BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030290
(180 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57741|PFD3_ARATH Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510
PE=2 SV=1
Length = 195
Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 129/154 (83%), Positives = 144/154 (93%)
Query: 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83
TERRGIPAA+F++DV+T+LSQ LD NSALAF QERLQQYK+VEMKLLAQQRDLQAKIPD
Sbjct: 14 TERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKIPD 73
Query: 84 IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143
IEKCL++VATL+AKK GEAL ADFEVSEGI+SRA IEDTDSVCLWLGANVMLEYSC+EA
Sbjct: 74 IEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYSCEEA 133
Query: 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
+ LL+ NLENAKASLEVL+ADLQFLRDQVT+TQV
Sbjct: 134 SALLKNNLENAKASLEVLVADLQFLRDQVTVTQV 167
>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2
Length = 196
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
Query: 9 ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYKLVE 67
A + TAA + GIP A FVEDV +F+ Q + ++ L L E+ Q+YK +E
Sbjct: 4 AKDGCGLETAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQYQKYKFME 63
Query: 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127
+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A + TD VC
Sbjct: 64 LNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKASVPPTDKVC 123
Query: 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
LWLGANVMLEY DEA LL+KNL A +L+ L DL FLRDQ T T+V
Sbjct: 124 LWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 173
>sp|Q5RCG9|PFD3_PONAB Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1
Length = 197
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 4 ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
A+ + + E+AT RR GIP A FVEDV +F+ Q + ++ L L E+
Sbjct: 2 AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56
Query: 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
Q+YK +E+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A
Sbjct: 57 YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116
Query: 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
+ TD VCLWLGANVMLEY DEA LL+KNL A +L+ L DL FLRDQ T T+V
Sbjct: 117 VPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174
>sp|P61758|PFD3_HUMAN Prefoldin subunit 3 OS=Homo sapiens GN=VBP1 PE=1 SV=3
Length = 197
Score = 136 bits (343), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 4 ASAETASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQER 59
A+ + + E+AT RR GIP A FVEDV +F+ Q + ++ L L E+
Sbjct: 2 AAVKDSCGKGEMATGNG-----RRLHLGIPEAVFVEDVDSFMKQPGNETADTVLKKLDEQ 56
Query: 60 LQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRAR 119
Q+YK +E+ L ++R L+ +IP+I++ L+I+ +Q KKE ++ F +++ ++ +A
Sbjct: 57 YQKYKFMELNLAQKKRRLKGQIPEIKQTLEILKYMQKKKESTNSMETRFLLADNLYCKAS 116
Query: 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
+ TD +CLWLGANVMLEY DEA LL+KNL A +L+ L DL FLRDQ T T+V
Sbjct: 117 VPPTDKMCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLEEDLDFLRDQFTTTEV 174
>sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 PE=2 SV=1
Length = 197
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
Query: 9 ASSSSEIATAAASPTTERR---GIPAAQFVEDVQTFLSQLDLDV-NSALAFLQERLQQYK 64
A+S + RR GIP A FVEDV +F+ Q + + L L E+ Q+YK
Sbjct: 2 AASKDGCGVGEVAAGNGRRLHLGIPEAVFVEDVDSFMKQPGNETADIVLKKLDEQYQKYK 61
Query: 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124
+E+ L ++R L+ +IP+I++ L+I+ Q KKE +L F +++ ++ +A + TD
Sbjct: 62 FMELNLAQKKRRLKGQIPEIKQTLEILKYKQKKKESTSSLETRFLLADNLYCKASVPPTD 121
Query: 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
VCLWLGANVMLEY DEA LL+KNL A +L+ L DL FLRDQ T T+V
Sbjct: 122 KVCLWLGANVMLEYDIDEAQALLEKNLLTATKNLDSLEEDLDFLRDQFTTTEV 174
>sp|O18054|PFD3_CAEEL Probable prefoldin subunit 3 OS=Caenorhabditis elegans GN=pfd-3
PE=3 SV=1
Length = 185
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
RGIP ++ +EDV+++L++ L + A L+E+ +YK VE +LAQ+ + KIP+ E
Sbjct: 11 RGIPKSELIEDVESWLTKEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRMSEKIPEFEN 70
Query: 87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
L I+ TL AK+ E+ F +S+ ++++A ++ + V +WLGANVM+EY + A L
Sbjct: 71 SLSIIDTLIAKRAADESFETTFLLSDDVYTKATVQKPEKVSIWLGANVMVEYDLENARKL 130
Query: 147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
L KN + + ++ L +L +++DQ+T T+V
Sbjct: 131 LDKNRGSVQKVVDELTNELSYIKDQITTTEV 161
>sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila melanogaster GN=CG6719
PE=3 SV=2
Length = 185
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 28 GIPAAQFVEDVQTFLSQL-DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
GIP A F+E++ TF+SQ + + L L E+ +Y+ + L A++R L+++IPD+E+
Sbjct: 13 GIPEAVFLEEIDTFMSQPENENCEKVLQRLDEQHGKYRFMACNLEARRRKLKSQIPDLER 72
Query: 87 CLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVL 146
L++V L+ + E E F +S+ +F + + T +V LWLGA+VMLEY DEA L
Sbjct: 73 SLEMVNVLRKEDEERET---QFLLSDQVFIKTLVPPTKTVYLWLGASVMLEYPLDEAEAL 129
Query: 147 LQKNLENAKASLEVLIADLQFLRDQVTITQV 177
L +N+ +A +L+ + D FLRDQ+T T+V
Sbjct: 130 LNQNITSAVGNLKSVEHDQDFLRDQITTTEV 160
>sp|Q54LS2|PFD3_DICDI Probable prefoldin subunit 3 OS=Dictyostelium discoideum GN=pfdn3
PE=3 SV=1
Length = 195
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87
IP F+ +V+ F+ D DV + LQE Q+YK E KL L + +++
Sbjct: 23 NIPMVTFISNVEEFVK--DKDVENVFKQLQEAYQKYKFFESKLSNNISMLTQRSKQLQES 80
Query: 88 LDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLL 147
LDIV ++ K E+ + +E+SEG++S A++ + S+ LWLGANVMLEYS +EA +L
Sbjct: 81 LDIVDHVENK--SNESFSVQYELSEGVYSSAQVNEPKSIYLWLGANVMLEYSFEEAREVL 138
Query: 148 QKNLENAKASLEVLIADLQFLRDQVTITQV 177
+KN + L I DL F++DQ+T T V
Sbjct: 139 RKNKDTVDRQLSESIQDLGFVKDQITTTDV 168
>sp|Q10143|PFD3_SCHPO Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC3H8.07c PE=3 SV=1
Length = 169
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 8/152 (5%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLD-VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85
RGIP AQF E +L ++ L QE + +YK +E ++ + L KIPDI
Sbjct: 7 RGIPPAQFFE-----FKELSMEEAQGHLEKFQEAIAKYKFMETSVVRRVASLDDKIPDIR 61
Query: 86 KCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATV 145
K L V L+ ++ G++ T +E+++ + ++A +E D+V LWLGANVMLEY+ +EA
Sbjct: 62 KTLQSVQFLKERQ--GDSFTVTYELNDTLNAKAEVEAKDNVYLWLGANVMLEYTVEEAEA 119
Query: 146 LLQKNLENAKASLEVLIADLQFLRDQVTITQV 177
LL + L +A+ +L+ DL+FLR QVT +V
Sbjct: 120 LLTQKLNSAEETLKACKEDLEFLRAQVTTMEV 151
>sp|P48363|PFD3_YEAST Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAC10 PE=1 SV=1
Length = 199
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 10/162 (6%)
Query: 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEK 86
RGIP A F+E+V + D QERL +YK ++ LA + L+ +IPD+E
Sbjct: 13 RGIPQAPFIENVNEIIKDPS-DFELCFNKFQERLSKYKFMQESKLATIKQLKTRIPDLEN 71
Query: 87 CLDIVATLQAKKEGG----EALTADFEVSEGIFSRARIEDTD-----SVCLWLGANVMLE 137
L I +L+ + G E + +++++ ++++A+++ + V LWLGA+VMLE
Sbjct: 72 TLKICQSLRNHSDEGDESDEPILLHYQLNDTLYTKAQVDIPEDRADLKVGLWLGADVMLE 131
Query: 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179
Y DEA LL+K L +++ SL V D++FLR+ +T +V C
Sbjct: 132 YPIDEAIELLKKKLADSEQSLTVSTEDVEFLRENITTMEVNC 173
>sp|Q0W5H4|PFDA_UNCMA Prefoldin subunit alpha OS=Uncultured methanogenic archaeon RC-I
GN=pfdA PE=3 SV=1
Length = 138
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 59 RLQQYKLVEMKLLAQQRDL-QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117
++Q Y+ M+ L QQ +L QA I D++ L + +L+ EG E L + G F
Sbjct: 16 KMQAYQ-GRMEALQQQANLIQASINDVDSALKAITSLEGAGEGHELLVP---IGAGSFVH 71
Query: 118 ARIEDTDSVCLWLGANVMLEYSCDEATVLLQ 148
A I D V + LGA++ +E + +A + Q
Sbjct: 72 ATIAKPDKVLVGLGADISVERTVADARKIFQ 102
>sp|A1RXA9|PFDA_THEPD Prefoldin subunit alpha OS=Thermofilum pendens (strain Hrk 5)
GN=pfdA PE=3 SV=1
Length = 129
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 67 EMKLLAQ-----QRDLQAK---IPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRA 118
E +LAQ QR++Q I +++ + + + + ++G E L VS G++ RA
Sbjct: 11 EYSVLAQVAEELQREIQLAQTLIAEVDSAILALKNISSLEDGKEILVP---VSAGVYVRA 67
Query: 119 RIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADL 165
I+ + + +G+N+++E S DEA L K E +E + DL
Sbjct: 68 SIKRQEKFLVAIGSNILVEKSLDEAVEFLNKRKEELSQLVERRMNDL 114
>sp|A4FW54|PFDA_METM5 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=pfdA PE=3 SV=1
Length = 144
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQ 166
G F A++++ + + L +G +V+LE DE V QK++E + + E++ +Q
Sbjct: 59 GAFVNAQVQNPEKIVLSVGVDVLLEKDVDEVIVDFQKSVEELEQTKELVNTQIQ 112
>sp|A8A8L9|PFDA_IGNH4 Prefoldin subunit alpha OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=pfdA PE=3 SV=1
Length = 160
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 81 IPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140
I D+ L+++ L + +G L + G F +A+IEDT++V +G + LE
Sbjct: 59 IDDLYASLEVLDYLTKEGKGKVVLVP---IGAGNFIKAKIEDTNTVITSVGGRLSLEVPS 115
Query: 141 DEATVLLQKNLENAKASLE 159
DEA +K +E+ A+LE
Sbjct: 116 DEA----KKAIESRIAALE 130
>sp|Q5JE63|PFDA2_PYRKO Prefoldin subunit alpha 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA2 PE=3 SV=1
Length = 142
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 92 ATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNL 151
ATL KE G+ + G+ R +IE+ D V + +GA +++ + DEA ++K +
Sbjct: 46 ATLAYLKEKGKGKEIYIPLGSGVAIRGKIENPDDVIMDVGAGILVGATVDEARENIEKRI 105
Query: 152 E 152
+
Sbjct: 106 K 106
>sp|P12435|VP3_BTV10 Core protein VP3 OS=Bluetongue virus 10 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|P03539|VP3_BTV17 Core protein VP3 OS=Bluetongue virus 17 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q65750|VP3_BTV13 Core protein VP3 OS=Bluetongue virus 13 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q65749|VP3_BTV11 Core protein VP3 OS=Bluetongue virus 11 (isolate USA) GN=S3 PE=3
SV=1
Length = 901
Score = 34.3 bits (77), Expect = 0.49, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + TL A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKTLAAEQ 78
>sp|Q18EV0|PFDA_HALWD Prefoldin subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790)
GN=pfdA PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 76 DLQAKIPDIEKCLDIVATLQAKKE-----GGEALTADFEVSEGIFSRARIEDTDSVCLWL 130
DLQ++ I++ +D + TL++ GG+A + RA I+D D + + L
Sbjct: 33 DLQSEQTSIDEAMDAIQTLESGATVQVPLGGDA-----------YVRAEIQDADEIIVGL 81
Query: 131 GANVMLEYSCDEATVLL---QKNLENAKASLEVLIADLQ 166
GA+ E S D A L Q L+N SL I +L+
Sbjct: 82 GADFAAEQSADNAVESLSTKQDALDNRIESLRDDIDELE 120
>sp|A1T1A5|Y104_MYCVP Putative S-adenosyl-L-methionine-dependent methyltransferase
Mvan_0104 OS=Mycobacterium vanbaalenii (strain DSM 7251
/ PYR-1) GN=Mvan_0104 PE=3 SV=1
Length = 309
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 9 ASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68
A SS +A+ PT +RR +P +D T L+ D + A+L E L Y +
Sbjct: 140 AYKSSTLASHGVQPTADRREVP-IDLRQDWPTALTHAGFDADQPTAWLAEGLLMYLPADA 198
Query: 69 --KLLAQQRDLQAKIPDI-EKCLDIVA--TLQAKKEGGEALTADFEVSEGIFSRARIEDT 123
+L AQ +L A + + + I A + +E ++TA F+V + ED
Sbjct: 199 QDRLFAQITELSAPGSRVAAESMGIHAQDRRERMRERFASITAQFDVEPMDITELTYEDP 258
Query: 124 D--SVCLWLGAN 133
D V WL A+
Sbjct: 259 DRADVAQWLTAH 270
>sp|Q9HJ94|PFDA_THEAC Prefoldin subunit alpha OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=pfdA PE=3 SV=1
Length = 130
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 108 FEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQF 167
+ G+F++ I + + + +G+ + + + + + L+KNLE+ KAS++ L+ +
Sbjct: 53 ISIGSGLFAKGNITIDEDLIVPIGSGIYVAETKERSVERLKKNLEDIKASIQKLLDQRKT 112
Query: 168 LRDQ 171
L DQ
Sbjct: 113 LVDQ 116
>sp|A6UWR8|PFDA_META3 Prefoldin subunit alpha OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=pfdA PE=3 SV=1
Length = 144
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIF 115
LQE L++ +L++M+LL ++ + D E DI+ L GG G F
Sbjct: 22 LQEELEKIELMKMELLKSIDSMEG-LKDSE---DILIPL-----GG-----------GAF 61
Query: 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQ 166
+A+ DT V + GA+V LE + V K++E+ + ++IA ++
Sbjct: 62 IKAKAMDTKKVIMGAGADVFLEKDISDVVVDFNKSIEDLDKAGSMIIAKIE 112
>sp|P20608|VP3_BTV1A Core protein VP3 OS=Bluetongue virus 1 (isolate Australia) GN=S3
PE=3 SV=1
Length = 901
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK 98
LQE +Q+ + V+ + R++ +PD++K LD + L A++
Sbjct: 36 LQEIMQKVRQVQADYMTATREVDFTVPDVQKILDDIKALAAEQ 78
>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdA PE=3 SV=1
Length = 138
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 69 KLLAQQRDLQAKIPD-----------IEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117
L AQ R+LQ IE C + TL+ K A+ + G
Sbjct: 11 NLAAQHRELQQNAESVNQQLGMVQMSIEDCTRAILTLEELKSASGAINTMIPLGAGALIH 70
Query: 118 ARIEDTDSVCLWLGANVMLEYSCDEA 143
A I D D + + +GA + +E + EA
Sbjct: 71 ANIADVDKIVVSVGAGISVEKTPTEA 96
>sp|Q6LX82|PFDA_METMP Prefoldin subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=pfdA PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQ 166
G F +A ++ + + L +G +V+LE + D+ V QK++E + + E++ +Q
Sbjct: 59 GAFIKAEAQNPEKIVLSVGVDVLLEKNVDDVIVDFQKSVEELEKTKELVNNQIQ 112
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 31/172 (18%)
Query: 8 TASSSSEIATAAASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLV- 66
+ S +S +A SPT E + + V D++ L L + N A L+E L++YK+
Sbjct: 192 SPSLTSPVAPMVPSPTKEEENLRSQ--VRDLEEKLETLKIKRNEDKAKLKE-LEKYKIQL 248
Query: 67 ------EMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARI 120
+ K+ QQ DLQ ++ + AKKE +AL A E + A
Sbjct: 249 EQVQEWKSKMQEQQADLQRRLKE------------AKKEAKDALEAKERYMEEMADTA-- 294
Query: 121 EDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172
D++ + M E + LQ+ +++ K +E L DL+ L+ ++
Sbjct: 295 ---DAIEMATLDKEMAEERAES----LQQEVDSLKEKVEYLTMDLEILKHEI 339
>sp|A6VH56|PFDA_METM7 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=pfdA PE=3 SV=1
Length = 144
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQ 166
G F +A ++ + + L +G +V+LE DE V QK+++ + + E++ +Q
Sbjct: 59 GAFVKAEAQNPEKIILSVGVDVLLEKDVDEVIVDFQKSVKELEETKELVNTQIQ 112
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEA 103
+++L Q R+ +A P ++KC D + L+ +K GG +
Sbjct: 1578 LEILGQSRNPEAVQPHLKKCFDNIKLLKIQKVGGSS 1613
>sp|A9A9J3|PFDA_METM6 Prefoldin subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=pfdA PE=3 SV=1
Length = 144
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 113 GIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQ 166
G F +A ++ + + L +G +V+LE DE V QK+++ + + E++ +Q
Sbjct: 59 GAFIKAEAQNPEKIILSVGVDVLLEKDVDEVIVDFQKSVKELEETKELVNTQIQ 112
>sp|Q46F99|PFDA_METBF Prefoldin subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pfdA PE=3 SV=1
Length = 144
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 59 RLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRA 118
R Q+++ L Q +QA I ++ + L+ G+ V G F A
Sbjct: 15 RHQEFQRQAEGLKQQMNMVQASITSCDQATVTINELKTVSAEGKTAETMVPVGFGSFVYA 74
Query: 119 RIEDTDSVCLWLGANVMLEYSCDEATVLLQKN-------LENAKASLEVLIADLQFL 168
I++ D V + LGA E + DEA L++ LE ASL I +Q L
Sbjct: 75 EIKNADKVIVDLGAGFSAEETADEAVETLKRRKEQLTKILEQMSASLTKYIQGMQAL 131
>sp|Q4PCV8|RNA14_USTMA mRNA 3'-end-processing protein RNA14 OS=Ustilago maydis (strain 521
/ FGSC 9021) GN=RNA14 PE=3 SV=1
Length = 945
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 46 DLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALT 105
D+DV+ +ER ++ K E+ + +Q A P+IE + A + K T
Sbjct: 582 DVDVDG-----EERERERKAGELLQIRKQELQAAAKPEIEGLKEASALVWIKYMHFLRRT 636
Query: 106 ADFEVSEGIFSRARIEDTDSVCLW--LGANVMLEYSCDEATVLLQKNLE 152
+ +FSRAR C W A+ ++EY C + V+ K E
Sbjct: 637 EGIRPARSVFSRAR---KSPHCTWQVFEASALMEYHCSKDAVVATKVFE 682
>sp|P33474|VP3_EHDVA Core protein VP3 OS=Epizootic hemorrhagic disease virus 2 (strain
Australia) GN=S3 PE=3 SV=1
Length = 899
Score = 30.8 bits (68), Expect = 5.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97
LQE +Q+ + + + +A +D+ IPD++K +D V L ++
Sbjct: 34 LQEIMQKVRQAKSEYMAATKDVDLTIPDVQKIIDGVKELASE 75
>sp|O27646|PFDA_METTH Prefoldin subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pfdA PE=1 SV=1
Length = 141
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 67 EMKLLAQQRD-LQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDS 125
+++L+ QQ + ++A I ++E ++ +Q K +G E L V G F +A ++DT
Sbjct: 20 QVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVP---VGAGSFIKAELKDTSE 75
Query: 126 VCLWLGANVMLEYSCDEA--TVLLQKN 150
V + +GA V ++ + ++A ++ QKN
Sbjct: 76 VIMSVGAGVAIKKNFEDAMESIKSQKN 102
>sp|P97927|LAMA4_MOUSE Laminin subunit alpha-4 OS=Mus musculus GN=Lama4 PE=1 SV=2
Length = 1816
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 48 DVNSALAFLQERL----QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK-----K 98
D+NS + L+ RL QY L ++++ + L++ +PD+E + + K K
Sbjct: 306 DMNSTIHLLRTRLSERENQYTLRKIQINNSENTLRSLLPDVEGLHEKGSQASRKGMLVEK 365
Query: 99 EGGEAL-TADFEVSEGIFSRARIEDTDSVCLWLGANVML-EYSCDEATVLLQKNLENAKA 156
E + + A V + R +I++ +S L+ G N L E VL QK LE ++
Sbjct: 366 ESMDTIDQATHLVEQAHNMRDKIQEINSKMLYYGENQELGPEEIAEKLVLAQKMLEEIRS 425
>sp|Q9P7Y4|MED14_SCHPO Mediator of RNA polymerase II transcription subunit 14
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=med14 PE=1 SV=2
Length = 879
Score = 30.4 bits (67), Expect = 6.6, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 68 MKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127
M+LL R + P + +C+D+VA LQ +K + L + S AR+ ++D V
Sbjct: 62 MRLLVLARWVHLS-PSVHRCIDVVAFLQGQKFCFQNLVHVLQDIRYQLSFARLRNSDLVT 120
Query: 128 ----LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVV 178
L G ++ L + +L ++ + K L+ L A +R ++++ +++
Sbjct: 121 ALDILSTGTSLRLANAPTSKLYMLSESPLSTKQILQTLHALNMLIRIRLSLYEII 175
>sp|Q9VS48|SLX4_DROME Structure-specific endonuclease subunit SLX4 OS=Drosophila
melanogaster GN=mus312 PE=1 SV=2
Length = 1145
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 20 ASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSA 52
ASP T++R IP Q ED+ FL D N +
Sbjct: 731 ASPVTKKRAIPQFQTEEDLDAFLMDFSTDGNGS 763
>sp|Q8TUY7|PFDA_METKA Prefoldin subunit alpha OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pfdA PE=3 SV=1
Length = 157
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 FSRARIEDTDSVCLWLGANVMLEYSCDEA 143
F RA + DT+ V + +GA V +E + DEA
Sbjct: 73 FVRACVTDTERVIVGIGAGVAVERTIDEA 101
>sp|A6UQB4|PFDA_METVS Prefoldin subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=pfdA PE=3 SV=1
Length = 146
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 91 VATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKN 150
+ ++++ K GE + + G F +A +++ + + L +G +V+LE +E + + +
Sbjct: 40 IESMESLKTSGEIM---LPLGAGSFVKADVKNPEKIILSVGVDVLLEKDVEEVILDFKNS 96
Query: 151 LENAKASLEVLIADLQFLRDQVT 173
L+ + + E++ +Q +VT
Sbjct: 97 LDELEKTKELITTQIQKTSKEVT 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,107,951
Number of Sequences: 539616
Number of extensions: 1785965
Number of successful extensions: 7507
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 7449
Number of HSP's gapped (non-prelim): 98
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)