BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030290
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
Length = 133
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 51 SALAFLQERLQQYKLVEMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFE 109
+ALA + +L Y+ +++L+ QQ + ++A I ++E ++ +Q K +G E L
Sbjct: 1 AALAEIVAQLNIYQ-SQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVP--- 55
Query: 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA--TVLLQKN 150
V G F +A ++DT V + +GA V ++ + ++A ++ QKN
Sbjct: 56 VGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKN 98
>pdb|2WAO|A Chain A, Structure Of A Family Two Carbohydrate Esterase From
Clostridium Thermocellum In Complex With Cellohexaose
Length = 341
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 109 EVSEGIFSRARIEDTDS---VCLWLGANVMLEYSCDEATVLLQKNLEN 153
E + GI R + +D C W G+NV L + EA+V ++ EN
Sbjct: 6 EDNPGILYNGRFDFSDPNGPKCAWSGSNVELNFYGTEASVTIKSGGEN 53
>pdb|2WAB|A Chain A, Structure Of An Active Site Mutant Of A Family Two
Carbohydrate Esterase From Clostridium Thermocellum In
Complex With Celluohexase
Length = 341
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 109 EVSEGIFSRARIEDTDS---VCLWLGANVMLEYSCDEATVLLQKNLEN 153
E + GI R + +D C W G+NV L + EA+V ++ EN
Sbjct: 6 EDNPGILYNGRFDFSDPNGPKCAWSGSNVELNFYGTEASVTIKSGGEN 53
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 30.8 bits (68), Expect = 0.44, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD+++ LD + L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQQILDDIKALAAEQ 78
>pdb|2ZDI|C Chain C, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
Ot3
Length = 151
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLE 152
+ G F + I D ++ + +G+ +E S DEA L+K L+
Sbjct: 66 IGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLK 108
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 142 EATVLLQKNLENAKASLEVLIADLQFLRDQ 171
E L K + AKAS+EV+ A+L LRD+
Sbjct: 28 EKMTLSHKEIPTAKASVEVICAELLRLRDR 57
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 258 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 305
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 258 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 305
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74
+GI A+ ED Q+ ++ + FL + Q + +E+++LA Q
Sbjct: 252 KGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLEVQILADQ 299
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 91 VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133
V TL+ +EG D+ + S+ R+E +++C+ LG+
Sbjct: 89 VNTLKFSREGISGFNTDYIGFGKMLSKFRVEIKNNICVVLGSG 131
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +
Sbjct: 11 FPAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFI 65
Query: 89 DIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
D TL+A + E G +SR R
Sbjct: 66 DRFPTLEALADADEDEVLKAWEGLGYYSRVR 96
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 30 PAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +D
Sbjct: 1 PAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFID 55
Query: 90 IVATLQAKKEGGEALTADFEVSEGIFSRAR 119
TL+A + E G +SR R
Sbjct: 56 RFPTLEALADADEDEVLKAWEGLGYYSRVR 85
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +
Sbjct: 11 FPAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFI 65
Query: 89 DIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
D TL+A + E G +SR R
Sbjct: 66 DRFPTLEALADADEDEVLKAWEGLGYYSRVR 96
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88
PA +F D+ + ++ D L + ++R YK+ +++ QQ ++ IP E+ +
Sbjct: 11 FPAREFQRDLLDWFARERRD----LPWRKDR-DPYKVWVSEVMLQQTRVETVIPYFEQFI 65
Query: 89 DIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
D TL+A + E G +SR R
Sbjct: 66 DRFPTLEALADADEDEVLKAWEGLGYYSRVR 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,573,703
Number of Sequences: 62578
Number of extensions: 118043
Number of successful extensions: 354
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 23
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)