++|||||||+++|++.. ...+.+|++..+.. +...+
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3568999999999999999999999887 34455677654433 33333
Q ss_pred ---------eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 60 ---------VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 60 ---------~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
..+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+... ...|+++|+||+|..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCcc
Confidence 78999999999999999999999999999999999999999999998888654 348999999999932
Q ss_pred C-CCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 131 N-AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
. ....++..... ...+++++++||++|.|++++|+++.+.+.++
T Consensus 161 ~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 161 KFQVDILEVQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp -CCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2 22333333221 22456899999999999999999999987653
No 74
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=3.9e-32 Score=183.50 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=119.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+.+||+++|++|||||||+++|.++.+..+.||.+..+ ..+... .+.+.+|||||+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 568999999999999999999999988666778877543 334443 46789999999886 4678889999999
Q ss_pred EECCChhhHHHHHHHHHHHhcc--cccCCCeEEEEEecCCCCC--C--CCHhHHHhHhCCCccCC-cceEEEEeeccCCC
Q 030289 91 VDSNDRERIGEAKDELHRMLSE--DELREAVLLVFANKQDLPN--A--MSVSEVTDKLGLHSLRQ-RRWYIQAACATSGQ 163 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~iiiv~nK~D~~~--~--~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~ 163 (180)
||++++++++.+..|+..+... ...+++|+++|+||+|+.+ . ...++.... +.. .+++++++||++|.
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL-----XADMKRCSYYETXATYGL 154 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHH-----HHHHSSEEEEEEBTTTTB
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHH-----HHhhcCCeEEEEeccccC
Confidence 9999999999999875444322 1235789999999999842 2 223332221 111 24789999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
|++++|+++.+.+.+
T Consensus 155 ~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVT 169 (178)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988765
No 75
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=9.1e-33 Score=192.84 Aligned_cols=164 Identities=19% Similarity=0.315 Sum_probs=132.6
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE----cCeEEEEEEcCCCCCChhhHHhhccc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWRHYFQN 83 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~ 83 (180)
.+..+...+||+++|++|||||||+++|+.+. ...+.+|.+........ ..+.+.+|||||++.+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 44556788999999999999999999977665 44556777765554433 45789999999999999999999999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
+|++++|||++++.+++.+..|+..+... ..++|+++|+||+|+.+..... .........++++++|||++|.
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCG-----GGCCHHHHHTCEEEECBGGGTB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccH-----HHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999999999999998888764 2578999999999997643221 1122233456789999999999
Q ss_pred ChHHHHHHHHHHhhhc
Q 030289 164 GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~~ 179 (180)
|++++|.++.+.+...
T Consensus 161 gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGD 176 (221)
T ss_dssp TTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999988654
No 76
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=9.7e-33 Score=189.00 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=125.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
.+.+.+||+++|++|||||||+++|+++.+ ..+.+|++..+ ..+...+ +.+.+||+||++++...+..+++++|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 345779999999999999999999998874 44566766444 2344443 7899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh---------HhCCCccCCcce-EEEE
Q 030289 88 IFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD---------KLGLHSLRQRRW-YIQA 156 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~ 156 (180)
++|||++++++++.+. .|+..+... .+++|+++|+||+|+.+.....+... ......+...+. ++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999887 677776543 24789999999999976321100000 000001112233 7999
Q ss_pred eeccCCCChHHHHHHHHHHhhh
Q 030289 157 ACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
|||++|.|++++|+++.+.+..
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998754
No 77
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.1e-32 Score=189.82 Aligned_cols=160 Identities=18% Similarity=0.349 Sum_probs=122.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...+||+|+|++|||||||+++|.+..+ ..+.+|.+.. ...+...+ +.+.+|||||++.+...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 5679999999999999999999998874 3455666644 34455554 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+... .++.... +...+++++++||+++.||+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~ 164 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTF-----AQENQLLFTETSALNSENVD 164 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHH-----HHHTTCEEEECCCC-CCCHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999988875442 35789999999999875332 2222211 12345689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++|+++.+.+.++
T Consensus 165 ~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 165 KAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 78
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.98 E-value=2.1e-32 Score=188.38 Aligned_cols=159 Identities=20% Similarity=0.330 Sum_probs=120.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-ccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.+.+||+|+|++|||||||+++|+++.+ ..+.+|.+.. ...+...+ ..+.+|||||++.+...+..+++++|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 5679999999999999999999998773 4455666543 44455544 78999999999888888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..+.... +...++++++|||++|.|++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRF-----AQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHH-----HHHTTCEEEEECTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHH-----HHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999988775432 35799999999999865332 2222211 12345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++|.++.+.+.+
T Consensus 177 ~l~~~l~~~i~~ 188 (200)
T 2o52_A 177 EAFLKCARTILN 188 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 79
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=3e-31 Score=180.95 Aligned_cols=164 Identities=16% Similarity=0.259 Sum_probs=116.6
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
...++.+||+++|++|||||||+++|+++.. ..+.+|.+..+ ..+... .+.+.+||+||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 3346789999999999999999999998773 34445555433 334443 3679999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCCh
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGL 165 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 165 (180)
+++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+.. ..++..+. ....+++++++||+++.|+
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHEL-----AKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHH-----HHHHTCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHH-----HHHcCCeEEEEeCCCCCCH
Confidence 99999999999999998888877654333578999999999987632 22222221 1223457999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030289 166 YEGLDWLSSNVSAK 179 (180)
Q Consensus 166 ~~~~~~l~~~~~~~ 179 (180)
+++++++.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~ 184 (190)
T 3con_A 171 EDAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=9.5e-32 Score=187.24 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=126.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEE--c---CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEY--K---NVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~--~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
+...+||+++|++|||||||+|+|+++. ...+.+|.+........ . .+.+.+|||||++.+...+..++.++|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4568999999999999999999999877 44445777766555444 1 1789999999999998889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
+++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+... .++.. .+ +...+++++++||++|.|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVM-EV----LKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHH-HH----TTTCCCEEEEEBTTTTBT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH-HH----HHHcCCcEEEEecCCCCC
Confidence 999999999999999988888775442 34689999999999976432 22222 22 234467899999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
++++|+++.+.+.+.
T Consensus 162 v~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 162 FGLPFLHLARIFTGR 176 (218)
T ss_dssp TTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988754
No 81
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.98 E-value=1e-31 Score=185.58 Aligned_cols=162 Identities=16% Similarity=0.242 Sum_probs=126.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEE--EEEc--CeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
+...+||+|+|++|||||||+++|++.. ...+.+|.+..... +... .+.+.+|||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 4678999999999999999999999887 44556677655443 3333 47899999999999988889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 88 IFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCC
Confidence 99999999999999988888775432 12478999999999997432 2222222111 1235679999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
|++++|+++.+.+.+
T Consensus 161 gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 161 NVEQAFQTIARNALK 175 (207)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 82
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.98 E-value=5.5e-32 Score=183.07 Aligned_cols=163 Identities=14% Similarity=0.246 Sum_probs=115.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEc---CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYK---NVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
+.+.+||+++|++|||||||+++|++.. ...+.+|.+.. ...+... ...+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 4678999999999999999999999887 44455666543 3344433 4789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCC---CHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 87 LIFVVDSNDRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAM---SVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
+++|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+.... ..++...... ...+.+++++||+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAK 160 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecC
Confidence 999999999999999999888776432 22678999999999985421 2222222111 0234579999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
+|.|++++|+++.+.+.++
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 83
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=2.5e-32 Score=187.90 Aligned_cols=162 Identities=16% Similarity=0.147 Sum_probs=118.7
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
.....+.+||+++|++|||||||+++|+++. ...+.+|++..+. .+..++ +.+.+|||||++.+...+..+++++|
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3456789999999999999999999999887 3445567764443 344444 57889999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCC--------------CHhHHHhHhCCCccCCc
Q 030289 86 GLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAM--------------SVSEVTDKLGLHSLRQR 150 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~ 150 (180)
++++|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+.. ..++... .....
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 166 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-----LAEEI 166 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-----HHHhc
Confidence 999999999999999987 677766543 2479999999999986531 1111111 11122
Q ss_pred ce-EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 151 RW-YIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 151 ~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+. ++++|||++|.|++++|+++.+.+.+
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 34 89999999999999999999998764
No 84
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.7e-31 Score=182.45 Aligned_cols=165 Identities=18% Similarity=0.250 Sum_probs=121.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.+.++||+++|++|||||||+++|+++.+ ..+.+|++..+ ..+... .+.+.+|||||++.+...+..+++++|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45678999999999999999999998873 34456666444 334444 368999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC---------ccCCcce-EEEEe
Q 030289 89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH---------SLRQRRW-YIQAA 157 (180)
Q Consensus 89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~ 157 (180)
+|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+.....+........ .+...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999888 5666655432 2578999999999997642222211111111 1112233 89999
Q ss_pred eccCCCChHHHHHHHHHHhhhc
Q 030289 158 CATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
||++|.|++++|+++.+.+.++
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 85
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=184.78 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=107.9
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeE-EEEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV-ETVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
...+.+||+++|++|||||||+++|+++.+ ..+.+|.+..+ ..+.. ..+.+.+|||||++.+...+..+++++|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 345689999999999999999999998773 34456665443 23444 345899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------CCccCCcce-EEEE
Q 030289 88 IFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---------LHSLRQRRW-YIQA 156 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~ 156 (180)
++|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+.....+...... ...+...+. ++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 9999999999999887 677666443 25789999999999976432211111100 011122344 8999
Q ss_pred eeccCCCChHHHHHHHHHHhhhc
Q 030289 157 ACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
|||++|.|++++|+++.+.+.+.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC
T ss_pred ecCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=1.7e-32 Score=189.40 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=96.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC--Cc-cccccccc--eeEEEEEEc----CeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG--EI-VTTIPTIG--FNVETVEYK----NVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~-~~~~~t~~--~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
...+||+++|++|||||||+++|+++ .+ ..+.+|++ +....+... .+.+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57899999999999999999999988 53 35567776 344455554 57899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcccc--cCCCeEEEEEecCCCCC-CCC--HhHHHhHhCCCccCCcceEEEEeec
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSEDE--LREAVLLVFANKQDLPN-AMS--VSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiiv~nK~D~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
|++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+ ... .++.... +...+++++++||
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa 172 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW-----ATTNTLDFFDVSA 172 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHH-----HHHTTCEEEECCC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHH-----HHHcCCEEEEecc
Confidence 999999999999999999999888865432 25799999999999976 322 2332221 1223468999999
Q ss_pred cC-CCChHHHHHHHHHHhhh
Q 030289 160 TS-GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~-~~~i~~~~~~l~~~~~~ 178 (180)
++ +.|++++|+++.+.+.+
T Consensus 173 ~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 173 NPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99 99999999999998764
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.8e-31 Score=181.54 Aligned_cols=162 Identities=15% Similarity=0.243 Sum_probs=125.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEEE-EEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET-VEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
....+||+++|++|||||||+++|.++.+ ..+.+|.+..+.. +.. ....+.+|||||++.+...+..+++++|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 35679999999999999999999998773 3455676654433 233 3468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccc-cCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDE-LREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|||++++.+++.+..|+..+..... ..+.|+++|+||+|+.+.. ..++.. .+ ....+++++++||++|.|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQ-AV----AQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHH-HH----HHHHTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHH-HH----HHHhCCeEEEEecCCCCCHH
Confidence 99999999999888887766544321 2478999999999997632 222222 11 12334689999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030289 167 EGLDWLSSNVSAK 179 (180)
Q Consensus 167 ~~~~~l~~~~~~~ 179 (180)
++|+++.+.+.++
T Consensus 160 ~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 160 ELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987653
No 88
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=2.4e-31 Score=180.69 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=123.2
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+...+||+++|++|||||||+++|.++.+ ..+.+|.+..+. .+.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 46689999999999999999999998874 445677765443 2333 4578999999999999989999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCC--------------CCHhHHHhHhCCCccCCcc-e
Q 030289 89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNA--------------MSVSEVTDKLGLHSLRQRR-W 152 (180)
Q Consensus 89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 152 (180)
+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.++ ...++... .+...+ .
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~ 156 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAA 156 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-----HHHHcCCc
Confidence 99999999999988 5777666443 257999999999999742 11221111 111223 5
Q ss_pred EEEEeecc-CCCChHHHHHHHHHHhhhc
Q 030289 153 YIQAACAT-SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 153 ~~~~~Sa~-~~~~i~~~~~~l~~~~~~~ 179 (180)
++++|||+ ++.|++++|+.+.+.+.++
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~k 184 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACVNK 184 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHHTC
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHhcC
Confidence 89999999 6899999999999988754
No 89
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4e-31 Score=183.29 Aligned_cols=162 Identities=23% Similarity=0.371 Sum_probs=125.2
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccC
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTH 85 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~ 85 (180)
......+||+|+|++|||||||+++|++.. ...+.+|++.. ...+...+ +.+.+|||||++.+...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 344678999999999999999999999877 34556666644 44555555 78999999999999888999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC-CHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM-SVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
++++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++.. .+ ....+++++++||+++.|
T Consensus 95 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGE-AL----AKELGIPFIESSAKNDDN 168 (213)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHH-HH----HHHHTCCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHH-HH----HHHcCCEEEEEeCCCCCC
Confidence 9999999999999999888888776542 2478999999999995422 222221 11 112345799999999999
Q ss_pred hHHHHHHHHHHhhh
Q 030289 165 LYEGLDWLSSNVSA 178 (180)
Q Consensus 165 i~~~~~~l~~~~~~ 178 (180)
++++|.++.+.+.+
T Consensus 169 i~~l~~~l~~~~~~ 182 (213)
T 3cph_A 169 VNEIFFTLAKLIQE 182 (213)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 90
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=8.9e-32 Score=185.30 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=124.1
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEc--CeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.++...+||+++|++|||||||+++|.++. ...+.+|++..+ ..+... .+.+.+|||||++.+...+..+++++|+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 345778999999999999999999999887 344556666443 334443 4689999999999999999999999999
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------CCccCCcce-EEE
Q 030289 87 LIFVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---------LHSLRQRRW-YIQ 155 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~ 155 (180)
+++|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+.....+...... ...+...+. +++
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 177 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYL 177 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEE
Confidence 9999999999999988 4566555432 25789999999999976422111111100 011112234 799
Q ss_pred EeeccCCCChHHHHHHHHHHhhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
++||++|.|++++|+++.+.+.+
T Consensus 178 ~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 178 ECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeeCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999998754
No 91
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=3.1e-31 Score=180.05 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=123.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
++.+||+++|++|||||||+++|.++. ...+.+|++..+. .+.. ..+.+.+|||||++.+...+..+++++|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 567999999999999999999999877 3445566664432 3344 34678899999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC---------CCccCCcce-EEEEee
Q 030289 90 VVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG---------LHSLRQRRW-YIQAAC 158 (180)
Q Consensus 90 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~S 158 (180)
|||++++.+++... .|+..+... .++.|+++|+||+|+.+.....+...... ...+...+. +++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999887 576666443 24789999999999865421111111100 011122344 899999
Q ss_pred ccCCCChHHHHHHHHHHhhhc
Q 030289 159 ATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~~ 179 (180)
|++|.|++++|+++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988653
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=8.6e-32 Score=184.70 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=116.5
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE--E--EE-EcCeEEEEEEcCCCCCChhhH---Hhh
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--T--VE-YKNVSFTVWDVGGQDKIRPLW---RHY 80 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~--~--~~-~~~~~~~i~D~~G~~~~~~~~---~~~ 80 (180)
....+.+.+||+++|++|||||||++++.+........+.+.... . +. ...+.+.+|||||+++|.... ..+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 455678899999999999999999998887553332222222221 2 22 356899999999999987776 899
Q ss_pred ccccCEEEEEEECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHh----HhCCCccCCc
Q 030289 81 FQNTHGLIFVVDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTD----KLGLHSLRQR 150 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~----~~~~~~~~~~ 150 (180)
++++|++++|||++++ +++..+..|+...... .++.|+++|+||+|+.++.. ..++.. .+........
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999987 6777777777776432 35899999999999876321 111211 2222222256
Q ss_pred ceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 151 RWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 151 ~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
++++++|||++ .||+++|..+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78999999999 99999999999876
No 93
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.1e-31 Score=183.03 Aligned_cols=163 Identities=18% Similarity=0.214 Sum_probs=120.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGL 87 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 87 (180)
...+.+||+++|++|||||||+++|+.+.+ ..+.+|++..+. .+.. ..+.+.+|||||++.+...+..+++++|++
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 347789999999999999999999998774 345566653332 3333 446677999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC---------ccCCcc-eEEEE
Q 030289 88 IFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH---------SLRQRR-WYIQA 156 (180)
Q Consensus 88 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~ 156 (180)
++|||++++.+++... .|+..+.... .+.|+++|+||+|+.+.....+........ .+...+ .++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 9999999999999987 6766664432 579999999999987643222221111111 111122 36999
Q ss_pred eeccCCCChHHHHHHHHHHh
Q 030289 157 ACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~ 176 (180)
|||++|.|++++|+++.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
No 94
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=3.6e-31 Score=181.10 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=116.5
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccc--eeEEEEEEcC--eEEEEEEcCCCCC-ChhhHHhhccccC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIG--FNVETVEYKN--VSFTVWDVGGQDK-IRPLWRHYFQNTH 85 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~-~~~~~~~~~~~~~ 85 (180)
.+..+||+++|++|||||||+|+|.+.. +....++++ .....+.+++ +.+.+|||+|... +......+++.+|
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 4567999999999999999999998633 344334444 3334455544 5678999999776 4556777888999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEeeccCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAACATSGQ 163 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (180)
++++|||++++++++....|+..+.......+.|+++|+||+|+..... .++.. . .+...++++++|||++|.
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~----~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-A----XAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-H----HHHHTTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-H----HHHHhCCceEEeccccCC
Confidence 9999999999999999998887765433335789999999999865322 22211 1 112234589999999999
Q ss_pred ChHHHHHHHHHHhhh
Q 030289 164 GLYEGLDWLSSNVSA 178 (180)
Q Consensus 164 ~i~~~~~~l~~~~~~ 178 (180)
||+++|+++.+.+..
T Consensus 158 ~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 158 NVKELFEGIVRQVRL 172 (192)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988753
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=8e-31 Score=181.81 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=123.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIF 89 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 89 (180)
.+.+||+++|++|||||||+++|.++. ...+.+|++..+. .+.. ..+.+.+|||||++.+...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 467999999999999999999999887 3455677764443 3334 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCC----------CHhHHHhHhCCCccCCcc-eEEEEe
Q 030289 90 VVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAM----------SVSEVTDKLGLHSLRQRR-WYIQAA 157 (180)
Q Consensus 90 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (180)
|||++++++++.+. .|+..+... .++.|+++|+||+|+.++. ..++... .+...+ .+++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE-----LRKQIGAAAYIEC 159 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH-----HHHHHTCSEEEEC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH-----HHHHcCCceEEEc
Confidence 99999999999987 677766543 2479999999999986542 1111111 112223 389999
Q ss_pred eccCCCChHHHHHHHHHHhhhc
Q 030289 158 CATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
||++|.|++++|+++.+.+.+.
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 160 SSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp CTTTCTTHHHHHHHHHHHHHCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999987653
No 96
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=2.2e-31 Score=180.24 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=112.2
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE---EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE---TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
..+.+||+++|++|+|||||++++..+.+ ..+.+|++..+. .+....+.+.+|||||++++...+..+++++|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 35689999999999999999999998773 344566553321 12334567889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCH------------hHHHhHhCCCccCCcce-EE
Q 030289 89 FVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSV------------SEVTDKLGLHSLRQRRW-YI 154 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~------------~~~~~~~~~~~~~~~~~-~~ 154 (180)
+|||++++.+++.+. .|+..+... .++.|+++|+||+|+.+.... ++.. ......+. ++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~ 157 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE-----ELKKLIGAPAY 157 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHH-----HHHHHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHH-----HHHHHcCCCEE
Confidence 999999999999987 577666443 247899999999998654221 1111 11122343 89
Q ss_pred EEeeccCCCChHHHHHHHHHHhhh
Q 030289 155 QAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
++|||++|.|++++|+++.+.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998754
No 97
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=7e-31 Score=181.38 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=123.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EEEE--cCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TVEY--KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
....+||+++|++|||||||+++|.++.+ ..+.+|.+..+. .+.. ..+.+.+|||||++.+...+..+++++|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 46789999999999999999999998874 445677765543 2333 3578999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHhcccccCCCeEEEEEecCCCCCC--------------CCHhHHHhHhCCCccCCcc-e
Q 030289 89 FVVDSNDRERIGEA-KDELHRMLSEDELREAVLLVFANKQDLPNA--------------MSVSEVTDKLGLHSLRQRR-W 152 (180)
Q Consensus 89 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~-~ 152 (180)
+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.++ ...++... .+...+ .
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~ 177 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-----MAKQIGAA 177 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-----HHHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH-----HHHHcCCC
Confidence 99999999999988 6777766443 257999999999999742 11111111 111223 5
Q ss_pred EEEEeecc-CCCChHHHHHHHHHHhhhc
Q 030289 153 YIQAACAT-SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 153 ~~~~~Sa~-~~~~i~~~~~~l~~~~~~~ 179 (180)
++++|||+ ++.|++++|+.+.+.+.++
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~~ 205 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACVNK 205 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHhhC
Confidence 89999999 6899999999999988754
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=9.2e-32 Score=182.83 Aligned_cols=163 Identities=17% Similarity=0.276 Sum_probs=117.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC---ccccccccceeEEEEEE-------cCeEEEEEEcCCCCCChhhHHhhcccc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE---IVTTIPTIGFNVETVEY-------KNVSFTVWDVGGQDKIRPLWRHYFQNT 84 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~ 84 (180)
+++||+++|++|||||||+++|++.. ...+.+|++..+..... ..+.+.+|||+|++++...+..+++++
T Consensus 1 ~~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 1 NRMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp --CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 36899999999999999999999853 33456788877655432 467899999999998888888999999
Q ss_pred CEEEEEEECCCh-hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce----EEEEeec
Q 030289 85 HGLIFVVDSNDR-ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW----YIQAACA 159 (180)
Q Consensus 85 ~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa 159 (180)
+++++|||++++ .+++.+..|+..+... .++.|+++|+||+|+.+.....+.........+...++ .++++||
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 999999999987 5788888998887543 24789999999999976433221111111112222333 4999999
Q ss_pred cCCC-ChHHHHHHHHHHhhhc
Q 030289 160 TSGQ-GLYEGLDWLSSNVSAK 179 (180)
Q Consensus 160 ~~~~-~i~~~~~~l~~~~~~~ 179 (180)
+++. +++++++.+.+.+.+.
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC
T ss_pred ccCchhHHHHHHHHHHHHhcc
Confidence 9997 9999999999887653
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.8e-33 Score=191.87 Aligned_cols=162 Identities=21% Similarity=0.376 Sum_probs=119.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccc--eeEEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIG--FNVETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
.+.+||+|+|++|||||||+|+|+++. ...+.++.+ .....+...+ +.+.+|||||++.+...+..+++++|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 557999999999999999999999877 334445554 4455566654 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...... ..........+++++++||++|.|++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~---~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDY---TTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCS---CC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCH---HHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988885543 35799999999999875432110 0111112233467999999999999999
Q ss_pred HHHHHHHhhhc
Q 030289 169 LDWLSSNVSAK 179 (180)
Q Consensus 169 ~~~l~~~~~~~ 179 (180)
|+++.+.+.++
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 100
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.97 E-value=1.7e-30 Score=188.40 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=118.2
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCcc----ccccccceeEEEEEEcCeEEEEEEcCCCCCChh---hHHhhccccCEEEEE
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIV----TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP---LWRHYFQNTHGLIFV 90 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~~i~v 90 (180)
||+++|+.|||||||++++.++... ...||+++.+..+. ..+++++|||+|+++|+. .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 6899999999999999998766532 35689998877763 468999999999999964 468999999999999
Q ss_pred EECCCh--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCH----hHHHhHhCCCccC----CcceEEEEeecc
Q 030289 91 VDSNDR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSV----SEVTDKLGLHSLR----QRRWYIQAACAT 160 (180)
Q Consensus 91 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~Sa~ 160 (180)
||++++ +.++....|+..+.. ..+++|+++++||+|+.++... .++....+...++ ..+++||+|||+
T Consensus 80 ~Ditd~~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDEYINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSCTTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCchHHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 333333333433322 2368999999999999864321 2333333333333 368899999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
+ .||+++|..+++.+.++
T Consensus 158 d-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTT
T ss_pred C-CcHHHHHHHHHHHHHhh
Confidence 8 59999999999887643
No 101
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=2.5e-29 Score=169.53 Aligned_cols=162 Identities=18% Similarity=0.177 Sum_probs=120.3
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcc-cccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
+..+.++|+++|++|||||||+++|++..+. .+.+ +.......+...+..+.+|||||++.+...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4578999999999999999999999987733 3333 334555667778889999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC--ccCCc--ceEEEEeeccCCCC
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH--SLRQR--RWYIQAACATSGQG 164 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~~ 164 (180)
+|+|++++...+.. ..+..+. ..++|+++|+||+|+.+. ..+++...+... ..... ..+++++||++|.|
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99999874322222 2222221 247899999999999764 333333333221 11222 27899999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
++++|+++.+.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887653
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.97 E-value=3.3e-29 Score=175.65 Aligned_cols=163 Identities=14% Similarity=0.121 Sum_probs=114.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccc--cccceeEEEEEEcCeEEEEEEcCCCC------CC---hhhHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNVSFTVWDVGGQD------KI---RPLWRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~D~~G~~------~~---~~~~~~~~ 81 (180)
.+.++|+|+|++|||||||+|+|++..+. ... .|.......+...+..+.+|||||+. .. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 57899999999999999999999988743 222 25556666667788999999999983 31 12234457
Q ss_pred cccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcc--eEEEEe
Q 030289 82 QNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRR--WYIQAA 157 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (180)
..+|++++|+|++++.+++ ....|+..+... ..+.|+++|+||+|+.+...................+ +++++|
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 7889999999999887654 334566555432 2478999999999997654332211111111112223 789999
Q ss_pred eccCCCChHHHHHHHHHHhhh
Q 030289 158 CATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
||++|.||+++|+++.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=6e-32 Score=186.51 Aligned_cols=164 Identities=20% Similarity=0.241 Sum_probs=123.6
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccccccceeEE-EE--EEcCeEEEEEEcCCCCCChhhHHhhccccCE
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE-TV--EYKNVSFTVWDVGGQDKIRPLWRHYFQNTHG 86 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 86 (180)
.+..+.+||+++|++|||||||+++|+++.+ ..+.+|++..+. .+ ....+.+.+|||||++.+...+..+++++|+
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 4457789999999999999999999997773 344455543322 22 2345677899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHh---------HHHhHhCCCccCCcce-EEE
Q 030289 87 LIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVS---------EVTDKLGLHSLRQRRW-YIQ 155 (180)
Q Consensus 87 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~ 155 (180)
+++|||++++.+++... .|+..+... .++.|+++|+||+|+.+..... .+........+...+. +++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 182 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 182 (204)
Confidence 99999999999998887 666655432 2378999999999997643211 1111222233344455 899
Q ss_pred EeeccCCCChHHHHHHHHHHh
Q 030289 156 AACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
+|||++|.|++++|+++.+.+
T Consensus 183 ~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 183 ECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999999998765
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.8e-28 Score=163.85 Aligned_cols=148 Identities=24% Similarity=0.288 Sum_probs=110.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh------hhHHhhcc--c
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR------PLWRHYFQ--N 83 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~ 83 (180)
+.++|+++|++|||||||+|+|.+.. .....| |.......+..++..+.+|||||+..+. .....+++ +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 46899999999999999999999866 333344 3445556677788999999999988774 34566665 8
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEeec
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+.... ..+++...+ +++++++||
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~SA 146 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPLSA 146 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBG
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHh--------CCCEEEEEc
Confidence 999999999987543 3446555533 368999999999975321 223333333 347999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030289 160 TSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~ 177 (180)
++|.|++++|+++.+.+.
T Consensus 147 ~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 147 AKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGTBSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998764
No 105
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.96 E-value=1.2e-28 Score=165.79 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=111.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhhcc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHYFQ 82 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 82 (180)
+.++|+++|++|||||||+|+|.+... ....+ |.+.....+..++..+.+|||||+..+... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 568999999999999999999998752 22222 444556677778889999999998764211 224578
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCC
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSG 162 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (180)
++|++++|+|++++.+++ ...|+..+... ...++|+++|+||+|+.++. .......+.++++|||++|
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~----------~~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGET----------LGMSEVNGHALIRLSARTG 150 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCC----------CEEEEETTEEEEECCTTTC
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcch----------hhhhhccCCceEEEeCCCC
Confidence 999999999999877765 34565555432 23478999999999985421 1112224578999999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.|++++|+++.+.+..
T Consensus 151 ~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999987654
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=3.5e-29 Score=171.31 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=109.6
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcCeEEEEEEcCC----------CCCChh
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKNVSFTVWDVGG----------QDKIRP 75 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G----------~~~~~~ 75 (180)
++....+.++|+++|++|||||||+|+|++.. ...+.++.+.. ...+.. +.++.+||||| ++.+..
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-NDELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred hhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CCcEEEEECCCCCccccCHHHHHHHHH
Confidence 44455688999999999999999999999876 33333433322 122222 34799999999 556666
Q ss_pred hHHhhcccc---CEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289 76 LWRHYFQNT---HGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW 152 (180)
Q Consensus 76 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
.+..+++.+ |++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+...................+.
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 777888777 9999999998876654432 1122221 4789999999999987554432222211111123456
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhh
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+++++||++|.|++++++++.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 8999999999999999999998875
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=4.5e-29 Score=181.93 Aligned_cols=162 Identities=18% Similarity=0.209 Sum_probs=123.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC--c--cccccccceeEEEEEE-cCeEEEEEEcCCCCCC-----hhhHHhhcccc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE--I--VTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----RPLWRHYFQNT 84 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~--~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 84 (180)
..+||+++|++|||||||+++++++. . ..+.+|++..+..+.. ++..+.+|||||++.+ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 46899999999999999999998873 2 2456799988888876 6789999999999887 67788899999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHh---HHHhHhCCCccCCc---ceEEEEe
Q 030289 85 HGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVS---EVTDKLGLHSLRQR---RWYIQAA 157 (180)
Q Consensus 85 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~ 157 (180)
|++++|||++++++++.+..|...+.... ..+++|+++|+||+|+.++.... +.........+... .+++++|
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 99999999999999988876644332211 13579999999999997621111 01111111222233 3689999
Q ss_pred eccCCCChHHHHHHHHHHhh
Q 030289 158 CATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (180)
||++ .++.++|..+++.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTC
T ss_pred eecC-ChHHHHHHHHHHHHc
Confidence 9999 899999999987654
No 108
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.96 E-value=1.7e-28 Score=162.89 Aligned_cols=147 Identities=20% Similarity=0.251 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCC-------ChhhHHhhccccC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDK-------IRPLWRHYFQNTH 85 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~ 85 (180)
+||+++|++|+|||||+++|.+... ....+ |.......+...+..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 5899999999999999999998762 22222 34456666777888999999999887 3455677889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSGQG 164 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 164 (180)
++++|+|++++.+. ...++..++.. .+.|+++|+||+|+.+.. ++.. ... ..++ +++++||++|.|
T Consensus 82 ~~i~v~d~~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~-----~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 82 VVLFAVDGRAELTQ--ADYEVAEYLRR---KGKPVILVATKVDDPKHE--LYLG-----PLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp EEEEEEESSSCCCH--HHHHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCG-----GGG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEEECCCcccH--hHHHHHHHHHh---cCCCEEEEEECcccccch--HhHH-----HHH-hCCCCCeEEEecccCCC
Confidence 99999999875332 22333333332 468999999999997641 1111 111 2334 689999999999
Q ss_pred hHHHHHHHHHHh
Q 030289 165 LYEGLDWLSSNV 176 (180)
Q Consensus 165 i~~~~~~l~~~~ 176 (180)
++++|+++.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998875
No 109
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=7e-29 Score=169.59 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=112.8
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEE-EEEEcCeEEEEEEcCC----------CCCChhhH
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE-TVEYKNVSFTVWDVGG----------QDKIRPLW 77 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G----------~~~~~~~~ 77 (180)
++..+...+||+++|++|||||||+|+|++.......++.+.... .+...+.++.+||||| ++.+...+
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 344557789999999999999999999998875444454443222 1222345788999999 55566667
Q ss_pred Hhhcccc---CEEEEEEECCChhhH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce
Q 030289 78 RHYFQNT---HGLIFVVDSNDRERI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW 152 (180)
Q Consensus 78 ~~~~~~~---~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
..+++.+ |++++|+|+++..+. ..+..|+.. .+.|+++|+||+|+.++.......+...........+
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 7777766 999999998765332 233334332 2689999999999986544333222221111111345
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
+++++||++|.|++++|+++.+.+.++
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~~~ 195 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLKEN 195 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC--
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhhcC
Confidence 899999999999999999999988653
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=3.2e-29 Score=170.70 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=113.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEEEcCeEEEEEEcCC-----------CCCChhhHHhhccc-
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVEYKNVSFTVWDVGG-----------QDKIRPLWRHYFQN- 83 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~- 83 (180)
+||+++|++|||||||+++|++.. ...+.|++......+... .+.+||||| ++.+...+..++++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999887 334455555555555544 789999999 45566677777777
Q ss_pred cCEEEEEEECCChhhHHHH-HHHHHH--------HhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcce
Q 030289 84 THGLIFVVDSNDRERIGEA-KDELHR--------MLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRW 152 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (180)
++++++|+++.+..++... ..|... +.......++|+++|+||+|+.+.. ..+++...++... .....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCC
Confidence 7777777777666777665 444431 2222223578999999999998753 2334444544421 11134
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
++++|||++|.|++++|+++.+.+.++
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 689999999999999999999988764
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=1.2e-27 Score=176.05 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=122.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE-EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV-ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
....+||+++|++|+|||||+++++++. ...+.+|++..+ ..+..++ +.+.+|||||++.+...+..+++++|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3567999999999999999999999877 344556665433 2344444 55669999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCC---------CccCCcce-EEEEe
Q 030289 89 FVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGL---------HSLRQRRW-YIQAA 157 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~ 157 (180)
+|||++++.+++.+. .|+..+... ..++|+++|+||+|+.+.....+....... ..+...+. ++++|
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999998887 566665443 247899999999998653211111111100 01122344 89999
Q ss_pred eccCCCChHHHHHHHHHHhhhc
Q 030289 158 CATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
||++|.|++++|+++.+.+.+.
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999988653
No 112
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.6e-29 Score=177.59 Aligned_cols=163 Identities=11% Similarity=0.156 Sum_probs=116.3
Q ss_pred hcccCccEEEEEcCC---------CCChHHHHHHhhc---CC-cccccccc-ceeE--E----------------EEEEc
Q 030289 11 LFARKEMRILMVGLD---------AAGKTTILYKLKL---GE-IVTTIPTI-GFNV--E----------------TVEYK 58 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~---------~~GKStli~~l~~---~~-~~~~~~t~-~~~~--~----------------~~~~~ 58 (180)
......+||+++|.+ |||||||+++|.+ .. ...+.+|+ +..+ . .++..
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345678999999999 9999999999998 33 33444443 2111 0 12335
Q ss_pred CeEEEEEE-----------------------cCCCCCChhhHHhhcc---------------------ccCEEEEEEECC
Q 030289 59 NVSFTVWD-----------------------VGGQDKIRPLWRHYFQ---------------------NTHGLIFVVDSN 94 (180)
Q Consensus 59 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~ 94 (180)
.+.+.+|| ++|++++...+..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 67899999 6677777777777777 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHH
Q 030289 95 DR--ERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWL 172 (180)
Q Consensus 95 ~~--~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 172 (180)
++ .+++.+..|+..+.......++|+++|+||+|+.+....++.... .. ...++++++|||++|.|++++|+++
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-~~---~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF-AL---SKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHH-HH---TSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHH-HH---hcCCCeEEEEECCCCCCHHHHHHHH
Confidence 98 999999999888765433467999999999999654333222211 10 1125689999999999999999999
Q ss_pred HHHhh
Q 030289 173 SSNVS 177 (180)
Q Consensus 173 ~~~~~ 177 (180)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98875
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.5e-27 Score=161.13 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=116.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccc--cceeEEEEEEcCeEEEEEEcCCCCCCh------hhHHhhcc-
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPT--IGFNVETVEYKNVSFTVWDVGGQDKIR------PLWRHYFQ- 82 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t--~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 82 (180)
+++.++|+++|++|||||||+++|++.. .....++ .......+...+..+.+|||||+..+. ..+..++.
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 4678999999999999999999999876 3344454 345556677788999999999998874 44666665
Q ss_pred -ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEe
Q 030289 83 -NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 83 -~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.... ...++.+.+ +++++++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--------~~~~~~~ 148 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKIL--------GVKVVPL 148 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEEC
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHh--------CCCeEEE
Confidence 4999999999874 4555667666643 478999999999975422 233333333 3479999
Q ss_pred eccCCCChHHHHHHHHHHhhhc
Q 030289 158 CATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
||+++.|++++|+++.+.+.++
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC
T ss_pred EecCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=2e-27 Score=163.28 Aligned_cols=159 Identities=16% Similarity=0.323 Sum_probs=121.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...++|+++|++|||||||+++|++.. ...+.+|.+.. ...+.+.+ +.+.+||++|++.++..+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 346899999999999999999999887 34455666544 44565654 57889999999988888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+.. ..++... .+...++.++++|++++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~-----l~~~~~~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARA-----FAEKNNLSFIETSALDSTNVE 156 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-----HHHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHH-----HHHHcCCeEEEEeCCCCCCHH
Confidence 999999998888888887765432 23468999999999996532 2222221 122345689999999999999
Q ss_pred HHHHHHHHHhhh
Q 030289 167 EGLDWLSSNVSA 178 (180)
Q Consensus 167 ~~~~~l~~~~~~ 178 (180)
++++++.+.+.+
T Consensus 157 ~l~~~l~~~~~~ 168 (199)
T 2f9l_A 157 EAFKNILTEIYR 168 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.1e-26 Score=167.87 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=119.9
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcc--ccc--cccceeEEEEEEc-CeEEEEEEcCCCCCCh----------hh
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYK-NVSFTVWDVGGQDKIR----------PL 76 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~--~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~ 76 (180)
.+...-.|+++|.+|||||||+|+|++.... ... .|.......+... +.++.+|||||..... ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 4567789999999999999999999988733 222 2444555556667 8999999999986654 56
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC-CCCCHhHHHhHhCCCccCCcceEEE
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP-NAMSVSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
...+++.+|++++|+|+++..+.+....|+..+.. .+.|+++|+||+|+. +.....+....+.... ....+++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~--~~~~~i~ 159 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH--PELTEIV 159 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC--TTCCCEE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc--cCCCeEE
Confidence 77788999999999999988777776666666543 468999999999997 4333333222221110 0124699
Q ss_pred EeeccCCCChHHHHHHHHHHhhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
++||++|.|++++++++.+.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999988754
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2.6e-26 Score=163.47 Aligned_cols=150 Identities=19% Similarity=0.256 Sum_probs=112.9
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh------hHHhhc--
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP------LWRHYF-- 81 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-- 81 (180)
+++.++|+++|++|||||||+|+|++.. .....| |+......+...+..+.+|||||...+.. ....++
T Consensus 2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp -CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 3567999999999999999999999877 333334 44455556677789999999999887653 335555
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceEEEEe
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
.++|++++|+|+++.++. ..|+..+.. .++|+++|+||+|+... .+..++...+ +++++++
T Consensus 82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l--------g~~vi~~ 146 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL--------GIPVVFT 146 (258)
T ss_dssp SCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH--------CSCEEEC
T ss_pred cCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc--------CCCEEEE
Confidence 489999999999886543 345555543 37899999999997542 1233444443 3579999
Q ss_pred eccCCCChHHHHHHHHHHhh
Q 030289 158 CATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~ 177 (180)
||++|.|++++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999998764
No 117
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.94 E-value=1.9e-26 Score=157.48 Aligned_cols=157 Identities=15% Similarity=0.327 Sum_probs=121.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeE--EEEEEcC--eEEEEEEcCCCCCChhhHHhhccccCEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWRHYFQNTHGLI 88 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 88 (180)
...++|+++|++|||||||++++.+.. ...+.+|++..+ ..+.+.+ +.+.+||++|.+++...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 346899999999999999999999887 445667777544 4555555 45677999999999888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCccCCcceEEEEeeccCCCChH
Q 030289 89 FVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLY 166 (180)
Q Consensus 89 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 166 (180)
+|+|+.+..+++.+..|+..+... .....|+++++||+|+.+.. ..++.. .+ +...++.++.+|++++.|++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l----~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AF----AEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHH-HH----HHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHH-HH----HHHcCCEEEEEeCCCCCCHH
Confidence 999999998888888787665432 23468999999999986532 222221 11 22345689999999999999
Q ss_pred HHHHHHHHHh
Q 030289 167 EGLDWLSSNV 176 (180)
Q Consensus 167 ~~~~~l~~~~ 176 (180)
++++.+.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 118
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=2.4e-27 Score=165.47 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=111.2
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCC---cccccc--ccceeEEEEE-EcCeEEEEEEcCCCCC----------
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGE---IVTTIP--TIGFNVETVE-YKNVSFTVWDVGGQDK---------- 72 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~---~~~~~~--t~~~~~~~~~-~~~~~~~i~D~~G~~~---------- 72 (180)
.+..+...++|+++|++|||||||+|+|++.. .....+ |.......+. ..+..+.+|||||...
T Consensus 22 ~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 22 RDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp GGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 44555678999999999999999999999876 222222 3333333443 3468899999999533
Q ss_pred ChhhHHhhccc---cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccC-
Q 030289 73 IRPLWRHYFQN---THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLR- 148 (180)
Q Consensus 73 ~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~- 148 (180)
+......+++. +|++++|+|+++..+ .....++..+ .. .+.|+++|+||+|+.+.....+....+......
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 24556666666 788999999986433 1222333333 22 468999999999998744322222111111011
Q ss_pred -----CcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 149 -----QRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 149 -----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
....+++++||++|.|+++++++|.+.+...
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 2457899999999999999999999987643
No 119
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=4.9e-26 Score=165.22 Aligned_cols=156 Identities=16% Similarity=0.096 Sum_probs=112.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc--cccc--ccceeEEEEEEcCeEEEEEEcCCCCC--------ChhhHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNVSFTVWDVGGQDK--------IRPLWRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 81 (180)
.+..+|+++|.+|||||||+|+|++.... +..| |.......+...+.++.+|||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 34567999999999999999999988732 2222 33333344556789999999999876 345567788
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
+.+|++++|+|++++.+. ...|+...+... ..+.|+++|+||+|+.+... ..+....+ ....+++++||+
T Consensus 85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~ 155 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSAL 155 (301)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTT
T ss_pred hcCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCC
Confidence 999999999999876432 245554433332 14789999999999976433 33333333 112479999999
Q ss_pred CCCChHHHHHHHHHHhhh
Q 030289 161 SGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~ 178 (180)
+|.|++++++.+.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 156 DERQVAELKADLLALMPE 173 (301)
T ss_dssp CHHHHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999887643
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=1.6e-26 Score=165.98 Aligned_cols=150 Identities=20% Similarity=0.197 Sum_probs=111.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh----------hhHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR----------PLWRHY 80 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 80 (180)
+++++|+++|++|||||||+|+|++.. .....+ |++.....+...+..+.+|||||...+. .....+
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 357999999999999999999999877 333334 4455566677778899999999987765 223334
Q ss_pred c--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEE
Q 030289 81 F--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYI 154 (180)
Q Consensus 81 ~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~ 154 (180)
+ +++|++++|+|+++.++...+..++.. .++|+++|+||+|+.+.. ..+.+...+ ++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~~ 145 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLLE-------LGIPCIVALNMLDIAEKQNIRIEIDALSARL--------GCPV 145 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHHH-------HTCCEEEEEECHHHHHHTTEEECHHHHHHHH--------TSCE
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHHh-------cCCCEEEEEECccchhhhhHHHHHHHHHHhc--------CCCE
Confidence 3 689999999999876544443333332 268999999999986432 233344333 3579
Q ss_pred EEeeccCCCChHHHHHHHHHHhhh
Q 030289 155 QAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 155 ~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+++||++|.|++++++++.+.+.+
T Consensus 146 i~~SA~~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 146 IPLVSTRGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp EECCCGGGHHHHHHHHHHHTCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999887653
No 121
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.2e-26 Score=180.58 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=111.9
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccccccccceeEEEEE--------E----cCeEEEEEEcCCCCCChhhHH
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFNVETVE--------Y----KNVSFTVWDVGGQDKIRPLWR 78 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~~~~~~--------~----~~~~~~i~D~~G~~~~~~~~~ 78 (180)
.+.+.+||+++|.+|||||||+|+|++.. ...+.+|++..+.+.. . .+..+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 35778999999999999999999999887 4455678887776542 1 258999999999999999999
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEE
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
.+++.+|++++|+|+++.+ ....|+..+... .++.|+++|+||+|+.+... .++.... +...+.++++
T Consensus 117 ~~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~ 186 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDS---NKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINER-----FPAIENRFHR 186 (535)
T ss_dssp HHHHSSEEEEEEECGGGGG---GHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHH-----CGGGTTCEEE
T ss_pred HHccCCcEEEEEEeCCCch---hHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHH-----HHhcCCceEE
Confidence 9999999999999997654 445566555443 24689999999999976443 3333322 2233457999
Q ss_pred eeccCCCChHHHHHHHHHHhhhc
Q 030289 157 ACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
+||++|.|++++++.+.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999987653
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=3.6e-26 Score=162.54 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=109.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh----------hHHhhc--
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP----------LWRHYF-- 81 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~-- 81 (180)
.+|+++|++|||||||+|+|.+.. .....| |++.....+...+..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 489999999999999999999876 333334 44466667777889999999999877653 466677
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC----CHhHHHhHhCCCccCCcceEEEEe
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM----SVSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
.++|++++|+|+++.++...+.. .+.. .++|+++|+||+|+.+.. ....+...+ +++++++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~ 146 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------GCSVIPI 146 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------CSCEEEC
T ss_pred CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------CCCEEEE
Confidence 88999999999987654443333 3322 378999999999975432 233344443 3579999
Q ss_pred eccCCCChHHHHHHHHHH
Q 030289 158 CATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~ 175 (180)
||++|.|++++++++.+.
T Consensus 147 SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 147 QAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp BGGGTBSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 999999999999999876
No 123
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=1.7e-26 Score=175.77 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=114.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCC----------CCChhhHH-h
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQ----------DKIRPLWR-H 79 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~ 79 (180)
..+||+++|++|||||||+|+|++... ....+ |.+.....+..++..+.+|||||+ +.|..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 568999999999999999999998773 33333 444555567778889999999997 33443333 5
Q ss_pred hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEEe
Q 030289 80 YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQAA 157 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (180)
+++++|++++|+|++++.+.+.. .|+..+. ..++|+++|+||+|+.+... .+++.+.+........+++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 328 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM 328 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence 78899999999999987776554 4554443 25789999999999976543 23333332222222345689999
Q ss_pred eccCCCChHHHHHHHHHHhhh
Q 030289 158 CATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 158 Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
||++|.|++++|+.+.+.+.+
T Consensus 329 SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 329 SALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CTTTCTTGGGHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887754
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=6.1e-26 Score=162.49 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=108.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCCh------hhHHhhcc--c
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR------PLWRHYFQ--N 83 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~ 83 (180)
..++|+++|++|||||||+|+|++.. .....| |.......+.. +..+.+|||||+..+. .....++. +
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 36799999999999999999999865 344344 33333333433 6789999999998775 45666775 5
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC----CCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA----MSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+|++++|+|+++.++ ...|...+.. .++|+++|+||+|+... .....+...+ +++++++||
T Consensus 81 ~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l--------g~~vi~~SA 145 (272)
T 3b1v_A 81 ADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL--------GVPVVATSA 145 (272)
T ss_dssp CSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH--------TSCEEECBT
T ss_pred CCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc--------CCCEEEEEc
Confidence 999999999987544 3445555433 47899999999997532 2233444443 357999999
Q ss_pred cCCCChHHHHHHHHHHhh
Q 030289 160 TSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~ 177 (180)
++|.|++++|+++.+.+.
T Consensus 146 ~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 146 LKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTBSHHHHHHHHHHSCT
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999999999988664
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=4.5e-25 Score=158.35 Aligned_cols=151 Identities=21% Similarity=0.238 Sum_probs=113.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh------hHHhhc--c
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP------LWRHYF--Q 82 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~ 82 (180)
++.++|+++|++|||||||+|+|++... ....+ |.+.....+...+..+.+|||||...+.. ....++ .
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 3578999999999999999999998773 33334 44455566777888999999999887755 566666 6
Q ss_pred ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC----CCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 83 NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN----AMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 83 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
++|++++|+|+++.+ ....++..+... ...|+++|+||+|+.+ ......+.+.++ ++++++|
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~S 146 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTN 146 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECB
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEE
Confidence 899999999998653 334444444432 2389999999999643 123444444443 5799999
Q ss_pred ccCCCChHHHHHHHHHHhhh
Q 030289 159 ATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~~ 178 (180)
|++|.|++++++.+.+.+.+
T Consensus 147 a~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999988754
No 126
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=2.1e-27 Score=165.21 Aligned_cols=118 Identities=25% Similarity=0.339 Sum_probs=96.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc----c
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN----T 84 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~ 84 (180)
..+.++|+++|++|+|||||+++|.+..+.. +.++++..+ ....+.+|||||++.++..+..+++. +
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 83 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 83 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHhccccC
Confidence 4678999999999999999999999877432 334443322 66789999999999998888888887 8
Q ss_pred CEEEEEEECC-ChhhHHHHHHHHHHHhccc---ccCCCeEEEEEecCCCCCCCCH
Q 030289 85 HGLIFVVDSN-DRERIGEAKDELHRMLSED---ELREAVLLVFANKQDLPNAMSV 135 (180)
Q Consensus 85 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~~iiiv~nK~D~~~~~~~ 135 (180)
|++++|+|++ +++++.....|+..+.... ...++|+++|+||+|+.+....
T Consensus 84 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 84 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp EEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 9999999999 8889999999988886542 1257999999999999876553
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=1.5e-25 Score=171.29 Aligned_cols=151 Identities=20% Similarity=0.211 Sum_probs=99.5
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHY 80 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 80 (180)
.+..++|+++|++|||||||+|+|++.. .....+ |.+.....+...+..+.+|||||...+... ...+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3567999999999999999999999875 334333 455666778889999999999998766533 3446
Q ss_pred ccccCEEEEEEECCChhhHH---HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH--HHhHhCCCccCCcceEEE
Q 030289 81 FQNTHGLIFVVDSNDRERIG---EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE--VTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (180)
++++|++++|+|++++.+.+ ....|+..+ .+.|+++|+||+|+.+....+. +... ...+++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i 375 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVI 375 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEE
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceE
Confidence 78999999999999877654 333343332 2689999999999987554322 1111 013689
Q ss_pred EeeccCCCChHHHHHHHHHHhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
++||++|.|++++++++.+.+.
T Consensus 376 ~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 376 GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998875
No 128
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.93 E-value=5.2e-25 Score=160.45 Aligned_cols=135 Identities=22% Similarity=0.398 Sum_probs=111.0
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC----------ChhhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN----------DRERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 114 (180)
.||+|+....+..+++.+++||++|++.++..|..++++++++++|+|++ +..+++....|+..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 45788888889999999999999999999999999999999999999654 67889999999999988777
Q ss_pred cCCCeEEEEEecCCCCCC------------------CCHhHHHhH-----hCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 115 LREAVLLVFANKQDLPNA------------------MSVSEVTDK-----LGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~~------------------~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
..++|+++++||+|+..+ .+.++..+. ........+++.+++|||+++.||+++|..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 788999999999997541 233332221 222233456789999999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988764
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.93 E-value=4.2e-26 Score=171.82 Aligned_cols=155 Identities=19% Similarity=0.148 Sum_probs=111.3
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCcc--cc--ccccceeEEEEEEcCe-EEEEEEcCCCCCChhh-------HH
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIV--TT--IPTIGFNVETVEYKNV-SFTVWDVGGQDKIRPL-------WR 78 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~--~~--~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~ 78 (180)
......++|+|+|+.|+|||||+|+|++.... .. ..|.+.....+...+. .+.+|||||+..+... +.
T Consensus 29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp ---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 34567899999999999999999999987732 22 2356666777777655 9999999998766433 56
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEee
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAAC 158 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (180)
.++.++|++++|+|+... +....|+..+.. .++|+++|+||+|+...... +....+. ...+++++++|
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vS 176 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVS 176 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCS
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEE
Confidence 688899999999998333 233455554433 27899999999999876544 2233322 23456899999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030289 159 ATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~ 177 (180)
|++|.|++++++++.+.+.
T Consensus 177 Aktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp SCCTTSTTTHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999874
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.93 E-value=1.9e-24 Score=160.67 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-c--cccccceeEEEEEEcCeEEEEEEcCCCCCCh---------hhHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR---------PLWRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 81 (180)
...++|+++|++|||||||+|+|.+.... . ...|.+.....+...+..+.+|||||..... .....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 46789999999999999999999987722 1 2345666666677778899999999975431 2233445
Q ss_pred cccCEEEEEEECCChh--hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeec
Q 030289 82 QNTHGLIFVVDSNDRE--RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
..+|++++|+|+++.. +++....|+..+.... .+.|+++|+||+|+......++..... ...+++++++||
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA 317 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISA 317 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeC
Confidence 5799999999998876 6777778877775432 278999999999997643333222211 123457999999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
++|+|++++++++.+.+..
T Consensus 318 ~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.93 E-value=4.3e-25 Score=168.92 Aligned_cols=151 Identities=24% Similarity=0.347 Sum_probs=115.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCC-CCh--------hhHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQD-KIR--------PLWRHY 80 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~~--------~~~~~~ 80 (180)
+..++|+++|.+|||||||+|+|++.+ .....+ |.++....+..++..+.+|||||.. .+. .....+
T Consensus 241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 345899999999999999999999875 333333 5567777888899999999999987 543 234568
Q ss_pred ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeecc
Q 030289 81 FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
++++|++++|+|++++.+.+... .+. .+ .+.|+++|+||+|+.+....+++..... .+.+++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~-~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILE-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHH-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHH-Hh-----cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECC
Confidence 89999999999998877665432 222 22 3679999999999976544444443322 12468999999
Q ss_pred CCCChHHHHHHHHHHhh
Q 030289 161 SGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~ 177 (180)
+|.|++++++++.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998754
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.93 E-value=1.5e-25 Score=165.45 Aligned_cols=135 Identities=23% Similarity=0.428 Sum_probs=109.6
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 114 (180)
.+|+|+....+..+++.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.....
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 357778888888899999999999999999999999999999999999998 4679999999999988766
Q ss_pred cCCCeEEEEEecCCCCC-----------------CCCHhHHHhHh-----CCCcc-CCcceEEEEeeccCCCChHHHHHH
Q 030289 115 LREAVLLVFANKQDLPN-----------------AMSVSEVTDKL-----GLHSL-RQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~-----------------~~~~~~~~~~~-----~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
..++|+++++||+|+.. +.+.++..... .+... ...++.+++|||+++.||+++|.+
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 67899999999999852 12333332221 11111 245789999999999999999999
Q ss_pred HHHHhhhc
Q 030289 172 LSSNVSAK 179 (180)
Q Consensus 172 l~~~~~~~ 179 (180)
+.+.+.++
T Consensus 338 v~~~i~~~ 345 (353)
T 1cip_A 338 VTDVIIKN 345 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=1.7e-25 Score=171.12 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=112.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCC----------CCCChhhHH-
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGG----------QDKIRPLWR- 78 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~- 78 (180)
...+||+++|.+|+|||||+|+|++.. .....+ |.+.....+...+..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 457999999999999999999999765 333333 44445566777888999999999 566665544
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEE
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
.+++++|++++|+|+++.-. ....++...+.. .++|+++|+||+|+.+... .++..+...........+++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~--~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGII--EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCC--HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcC--HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 47889999999999986433 233333333222 5789999999999976432 2333332221111122468999
Q ss_pred eeccCCCChHHHHHHHHHHhhh
Q 030289 157 ACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+||++|.|++++|+.+.+.+.+
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=3.1e-25 Score=163.21 Aligned_cols=157 Identities=22% Similarity=0.284 Sum_probs=117.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEcC-eEEEEEEcCCC----CCChhhHHhhcc---ccC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYKN-VSFTVWDVGGQ----DKIRPLWRHYFQ---NTH 85 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~----~~~~~~~~~~~~---~~~ 85 (180)
.+|+++|.+|||||||+|+|++.+. ..+ ..|.......+...+ ..+.+|||||. ..+..+...+++ +++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 4799999999999999999998762 222 246667777777765 89999999993 344444444544 599
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeecc
Q 030289 86 GLIFVVDSND---RERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACAT 160 (180)
Q Consensus 86 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (180)
++++|+|+++ +++++....|...+.... ...++|+++|+||+|+..... .+++.+.+.. ..+++++||+
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~ 312 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAV 312 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECC
Confidence 9999999998 788888888887776542 135789999999999976321 2233333321 1468999999
Q ss_pred CCCChHHHHHHHHHHhhhc
Q 030289 161 SGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 161 ~~~~i~~~~~~l~~~~~~~ 179 (180)
++.|+++++++|.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENT 331 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSC
T ss_pred CCcCHHHHHHHHHHHHhhC
Confidence 9999999999999988653
No 135
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.92 E-value=8.5e-25 Score=161.92 Aligned_cols=132 Identities=24% Similarity=0.393 Sum_probs=100.2
Q ss_pred ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhcccccC
Q 030289 47 TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDELR 116 (180)
Q Consensus 47 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 116 (180)
|+|+....+..+++.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 5677777788899999999999999999999999999999999999998 679999999999998876667
Q ss_pred CCeEEEEEecCCCCC------------------CCCHhHHHhHh-----CCCccC-CcceEEEEeeccCCCChHHHHHHH
Q 030289 117 EAVLLVFANKQDLPN------------------AMSVSEVTDKL-----GLHSLR-QRRWYIQAACATSGQGLYEGLDWL 172 (180)
Q Consensus 117 ~~~iiiv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l 172 (180)
++|+++++||+|+.. +.+.++..... .+.... ..++.+++|||+++.||+++|.++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 899999999999852 13334333221 221111 456789999999999999999999
Q ss_pred HHHhhh
Q 030289 173 SSNVSA 178 (180)
Q Consensus 173 ~~~~~~ 178 (180)
.+.+.+
T Consensus 348 ~~~i~~ 353 (362)
T 1zcb_A 348 KDTILH 353 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 136
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.92 E-value=1.1e-24 Score=164.21 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=113.6
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCccccc----cccc--------------e-----eEEEEEEcCeEEEEEEcC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIVTTI----PTIG--------------F-----NVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~----~t~~--------------~-----~~~~~~~~~~~~~i~D~~ 68 (180)
..++.+||+++|++++|||||+|+|++....... .+.+ . ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3567899999999999999999999874311100 0000 0 000001122689999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH----HHhHhCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE----VTDKLGL 144 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~----~~~~~~~ 144 (180)
|++.|...+..++..+|++++|+|+++..+......++...... ...|+++|+||+|+.+.....+ +.+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876566666666544322 2358999999999986432222 2222211
Q ss_pred CccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 145 HSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 145 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
. ....++++++||++|.|+++++++|.+.+.
T Consensus 161 ~--~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 T--WAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp S--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred h--CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1 123568999999999999999999998764
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=2.3e-24 Score=164.16 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=104.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCC---------hhhHHhhccc
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKI---------RPLWRHYFQN 83 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~~ 83 (180)
.+|+++|.+|||||||+|+|++.+ .....| |.+..+..+...+..+.+|||||.+.. ...+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 479999999999999999999876 233333 555667788888999999999997642 3456778999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCC
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSG 162 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (180)
+|++++|+|+.+.-+. ...++..++.. .++|+++|+||+|+.... ..+....+ ...+. +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~--~d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~-----~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITK--EDESLADFLRK---STVDTILVANKAENLREF-EREVKPEL-----YSLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCH--HHHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHH-----GGGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCH--HHHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHH-----HhcCCCCEEEEeccCC
Confidence 9999999999765332 22333333332 368999999999985321 11110111 12233 5799999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.|++++++++.+.+.+
T Consensus 151 ~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 151 INLDTMLETIIKKLEE 166 (439)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccc
Confidence 9999999999988753
No 138
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.92 E-value=1.4e-24 Score=158.66 Aligned_cols=134 Identities=22% Similarity=0.338 Sum_probs=108.1
Q ss_pred ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC----------ChhhHHHHHHHHHHHhcccc
Q 030289 45 IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN----------DRERIGEAKDELHRMLSEDE 114 (180)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~ 114 (180)
.+|+|+....+..+++.+++||++|++.++..|..++++++++|+|+|++ +..++.....|+..++....
T Consensus 146 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 146 TKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp CCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred cceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45788888889999999999999999999999999999999999999998 67899999999999988777
Q ss_pred cCCCeEEEEEecCCCCCC-----------------CCHhHHH----hHh-------CCCccCC-----------cceEEE
Q 030289 115 LREAVLLVFANKQDLPNA-----------------MSVSEVT----DKL-------GLHSLRQ-----------RRWYIQ 155 (180)
Q Consensus 115 ~~~~~iiiv~nK~D~~~~-----------------~~~~~~~----~~~-------~~~~~~~-----------~~~~~~ 155 (180)
..++|+++++||+|+..+ .+.++.. ..+ ....... +.+.++
T Consensus 226 ~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h 305 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTN 305 (340)
T ss_dssp GTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEE
T ss_pred cCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEE
Confidence 788999999999997541 1222221 111 1111222 468999
Q ss_pred EeeccCCCChHHHHHHHHHHhhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+|||++..||+.+|..+.+.+.+
T Consensus 306 ~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 306 PTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 139
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=9e-25 Score=166.23 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCcccccc----ccceeEEEEEEcCeEEEEEEcCCCC--------CChhhHHhhccc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNVSFTVWDVGGQD--------KIRPLWRHYFQN 83 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~ 83 (180)
..+|+++|.+|||||||+|+|.+.......+ |.+..+..+...+..+.+|||||.. .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 4799999999999999999999876332222 3344455555577899999999986 455667888999
Q ss_pred cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcce-EEEEeeccCC
Q 030289 84 THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRW-YIQAACATSG 162 (180)
Q Consensus 84 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (180)
+|++++|+|+.+..+. ...++..++.. .++|+++|+||+|+.+... + ... +...+. .++++||++|
T Consensus 83 ad~il~vvD~~~~~~~--~d~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~-----~~~-~~~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--N-----IYD-FYSLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCH--HHHHHHHHHTT---CCSCEEEEEECCCC-------C-----CCS-SGGGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCH--HHHHHHHHHHH---cCCCEEEEEECccCccchh--h-----HHH-HHHcCCCCeEEEeCcCC
Confidence 9999999999876543 23455555443 5789999999999875321 0 011 112233 6899999999
Q ss_pred CChHHHHHHHHHHhhh
Q 030289 163 QGLYEGLDWLSSNVSA 178 (180)
Q Consensus 163 ~~i~~~~~~l~~~~~~ 178 (180)
.|++++++++.+.+.+
T Consensus 150 ~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988763
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.91 E-value=1.5e-24 Score=165.21 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=103.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhh--------HHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPL--------WRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 81 (180)
+..++|+++|++|||||||+|+|++.. .....+ |.++....+..++..+.+|||||...+... ...++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 567899999999999999999999764 233333 344555667778999999999997655433 33467
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATS 161 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (180)
+.+|++++|+|++++.+... ..++..+ ...|+++|+||+|+.+...... ...+ ....+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~~------~~~~-~~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLITS------LEYP-ENITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGSTT------CCCC-TTCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhHH------HHHh-ccCCcEEEEECCC
Confidence 88999999999987655433 3444433 2369999999999976432220 1111 1345799999999
Q ss_pred CCChHHHHHHHHHHhhh
Q 030289 162 GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 162 ~~~i~~~~~~l~~~~~~ 178 (180)
|.|++++++++.+.+..
T Consensus 368 g~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 368 KQGIDSLETAILEIVQT 384 (462)
T ss_dssp TBSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 141
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-24 Score=148.58 Aligned_cols=125 Identities=27% Similarity=0.379 Sum_probs=96.2
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCccc----cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccc----c
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQN----T 84 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~ 84 (180)
..+.++|+++|++|||||||+++|++..... ..++....+ ....+.+|||||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-----CCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-----cCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4678999999999999999999999876332 223333222 56789999999999887777777776 8
Q ss_pred CEEEEEEECC-ChhhHHHHHHHHHHHhcccc---cCCCeEEEEEecCCCCCCCCHhHHHhHh
Q 030289 85 HGLIFVVDSN-DRERIGEAKDELHRMLSEDE---LREAVLLVFANKQDLPNAMSVSEVTDKL 142 (180)
Q Consensus 85 ~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~---~~~~~iiiv~nK~D~~~~~~~~~~~~~~ 142 (180)
|++++|+|++ +.+++.....|+..+..... ..+.|+++|+||+|+.+....+++.+.+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 9999999999 88999999888888765431 2579999999999998877766655443
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.91 E-value=5.5e-25 Score=162.39 Aligned_cols=121 Identities=18% Similarity=0.333 Sum_probs=93.0
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECC----------ChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSN----------DRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~ 127 (180)
+.+.+++|||+|++.++..|..++++++++++|||++ +..+++....|+..+.......++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4588999999999999999999999999999999998 788999999999999877656789999999999
Q ss_pred CCCCCC----C-------------------HhHHHhHhCCC-----------ccCCcceEEEEeeccCCCChHHHHHHHH
Q 030289 128 DLPNAM----S-------------------VSEVTDKLGLH-----------SLRQRRWYIQAACATSGQGLYEGLDWLS 173 (180)
Q Consensus 128 D~~~~~----~-------------------~~~~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 173 (180)
|+.++. . .++........ ......+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 974311 0 11111110000 0012356789999999999999999999
Q ss_pred HHhhh
Q 030289 174 SNVSA 178 (180)
Q Consensus 174 ~~~~~ 178 (180)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.1e-23 Score=160.46 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=108.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChh-----------h-HH
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRP-----------L-WR 78 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~-~~ 78 (180)
..++|+++|++|||||||+|+|++... ....+ |.+.....+..++..+.+|||||..+... . ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 458999999999999999999998763 33333 44455567777888999999999743221 1 23
Q ss_pred hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--HhHHHhHhCCCccCCcceEEEE
Q 030289 79 HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--VSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 79 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
.+++.+|++++++|+++..+.+. .++...+. ..++|+++|+||+|+.+... .+++...+..........++++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLME---RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF 333 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHH---HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEE
Confidence 56778999999999987554433 22333322 25789999999999876432 3333332222222223468999
Q ss_pred eeccCCCChHHHHHHHHHHhhh
Q 030289 157 ACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+||++|.|++++|+.+.+.+.+
T Consensus 334 ~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 334 TSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 144
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.91 E-value=1.4e-23 Score=158.52 Aligned_cols=160 Identities=17% Similarity=0.116 Sum_probs=103.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC----cccccc--ccceeEEEEEEc-----------------------CeEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP--TIGFNVETVEYK-----------------------NVSFT 63 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~----~~~~~~--t~~~~~~~~~~~-----------------------~~~~~ 63 (180)
....+||+++|+.++|||||+++|++.. ..+..+ |++..+...... ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 3567999999999999999999998543 122223 666554433321 26899
Q ss_pred EEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHH
Q 030289 64 VWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVT 139 (180)
Q Consensus 64 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~ 139 (180)
+|||||++.|...+...+..+|++++|+|+++..........+..+. . ....|+++++||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~--l~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-I--LGIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-H--TTCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-H--cCCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 99999999888888888888999999999985421122222222221 1 12357999999999976432 23333
Q ss_pred hHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 140 DKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+.+... ...+++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGT--IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTS--TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 332211 123568999999999999999999998664
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=2.9e-24 Score=164.92 Aligned_cols=161 Identities=15% Similarity=0.120 Sum_probs=111.4
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC----c----cc--cccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhc
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE----I----VT--TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYF 81 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~----~----~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 81 (180)
..+++++|+++|+.++|||||+++|.+.. . .+ ...|++..+..+...+..+.+|||||++.|...+..++
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHH
Confidence 34678999999999999999999998765 1 11 12466666677777889999999999999988888999
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCc--c-CCcceEEEEee
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHS--L-RQRRWYIQAAC 158 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~S 158 (180)
..+|++++|+|+++... .....++... .. .++|.++++||+|+.++...++..+++.... . .-...+++++|
T Consensus 95 ~~aD~~ilVvda~~g~~-~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp TSCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred hhCCEEEEEEecCCCcc-HHHHHHHHHH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 99999999999986321 1112222211 21 3678899999999986322222222111000 0 01156899999
Q ss_pred ccCCCChHHHHHHHHHHhh
Q 030289 159 ATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 159 a~~~~~i~~~~~~l~~~~~ 177 (180)
|++|+|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998764
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=9.8e-25 Score=168.30 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcc-cccc--ccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
+.++|+++|++++|||||+++|.+.... ...+ |..+....+.. .+..+.+|||||++.|...+..+++.+|++++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 5789999999999999999999876522 2222 33333334433 456899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC--CHhHHHhHhCCCc-cCCcceEEEEeeccCCCChHH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM--SVSEVTDKLGLHS-LRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
+|+++....+.... +.... ..++|+++++||+|+.+.. ...+......... ......+++++||++|.|+++
T Consensus 83 VDa~dg~~~qt~e~-l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 83 VAADDGVMKQTVES-IQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp CBSSSCCCHHHHHH-HHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EECCCCccHHHHHH-HHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 99987554333332 23222 2468999999999987532 1111122222111 112357899999999999999
Q ss_pred HHHHHHHHhh
Q 030289 168 GLDWLSSNVS 177 (180)
Q Consensus 168 ~~~~l~~~~~ 177 (180)
+++++...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999988754
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=4.4e-23 Score=147.14 Aligned_cols=162 Identities=16% Similarity=0.157 Sum_probs=106.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-cc-ccc---cccceeEEEEEEcCeEEEEEEcCCCCCCh-----------h
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IV-TTI---PTIGFNVETVEYKNVSFTVWDVGGQDKIR-----------P 75 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~-~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~ 75 (180)
...+.++|+|+|++|||||||+|+|++.. .. ... .|.......+...+..+.+|||||...+. .
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 45678999999999999999999999876 32 222 34455666777788999999999965442 1
Q ss_pred hHHhhccccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEe-cCCCCCCCCHhH------------HHhH
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFAN-KQDLPNAMSVSE------------VTDK 141 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~n-K~D~~~~~~~~~------------~~~~ 141 (180)
....+++.+|++++|+|+++.... .....++...... ....|.++++| |+|+... .... +...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 233467889999999999862222 2233444444322 11345566665 9999753 3333 2222
Q ss_pred hCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 142 LGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 142 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
.+.... .+..+++||+++.|++++|..+.+.+...
T Consensus 175 ~~~~~~---~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 175 CGGRIC---AFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTTCEE---ECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCeEE---EecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 221110 01118899999999999999999987653
No 148
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.90 E-value=2e-23 Score=155.33 Aligned_cols=146 Identities=6% Similarity=0.033 Sum_probs=110.8
Q ss_pred EEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh
Q 030289 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
+|+++|++++|||||+++|+ ....|++..+..+...+..+.+|||||+++|.......++.+|++++|+| + ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 99999999999999999998 45567787777787788899999999999998888888899999999999 4 33
Q ss_pred hHHHHHHHHHHHhcccccCCCeE-EEEEe-cCCCCCCCCHh----HHHhHhCCCccCCcceEEEE--eeccC---CCChH
Q 030289 98 RIGEAKDELHRMLSEDELREAVL-LVFAN-KQDLPNAMSVS----EVTDKLGLHSLRQRRWYIQA--ACATS---GQGLY 166 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i-iiv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~ 166 (180)
.......++..... .++|. ++++| |+|+ ++...+ ++.+.+... ....+++++ +||++ +.|++
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~ 168 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVD 168 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHH
Confidence 34445555444322 35666 88999 9999 532222 222222111 113468999 99999 99999
Q ss_pred HHHHHHHHHhh
Q 030289 167 EGLDWLSSNVS 177 (180)
Q Consensus 167 ~~~~~l~~~~~ 177 (180)
++++.|.+.+.
T Consensus 169 ~L~~~l~~~~~ 179 (370)
T 2elf_A 169 ELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99999988764
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.90 E-value=1.2e-23 Score=159.00 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=110.7
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC----cccccc--ccceeEEEEEEc-----------------------CeEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE----IVTTIP--TIGFNVETVEYK-----------------------NVSF 62 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~----~~~~~~--t~~~~~~~~~~~-----------------------~~~~ 62 (180)
.....++|+++|+.++|||||+++|++.. ..+..+ |++..+..+... ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34667999999999999999999998543 222223 666555443331 2689
Q ss_pred EEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHH
Q 030289 63 TVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEV 138 (180)
Q Consensus 63 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~ 138 (180)
.+|||||++.|.......+..+|++++|+|+++..........+..+.. ....|+++++||+|+.+... .+++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH---cCCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 9999999998888888888899999999999854211222222222211 12357999999999986432 2223
Q ss_pred HhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 139 TDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.+.+... ...+++++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGT--VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3222211 123568999999999999999999988664
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.90 E-value=6.3e-23 Score=158.68 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=89.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC------------------Cccc-------cccccceeEEEEEEcCeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG------------------EIVT-------TIPTIGFNVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~ 68 (180)
.+..+|+|+|++|+|||||+|+|+.. .... ...|+......+...+..+.+||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45789999999999999999999621 1111 2235566677788899999999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
|+..+...+..+++.+|++++|+|+++....+....| ..... .++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999876555544433 33322 46899999999999754
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.90 E-value=2.8e-23 Score=157.90 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=106.5
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY 57 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 57 (180)
....++||+++|++++|||||+++|+... .. +...|++..+..+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34678999999999999999999995432 10 112355666667777
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhh---HH---HHHHHHHHHhcccccCCCe-EEEEEecCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRER---IG---EAKDELHRMLSEDELREAV-LLVFANKQDLP 130 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~ 130 (180)
.+..+.+|||||+++|...+..++..+|++++|+|+++... ++ .....+... . ..++| +++++||+|+.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~---~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-K---TAGVKHLIVLINKMDDP 168 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-H---HcCCCeEEEEeecCCCc
Confidence 88999999999999999999999999999999999986431 11 222222222 1 13455 99999999986
Q ss_pred CCC----CHhHHHhHh----CCCccC-CcceEEEEeeccCCCChHHHHH
Q 030289 131 NAM----SVSEVTDKL----GLHSLR-QRRWYIQAACATSGQGLYEGLD 170 (180)
Q Consensus 131 ~~~----~~~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~ 170 (180)
... ..+++.+++ ....+. ...++++++||++|.|++++.+
T Consensus 169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 421 112222111 111111 1256899999999999999654
No 152
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=4.8e-23 Score=149.68 Aligned_cols=154 Identities=19% Similarity=0.099 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCcc--cccc--ccceeEEEEEEcCeEEEEEEcCCCC-CC--------hhhHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNVSFTVWDVGGQD-KI--------RPLWRHYF 81 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~-~~--------~~~~~~~~ 81 (180)
+..+|+++|++|||||||+|+|++.... +..+ |.......+...+.++.+|||||.. .. ......++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 4558999999999999999999988732 2222 3333344556678899999999987 22 22235567
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC-CCHhHHHhHhCCCccCCcce-EEEEeec
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA-MSVSEVTDKLGLHSLRQRRW-YIQAACA 159 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 159 (180)
+.+|++++|+|+++ +.....++...+.. .+.|+++++||+|+... ....+....+.. ..+. .++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~----~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLAS----QMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHT----TSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHH----hcCcCceEEEEC
Confidence 78999999999976 33344455444332 47899999999999762 222222222211 1222 6899999
Q ss_pred cCCCChHHHHHHHHHHhhh
Q 030289 160 TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 160 ~~~~~i~~~~~~l~~~~~~ 178 (180)
+++.|++++++.+.+.+.+
T Consensus 157 ~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTTTHHHHHHHHHTTCCB
T ss_pred CCCCCHHHHHHHHHHhCCc
Confidence 9999999999999876543
No 153
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=6.6e-24 Score=162.32 Aligned_cols=157 Identities=20% Similarity=0.211 Sum_probs=102.6
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhcCCcccccc----ccceeEEEEEEcCeEEEEEEcCC--------CCCChhh
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNVSFTVWDVGG--------QDKIRPL 76 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~ 76 (180)
..+..+...+|+++|.+|||||||+|+|++.+.....+ |.+..+..+...+..+.+||||| ++.+...
T Consensus 16 ~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~ 95 (456)
T 4dcu_A 16 PRGSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQ 95 (456)
T ss_dssp -------CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHH
T ss_pred CChhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHH
Confidence 34556778899999999999999999999876332222 33333444444678999999999 5556667
Q ss_pred HHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEE
Q 030289 77 WRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQA 156 (180)
Q Consensus 77 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (180)
...+++++|++++|+|..+. +.....++..++.. .+.|+++|+||+|+..... ... .........+++
T Consensus 96 ~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~~--~~~-----e~~~lg~~~~~~ 163 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMRA--NIY-----DFYSLGFGEPYP 163 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-----------C-----CSGGGSSSSEEE
T ss_pred HHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhhh--hHH-----HHHHcCCCceEE
Confidence 88889999999999998753 33445566666544 5789999999999865321 111 111111113579
Q ss_pred eeccCCCChHHHHHHHHHHhh
Q 030289 157 ACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 157 ~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+||.+|.|++++++.+.+.+.
T Consensus 164 iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 164 ISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp CCTTTCTTHHHHHHHHHTTGG
T ss_pred eecccccchHHHHHHHHhhcc
Confidence 999999999999999988765
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=7.8e-24 Score=160.95 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=101.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC--Ccc--------------------------------ccccccceeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYKN 59 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~~ 59 (180)
+..+||+++|+.++|||||+++|+.. .+. ....|++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999864 111 12245666666677788
Q ss_pred eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcc---cccCC-CeEEEEEecCCCCCCC-C
Q 030289 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSE---DELRE-AVLLVFANKQDLPNAM-S 134 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~-~~iiiv~nK~D~~~~~-~ 134 (180)
..+.+|||||+.+|...+..++..+|++++|+|+++ .+++....|..+...+ ....+ .++++++||+|+.+.. +
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 999999999999999999999999999999999987 5565433221111110 01123 4689999999997631 1
Q ss_pred ---Hh----HHHhHhCCCccCCcceEEEEeeccCCCChHHHH
Q 030289 135 ---VS----EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 135 ---~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
.+ ++...+....+....++++++||++|.|+.+++
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 11 122221111111224789999999999998554
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=1.2e-22 Score=150.83 Aligned_cols=156 Identities=20% Similarity=0.146 Sum_probs=106.4
Q ss_pred CccE-EEEEcCCCCChHHHHHHhhcCCc-c--ccccccceeEEEEEEcCeEEEEEEcCCCCC---------ChhhHHhhc
Q 030289 15 KEMR-ILMVGLDAAGKTTILYKLKLGEI-V--TTIPTIGFNVETVEYKNVSFTVWDVGGQDK---------IRPLWRHYF 81 (180)
Q Consensus 15 ~~~~-i~i~G~~~~GKStli~~l~~~~~-~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 81 (180)
..++ |+++|++|||||||+|+|++... . ...+|.++....+.+.+..+.+|||+|... +... ...+
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~ 255 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA 255 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence 3466 99999999999999999998763 1 234577777788888889999999999622 2222 3357
Q ss_pred cccCEEEEEEECCChh--hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH---HH----hHhCCCccCCcce
Q 030289 82 QNTHGLIFVVDSNDRE--RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE---VT----DKLGLHSLRQRRW 152 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~---~~----~~~~~~~~~~~~~ 152 (180)
..+|++++|+|++++. ..+....|.. ++......+.|+++|+||+|+.+.. ..+ .. ..+. ....
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~ 328 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIF 328 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHH-HHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEE
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHH-HHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCC
Confidence 8899999999998765 3344333332 2222223578999999999987643 221 11 1210 1234
Q ss_pred EEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 153 YIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 153 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+++++||+++.|++++++.+.+.+..
T Consensus 329 ~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 68999999999999999999987754
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=1.3e-23 Score=161.56 Aligned_cols=153 Identities=20% Similarity=0.186 Sum_probs=105.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~~ 58 (180)
....+||+++|++++|||||+++|++.. +. ....|++.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 4568999999999999999999997541 00 0123566666777778
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHH-----HHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIG-----EAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~ 133 (180)
+..+.+|||||+++|...+..++.++|++++|+|+++..... ....++..+... ....|+++|+||+|+.+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccch
Confidence 899999999999999999999999999999999998764322 122222222222 1235699999999997632
Q ss_pred --CHhHHHhHhC----CCccCCcceEEEEeeccCCCChHH
Q 030289 134 --SVSEVTDKLG----LHSLRQRRWYIQAACATSGQGLYE 167 (180)
Q Consensus 134 --~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 167 (180)
..+++.+.+. ........++++++||++|.|+++
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1222222111 111122367999999999999985
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.89 E-value=7e-23 Score=160.16 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=107.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccc-----cccceeEEEEE----------------EcCeEEEEEEcCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVE----------------YKNVSFTVWDVGGQDK 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-----~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 72 (180)
.+.++|+++|++++|||||+++|.+.....+. ++++..+.... .....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 56789999999999999999999865533222 23443333221 1123699999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCC---hhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--------------H
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSND---RERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--------------V 135 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--------------~ 135 (180)
|...+..+++.+|++++|+|+++ +.+++.+. .+ . ..++|+++++||+|+..... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~---~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-R---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-H---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-H---HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99888888999999999999998 44443332 12 1 24789999999999864211 0
Q ss_pred h-----------HHHhHh---CCCc-----c--CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 136 S-----------EVTDKL---GLHS-----L--RQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 136 ~-----------~~~~~~---~~~~-----~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+ ++...+ +... . .....+++++||++|.|++++++++...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 111111 1100 0 123569999999999999999999987654
No 158
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=1.4e-22 Score=158.37 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------cccccceeEEEEEEc-----CeEEEEEEcCCCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------TIPTIGFNVETVEYK-----NVSFTVWDVGGQD 71 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~ 71 (180)
+..||+|+|+.++|||||+++|+... ... ...|+......+.+. ++.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46799999999999999999998632 110 011333233344333 4789999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLR 148 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~ 148 (180)
.|...+..+++.+|++++|+|+++....+....|.... ..++|+++|+||+|+..... .+++.+.++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-----~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~-- 155 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-----EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA-- 155 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-----HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC--
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCc--
Confidence 99999999999999999999999876666666665544 24689999999999986431 123333333221
Q ss_pred CcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 149 QRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 149 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
..++++||++|.|++++++++.+.+..
T Consensus 156 ---~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 156 ---TDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp ---TTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ---ceEEEeecccCCCchhHHHHHhhcCCC
Confidence 148999999999999999999988754
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.89 E-value=2.2e-23 Score=149.76 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=90.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC-c-ccc-------ccccceeEEEEEE----cCeEEEEEEcCCCC-------CC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE-I-VTT-------IPTIGFNVETVEY----KNVSFTVWDVGGQD-------KI 73 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~-~-~~~-------~~t~~~~~~~~~~----~~~~~~i~D~~G~~-------~~ 73 (180)
...++|+++|.+|+|||||+|+|++.. . ..+ .+|++........ ..+.+.+|||||.. .+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 347899999999999999999988766 2 222 5677766665554 23589999999963 23
Q ss_pred hhhH-------Hhhccc-------------cCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289 74 RPLW-------RHYFQN-------------THGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133 (180)
Q Consensus 74 ~~~~-------~~~~~~-------------~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~ 133 (180)
.... ..++.. +|+++++++..+.........++..+ .. ++|+++|+||+|+.+..
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence 3333 444443 78999999766422112223334433 22 68999999999987643
Q ss_pred CHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 134 SVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
........+. ..+...+++++.+|+.+++|++++++++.+.+
T Consensus 161 e~~~~~~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHH-HHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 3333222111 11223456789999999999999999998764
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=2.6e-22 Score=156.68 Aligned_cols=154 Identities=19% Similarity=0.224 Sum_probs=110.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--ccc----------------cccccceeEEEEEEc-----CeEEEEEEcCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVT----------------TIPTIGFNVETVEYK-----NVSFTVWDVGGQ 70 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~----------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~ 70 (180)
.+..||+++|+.++|||||+++|+... ... ...|+......+.+. .+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999997521 110 111333223334332 378999999999
Q ss_pred CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH----HHhHhCCCc
Q 030289 71 DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE----VTDKLGLHS 146 (180)
Q Consensus 71 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~----~~~~~~~~~ 146 (180)
..|...+..++..+|++++|+|+++....+....|.... ..++|+++|+||+|+.... .++ +.+.++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-----~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~- 156 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-----EQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD- 156 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-----HTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC-
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-----HCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC-
Confidence 999988999999999999999999887777766665543 2478999999999997643 333 22222221
Q ss_pred cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 147 LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
...++++||++|.|++++++++.+.+..
T Consensus 157 ----~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 157 ----PEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ----GGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ----cccEEEEEeecCCCchHHHHHHHHhccc
Confidence 1248999999999999999999987753
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.6e-23 Score=162.60 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=105.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--ccc--------------------------------cccccceeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IVT--------------------------------TIPTIGFNVETVEYKN 59 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~ 59 (180)
...+||+++|++++|||||+++|++.. ... ...|++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 568999999999999999999998653 111 1236666677788889
Q ss_pred eEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hH--HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289 60 VSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RI--GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~ 134 (180)
..+.+|||||++.|...+..++..+|++++|+|+++.. ++ .....++..+... ....|+++|+||+|+.+...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEECTTTTTTCH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEecccccchhH
Confidence 99999999999999999999999999999999998632 11 0111122222222 12346999999999976221
Q ss_pred --HhHHHhHh----CCCccCCcceEEEEeeccCCCChHHH
Q 030289 135 --VSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 135 --~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
.+++...+ ....+....++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 12222111 11111223568999999999999865
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.89 E-value=3.7e-23 Score=157.22 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=102.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--c-cc---------------------------------cccccceeEEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--I-VT---------------------------------TIPTIGFNVETVEY 57 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~-~~---------------------------------~~~t~~~~~~~~~~ 57 (180)
+..+||+++|++++|||||+++|++.. . .. ...|++..+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999997543 0 00 11244445556666
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC--H
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS--V 135 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~--~ 135 (180)
.+..+.+|||||++.|...+..++..+|++++|+|+++... .....++... .. ....|+++|+||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~-~~--~~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIA-SL--LGIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHH-HH--TTCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEEcCcCCcccHHHH
Confidence 88899999999999998888889999999999999987542 2233333322 21 12246999999999976321 1
Q ss_pred hHHHhHh----CCCccCCcceEEEEeeccCCCChHHH
Q 030289 136 SEVTDKL----GLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 136 ~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
+++.... .........++++++||++|.|++++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1121111 11110123478999999999999974
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=2.6e-22 Score=142.11 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=105.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCCc-ccc----ccccceeEEEEEEcCeEEEEEEcCCC--------CCChhhHHh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGEI-VTT----IPTIGFNVETVEYKNVSFTVWDVGGQ--------DKIRPLWRH 79 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~ 79 (180)
....+||+++|.+|||||||+|++++... ... ..|.......+...+..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35789999999999999999999998772 221 13555666777788999999999995 333333333
Q ss_pred hc----cccCEEEEEEECCChhhH-HHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhC----CCccCCc
Q 030289 80 YF----QNTHGLIFVVDSNDRERI-GEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLG----LHSLRQR 150 (180)
Q Consensus 80 ~~----~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~ 150 (180)
++ +++|++++|+|+++.... .....++...... ...+.|+++++||+|+... ..++...... .......
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHc
Confidence 33 899999999999753221 2233444444322 2236899999999999763 2332221100 0011122
Q ss_pred ceEEEEeeccC-----CCChHHHHHHHHHHhhhc
Q 030289 151 RWYIQAACATS-----GQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 151 ~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~~ 179 (180)
+..++..+... +.+++++++.+.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 33344444333 579999999999888753
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.88 E-value=3.2e-23 Score=155.92 Aligned_cols=158 Identities=17% Similarity=0.107 Sum_probs=109.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC-------cc------------ccccccceeEEEEEEcCeEEEEEEcCCCCCChh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRP 75 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 75 (180)
.++||+++|++++|||||+++|++.. +. ....|++..+..+...+..+.+|||||++.|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998631 10 112355555555666778999999999999888
Q ss_pred hHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCccCC
Q 030289 76 LWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHSLRQ 149 (180)
Q Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~~~ 149 (180)
.+..++..+|++++|+|+++....+. ..++... .. .++| +++++||+|+.+... .+ ++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88899999999999999987543222 2333222 21 3677 789999999975221 11 1211111111112
Q ss_pred cceEEEEeeccCCCC----------hHHHHHHHHHHhh
Q 030289 150 RRWYIQAACATSGQG----------LYEGLDWLSSNVS 177 (180)
Q Consensus 150 ~~~~~~~~Sa~~~~~----------i~~~~~~l~~~~~ 177 (180)
..++++++||++|.| ++++++.+.+.+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 246899999999765 8899999887654
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=3.1e-23 Score=156.44 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=111.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC--------Ccc------------ccccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG--------EIV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDK 72 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (180)
.+..+||+++|++++|||||+++|++. .+. ....|+......+...+..+.+|||||++.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 456799999999999999999999863 111 112255555556666788999999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCc
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHS 146 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~ 146 (180)
|...+..++..+|++++|+|+++... .....++..... .++| +++++||+|+.+... .+ ++.+.+....
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 98888999999999999999987543 333444443322 3677 899999999975221 11 1111111111
Q ss_pred cCCcceEEEEeeccCCCC------------------hHHHHHHHHHHhh
Q 030289 147 LRQRRWYIQAACATSGQG------------------LYEGLDWLSSNVS 177 (180)
Q Consensus 147 ~~~~~~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~ 177 (180)
+....++++++||++|.| ++++++.+.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 112246899999999987 7788887776553
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=4.4e-23 Score=145.44 Aligned_cols=167 Identities=14% Similarity=0.086 Sum_probs=98.8
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcCCc-cccc----cccceeEEEEEEcCeEEEEEEcCCCCC-----------C
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLGEI-VTTI----PTIGFNVETVEYKNVSFTVWDVGGQDK-----------I 73 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~-----------~ 73 (180)
+......+||+++|++|||||||+|+|++... .... .|..+....+...+..+.+|||||... +
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 44456789999999999999999999998773 3222 345566667777889999999999442 3
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhC---CCccCC
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLG---LHSLRQ 149 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~---~~~~~~ 149 (180)
......+++++|++++|+|+++... ....++..+.... .....|+++|+||+|+......++...... ......
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 3445556677899999999875433 1122222222111 112458999999999876544332211100 001112
Q ss_pred cceEEEEeeccC-----CCChHHHHHHHHHHhhh
Q 030289 150 RRWYIQAACATS-----GQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 150 ~~~~~~~~Sa~~-----~~~i~~~~~~l~~~~~~ 178 (180)
.+..++.++... ..++.+++..+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 233355555443 36899999998887755
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=1.1e-23 Score=161.27 Aligned_cols=156 Identities=20% Similarity=0.188 Sum_probs=107.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccc-c--ccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFV 90 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 90 (180)
.+..+|+++|++++|||||+++|....... . ..|.......+...+..+.+|||||++.|...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998654221 1 1233333334445677899999999999998888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC--ccCC--cceEEEEeeccCCCChH
Q 030289 91 VDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH--SLRQ--RRWYIQAACATSGQGLY 166 (180)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~~i~ 166 (180)
+|+++....+.. ..+.... ..++|+++++||+|+.+.. .+++...+... .... ..++++++||++|.|++
T Consensus 82 Vda~~g~~~qT~-e~l~~~~----~~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQTI-EAIQHAK----AAQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTTTH-HHHHHHH----HTTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHHHH-HHHHHHH----hcCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 999873211111 1222221 2478999999999997521 11122121111 1111 23689999999999999
Q ss_pred HHHHHHHHH
Q 030289 167 EGLDWLSSN 175 (180)
Q Consensus 167 ~~~~~l~~~ 175 (180)
++++++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998754
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.88 E-value=8.6e-22 Score=143.02 Aligned_cols=157 Identities=19% Similarity=0.191 Sum_probs=101.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-------ccccc----------------------cce--------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------IGF-------------- 50 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-------~~~~t----------------------~~~-------------- 50 (180)
...++|+|+|.+|||||||+|+|++..+. +..|+ ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999987632 11222 000
Q ss_pred -------e----EEEEEE-cCeEEEEEEcCCCC-------------CChhhHHhhccccCEEE-EEEECCChhhHHHHHH
Q 030289 51 -------N----VETVEY-KNVSFTVWDVGGQD-------------KIRPLWRHYFQNTHGLI-FVVDSNDRERIGEAKD 104 (180)
Q Consensus 51 -------~----~~~~~~-~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~~~~~~~~ 104 (180)
. ...+.. ....+.+|||||.. .+......+++.++.++ +|+|+++.........
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0 001111 24689999999953 23456777888888776 7899976433333333
Q ss_pred HHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 105 ELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 105 ~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
++..+ . ..+.|+++|+||+|+.+... ..+.... ..........+++++||++|.|++++++++.+.
T Consensus 184 ~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTT-CSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhC-CcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 44433 2 24689999999999976433 2222211 001111112478999999999999999998763
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.87 E-value=1.2e-23 Score=161.06 Aligned_cols=157 Identities=16% Similarity=0.164 Sum_probs=91.6
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY 57 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 57 (180)
.....+||+++|+.++|||||+++|+... +. ....|++..+..+..
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 45678999999999999999999997421 10 123466666666777
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAM 133 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~ 133 (180)
.+..+.+|||||++.|...+..++..+|++++|+|+++.. +|+...++...+... ...++| +++++||+|+.+..
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEEECTTSTTCS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEEECccCCCcc
Confidence 8899999999999999988888999999999999998752 222111222111111 123566 99999999996421
Q ss_pred -C---HhH----HHhHhCCC-ccC-CcceEEEEeeccCCCChHHHH
Q 030289 134 -S---VSE----VTDKLGLH-SLR-QRRWYIQAACATSGQGLYEGL 169 (180)
Q Consensus 134 -~---~~~----~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~i~~~~ 169 (180)
+ .++ +...+... .+. ..+++++++||++|.|+++++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 111 11111100 111 125789999999999998755
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.87 E-value=1.7e-21 Score=150.76 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=84.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--cc-----------------------ccccccceeEEEEEEcCeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--IV-----------------------TTIPTIGFNVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~ 68 (180)
.+..||+++|++|+|||||+++|+... .. ....|+......+...+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 567999999999999999999998632 10 01113334455677788999999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
|+..|...+..+++.+|++++|+|+++.... .....+... . ..++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-R---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-T---TTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-H---HcCCCEEEEEcCcCCccc
Confidence 9999998888999999999999999875321 222222222 2 247899999999999764
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.87 E-value=3.5e-22 Score=152.64 Aligned_cols=152 Identities=16% Similarity=0.124 Sum_probs=104.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC--Ccc--------------------------------ccccccceeEEEEEEc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG--EIV--------------------------------TTIPTIGFNVETVEYK 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 58 (180)
.+..++|+++|++++|||||+++|++. .+. ....|++..+..+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356799999999999999999999853 111 1234667777777888
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hHH---HHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RIG---EAKDELHRMLSEDELREAV-LLVFANKQDLPN 131 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~ 131 (180)
+..+.+|||||++.|...+..++..+|++++|+|+++.. +++ ....++... . ..++| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~---~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-F---TLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-H---HTTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-H---HcCCCeEEEEEEcccccc
Confidence 899999999999999999999999999999999998642 121 222222222 1 13454 999999999974
Q ss_pred C--CCHhHHHhHh----CCCccCCcceEEEEeeccCCCChHHH
Q 030289 132 A--MSVSEVTDKL----GLHSLRQRRWYIQAACATSGQGLYEG 168 (180)
Q Consensus 132 ~--~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~~ 168 (180)
. ...+++..+. ....+....++++++||++|.|++++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1111221111 11111112468999999999998753
No 172
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.8e-23 Score=153.04 Aligned_cols=159 Identities=15% Similarity=0.194 Sum_probs=85.0
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-ccc-c--------ccccceeEEEEEE--c--CeEEEEEEcCCC-------
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVT-T--------IPTIGFNVETVEY--K--NVSFTVWDVGGQ------- 70 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~-~--------~~t~~~~~~~~~~--~--~~~~~i~D~~G~------- 70 (180)
.....++|+++|++|+|||||+|+|++.. +.. + .+|++.....+.. . ...+.+|||||.
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 34567999999999999999999987654 221 1 1455444433322 2 347999999998
Q ss_pred CCChhhHH-------hhccccC-------------EEEEEEECCChhhHHHHHH-HHHHHhcccccCCCeEEEEEecCCC
Q 030289 71 DKIRPLWR-------HYFQNTH-------------GLIFVVDSNDRERIGEAKD-ELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 71 ~~~~~~~~-------~~~~~~~-------------~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
+.+..++. .+++.++ +++|+++.. ..++..+.. ++..+ . .++|+++|+||+|+
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-~----~~~piIlV~NK~Dl 186 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-H----NKVNIVPVIAKADT 186 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-C----S-SCEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-c----cCCCEEEEEECCCC
Confidence 66666655 6665543 455555431 344444443 33332 2 57899999999999
Q ss_pred CCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 130 PNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
.+.......... ....+...+++++++||+++.+ ++.|.++.+.+.+
T Consensus 187 ~~~~ev~~~k~~-i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 187 LTLKERERLKKR-ILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp SCHHHHHHHHHH-HHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 874433322111 1122344567899999999998 8888888777654
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.85 E-value=3.9e-23 Score=161.93 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=89.6
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC--cc--------------------------------ccccccceeEEEEEE
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IV--------------------------------TTIPTIGFNVETVEY 57 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 57 (180)
.....+||+++|++++|||||+++|+... .. ....|++.....+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34667899999999999999999996421 00 112255555556666
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh---hH--HHHHHHHHHHhcccccCCCe-EEEEEecCCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE---RI--GEAKDELHRMLSEDELREAV-LLVFANKQDLPN 131 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~ 131 (180)
.+..+.+|||||+..|...+..++..+|++|+|+|+++.. .+ ......+..++.. .++| +++|+||+|+.+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccc
Confidence 7789999999999999888888889999999999997532 11 1111111112221 2454 999999999875
Q ss_pred CC--CHh----HHHhHh-CCCccCCcceEEEEeeccCCCChH--------------HHHHHHHHHh
Q 030289 132 AM--SVS----EVTDKL-GLHSLRQRRWYIQAACATSGQGLY--------------EGLDWLSSNV 176 (180)
Q Consensus 132 ~~--~~~----~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~--------------~~~~~l~~~~ 176 (180)
.. ..+ ++...+ ....+....++++++||++|.||+ ++++.|.+.+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 21 122 222232 222233346789999999999998 6777776543
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.85 E-value=1e-20 Score=150.75 Aligned_cols=115 Identities=22% Similarity=0.134 Sum_probs=88.2
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--c------------c-------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--I------------V-------TTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
..+..||+|+|++|+|||||+++|+... . . ...+|+......+...+..+.+|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 4668899999999999999999998311 0 0 22456666667777789999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
.+...+..+++.+|++++|+|+++....+....|.. ... .++|+++|+||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 999999999999999999999998766655554443 222 47899999999998764
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.85 E-value=2e-21 Score=159.03 Aligned_cols=160 Identities=17% Similarity=0.133 Sum_probs=108.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC-------cc------------ccccccceeEEEEEEcCeEEEEEEcCCCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE-------IV------------TTIPTIGFNVETVEYKNVSFTVWDVGGQDKI 73 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~-------~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 73 (180)
....+||+++|++++|||||+++|++.. .. +...|+......+...+..+.+|||||++.|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3567899999999999999999998631 00 1112333444455567789999999999999
Q ss_pred hhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCCCCCCCC-Hh----HHHhHhCCCcc
Q 030289 74 RPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQDLPNAMS-VS----EVTDKLGLHSL 147 (180)
Q Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D~~~~~~-~~----~~~~~~~~~~~ 147 (180)
...+..++..+|++++|+|+++... .....++..+.. .++| +++++||+|+.+... .+ ++.+.+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 8888899999999999999987532 223333333321 3577 899999999986321 11 12111111111
Q ss_pred CCcceEEEEeeccCC--------CChHHHHHHHHHHhh
Q 030289 148 RQRRWYIQAACATSG--------QGLYEGLDWLSSNVS 177 (180)
Q Consensus 148 ~~~~~~~~~~Sa~~~--------~~i~~~~~~l~~~~~ 177 (180)
....++++++||++| .|++++++.+.+.+.
T Consensus 448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 223468999999999 468899998887553
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.84 E-value=1.3e-20 Score=130.11 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=97.1
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC-cccccccccee--EEEEEEcCeEEEEEEcCCCCC----------ChhhHH
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE-IVTTIPTIGFN--VETVEYKNVSFTVWDVGGQDK----------IRPLWR 78 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~-~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 78 (180)
......+|+++|++|||||||+|+|++.. .....++.+.. ...+...+ .+.+|||||... +.....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 34667899999999999999999999776 23333444422 22333333 688999999743 122233
Q ss_pred hhc---cccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHhHhCCCccCC
Q 030289 79 HYF---QNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTDKLGLHSLRQ 149 (180)
Q Consensus 79 ~~~---~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~~~~~~~~~~ 149 (180)
.++ ..++++++++|+.++.+.. .+..|+. ..+.|+++++||+|+.+... .......... ..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---~~ 170 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV-------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FN 170 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH-------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---cC
Confidence 444 4689999999998754432 1222221 24678999999999876321 1122222110 12
Q ss_pred cceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 150 RRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
..+.++++|++++.|++++++.+.+.+.+
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 24678999999999999999999887644
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.84 E-value=2.1e-20 Score=133.41 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=82.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhcc-------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQ------- 82 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------- 82 (180)
++.++|+++|++|+|||||+|+|++... ....+ |.......+...+..+.+|||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 4789999999999999999999998773 22222 455666677788999999999998776544333332
Q ss_pred --ccCEEEEEEECCChhhHHHH-HHHHHHHhccc-ccCCCeEEEEEecCCCCC
Q 030289 83 --NTHGLIFVVDSNDRERIGEA-KDELHRMLSED-ELREAVLLVFANKQDLPN 131 (180)
Q Consensus 83 --~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~ 131 (180)
++|++++|++++... +... ..|+..+.... .....|+++|+||+|+.+
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 789999999987543 3222 34444433221 112348999999999853
No 178
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=2.3e-21 Score=144.68 Aligned_cols=133 Identities=24% Similarity=0.374 Sum_probs=105.7
Q ss_pred cccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCC----------hhhHHHHHHHHHHHhccccc
Q 030289 46 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSND----------RERIGEAKDELHRMLSEDEL 115 (180)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 115 (180)
+|+|+....+.++++.+++|||+|++.++..|..++++++++|+|||+++ ..+++....|+..+......
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 47778888888899999999999999999999999999999999999998 88999999999999877666
Q ss_pred CCCeEEEEEecCCCCCCC------C--------------------------HhHHHhHh-----CC---CccCCcceEEE
Q 030289 116 REAVLLVFANKQDLPNAM------S--------------------------VSEVTDKL-----GL---HSLRQRRWYIQ 155 (180)
Q Consensus 116 ~~~~iiiv~nK~D~~~~~------~--------------------------~~~~~~~~-----~~---~~~~~~~~~~~ 155 (180)
.++|+++|+||+|+..+. . .++..... .. .......+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 789999999999974310 0 11111100 00 00012357889
Q ss_pred EeeccCCCChHHHHHHHHHHhhh
Q 030289 156 AACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+|||+++.||+++|.++.+.+.+
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHHH
Confidence 99999999999999999887764
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=3.3e-20 Score=147.89 Aligned_cols=162 Identities=19% Similarity=0.241 Sum_probs=107.7
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCC--ccccccccce----eE-----EEEEE-----------------------
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGE--IVTTIPTIGF----NV-----ETVEY----------------------- 57 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~--~~~~~~t~~~----~~-----~~~~~----------------------- 57 (180)
.....++|+|+|++|+|||||+|+|++.. .....|++.. .+ .+...
T Consensus 65 l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 65 LQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 35679999999999999999999999876 2233343310 00 01111
Q ss_pred -----------------------c----CeEEEEEEcCCCCC---ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHH
Q 030289 58 -----------------------K----NVSFTVWDVGGQDK---IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELH 107 (180)
Q Consensus 58 -----------------------~----~~~~~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 107 (180)
. +..+.+|||||... ....+..+++++|++++|+|++++.+......|..
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~ 224 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLEN 224 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHH
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHH
Confidence 0 03689999999443 34567788899999999999988766665554443
Q ss_pred HHhcccccCCCeEEEEEecCCCCCCC-----CHhH-------HHh----HhCCCccC-----CcceEEEEeecc------
Q 030289 108 RMLSEDELREAVLLVFANKQDLPNAM-----SVSE-------VTD----KLGLHSLR-----QRRWYIQAACAT------ 160 (180)
Q Consensus 108 ~~~~~~~~~~~~iiiv~nK~D~~~~~-----~~~~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~------ 160 (180)
.+ .. .+.|+++|+||+|+.... ..++ +.. .+. .... ....+++++||+
T Consensus 225 ~l-~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~-~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 225 YI-KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLA-EYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HT-TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHG-GGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HH-Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcEEEEeChHHHHhh
Confidence 33 22 367899999999986432 1111 111 111 1111 123468999999
Q ss_pred --------CCCChHHHHHHHHHHhhh
Q 030289 161 --------SGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 161 --------~~~~i~~~~~~l~~~~~~ 178 (180)
++.|+++++..+.+.+..
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.83 E-value=3.6e-19 Score=141.94 Aligned_cols=115 Identities=19% Similarity=0.112 Sum_probs=87.7
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC--Ccc-------------------ccccccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG--EIV-------------------TTIPTIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~--~~~-------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
..+..+|+|+|++|+|||||+|+|+.. ... ....|+......+...+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 466789999999999999999999841 110 11235555566677788999999999999
Q ss_pred CChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 72 KIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
.+...+..+++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 99988999999999999999998866655544443 2322 37899999999999764
No 181
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.82 E-value=8.2e-20 Score=133.53 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=96.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-cccc-c-ccce---eE-----------------------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTTI-P-TIGF---NV----------------------------------- 52 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~-~-t~~~---~~----------------------------------- 52 (180)
....+|+|+|++|||||||+|+|++... .... . |... ..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4567999999999999999999998763 1111 0 0000 00
Q ss_pred -------------------EE---EEEcCeEEEEEEcCCCCC-------------ChhhHHhhccccCEEEEEEECCChh
Q 030289 53 -------------------ET---VEYKNVSFTVWDVGGQDK-------------IRPLWRHYFQNTHGLIFVVDSNDRE 97 (180)
Q Consensus 53 -------------------~~---~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (180)
.. ......++.+|||||... +......++.++|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 111346799999999754 3456778889999999999974332
Q ss_pred hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccC---CCChHHHHHHHH
Q 030289 98 RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATS---GQGLYEGLDWLS 173 (180)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~ 173 (180)
........+...+.. .+.|+++|+||+|+.+... ..+.... ..........+++.+|+.+ +.|++++++.+.
T Consensus 182 ~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 182 LANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTG-RVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp STTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTT-SSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred hhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhC-CCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 111111112222222 4689999999999876443 2222211 0011101123555666666 789999999988
Q ss_pred HHhhh
Q 030289 174 SNVSA 178 (180)
Q Consensus 174 ~~~~~ 178 (180)
+.+..
T Consensus 258 ~~~~~ 262 (315)
T 1jwy_B 258 LYFKN 262 (315)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 77654
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.82 E-value=4e-19 Score=141.83 Aligned_cols=115 Identities=16% Similarity=0.026 Sum_probs=85.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC--cc-------------------ccccccceeEEEEEEcC-------eEEEE
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE--IV-------------------TTIPTIGFNVETVEYKN-------VSFTV 64 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~i 64 (180)
..+..||+|+|+.|+|||||+++|+... .. +...|+......+...+ +.+.+
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4678899999999999999999997431 11 11224444445555555 89999
Q ss_pred EEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 65 WDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 65 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
|||||+..|...+..+++.+|++++|+|+++....+....| .... ..++|+++|+||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH----HcCCCEEEEEeCCCcccc
Confidence 99999999998999999999999999999876544333333 2222 246899999999998753
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.82 E-value=2.2e-19 Score=142.60 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc--------------c-------cccccceeEEEEEEcCeEEEEEEcCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV--------------T-------TIPTIGFNVETVEYKNVSFTVWDVGGQDK 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 72 (180)
.+..+|+|+|++|+|||||+++|++.... . ...|+......+...++.+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 56789999999999999999999842210 0 11244445556666889999999999999
Q ss_pred ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 73 IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 73 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
+...+..+++.+|++++|+|+.+.-..+ ...++..... .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888999999999999999987643322 2234433322 368999999999987
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.82 E-value=2.9e-19 Score=134.35 Aligned_cols=157 Identities=23% Similarity=0.236 Sum_probs=108.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCc--ccc-ccccceeEEEEEEcC-eEEEEEEcCCCCCC-------hhhHHhhccccC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEI--VTT-IPTIGFNVETVEYKN-VSFTVWDVGGQDKI-------RPLWRHYFQNTH 85 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~--~~~-~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 85 (180)
-.|+++|++|||||||++++++... ..+ ..|.......+...+ ..+.+||+||.... .........+++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 4689999999999999999987752 111 124455555666654 78999999997432 111222345799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCC
Q 030289 86 GLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQG 164 (180)
Q Consensus 86 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 164 (180)
.++.++|++ .+.+..+..+..+..... .....|.++++||+|+......+++.... ...+.+++.+||++++|
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~g 311 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAG 311 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccC
Confidence 999999997 556666666655554332 12357899999999987642222222222 12345799999999999
Q ss_pred hHHHHHHHHHHhhhc
Q 030289 165 LYEGLDWLSSNVSAK 179 (180)
Q Consensus 165 i~~~~~~l~~~~~~~ 179 (180)
++++++++.+.+.+.
T Consensus 312 i~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 312 LPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=1.1e-18 Score=124.96 Aligned_cols=118 Identities=11% Similarity=0.083 Sum_probs=79.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcccc--c--cccceeEEEEEEcCeEEEEEEcCCCCCChhh-------HHhh--
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTT--I--PTIGFNVETVEYKNVSFTVWDVGGQDKIRPL-------WRHY-- 80 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~-- 80 (180)
...++|+++|.+|+|||||+|+|++...... . .|.......+...+..+.+|||||...+... ...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3579999999999999999999998773221 1 1333444556668899999999998665321 1122
Q ss_pred ccccCEEEEEEECCChhhHHHH-HHHHHHHhcccc-cCCCeEEEEEecCCCCCC
Q 030289 81 FQNTHGLIFVVDSNDRERIGEA-KDELHRMLSEDE-LREAVLLVFANKQDLPNA 132 (180)
Q Consensus 81 ~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~~iiiv~nK~D~~~~ 132 (180)
.+.+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+.++
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2479999999998653 23322 344444432211 112689999999998753
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.78 E-value=4.5e-19 Score=131.88 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=95.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCCc-ccccccc--ce-----------------------------------------
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTI--GF----------------------------------------- 50 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~~-~~~~~t~--~~----------------------------------------- 50 (180)
.-..|+|+|++|||||||+|+|++..+ +....++ ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 344999999999999999999998663 1111100 00
Q ss_pred -----------eEEEEEE---cCeEEEEEEcCCCCCC-------------hhhHHhhccccCEEEEEEECCChhhH-HHH
Q 030289 51 -----------NVETVEY---KNVSFTVWDVGGQDKI-------------RPLWRHYFQNTHGLIFVVDSNDRERI-GEA 102 (180)
Q Consensus 51 -----------~~~~~~~---~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~ 102 (180)
....+.+ ....+.+|||||...+ ......+++++|++++|+|..+.+.. ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0001111 2457899999997775 66788899999999999987543322 222
Q ss_pred HHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHH
Q 030289 103 KDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 103 ~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
..++..+ ...+.|+++|+||+|+.+... ..+.... .....+.+|+.+|+.++.++++.+..
T Consensus 193 ~~l~~~~----~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 193 IKISREV----DPSGDRTFGVLTKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHS----CTTCTTEEEEEECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHh----cccCCCEEEEEeCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCH
Confidence 2222222 224678999999999876432 2222211 22344567999999998888765544
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.77 E-value=6e-19 Score=130.89 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=94.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-------ccccc----------------------c----------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPT----------------------I---------------- 48 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-------~~~~t----------------------~---------------- 48 (180)
....+|+|+|.+|||||||+|+|++.++. +..|+ .
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 44679999999999999999999987632 11122 0
Q ss_pred -----ceeE----EEEEE-cCeEEEEEEcCCCCC-------------ChhhHHhhccccCEE-EEEEECCChhhHHHHHH
Q 030289 49 -----GFNV----ETVEY-KNVSFTVWDVGGQDK-------------IRPLWRHYFQNTHGL-IFVVDSNDRERIGEAKD 104 (180)
Q Consensus 49 -----~~~~----~~~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~ 104 (180)
++.. ..+.. ....+.+|||||... +......++.+++.+ +++.+++..-.-.....
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0000 01111 246899999999532 344566777666655 55556553211112222
Q ss_pred HHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcc-eEEEEeeccCCCChHHHHHHHHH
Q 030289 105 ELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRR-WYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 105 ~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
++..+ . ..+.|+++|+||+|+.+... ..+... ........+ .+++++||+++.|++++++.+.+
T Consensus 189 i~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~--~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHH-C---TTCTTEEEEEECGGGSCTTCCCHHHHT--TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHh-C---cCCCceEEEeccccccCcchhHHHHHh--CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33333 2 24789999999999976432 222222 111111223 47899999999999999998876
No 188
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=9.2e-20 Score=132.35 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=80.1
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcC-Ccc-cc--------ccccceeEEEEEE----cCeEEEEEEcCCC------
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLG-EIV-TT--------IPTIGFNVETVEY----KNVSFTVWDVGGQ------ 70 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~-~~~-~~--------~~t~~~~~~~~~~----~~~~~~i~D~~G~------ 70 (180)
....-.++|+++|++|||||||+++|++. ... .. .+|.......+.. ....+.+||++|.
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~ 92 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC 92 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--------
T ss_pred EEcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc
Confidence 44566799999999999999999998765 322 11 1233222222222 3468999999997
Q ss_pred -CCChhhHH-------hhcccc-------------CEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCC
Q 030289 71 -DKIRPLWR-------HYFQNT-------------HGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQD 128 (180)
Q Consensus 71 -~~~~~~~~-------~~~~~~-------------~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D 128 (180)
+.+..... .+++.. ++++++.+++. .+++... ..+..+ ....++++|+||+|
T Consensus 93 ~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~D 166 (301)
T 2qnr_A 93 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKAD 166 (301)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCC
Confidence 55555544 444433 33555554432 1222222 233332 13578999999999
Q ss_pred CCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 129 LPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
+.+........ ......+...+++++++||+++ |++++|.++.+.+.+
T Consensus 167 l~~~~e~~~~~-~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 167 TLTLKERERLK-KRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp GSCHHHHHHHH-HHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred CCCHHHHHHHH-HHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 87643221111 1111223344678999999999 999999999988764
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=5e-19 Score=132.72 Aligned_cols=80 Identities=28% Similarity=0.289 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-ccccc--cccceeEEEEE---------------------Ec---CeEEEEEEcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTTI--PTIGFNVETVE---------------------YK---NVSFTVWDVGG 69 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~~--~t~~~~~~~~~---------------------~~---~~~~~i~D~~G 69 (180)
++|+++|.+|||||||+|+|++.. ..... .|......... .. ..++.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999876 22222 23333333211 11 36899999999
Q ss_pred CCC----ChhhHH---hhccccCEEEEEEECCCh
Q 030289 70 QDK----IRPLWR---HYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 70 ~~~----~~~~~~---~~~~~~~~~i~v~d~~~~ 96 (180)
... ...+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 222333 346889999999999764
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=9.4e-19 Score=129.87 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=95.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC------C--cccccccc---------------------ceeEE-----------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG------E--IVTTIPTI---------------------GFNVE----------- 53 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~~t~---------------------~~~~~----------- 53 (180)
.+.++|+++|.+|+|||||+++|... + .....+.. +....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 45789999999999999999999632 1 00101000 00000
Q ss_pred ---------EEEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289 54 ---------TVEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA 124 (180)
Q Consensus 54 ---------~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~ 124 (180)
.+...+..+.+|||||... ........+|++++|+|....+.++.+.. .....|.++|+
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVl 224 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVV 224 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEE
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEE
Confidence 0011467899999999432 33344588999999999876544322211 11245889999
Q ss_pred ecCCCCCCCCHh----HHHhHhCCCc--cCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 125 NKQDLPNAMSVS----EVTDKLGLHS--LRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 125 nK~D~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
||+|+.+..... ++...+.... ....+.+++++||++|.|++++++++.+.+..
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999987532222 2222211000 01123579999999999999999999887653
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.73 E-value=6.2e-18 Score=131.63 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=83.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc----cccccccceeEEEEE---------------------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVE--------------------------------- 56 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~----~~~~~t~~~~~~~~~--------------------------------- 56 (180)
....+|+|+|.+|+|||||+|+|++... ....|++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 4568999999999999999999998773 233333221100000
Q ss_pred -----EcC---eEEEEEEcCCCCC-----------ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCC
Q 030289 57 -----YKN---VSFTVWDVGGQDK-----------IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELRE 117 (180)
Q Consensus 57 -----~~~---~~~~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (180)
... ..+.+|||||... +......++.++|++++|+|+++.........++..+.. .+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC
Confidence 000 3689999999764 446677788999999999999875444555566555422 35
Q ss_pred CeEEEEEecCCCCCCCCHhHH
Q 030289 118 AVLLVFANKQDLPNAMSVSEV 138 (180)
Q Consensus 118 ~~iiiv~nK~D~~~~~~~~~~ 138 (180)
.|+++|+||+|+.+...+.++
T Consensus 219 ~pvilVlNK~Dl~~~~el~~~ 239 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMRV 239 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHHH
Confidence 789999999999875444443
No 192
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.73 E-value=7.5e-17 Score=125.44 Aligned_cols=113 Identities=18% Similarity=0.169 Sum_probs=85.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC------------------cc-------ccccccceeEEEEEEcCeEEEEEEcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE------------------IV-------TTIPTIGFNVETVEYKNVSFTVWDVG 68 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~------------------~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~ 68 (180)
.+.-||+|+|+.++|||||..+|+... .. +...|+......+.+++..+.++|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 456799999999999999999996311 01 11225566677888899999999999
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
|+..|..-....++-+|++|+|+|+...-.-+...-| ..... .++|.++++||+|...
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchh
Confidence 9999999999999999999999999865333333333 33322 4789999999999865
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.73 E-value=2.3e-18 Score=125.06 Aligned_cols=131 Identities=19% Similarity=0.118 Sum_probs=100.5
Q ss_pred HHHHHhhcCCc--cccccccceeEEEEEE-cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChh-hHHHHHHHH
Q 030289 31 TILYKLKLGEI--VTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDEL 106 (180)
Q Consensus 31 tli~~l~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~ 106 (180)
+|++++..+.+ ..+.||++..+. +.. .+.++.+||+ +++++.+++.+++++|++++|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 68888887774 467799995443 333 2237999999 8999999999999999999999999987 678888888
Q ss_pred HHHhcccccCCCeEEEEEecCCCCCCCCH---hHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 107 HRMLSEDELREAVLLVFANKQDLPNAMSV---SEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 107 ~~~~~~~~~~~~~iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
..+.. .++|+++|+||+|+.++... .++.+... .. .++++|||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76532 47899999999999764332 22222222 11 57999999999999999988754
No 194
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=112.06 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=113.1
Q ss_pred hhhcccCccEEEEEcCC-CCChHHHHHHhhcCC-cc--cccc-----ccc--eeE-----EEEEE-----c---------
Q 030289 9 KMLFARKEMRILMVGLD-AAGKTTILYKLKLGE-IV--TTIP-----TIG--FNV-----ETVEY-----K--------- 58 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~-~~GKStli~~l~~~~-~~--~~~~-----t~~--~~~-----~~~~~-----~--------- 58 (180)
++..+....+++++||. ..=..+|+.++.... .. ...+ .+| +.+ ..+++ .
T Consensus 9 ~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~ 88 (227)
T 3l82_B 9 HSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRAR 88 (227)
T ss_dssp SCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC---------
T ss_pred HHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhh
Confidence 67788999999999984 334558888887655 11 1111 111 111 11221 0
Q ss_pred ------CeEEEEEEcC------CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHH---HHHhcccc-cCCCeEEE
Q 030289 59 ------NVSFTVWDVG------GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDEL---HRMLSEDE-LREAVLLV 122 (180)
Q Consensus 59 ------~~~~~i~D~~------G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~~iii 122 (180)
--++-....| |+..++..|+.|+.++|++|||+|++|.+.++ ....+ ..++.... ..+.|++|
T Consensus 89 ~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLV 167 (227)
T 3l82_B 89 EEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLV 167 (227)
T ss_dssp ----------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEE
T ss_pred hhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEE
Confidence 0123344444 78899999999999999999999999876554 44443 33443322 36899999
Q ss_pred EEecC-CCCCCCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 123 FANKQ-DLPNAMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 123 v~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
++||. |++......++.+.+++... .+.+.+..|||.+|+|+.+.++|+.+.+..+
T Consensus 168 lANKqqDlp~Ams~~EI~e~L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 168 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp EEEESSTTSCBCCHHHHHHHTTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred EeCCCcCccCCCCHHHHHHHcCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 99995 78888888999999998776 4789999999999999999999999988765
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.72 E-value=1.5e-17 Score=135.07 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=86.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcCC------------cc-------ccccccceeEEEEEEc---------------
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLGE------------IV-------TTIPTIGFNVETVEYK--------------- 58 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~--------------- 58 (180)
+++..||+|+|+.++|||||+++|+... .. ....|+......+.+.
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641 11 1122444444444443
Q ss_pred -CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC
Q 030289 59 -NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 59 -~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~ 130 (180)
+..+.+|||||+..|...+..+++.+|++++|+|+++..+.+....|.... ..++|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-----GERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-----HTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----HcCCCeEEEEECCCcc
Confidence 688999999999999999999999999999999999877766655454322 2468999999999976
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=128.87 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=75.5
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcc-cc--------ccccceeEEEEEE----cCeEEEEEEcCCCCCCh----
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TT--------IPTIGFNVETVEY----KNVSFTVWDVGGQDKIR---- 74 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~--------~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~---- 74 (180)
...-.++|+++|++|||||||+|.|++.... .. .+|.......+.. ....+++||++|.....
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 4455789999999999999999999976632 11 1233222211111 23478999999976531
Q ss_pred ---hh------------------HHhhccccCEEEEEEECCCh-hhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 75 ---PL------------------WRHYFQNTHGLIFVVDSNDR-ERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 75 ---~~------------------~~~~~~~~~~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.+ .+.++.++++.+++|..... .++.... .|+..+. .++|+++|+||+|+.+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCcc
Confidence 11 11233444443444443322 2343433 4555542 3689999999999876
Q ss_pred CCCHhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHh
Q 030289 132 AMSVSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
......+... ....+...+++++++|++++.++++++..+.+.+
T Consensus 182 ~~ev~~~k~~-i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 182 PEECQQFKKQ-IMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHH-HHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHH-HHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 4333222111 1122233467799999999999999888777654
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=121.98 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=87.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC------C--ccccccccc---------------------eeE------EEE-----
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG------E--IVTTIPTIG---------------------FNV------ETV----- 55 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~~t~~---------------------~~~------~~~----- 55 (180)
...|+|+|++|||||||+|+|.+. + .....|+.. ... ..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 688999999999999999999851 1 111111100 000 000
Q ss_pred ---------EEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEec
Q 030289 56 ---------EYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANK 126 (180)
Q Consensus 56 ---------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK 126 (180)
...+..+.++||+|.... .......+|++++|+|+.+.+..+.... .+ ...|.++|+||
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK 221 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTK 221 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECC
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEee
Confidence 124568899999995322 2344678999999999976543221111 11 23577999999
Q ss_pred CCCCCCCC----HhHHHhHhCCCcc--CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 127 QDLPNAMS----VSEVTDKLGLHSL--RQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 127 ~D~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+|+.+... ..++...+..... .....+++.+||++|.|+++++++|.+.+.
T Consensus 222 ~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 222 SDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99864211 1122222221111 111357899999999999999999988653
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.70 E-value=8.5e-18 Score=116.85 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=92.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-------cccccc----------ceeEEEEE------------------Ec
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-------TTIPTI----------GFNVETVE------------------YK 58 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-------~~~~t~----------~~~~~~~~------------------~~ 58 (180)
.+..+|+++|.+|||||||+++|...... ...+.. +.....+. ..
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 45679999999999999999999854210 000100 11111111 13
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CCHh
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MSVS 136 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~~~ 136 (180)
+..+.+|||+|+.... ..+....+.+++|+|+.+... ....+... .+.|.++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 4578999999952111 111135788999999875432 11111111 24678999999998642 3444
Q ss_pred HHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 137 EVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
++...+... ...++++++||++|.|++++++++.+.+.+
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 443332111 124689999999999999999999987754
No 199
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.4e-15 Score=112.17 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC-ccccc--cccceeEEEEEEcC-----------------eEEEEEEcCCCCCChh
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE-IVTTI--PTIGFNVETVEYKN-----------------VSFTVWDVGGQDKIRP 75 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~-~~~~~--~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~ 75 (180)
.++|+++|.+|||||||+|+|++.. ..... .|++.....+.+.+ ..+.+|||||..++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3689999999999999999999876 22222 25565555555533 6899999999887532
Q ss_pred ----h---HHhhccccCEEEEEEECCC
Q 030289 76 ----L---WRHYFQNTHGLIFVVDSND 95 (180)
Q Consensus 76 ----~---~~~~~~~~~~~i~v~d~~~ 95 (180)
+ ...+++++|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 2 3345789999999999975
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.67 E-value=5.7e-17 Score=115.50 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=68.4
Q ss_pred eEEEEEEcCCCCCChhhH------HhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCC
Q 030289 60 VSFTVWDVGGQDKIRPLW------RHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAM 133 (180)
Q Consensus 60 ~~~~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~ 133 (180)
+++.+|||||........ ...+.. +++++++|+.......................+.|+++|+||+|+.+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 589999999976543221 124455 8888899875432222221111111111112367899999999987643
Q ss_pred CHhHHHhHhCC------C-----------------ccC--CcceEEEEeeccCCCChHHHHHHHHHHhhh
Q 030289 134 SVSEVTDKLGL------H-----------------SLR--QRRWYIQAACATSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 134 ~~~~~~~~~~~------~-----------------~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 178 (180)
..+++...+.. . .+. ....+++++||+++.|++++++++.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22211111100 0 000 112368999999999999999999987754
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.67 E-value=1.6e-16 Score=117.28 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=66.9
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHh-
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVS- 136 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~- 136 (180)
.+.++.+|||||...... .....+|++++|+|+...+.++.+.. ...+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---------~~~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---------GLMEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---------HHHHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---------hhhcccCEEEEECCCCCChHHHHH
Confidence 367899999999764432 24588999999999875433211110 01135789999999997632222
Q ss_pred ---HHHhHhCCCcc--CCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 137 ---EVTDKLGLHSL--RQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 137 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
++...+..... .....+++++||++|.|++++++++.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221111000 111347899999999999999999988654
No 202
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=110.21 Aligned_cols=111 Identities=23% Similarity=0.367 Sum_probs=88.7
Q ss_pred cCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHH---HHhcccc-cCCCeEEEEEec-CCCCCCCCHhHHHhH
Q 030289 67 VGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELH---RMLSEDE-LREAVLLVFANK-QDLPNAMSVSEVTDK 141 (180)
Q Consensus 67 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~~iiiv~nK-~D~~~~~~~~~~~~~ 141 (180)
.+||..++..|+.|+.++|++|||+|++|.+.++ ....+. .++.... ..+.|++|++|| .|++......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578999999999999999999999999987654 333222 3333322 368999999997 589888888999999
Q ss_pred hCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 142 LGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 142 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
+++... .+.+.+..|||.+|+|+.|.++|+.+.+..+
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 988776 4789999999999999999999999988665
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.64 E-value=2.2e-15 Score=120.19 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=96.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-c-ccccccc------------------------------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-V-TTIPTIG------------------------------------------ 49 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~-~~~~t~~------------------------------------------ 49 (180)
....+|+|+|.+++|||||+|+|++..+ + ...+++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 5678999999999999999999998663 1 1111110
Q ss_pred ------ee----EEEEEE-cCeEEEEEEcCCCCC-------------ChhhHHhhc-cccCEEEEEEECCChhhHHHHHH
Q 030289 50 ------FN----VETVEY-KNVSFTVWDVGGQDK-------------IRPLWRHYF-QNTHGLIFVVDSNDRERIGEAKD 104 (180)
Q Consensus 50 ------~~----~~~~~~-~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~ 104 (180)
+. ...+.. ....+.++||||-.. .......++ ..+|++++|+|+++....+....
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00 011111 234688999999543 122344444 46899999999976422222222
Q ss_pred HHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 105 ELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 105 ~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
.+..+ . ..+.|+++|+||+|+.+... ...+... ..........+++.+||++|.|++++++.+.+
T Consensus 209 ll~~L-~---~~g~pvIlVlNKiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHH-C---TTCSSEEEEEECTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHH-H---hcCCCEEEEEeCcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 33333 2 24689999999999976433 2222211 11111112347899999999999999999886
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.63 E-value=2.5e-16 Score=124.66 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=109.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC--c------------ccc-------ccccceeEEEEEEcCeEEEEEEcCCCCCCh
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE--I------------VTT-------IPTIGFNVETVEYKNVSFTVWDVGGQDKIR 74 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~--~------------~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 74 (180)
.-||+|+|+.++|||||..+|+... . ..+ ..|+......+.+++..+.++|||||..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 4589999999999999999996311 1 011 124445555667788999999999999999
Q ss_pred hhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCc-----
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHS----- 146 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~----- 146 (180)
.-....++-+|++++|+|+...-.-+. ...+..... .++|.++++||+|.....- .+++.+.++...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 999999999999999999975422222 233333322 3678899999999765321 222322222110
Q ss_pred ---------------------------------------------------cCCcceEEEEeeccCCCChHHHHHHHHHH
Q 030289 147 ---------------------------------------------------LRQRRWYIQAACATSGQGLYEGLDWLSSN 175 (180)
Q Consensus 147 ---------------------------------------------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 175 (180)
....-.|++..||+++.||+.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 00112478899999999999999999876
Q ss_pred hh
Q 030289 176 VS 177 (180)
Q Consensus 176 ~~ 177 (180)
+.
T Consensus 237 ~p 238 (638)
T 3j25_A 237 FY 238 (638)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 205
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.60 E-value=6.2e-15 Score=109.38 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=80.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEEcCeEEEEEEcCCCCCC-------hhhHHhhccccCE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEYKNVSFTVWDVGGQDKI-------RPLWRHYFQNTHG 86 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ 86 (180)
.+|+++|.|+||||||+|+|++.. .... ..|.+.....+.+.+.++.++||||-... .......++.+|+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~ 152 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNL 152 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSE
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCc
Confidence 479999999999999999999876 2222 34788888999999999999999994322 1123345678999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289 87 LIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 87 ~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
+++|+|++++. ..+.+...+..+-. ...+.|.++++||.|.
T Consensus 153 il~vvD~~~p~~~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 153 LFIILDVNKPLHHKQIIEKELEGVGI--RLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHTTE--EETCCCCCEEEEECSS
T ss_pred cccccccCccHHHHHHHHHHHHHhhH--hhccCChhhhhhHhhh
Confidence 99999998763 22333333333211 2346778899999995
No 206
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.59 E-value=1.9e-14 Score=106.77 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC-cccc--ccccceeEEEEEE---------------------cCeEEEEEEcCCCCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE-IVTT--IPTIGFNVETVEY---------------------KNVSFTVWDVGGQDK 72 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~-~~~~--~~t~~~~~~~~~~---------------------~~~~~~i~D~~G~~~ 72 (180)
++|+++|++|||||||+|+|++.. .... ..|+..+...+.. .+..+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 689999999999999999998653 1111 1244444433332 246799999999765
Q ss_pred Ch-------hhHHhhccccCEEEEEEECCC
Q 030289 73 IR-------PLWRHYFQNTHGLIFVVDSND 95 (180)
Q Consensus 73 ~~-------~~~~~~~~~~~~~i~v~d~~~ 95 (180)
.. ......++++|++++|+|+.+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223446789999999999975
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=5.6e-14 Score=112.64 Aligned_cols=113 Identities=18% Similarity=0.089 Sum_probs=79.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC--------------ccc-------cccccceeEEEEEEc-------CeEEEEE
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE--------------IVT-------TIPTIGFNVETVEYK-------NVSFTVW 65 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~--------------~~~-------~~~t~~~~~~~~~~~-------~~~~~i~ 65 (180)
++.-||+|+|+.++|||||..+|+... ... ...|+.....++.+. ++.+.++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456689999999999999999996321 000 111333334444442 5889999
Q ss_pred EcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 66 DVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 66 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
|||||..|..-....++-+|++++|+|+...-..+ ....+..... .++|.++++||+|...
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEccccccC
Confidence 99999999999999999999999999997543222 2233333322 4789999999999764
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.56 E-value=1.2e-16 Score=111.36 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=83.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCcc-ccccccceeE----------------EEEEEc------------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV----------------ETVEYK------------------ 58 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~t~~~~~----------------~~~~~~------------------ 58 (180)
.+.++|+++|.+|||||||+++|+..... .+.++++..+ ..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 45789999999999999999999865322 2223333221 111100
Q ss_pred --CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC--CC
Q 030289 59 --NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA--MS 134 (180)
Q Consensus 59 --~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~--~~ 134 (180)
+..+.++|++|.-... ..+-...+..+.++|........ .... .. ...|.++|+||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHP-GI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCH-HH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhh-hH------hhcCCEEEEeccccCchhHHH
Confidence 1145555555521110 01111233445555542111000 0000 00 13567999999998653 23
Q ss_pred HhHHHhHhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhhhc
Q 030289 135 VSEVTDKLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVSAK 179 (180)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 179 (180)
.++....... ...+.+++++||++|.|++++|+++.+.+.+.
T Consensus 184 ~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 4433322211 01245899999999999999999999887653
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=3.3e-14 Score=104.66 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=88.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc------CC--ccccccc--------------cc-----eeEEE------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL------GE--IVTTIPT--------------IG-----FNVET------------ 54 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~------~~--~~~~~~t--------------~~-----~~~~~------------ 54 (180)
.+...++++|++|||||||++.+.+ ++ .....++ ++ .....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 4567899999999999999999973 32 1110110 00 00000
Q ss_pred ----------EEEcCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEE
Q 030289 55 ----------VEYKNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFA 124 (180)
Q Consensus 55 ----------~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~ 124 (180)
+...+.++.++||||...-.. .....+|.+++++|+...+..+.+...+. ..+.++++
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvl 200 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAV 200 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTHH---------HHCSEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEE
Confidence 112477899999999654332 23468999999999864432221111111 23457777
Q ss_pred ecCCCCCCCC-----HhHHHhHhCCCccC--CcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 125 NKQDLPNAMS-----VSEVTDKLGLHSLR--QRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 125 nK~D~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
||+|+..... ..++.......... ....+++.+|++++.|++++++.+.+...
T Consensus 201 NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999754221 12222222221100 11246888999999999999999987654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.43 E-value=3.4e-13 Score=100.52 Aligned_cols=83 Identities=20% Similarity=0.236 Sum_probs=53.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc-ccc--ccccceeEEEEEEc-----------------CeEEEEEEcCCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNVETVEYK-----------------NVSFTVWDVGGQDKI 73 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~-~~~--~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~ 73 (180)
...++|+++|++|||||||+|+|++... ... ..|.++....+.+. +..+.+|||||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 4578999999999999999999998752 222 23556666665542 346999999997764
Q ss_pred hh-------hHHhhccccCEEEEEEECCCh
Q 030289 74 RP-------LWRHYFQNTHGLIFVVDSNDR 96 (180)
Q Consensus 74 ~~-------~~~~~~~~~~~~i~v~d~~~~ 96 (180)
.. .+..+++++|++++|+|+.+.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 33 456778999999999998753
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.32 E-value=2e-12 Score=93.84 Aligned_cols=96 Identities=20% Similarity=0.174 Sum_probs=73.6
Q ss_pred CCCChhhHHhhccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCC
Q 030289 70 QDKIRPLWRHYFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLH 145 (180)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~ 145 (180)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.++.. .+++.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~---- 137 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISI---- 137 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHH----
Confidence 7778888888999999999999999886 88888888875532 5789999999999976431 1222211
Q ss_pred ccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 146 SLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 146 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
....+.+++++||++|.|+++++..+..
T Consensus 138 -~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 138 -YRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp -HHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred -HHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 1223568999999999999999987654
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=1.4e-10 Score=86.63 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=60.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCc--ccccc--ccceeEEEEEEcC-----------------eEEEEEEcCCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------VSFTVWDVGGQDK 72 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~--~~~~~--t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~ 72 (180)
....+++++|++|||||||+|+|++... ....| |+.+....+.+.+ ..+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4468999999999999999999998652 22333 5566666666643 5789999999332
Q ss_pred -------ChhhHHhhccccCEEEEEEECCC
Q 030289 73 -------IRPLWRHYFQNTHGLIFVVDSND 95 (180)
Q Consensus 73 -------~~~~~~~~~~~~~~~i~v~d~~~ 95 (180)
+.......++.+|++++|+|+.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33345566789999999999853
No 213
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=7.9e-11 Score=88.60 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccc-----cccccceeEEEEEEc--C--eEEEEEEcCCCCCC--------------
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYK--N--VSFTVWDVGGQDKI-------------- 73 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~-----~~~t~~~~~~~~~~~--~--~~~~i~D~~G~~~~-------------- 73 (180)
++++|+|++|+|||||+|.|++..... ..+........+... . ..+.++|++|-...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 569999999999999999998764111 011111111111111 1 36899999985432
Q ss_pred hhhHHhhc-------------cc--cCE-EEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhH
Q 030289 74 RPLWRHYF-------------QN--THG-LIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSE 137 (180)
Q Consensus 74 ~~~~~~~~-------------~~--~~~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~ 137 (180)
...+..++ .+ .|+ ++++.|... .+......+...+. .+.|+++|.||+|..++.....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~--~l~~~Dieilk~L~----~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH--SLKSLDLVTMKKLD----SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC--CCCHHHHHHHHHHh----hCCCEEEEEcchhccchHHHHH
Confidence 11111111 11 234 444555542 22233322333322 4789999999999887544444
Q ss_pred HHhHhCCCccCCcceEEEEeec
Q 030289 138 VTDKLGLHSLRQRRWYIQAACA 159 (180)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~Sa 159 (180)
+...+.. .+...+++++.+|.
T Consensus 197 l~~~I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 197 FKIKITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHH-HHBTTBCCCCCCC-
T ss_pred HHHHHHH-HHHHcCCcEEecCC
Confidence 3333221 12334566666664
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.15 E-value=1e-09 Score=84.50 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=87.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhh------cCC--cccc---ccc-----------cceeEEEE----------------
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLK------LGE--IVTT---IPT-----------IGFNVETV---------------- 55 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~------~~~--~~~~---~~t-----------~~~~~~~~---------------- 55 (180)
.+...|+|+|++||||||++++|. +.+ .... .+. .++.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 333 1111 110 01111110
Q ss_pred -EEcCeEEEEEEcCCCCCChh-hHHh---h--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeE-EEEEecC
Q 030289 56 -EYKNVSFTVWDVGGQDKIRP-LWRH---Y--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVL-LVFANKQ 127 (180)
Q Consensus 56 -~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i-iiv~nK~ 127 (180)
...++++.|+||||...... .... . ...+|.+++|+|+......... ...+.. ..|+ .+|+||.
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~-----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD-----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH-----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh-----hcCceEEEEeCC
Confidence 11567899999999764321 1111 1 2278999999999764321111 122211 1454 8899999
Q ss_pred CCCCCCC-HhHHHhHhCCCc--------cCCc--ceEEEEeeccCCCC-hHHHHHHHHHH
Q 030289 128 DLPNAMS-VSEVTDKLGLHS--------LRQR--RWYIQAACATSGQG-LYEGLDWLSSN 175 (180)
Q Consensus 128 D~~~~~~-~~~~~~~~~~~~--------~~~~--~~~~~~~Sa~~~~~-i~~~~~~l~~~ 175 (180)
|...... .-.+....+.+. .... ..+.+.+|+..|.| ++++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9875433 112333433321 0000 01235689999999 99999998765
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.11 E-value=1.9e-11 Score=90.99 Aligned_cols=112 Identities=11% Similarity=0.151 Sum_probs=67.4
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC-----C--ccccccccceeEEEEEEcCeEEEEEEcCCCCCCh--------hhHHh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG-----E--IVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWRH 79 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~-----~--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~ 79 (180)
...+|+++|.+|+|||||+|+|++. . .....|.+......+... ..+.++||||-.... .....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3568999999999999999999975 2 222233222223333332 248999999943221 11222
Q ss_pred hc--cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 80 YF--QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 80 ~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
++ +..+.++++++....--+..+.. +......+.|+++++||.|....
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHR 289 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCccccc
Confidence 32 56799999998842210011111 11122356899999999998653
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.03 E-value=1.1e-10 Score=86.79 Aligned_cols=100 Identities=19% Similarity=0.105 Sum_probs=66.8
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCcc
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSL 147 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~ 147 (180)
.++.|+..++.+.+.++++++|+|+.++. ..|...+... ..+.|+++|+||+|+.+... .+...+.+. ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~-~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMR-YSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHH-HHH
Confidence 35678888999999999999999998753 2232222221 23789999999999976432 222211100 011
Q ss_pred CCcce---EEEEeeccCCCChHHHHHHHHHHh
Q 030289 148 RQRRW---YIQAACATSGQGLYEGLDWLSSNV 176 (180)
Q Consensus 148 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~ 176 (180)
+..+. .++++||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 12233 789999999999999999997654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.03 E-value=8.5e-11 Score=87.48 Aligned_cols=114 Identities=8% Similarity=0.107 Sum_probs=65.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC------c--cccccccceeEEEEEEcCeEEEEEEcCCCCCCh--------hhHH
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE------I--VTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWR 78 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~------~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~ 78 (180)
...+|+++|.+|+|||||+|+|++.. . ....|.+......+... ..+.++||||-.... ....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-EESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-SSCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-CCeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 45789999999999999999998752 1 11222111222223322 238999999943221 1122
Q ss_pred hh--ccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC
Q 030289 79 HY--FQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS 134 (180)
Q Consensus 79 ~~--~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~ 134 (180)
.+ .+..+.++++++....--+..+.. +......+.|+++++||+|......
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCcccccccc
Confidence 22 245788899998742110011100 1112234689999999999876433
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.01 E-value=2.4e-10 Score=81.58 Aligned_cols=113 Identities=15% Similarity=0.275 Sum_probs=61.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCccccc----------cccceeEEEEEE----cCeEEEEEEcCCCCCC-------h
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTI----------PTIGFNVETVEY----KNVSFTVWDVGGQDKI-------R 74 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~~~~~----------~t~~~~~~~~~~----~~~~~~i~D~~G~~~~-------~ 74 (180)
.|+++++|++|+|||||+|.|++....... .+.......+.. -...++++|++|-... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999863311110 111111111111 1237899999983211 0
Q ss_pred hh-------HHhh--------------ccccCEEEEEEECCChhhHHHHH-HHHHHHhcccccCCCeEEEEEecCCCCCC
Q 030289 75 PL-------WRHY--------------FQNTHGLIFVVDSNDRERIGEAK-DELHRMLSEDELREAVLLVFANKQDLPNA 132 (180)
Q Consensus 75 ~~-------~~~~--------------~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~iiiv~nK~D~~~~ 132 (180)
.. .... +.++++.++++|... ..+.... ..+..+ .. ..++++|.+|+|..+.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~~l~~L-~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLEFMKHL-SK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHHHHHHH-HT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHHHHHHH-Hh----cCcEEEEEeccccCCH
Confidence 11 0011 113588889998542 1112222 223333 22 2789999999998774
Q ss_pred CC
Q 030289 133 MS 134 (180)
Q Consensus 133 ~~ 134 (180)
.+
T Consensus 156 ~e 157 (270)
T 3sop_A 156 EE 157 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=3e-10 Score=84.56 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=67.1
Q ss_pred CCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC-HhHHHhHhCCCcc
Q 030289 69 GQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS-VSEVTDKLGLHSL 147 (180)
Q Consensus 69 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~-~~~~~~~~~~~~~ 147 (180)
.++.|++..+.++++++++++|+|+.++.+ .....+..+ ..+.|+++|+||+|+.+... .+.+.+.+. ..+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~-----l~~~piilV~NK~DLl~~~~~~~~~~~~l~-~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRF-----AADNPILLVGNKADLLPRSVKYPKLLRWMR-RMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHH-----CTTSCEEEEEECGGGSCTTCCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHH-----hCCCCEEEEEEChhcCCCccCHHHHHHHHH-HHH
Confidence 477888999999999999999999998653 111112222 13689999999999976432 222221110 011
Q ss_pred CCcce---EEEEeeccCCCChHHHHHHHHHHhh
Q 030289 148 RQRRW---YIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 148 ~~~~~---~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
+..+. .++.+||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 12222 6899999999999999999976543
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.90 E-value=7.1e-09 Score=78.00 Aligned_cols=158 Identities=13% Similarity=0.152 Sum_probs=83.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccc-cccc-e----eEEEEEEcC-eEEEEEEcCCCCCC----hhh-HHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-F----NVETVEYKN-VSFTVWDVGGQDKI----RPL-WRHYF 81 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~-~t~~-~----~~~~~~~~~-~~~~i~D~~G~~~~----~~~-~~~~~ 81 (180)
.....++|+|++|||||||+|.+.+-...... .+.+ . ....++... ..+.+||++|-... ... ....+
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 34568999999999999999999874311111 1110 0 011111121 25899999984321 111 11122
Q ss_pred cccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCC---------CCCCHhHHHhHhCCCc---cCC
Q 030289 82 QNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLP---------NAMSVSEVTDKLGLHS---LRQ 149 (180)
Q Consensus 82 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~---------~~~~~~~~~~~~~~~~---~~~ 149 (180)
...+..++ ++..... ..+..+...+.. .+.|+++|.||.|+. +.....++.+.+.... ...
T Consensus 147 ~~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33455554 6654211 111111112111 367999999999853 1222222222211110 000
Q ss_pred ---cceEEEEeec--cCCCChHHHHHHHHHHhhh
Q 030289 150 ---RRWYIQAACA--TSGQGLYEGLDWLSSNVSA 178 (180)
Q Consensus 150 ---~~~~~~~~Sa--~~~~~i~~~~~~l~~~~~~ 178 (180)
....++.+|+ .++.|++++.+.+.+.+.+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1125788999 5666799999999887754
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.87 E-value=9.5e-10 Score=78.15 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeE--EEEEEcCeEEEEEEcCCCCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNVSFTVWDVGGQDK 72 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~ 72 (180)
++++++|.+|+|||||+|+|.+.......++.+... ..+. .+..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~-~~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS-LENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE-CTTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE-eCCCEEEEECCCccc
Confidence 799999999999999999999776433333333211 1222 234789999999553
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=3.2e-09 Score=76.21 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=67.2
Q ss_pred EEEcCCCC-CChhhHHhhccccCEEEEEEECCChhhHH--HHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHh
Q 030289 64 VWDVGGQD-KIRPLWRHYFQNTHGLIFVVDSNDRERIG--EAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTD 140 (180)
Q Consensus 64 i~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~ 140 (180)
+-..||+. +........+.++|+++.|+|+.++.+.. .+.++ + .+.|.++|+||+|+.+....+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l-----~~kp~ilVlNK~DL~~~~~~~~~~~ 73 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI----L-----KNKPRIMLLNKADKADAAVTQQWKE 73 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH----C-----SSSCEEEEEECGGGSCHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH----H-----CCCCEEEEEECcccCCHHHHHHHHH
Confidence 34578875 34455677889999999999998875543 23332 2 4688999999999986433333333
Q ss_pred HhCCCccCCcceEEEEeeccCCCChHHHHHHHHHHhh
Q 030289 141 KLGLHSLRQRRWYIQAACATSGQGLYEGLDWLSSNVS 177 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 177 (180)
.+. ..+.+++++||.++.|++++++.+.+.+.
T Consensus 74 ~~~-----~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 74 HFE-----NQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHH-----TTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHH-----hcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 321 23457899999999999999998877664
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=2.7e-09 Score=76.61 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=36.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCCccccc--c--ccceeEEEEEEcCeEEEEEEcCCCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNVSFTVWDVGGQD 71 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~D~~G~~ 71 (180)
...++++++|.+|||||||+|+|.+....... | |.... .+.. +..+.+|||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 46789999999999999999999977632222 2 22221 2222 3478999999954
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.72 E-value=2.3e-08 Score=75.67 Aligned_cols=110 Identities=23% Similarity=0.251 Sum_probs=62.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc------CC--ccc---ccc-----------ccceeEEEE-----------------
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL------GE--IVT---TIP-----------TIGFNVETV----------------- 55 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~------~~--~~~---~~~-----------t~~~~~~~~----------------- 55 (180)
+...|+++|++|+||||++..|.. .+ ... +.+ ..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357889999999999999988863 22 000 101 111111100
Q ss_pred EEcCeEEEEEEcCCCCCChhhH-H-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCC
Q 030289 56 EYKNVSFTVWDVGGQDKIRPLW-R-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDL 129 (180)
Q Consensus 56 ~~~~~~~~i~D~~G~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~ 129 (180)
...++.+.++||+|........ . .....+|.+++|+|+.......... ..+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence 0024789999999955432211 1 1223579999999987543322222 222211 2345789999998
Q ss_pred CC
Q 030289 130 PN 131 (180)
Q Consensus 130 ~~ 131 (180)
..
T Consensus 252 ~~ 253 (443)
T 3dm5_A 252 SA 253 (443)
T ss_dssp CS
T ss_pred cc
Confidence 75
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.63 E-value=6.7e-08 Score=75.72 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=41.0
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcCCcc-cccc-----ccceeEEEEE---EcCeEEEEEEcCCCC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIP-----TIGFNVETVE---YKNVSFTVWDVGGQD 71 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~~~~-~~~~-----t~~~~~~~~~---~~~~~~~i~D~~G~~ 71 (180)
...+..+|+|+|.+|+|||||+|+|++.... .... |.+....... ..+..+.++||||-.
T Consensus 34 i~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 3566788999999999999999999987621 2222 2222211111 246789999999944
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.54 E-value=1.2e-07 Score=71.80 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=62.4
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC------C--ccccc--------------------------cccce-eE--EEE-EE
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG------E--IVTTI--------------------------PTIGF-NV--ETV-EY 57 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~------~--~~~~~--------------------------~t~~~-~~--~~~-~~ 57 (180)
...|+++|++|+||||+++.|... + ..... .+.+. .. ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999998641 1 00000 00000 00 000 01
Q ss_pred cCeEEEEEEcCCCCCChhhHH----h--hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCC-e-EEEEEecCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPLWR----H--YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREA-V-LLVFANKQDL 129 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~----~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-iiiv~nK~D~ 129 (180)
.++.+.++||||......... . ....+|.+++|+|+..... .......+. ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~-----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK-----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH-----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh-----hcccCCeEEEEeCCCC
Confidence 567899999999765422111 1 1225899999999864421 112222221 234 4 7899999998
Q ss_pred CC
Q 030289 130 PN 131 (180)
Q Consensus 130 ~~ 131 (180)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.51 E-value=7.3e-08 Score=76.19 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.++|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998754
No 228
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.35 E-value=2.4e-08 Score=76.66 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=54.7
Q ss_pred hcccCccEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEE----cCeEEEEEEcCCCCC--ChhhH-------
Q 030289 11 LFARKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDK--IRPLW------- 77 (180)
Q Consensus 11 ~~~~~~~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~--~~~~~------- 77 (180)
.+...+.+|+++|.+|+||||+.++|...-.....++..+....+.. ......+||..|... .+..+
T Consensus 34 ~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~ 113 (469)
T 1bif_A 34 CMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND 113 (469)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999998754322222222221111101 113346788888632 22222
Q ss_pred -HhhccccCEEEEEEECCChhhHHHHHHHHH
Q 030289 78 -RHYFQNTHGLIFVVDSNDRERIGEAKDELH 107 (180)
Q Consensus 78 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 107 (180)
..++...++.++|+|.++.. .+.-..|..
T Consensus 114 ~~~~l~~~~G~~vV~D~tn~~-~~~R~~~~~ 143 (469)
T 1bif_A 114 VRKFLSEEGGHVAVFDATNTT-RERRAMIFN 143 (469)
T ss_dssp HHHHHHTTCCSEEEEESCCCS-HHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCCC-HHHHHHHHH
Confidence 45566678889999998763 344444433
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.31 E-value=4.7e-06 Score=63.09 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=62.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc------CC--ccc---ccc-----------ccceeEEEE-----------------
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL------GE--IVT---TIP-----------TIGFNVETV----------------- 55 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~------~~--~~~---~~~-----------t~~~~~~~~----------------- 55 (180)
+...|+++|++||||||++..|.. .+ ... +.+ ..+......
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 356788999999999999988862 22 000 000 111111100
Q ss_pred EEcCeEEEEEEcCCCCC--Chh-h---HHh--hccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecC
Q 030289 56 EYKNVSFTVWDVGGQDK--IRP-L---WRH--YFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQ 127 (180)
Q Consensus 56 ~~~~~~~~i~D~~G~~~--~~~-~---~~~--~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~ 127 (180)
...+..+.++||||... ... . ... .....+.+++|+|+............+... -.+..+|+||.
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl 248 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM 248 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence 00257899999999644 211 1 111 112468999999997543322333333322 13467899999
Q ss_pred CCCC
Q 030289 128 DLPN 131 (180)
Q Consensus 128 D~~~ 131 (180)
|...
T Consensus 249 D~~a 252 (433)
T 3kl4_A 249 DGTA 252 (433)
T ss_dssp GGCS
T ss_pred cccc
Confidence 9764
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.31 E-value=8.9e-07 Score=63.97 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=40.5
Q ss_pred cCeEEEEEEcCCCCC--Chh-hHH-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCC
Q 030289 58 KNVSFTVWDVGGQDK--IRP-LWR-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQD 128 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D 128 (180)
.++.+.++||||... ... ... .....+|.+++|+|+.... ........+. ...+ ..+|+||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~-----~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFN-----QASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHH-----HTCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHH-----hhCCCCEEEEeCCC
Confidence 457899999999776 422 221 1344689999999986432 1222222221 1234 678899999
Q ss_pred CCC
Q 030289 129 LPN 131 (180)
Q Consensus 129 ~~~ 131 (180)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 764
No 231
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.14 E-value=5e-07 Score=64.13 Aligned_cols=93 Identities=6% Similarity=0.013 Sum_probs=59.4
Q ss_pred cCCCCC-ChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCCHhHHHhHhCCC
Q 030289 67 VGGQDK-IRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMSVSEVTDKLGLH 145 (180)
Q Consensus 67 ~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~~~~~~~~~~~~ 145 (180)
.|||.. ........+.++|+++.|+|+.++.+.... .+. + . ++|.++|+||+|+.+....+.+.+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 466553 345567788999999999999877543211 011 1 1 688999999999987433333333221
Q ss_pred ccCCcceEEEEeeccCCCChHHHHHHHHH
Q 030289 146 SLRQRRWYIQAACATSGQGLYEGLDWLSS 174 (180)
Q Consensus 146 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 174 (180)
..+.++ .+||.++.|++++++.+.+
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 223457 9999999999999887644
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.08 E-value=1.9e-05 Score=59.95 Aligned_cols=109 Identities=24% Similarity=0.254 Sum_probs=61.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhh-------cCC--cc---cccc-----------ccceeEEE--------------E---
Q 030289 16 EMRILMVGLDAAGKTTILYKLK-------LGE--IV---TTIP-----------TIGFNVET--------------V--- 55 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~-------~~~--~~---~~~~-----------t~~~~~~~--------------~--- 55 (180)
...|+++|++|+||||++..|. +.+ .. .+.+ ..++.... +
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578899999999999998886 222 10 1001 00111100 0
Q ss_pred EEcCeEEEEEEcCCCCCChh-hHH-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCe-EEEEEecCC
Q 030289 56 EYKNVSFTVWDVGGQDKIRP-LWR-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAV-LLVFANKQD 128 (180)
Q Consensus 56 ~~~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~D 128 (180)
...++.+.++||||...... ... .....++.+++|+|+...... ......+.. ..+ .-+|+||.|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~-----~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE-----ALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH-----HSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc-----cCCCeEEEEecCC
Confidence 01467899999999765422 211 123468899999998743222 122222211 123 346899999
Q ss_pred CCCC
Q 030289 129 LPNA 132 (180)
Q Consensus 129 ~~~~ 132 (180)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7643
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.07 E-value=1.1e-06 Score=63.74 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=58.0
Q ss_pred hhHHhhccccCEEEEEEECCChhh-HHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC----HhHHHhHhCCCccCC
Q 030289 75 PLWRHYFQNTHGLIFVVDSNDRER-IGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS----VSEVTDKLGLHSLRQ 149 (180)
Q Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~----~~~~~~~~~~~~~~~ 149 (180)
.+.+....++|.+++|+|+.++.. ...+..++... +..++|.++|+||+|+.++.. .+++.+.+ ..
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~ 148 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RN 148 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----Hh
Confidence 344457889999999999986543 33333333222 225788999999999987532 23333322 12
Q ss_pred cceEEEEeeccCCCChHHHHHH
Q 030289 150 RRWYIQAACATSGQGLYEGLDW 171 (180)
Q Consensus 150 ~~~~~~~~Sa~~~~~i~~~~~~ 171 (180)
.+.+++.+|+.++.|+++++..
T Consensus 149 ~g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 149 IGYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HTCCEEECCHHHHTTCTTTGGG
T ss_pred CCCeEEEEecCCCCCHHHHHhh
Confidence 3457899999999998877653
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.98 E-value=9.1e-06 Score=59.47 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+.--++++|++||||||+++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456788999999999999998864
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.94 E-value=6.2e-05 Score=50.00 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=47.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCCccccccccceeEEEEEEcCeEEEEEEcCCCCCChhhHHhh----ccccCEEEEEEE
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWRHY----FQNTHGLIFVVD 92 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~~~~i~v~d 92 (180)
.-++|+|++|+|||||+++|...- +..+.....+......+ -+|.+|.+.++.....+ ........++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l-----~~~g~~v~~i~~~~~~~-~id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~ 80 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDM-DVDKPGKDSYELRKAGAAQTIVASQQRWALMTE 80 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-----HHTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc-----cccCCceeEEeeCCCcc-ccCCCCCceEEEEeCCcceeecccchhheeeee
Confidence 457899999999999999998532 11122233344333333 23566655443222111 011112222232
Q ss_pred C--CChhhHHHHHHHHHHH------hcccccCCCeEEEEEecCCCC
Q 030289 93 S--NDRERIGEAKDELHRM------LSEDELREAVLLVFANKQDLP 130 (180)
Q Consensus 93 ~--~~~~~~~~~~~~~~~~------~~~~~~~~~~iiiv~nK~D~~ 130 (180)
. ..+..+..+...+... +........|.+++.+|.+..
T Consensus 81 ~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~~ 126 (174)
T 1np6_A 81 TPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGH 126 (174)
T ss_dssp CSSSCCCCHHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSSC
T ss_pred ccCCchhhHHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccCC
Confidence 1 1224455554332210 111123468999999988754
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.93 E-value=5.2e-06 Score=55.46 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999888753
No 237
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.89 E-value=2.1e-05 Score=59.80 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+-.-|.|+|++++|||||+|+|++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3445567999999999999999985
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=9.9e-06 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.--++|+|++|||||||++.|..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 44689999999999999999975
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.82 E-value=8.7e-06 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.++|+|++|||||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999998875
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.79 E-value=1.4e-05 Score=54.06 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.1
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+..+++.--|+|+||+|||||||++.|...
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 334456677899999999999999999743
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.78 E-value=6.1e-05 Score=55.64 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=52.9
Q ss_pred hccccCEEEEEEECCChh-hHHHHHHHHHHHhcccccCCCeEEEEEecCCCCCCCC---HhHHHhHhCCCccCCcceEEE
Q 030289 80 YFQNTHGLIFVVDSNDRE-RIGEAKDELHRMLSEDELREAVLLVFANKQDLPNAMS---VSEVTDKLGLHSLRQRRWYIQ 155 (180)
Q Consensus 80 ~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 155 (180)
...++|.+++|.+.. +. +...+..++... ...++|.++|+||+|+.++.. .+++...+ ...+.+++
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a----~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGC----ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHH----HHHTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEE
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHH----HhcCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEE
Confidence 357889999886654 43 333333443322 124677899999999987432 22222222 23455799
Q ss_pred EeeccCCCChHHHHHHH
Q 030289 156 AACATSGQGLYEGLDWL 172 (180)
Q Consensus 156 ~~Sa~~~~~i~~~~~~l 172 (180)
.+|+.++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999887654
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.75 E-value=1.3e-05 Score=53.78 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHhhc
Q 030289 19 ILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~ 38 (180)
++++|++|||||||++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999874
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.73 E-value=1.5e-05 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.--++++|++|||||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999988753
No 244
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.73 E-value=0.0004 Score=46.90 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=47.7
Q ss_pred cCeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhccc-ccCCCeEEEEEecCCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSED-ELREAVLLVFANKQDLPN 131 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiiv~nK~D~~~ 131 (180)
..+.+.++|+|+.. .......+..+|.++++...+... ......+..+.... ..++.++.+|+|+.|...
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 35789999999866 445566777899999999875433 45554444443221 134667899999999643
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.72 E-value=1.6e-05 Score=54.88 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.--++|+||+|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346889999999999999998754
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.72 E-value=1.9e-05 Score=53.94 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
......|+|+|++|||||||++.|.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999999988864
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.72 E-value=1.6e-05 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..--++++|++|||||||++.+.+-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445889999999999999988753
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.71 E-value=2.3e-05 Score=53.50 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+.--|+|+||+|||||||++.|...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 44567899999999999999999754
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.71 E-value=1.8e-05 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=18.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.--++++|++|||||||++.+..
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 34578999999999999997553
No 250
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.68 E-value=2.5e-05 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.-.++++|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999999764
No 251
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.68 E-value=2.5e-05 Score=52.96 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=21.6
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+......|+|.|++||||||+.+.|..
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334456899999999999999998864
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.68 E-value=1.9e-05 Score=54.35 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..-.++|+|++|||||||++.+.+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998875
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.67 E-value=2.3e-05 Score=52.64 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHhhcC
Q 030289 19 ILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~ 39 (180)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999743
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.66 E-value=7.1e-05 Score=56.57 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=37.5
Q ss_pred cCeEEEEEEcCCCCCChh-hHH-----hhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 58 KNVSFTVWDVGGQDKIRP-LWR-----HYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 58 ~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
.++.+.++||||...... ... .....+|.+++|+|+.... ........+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 456799999999664422 111 1122588899999986432 222222222111 112466889999754
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.66 E-value=2.4e-05 Score=54.52 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999887544
No 256
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.64 E-value=3.2e-05 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=21.1
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhh
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
+..+...|+|+|++|||||||++.|.
T Consensus 23 ~~~~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ---CCCEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34455789999999999999999988
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.62 E-value=2.9e-05 Score=50.77 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=22.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
...--++++|+.|+|||||++.+.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334468899999999999999887644
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.61 E-value=3.1e-05 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=.++++|++|||||||++.+.+-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999887643
No 259
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.61 E-value=3e-05 Score=57.30 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCCc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGEI 41 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~~ 41 (180)
.-.++|+|++|||||||+|.|.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 44789999999999999999987543
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.58 E-value=4.4e-05 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
....|+++|++||||||+++.|.+.-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35579999999999999999887543
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.58 E-value=3.8e-05 Score=52.41 Aligned_cols=25 Identities=36% Similarity=0.335 Sum_probs=20.9
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+...|+|+|++|||||||++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999988865
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.57 E-value=3.7e-05 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457899999999999999887643
No 263
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.56 E-value=5.3e-05 Score=51.31 Aligned_cols=30 Identities=33% Similarity=0.410 Sum_probs=23.5
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+..+...+.|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344566778999999999999999988863
No 264
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.56 E-value=3.9e-05 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=.++++|++|||||||++.+.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999887643
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.56 E-value=4.1e-05 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=.++++|++|+|||||++.+++-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999887653
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.56 E-value=4e-05 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=-++++|++|||||||++.+.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357899999999999999887643
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.55 E-value=4.2e-05 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3457899999999999999887643
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.55 E-value=5.1e-05 Score=50.73 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988853
No 269
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.55 E-value=4.9e-05 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-|+|+|++||||||+++.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.54 E-value=5.1e-05 Score=49.90 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCChHHHHHHh
Q 030289 17 MRILMVGLDAAGKTTILYKL 36 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l 36 (180)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.54 E-value=4.2e-05 Score=51.28 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.++++|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999974
No 272
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.54 E-value=4.4e-05 Score=53.93 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999887643
No 273
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=4.5e-05 Score=50.25 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|+++|++||||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.52 E-value=4.8e-05 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999887654
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.52 E-value=5.7e-05 Score=49.92 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=21.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+....|+++|++||||||+.+.|..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999988864
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.52 E-value=4.4e-05 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999888753
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.52 E-value=4.9e-05 Score=53.90 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3457899999999999999887643
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=5.1e-05 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.+-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999887643
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.51 E-value=5.1e-05 Score=52.66 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.+-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999887654
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.51 E-value=5.7e-05 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=.++++|++|||||||++.+.+-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999988754
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.51 E-value=5.7e-05 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999887643
No 282
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.50 E-value=6.4e-05 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
....|+++|++||||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988864
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.50 E-value=5.3e-05 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999887643
No 284
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.50 E-value=5.4e-05 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.+-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3357899999999999999887654
No 285
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.50 E-value=3.6e-05 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=16.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~ 37 (180)
..--++++|++|||||||++.|.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999999998
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.48 E-value=5.7e-05 Score=53.13 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=.++++|++|+|||||++.+.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 335789999999999999998874
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=6.4e-05 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 288
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.48 E-value=7.9e-05 Score=49.31 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.47 E-value=6.8e-05 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 290
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.47 E-value=1.8e-05 Score=57.31 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.-.++++|++|||||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4578999999999999999998654
No 291
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.47 E-value=6.8e-05 Score=51.29 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHHHhh
Q 030289 17 MRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~ 37 (180)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.47 E-value=4.5e-05 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=.++++|++|+|||||++.+.+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999988765
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.47 E-value=6.2e-05 Score=53.51 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=.++++|++|||||||++.+.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345789999999999999988875
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.46 E-value=7e-05 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.217 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=.++++|++|+|||||++.+.+-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 346899999999999999988764
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.46 E-value=7.1e-05 Score=53.54 Aligned_cols=25 Identities=40% Similarity=0.515 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999887643
No 296
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.46 E-value=7.4e-05 Score=51.16 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHHHhh
Q 030289 17 MRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~ 37 (180)
++|+|.|++||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.45 E-value=6.6e-05 Score=53.48 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++|+|++|+|||||++.+.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999887643
No 298
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.45 E-value=9.5e-05 Score=49.41 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..+..+|+++|++||||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999988654
No 299
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.45 E-value=6.6e-05 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=.++++|++|||||||++.+.+-.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999887654
No 300
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=6.5e-05 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.-.++++|++|||||||+|.+.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3467899999999999999998654
No 301
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.44 E-value=0.0039 Score=44.92 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCCCCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEE-EEEecCCCCCCCCHhH
Q 030289 59 NVSFTVWDVGGQDKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLL-VFANKQDLPNAMSVSE 137 (180)
Q Consensus 59 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ii-iv~nK~D~~~~~~~~~ 137 (180)
.+.+.++|+|+...... ....+..+|.++++...+ ..++......+..+.......+.+++ +|.|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 47899999988544322 234567899999999764 55566666655555443223456655 899999843 22444
Q ss_pred HHhHhCC
Q 030289 138 VTDKLGL 144 (180)
Q Consensus 138 ~~~~~~~ 144 (180)
+.+.++.
T Consensus 232 ~~~~~g~ 238 (307)
T 3end_A 232 FCKETNF 238 (307)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 5545443
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.44 E-value=6.6e-05 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.-.++++|++|||||||+|.+. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3467899999999999999998 44
No 303
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.44 E-value=8.8e-05 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 304
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.44 E-value=7e-05 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|||||||++.+.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999887643
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.44 E-value=6.6e-05 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...=.++|+|++|||||||++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 4455789999999999999998875
No 306
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.43 E-value=8e-05 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~ 37 (180)
...|+++|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.43 E-value=8.7e-05 Score=50.14 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=22.9
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
++.+...|+|.|++||||||+.+.|...
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4566788999999999999999988754
No 308
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=8.4e-05 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...|++.|++||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999988853
No 309
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.43 E-value=0.00068 Score=43.39 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=23.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.....|++.|++|+|||++.+.+....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 567789999999999999998887543
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.42 E-value=9.5e-05 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~ 37 (180)
..+|+++|++||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.42 E-value=8.5e-05 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988864
No 312
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.42 E-value=9.2e-05 Score=50.32 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...|+|.|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 313
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.42 E-value=7.5e-05 Score=54.01 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+.=.++|+|++|+|||||++.|.+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3456789999999999999988863
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.41 E-value=9.6e-05 Score=50.04 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+...|+++|++||||||+.+.|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988864
No 315
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.41 E-value=9.4e-05 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
++|+|+|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988863
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.41 E-value=8.3e-05 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999998875
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.41 E-value=8.8e-05 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=22.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.....-|+|+|++|||||||++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHh
Confidence 35667899999999999999988875
No 318
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.40 E-value=0.00011 Score=48.87 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...-.+++.|++|+|||||++.+.+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999888643
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.39 E-value=0.0001 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=8.5e-05 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~ 37 (180)
+.--++++|++|||||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568899999999999999876
No 321
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.39 E-value=0.00016 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+.++|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998863
No 322
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.38 E-value=9.9e-05 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999887653
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.38 E-value=0.00012 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999988863
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.38 E-value=0.00011 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999988864
No 325
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.38 E-value=0.00012 Score=50.35 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=19.6
Q ss_pred cCccEE-EEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRI-LMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i-~i~G~~~~GKStli~~l~~ 38 (180)
.++.|| +|+|+|||||+|...+|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445555 4789999999999988863
No 326
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.37 E-value=0.00011 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.....|+|+|++|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998865
No 327
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.37 E-value=0.00013 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
++...|+|+|++||||||+.+.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998887
No 328
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.36 E-value=7.7e-05 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=16.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
++...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998863
No 329
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.36 E-value=8e-05 Score=51.65 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.3
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...+..-|+|.|+.||||||+++.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3355678999999999999999988754
No 330
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.36 E-value=0.00011 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.36 E-value=0.00011 Score=49.10 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 332
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.35 E-value=0.00011 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.0
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.....-|+++|++||||||+++.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988864
No 333
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.35 E-value=0.0042 Score=42.24 Aligned_cols=68 Identities=4% Similarity=-0.070 Sum_probs=46.7
Q ss_pred cCeEEEEEEcCCC-CCChhhHHhhccccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 58 KNVSFTVWDVGGQ-DKIRPLWRHYFQNTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 58 ~~~~~~i~D~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
..+.+.++|+|+. ... .....+..+|.++++...+ ..++......+..+... .+.++.+|+|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence 4578999999987 433 3455677899999999875 45555555555544331 1456889999998764
No 334
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.35 E-value=9.2e-05 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..--++|+|++|||||||++.+++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999999999999976
No 335
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.35 E-value=0.00013 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+..+|+|+|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988853
No 336
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.34 E-value=0.00014 Score=49.13 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+...|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988753
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.34 E-value=0.00012 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988853
No 338
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.33 E-value=0.00012 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.+-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3467899999999999999887643
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.32 E-value=0.00014 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=21.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
++...|++.|++||||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999886
No 340
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.32 E-value=0.00013 Score=51.21 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=21.2
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...+.+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999988854
No 341
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.32 E-value=0.00014 Score=52.27 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+....|++.|++||||||+.++|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4466789999999999999999863
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.31 E-value=0.00015 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
....|+|+|++||||||+.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999988754
No 343
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.31 E-value=0.00015 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+..+|+|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988853
No 344
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.30 E-value=0.00016 Score=50.11 Aligned_cols=29 Identities=31% Similarity=0.301 Sum_probs=22.0
Q ss_pred hhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 10 MLFARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 10 ~~~~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...+.+..+|+|+|++||||||+.+.|..
T Consensus 10 ~~~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 10 VPESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33455668999999999999999988863
No 345
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.30 E-value=0.00012 Score=54.16 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 357899999999999998887643
No 346
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.30 E-value=7.7e-05 Score=54.01 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..=.++|+|++|+|||||++.+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 345789999999999999988875
No 347
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.30 E-value=0.00022 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.2
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.+...|+|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999987753
No 348
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.30 E-value=9.1e-05 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.-+++|+|++|+|||||++.|.+.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887643
No 349
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.30 E-value=0.00014 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=21.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
....+-|+|+|++|||||||++.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456779999999999999998875
No 350
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.29 E-value=0.00015 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhh
Q 030289 15 KEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~ 37 (180)
+...|+|.|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 351
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.29 E-value=0.00017 Score=48.33 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988863
No 352
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.28 E-value=0.00017 Score=48.12 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.1
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.++...|+++|.+||||||+.+.|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999988864
No 353
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.28 E-value=0.00013 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999887644
No 354
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.28 E-value=0.00018 Score=48.94 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 355
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.27 E-value=0.00018 Score=48.99 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...|+|.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998863
No 356
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.27 E-value=0.00013 Score=52.78 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.-.++++|++||||||+++.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 355788999999999999998863
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.27 E-value=0.00016 Score=49.71 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988853
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.25 E-value=0.00019 Score=46.95 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988864
No 359
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.25 E-value=6.3e-05 Score=49.81 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.++|+|++|+|||||++.+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.00015 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
-++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999998753
No 361
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.25 E-value=0.00014 Score=52.53 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.--++++|++||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 44688999999999999988864
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.25 E-value=0.00016 Score=47.79 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988853
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00012 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..-.++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999988753
No 364
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.24 E-value=0.00017 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+..-|+|+|++|||||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988875
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.23 E-value=0.00016 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999887643
No 366
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.23 E-value=0.0002 Score=49.76 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.6
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
.++++.|+|.|++|+||||+.+.|.
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3457899999999999999998886
No 367
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.23 E-value=0.00023 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...=.++|+|++|||||||++.+++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444899999999999999998865
No 368
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.22 E-value=0.0002 Score=49.32 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988853
No 369
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.22 E-value=0.00022 Score=48.20 Aligned_cols=26 Identities=31% Similarity=0.239 Sum_probs=21.4
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.+...|+|.|++||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455789999999999999988863
No 370
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.21 E-value=0.00018 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
=-++++|++|||||||++.+.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 35789999999999999988764
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.00043 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=21.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...-.+++.|++|+|||+|++.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999888643
No 372
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.21 E-value=0.00028 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..-.++|+|++|||||||++.+++--
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45569999999999999999998643
No 373
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.21 E-value=0.00018 Score=53.60 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 357899999999999999887643
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=0.00018 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..-.++|+|++|+|||||++.+.+--
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999988643
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.20 E-value=0.00017 Score=53.53 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=22.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
...-.++|+|++|+|||||++.+.+--
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345689999999999999999998643
No 376
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.20 E-value=0.00018 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 357899999999999999887643
No 377
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.19 E-value=0.00033 Score=48.37 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..-.+++.|++|+|||+|++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999988864
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.18 E-value=0.0002 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHhhcCC
Q 030289 18 RILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~~ 40 (180)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999887644
No 379
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.00019 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 380
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.16 E-value=0.00021 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.=-++++|++|||||||++.+.+-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 335789999999999999988764
No 381
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.00023 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.14 E-value=0.00024 Score=47.22 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
-.+|+|++|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998853
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.14 E-value=0.00029 Score=47.12 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 384
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.13 E-value=0.00019 Score=50.54 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.....|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999988753
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.13 E-value=0.00029 Score=47.28 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
-|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.13 E-value=0.0003 Score=46.63 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+...|+++|++||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988864
No 387
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.12 E-value=0.00033 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-.++|+|++|||||||++.+.+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999998875
No 388
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.11 E-value=0.00032 Score=48.03 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 389
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.10 E-value=0.00025 Score=52.52 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.--++++|++||||||+++.+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 44688999999999999988864
No 390
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.09 E-value=0.00037 Score=45.97 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-++|+|++|||||||+++|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999874
No 391
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.08 E-value=0.00047 Score=52.11 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=23.2
Q ss_pred hhhcccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 9 KMLFARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 9 ~~~~~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+..+....=.++|+|++|||||||++.+++
T Consensus 160 ~~l~~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 160 RRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp HHHHTSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 344444444689999999999999999875
No 392
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.07 E-value=0.00016 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 357899999999999999887643
No 393
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.07 E-value=0.00028 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.=.++++|++|||||||++.+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34578999999999999988875
No 394
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00049 Score=46.73 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999988864
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.00038 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988863
No 396
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.06 E-value=0.00032 Score=46.68 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988853
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.06 E-value=0.00028 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999988753
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.06 E-value=0.00011 Score=50.10 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999998863
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.05 E-value=0.0003 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.--++++|++|+|||||+..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345688999999999999998873
No 400
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.05 E-value=0.00037 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhh
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
+.+.+.|+|.|++||||||+.+.|.
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999998886
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.05 E-value=0.00033 Score=45.99 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988853
No 402
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.05 E-value=0.00036 Score=45.05 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHhh
Q 030289 19 ILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~ 37 (180)
.+|+|++|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999875
No 403
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.05 E-value=0.00029 Score=50.14 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999988753
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.04 E-value=0.00038 Score=49.17 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.04 E-value=0.00025 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
-++|+|+.|||||||++.+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4579999999999999999854
No 406
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.03 E-value=0.00054 Score=45.24 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-.+++.|++|+|||+|++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999988864
No 407
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.02 E-value=0.00043 Score=47.03 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.+++.||||+|||+++.++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999877763
No 408
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.01 E-value=0.00041 Score=46.79 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.++.|++.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988864
No 409
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.01 E-value=0.00043 Score=45.33 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
-+|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999988853
No 410
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.01 E-value=0.00032 Score=53.90 Aligned_cols=24 Identities=46% Similarity=0.600 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..--++|+|++|||||||++.|.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 345688999999999999988863
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.00 E-value=0.00035 Score=51.49 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.+.=+++++|++|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998754
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.99 E-value=0.00016 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=-++++|++|||||||++.+.+-.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 357899999999999999887643
No 413
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.98 E-value=0.00037 Score=49.24 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=21.8
Q ss_pred cccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 12 FARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 12 ~~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...+...|+|.|..||||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3356678999999999999999888643
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.98 E-value=0.00054 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+..-|+|.|++||||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999988864
No 415
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00033 Score=53.56 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
...-.++|+|++|||||||++.|++-.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 355679999999999999999887644
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.95 E-value=0.00069 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988864
No 417
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.00043 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.=-++++|++|||||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3445789999999999999988864
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00043 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-+|+++|++||||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 55899999999999999988854
No 419
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.93 E-value=0.00064 Score=49.85 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=23.7
Q ss_pred HHHhhhcccCc-cEEEEEcCCCCChHHHHHHhhcC
Q 030289 6 SRLKMLFARKE-MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 6 ~~~~~~~~~~~-~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..+........ .+++|.|++|+||||+++.+...
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33433333332 24899999999999999888653
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.92 E-value=0.00043 Score=49.75 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..--++|+|++|+|||||+..+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 344588999999999999988764
No 421
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.0006 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-.+++.|++|+|||+|++.+.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 44699999999999999998874
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.92 E-value=0.0005 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999887643
No 423
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.91 E-value=0.00063 Score=46.37 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.....|++.|++||||||+.+.|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999988764
No 424
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.89 E-value=0.00051 Score=46.86 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..--++++|++|+|||||+..+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999976
No 425
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.88 E-value=0.00052 Score=50.97 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHhh
Q 030289 19 ILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~ 37 (180)
.+|+|++|||||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.87 E-value=0.00092 Score=45.90 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988864
No 427
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.87 E-value=0.00069 Score=46.90 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.+++.+|+|++||||||+..+|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988853
No 428
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.00053 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=21.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...--++|+|++|+|||||+..+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3455789999999999999999886
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.86 E-value=0.00078 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+...|+|+|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988864
No 430
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.86 E-value=0.00057 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.=.++++|++|+|||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3457899999999999999988753
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.85 E-value=0.00052 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
--++|+|++|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999988864
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.00057 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..=.++++|++|+|||||++.+.+-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3456899999999999999988764
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.81 E-value=0.00061 Score=51.80 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.+.=+++|+|++|+|||||++.+.+..
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455689999999999999999888654
No 434
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.00095 Score=49.02 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
+++|.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999988865
No 435
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.81 E-value=0.00073 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|++.|++||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 436
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.81 E-value=0.00067 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.=.++++|++|+|||||++.+.+-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999888753
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.80 E-value=0.00043 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=18.2
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+.+-|+|.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999988753
No 438
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.80 E-value=0.00085 Score=48.34 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=59.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc------C-C--ccc---cccc-----------cceeEEE------E-----EEcCe
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL------G-E--IVT---TIPT-----------IGFNVET------V-----EYKNV 60 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~------~-~--~~~---~~~t-----------~~~~~~~------~-----~~~~~ 60 (180)
+.-.++++|++|+||||++..|.. + + ... +.++ .+..... + ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 456789999999999999988752 2 1 000 0000 0100000 0 01456
Q ss_pred EEEEEEcCCCCCChh-hH---Hhhcc--ccCEEEEEEECCChhhHHHHHHHHHHHhcccccCCCeEEEEEecCCCCC
Q 030289 61 SFTVWDVGGQDKIRP-LW---RHYFQ--NTHGLIFVVDSNDRERIGEAKDELHRMLSEDELREAVLLVFANKQDLPN 131 (180)
Q Consensus 61 ~~~i~D~~G~~~~~~-~~---~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiv~nK~D~~~ 131 (180)
++.++||+|...... .. ...+. ..+.+++|+|++.. ...+.++...+. .-+ ..-+|.||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCC-CCEEEEeCCCccc
Confidence 899999999765432 11 12222 35778899987632 233333322221 111 2346679999764
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.77 E-value=0.00076 Score=53.39 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
..=.++++|++|+|||||++.+.+-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468999999999999999887643
No 440
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.77 E-value=0.00058 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.=.++++|++|+|||||++.+.+-
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3457899999999999999877753
No 441
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.76 E-value=0.0006 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.=.++++|++|+|||||++.+.+-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999988753
No 442
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.75 E-value=0.0013 Score=46.52 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.3
Q ss_pred ccCccEEEEEcCCCCChHHHHHHhhc
Q 030289 13 ARKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 13 ~~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
......+++.|++|+|||+|+..+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45567899999999999999988875
No 443
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.74 E-value=0.00095 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.241 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999998874
No 444
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.74 E-value=0.0011 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..-.+++.|++|+|||++++.+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.74 E-value=0.0011 Score=44.83 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHhhc
Q 030289 18 RILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~ 38 (180)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988854
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.73 E-value=0.00078 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhcCC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
=.++|+|++|+|||||++.+.+-.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999988644
No 447
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.73 E-value=0.00069 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+.=.++++|++|+|||||++.+.+-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457899999999999999888753
No 448
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.0015 Score=46.51 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...-.+++.|++|+|||+|++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999998743
No 449
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.72 E-value=0.0009 Score=45.74 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=20.3
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.+.|++.|++||||||+.+.|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988754
No 450
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00083 Score=42.87 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=22.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.....|++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 45678999999999999999877644
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.70 E-value=0.001 Score=44.94 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
....-|+|+|++|+|||+|...|....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 445678999999999999999997543
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.70 E-value=0.00093 Score=52.17 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++|+|++|+|||||++.+.+-.
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999988654
No 453
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.70 E-value=0.00082 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
+.--++|+|++|+|||||+..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344688999999999999988864
No 454
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.69 E-value=0.0008 Score=53.10 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..=.++++|++|+|||||++.+.+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999988875
No 455
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.68 E-value=0.0011 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
.....+++.|++|+|||++++.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 445579999999999999997664
No 456
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.68 E-value=0.0012 Score=46.32 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..-.+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998864
No 457
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.68 E-value=0.0011 Score=47.56 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..-+++.|+||+|||+|++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 44677889999999999998874
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.67 E-value=0.00091 Score=52.95 Aligned_cols=25 Identities=36% Similarity=0.275 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.+-.
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999888644
No 459
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.65 E-value=0.0019 Score=47.56 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.2
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...+|+++|++|+||||+...|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999977653
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.65 E-value=0.0011 Score=45.07 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.2
Q ss_pred EEEEEcCCCCChHHHHHHhh
Q 030289 18 RILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~ 37 (180)
-.+|+|++|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999998874
No 461
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.64 E-value=0.0018 Score=47.46 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHhhhcccC-ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 5 ISRLKMLFARK-EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 5 ~~~~~~~~~~~-~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
+..+....... .-.+++.|++|+|||++++.+...
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34444444333 134999999999999999888743
No 462
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.62 E-value=0.0013 Score=47.37 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...-.+++.|++|+|||+|++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34557999999999999999988753
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.61 E-value=0.0014 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..-|+|+||+|||||||..+|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 345889999999999999998643
No 464
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.0011 Score=48.03 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=19.3
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.--|+++|++|+||||++..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34578999999999999988853
No 465
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0011 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHhhcCC
Q 030289 19 ILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 19 i~i~G~~~~GKStli~~l~~~~ 40 (180)
++++|++|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7899999999999999888654
No 466
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.57 E-value=0.0015 Score=48.30 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.5
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-.++|.|++|+|||+|++.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999988874
No 467
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.55 E-value=0.0013 Score=45.52 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=18.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
++..-|+|-|++||||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988863
No 468
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.54 E-value=0.0012 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-.+++.|++|+|||+|++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999988874
No 469
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0013 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.6
Q ss_pred ccEEEEEcCCCCChHHHHHHhh
Q 030289 16 EMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~ 37 (180)
.--++++|++|+|||||+..+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4468899999999999987775
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.51 E-value=0.0012 Score=48.61 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..--+.|+|++|+|||||+..++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456789999999999999998754
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.51 E-value=0.0018 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-|+++|++||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 455688999999999999999874
No 472
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0013 Score=49.73 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
..--+++.||||+|||+|++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 344599999999999999999874
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.50 E-value=0.0018 Score=47.12 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988864
No 474
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0013 Score=48.69 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.48 E-value=0.0016 Score=46.77 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCChHHHHHHhhc
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999988864
No 476
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.47 E-value=0.0015 Score=48.38 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.++|.|++|+|||||++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988743
No 477
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.46 E-value=0.0019 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...-+++++|++|+|||++++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999988864
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.46 E-value=0.0016 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-|+|+|++|||||||..+|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988864
No 479
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0027 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...--|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4456799999999999999999874
No 480
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.45 E-value=0.0019 Score=44.92 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...|+|.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 481
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.44 E-value=0.00095 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=22.1
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+...++++|++|||||||.+.|.+.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHh
Confidence 35678999999999999999888643
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.44 E-value=0.0021 Score=44.05 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhh
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~ 37 (180)
++..-|+|-|++||||||+++.|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 456789999999999999998885
No 483
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.44 E-value=0.0022 Score=44.26 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.3
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.+..-|+|.|..||||||+++.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999988853
No 484
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.44 E-value=0.0022 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.0
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
++..-|+|.|++||||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999988853
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.42 E-value=0.0018 Score=53.85 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 16 EMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.=.++++|++|+|||||++.+.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999998654
No 486
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0016 Score=49.46 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.8
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...--|++.||||+|||+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4456899999999999999999874
No 487
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.0027 Score=45.88 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHhhcC
Q 030289 18 RILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~~~ 39 (180)
.+++.|++|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999888743
No 488
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.40 E-value=0.0024 Score=46.71 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
.-|+|+|++|||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988743
No 489
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.39 E-value=0.0022 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.4
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...+++.|++|+|||+|++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999998864
No 490
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.39 E-value=0.0021 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.+++.|++|+|||++++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999988864
No 491
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.38 E-value=0.0019 Score=47.45 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=16.5
Q ss_pred EEEcCCCCChHHHHHHhh
Q 030289 20 LMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 20 ~i~G~~~~GKStli~~l~ 37 (180)
+|+|++|+|||||+.+++
T Consensus 27 ~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 699999999999999874
No 492
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.0033 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHhhc
Q 030289 17 MRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~ 38 (180)
-.++|.|++|+|||+++..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988863
No 493
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.36 E-value=0.0023 Score=48.80 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHhhcC
Q 030289 17 MRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..++|.|++|+|||||++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 37999999999999999888743
No 494
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.35 E-value=0.0024 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHHHhhc
Q 030289 16 EMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 16 ~~~i~i~G~~~~GKStli~~l~~ 38 (180)
.-.+++.|++|+|||+|++.+..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 45799999999999999998875
No 495
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.33 E-value=0.0016 Score=47.38 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHhh
Q 030289 18 RILMVGLDAAGKTTILYKLK 37 (180)
Q Consensus 18 ~i~i~G~~~~GKStli~~l~ 37 (180)
-.+|+|++|+|||||+..+.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 56799999999999999986
No 496
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.33 E-value=0.0015 Score=52.46 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=17.4
Q ss_pred cEEEEEcCCCCChHHHHHHh
Q 030289 17 MRILMVGLDAAGKTTILYKL 36 (180)
Q Consensus 17 ~~i~i~G~~~~GKStli~~l 36 (180)
=.++|+|++|||||||++.+
T Consensus 349 e~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTT
T ss_pred CEEEEEeeCCCCHHHHHHHH
Confidence 35789999999999999764
No 497
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0019 Score=48.42 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.7
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhc
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKL 38 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~ 38 (180)
...--|++.||||+|||.|++++.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH
Confidence 4456799999999999999999874
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.32 E-value=0.0023 Score=42.22 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.0
Q ss_pred CccEEEEEcCCCCChHHHHHHhhcC
Q 030289 15 KEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 15 ~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
...=++|.|++|+||||+.-.|...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3456899999999999999888754
No 499
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.32 E-value=0.0025 Score=44.88 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.6
Q ss_pred cCccEEEEEcCCCCChHHHHHHhhcCC
Q 030289 14 RKEMRILMVGLDAAGKTTILYKLKLGE 40 (180)
Q Consensus 14 ~~~~~i~i~G~~~~GKStli~~l~~~~ 40 (180)
.....++|.|++|+|||++++.+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 345789999999999999998887543
No 500
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.32 E-value=0.0031 Score=45.97 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=24.2
Q ss_pred HHHhhhcccCccEEEEEcCCCCChHHHHHHhhcC
Q 030289 6 SRLKMLFARKEMRILMVGLDAAGKTTILYKLKLG 39 (180)
Q Consensus 6 ~~~~~~~~~~~~~i~i~G~~~~GKStli~~l~~~ 39 (180)
..+.+.+... --++|.|+.|+|||||++.+...
T Consensus 22 ~~L~~~l~~~-~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 22 RKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CeEEEECCCcCCHHHHHHHHHHH
Confidence 3444444332 57889999999999999998743
Done!