Query 030290
Match_columns 180
No_of_seqs 149 out of 288
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:28:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3313 Molecular chaperone Pr 100.0 1.3E-58 2.9E-63 374.2 17.8 158 23-180 9-166 (187)
2 PRK03947 prefoldin subunit alp 99.9 2E-26 4.4E-31 179.9 16.8 123 49-174 4-126 (140)
3 TIGR00293 prefoldin, archaeal 99.9 2E-26 4.2E-31 176.7 14.1 118 54-175 2-119 (126)
4 cd00584 Prefoldin_alpha Prefol 99.9 9.3E-25 2E-29 168.0 13.7 123 54-179 2-124 (129)
5 cd00890 Prefoldin Prefoldin is 99.9 1.6E-21 3.4E-26 148.4 14.0 123 54-179 2-124 (129)
6 PF02996 Prefoldin: Prefoldin 99.9 6.3E-22 1.4E-26 149.6 9.6 113 63-178 1-113 (120)
7 COG1730 GIM5 Predicted prefold 99.8 6.5E-19 1.4E-23 140.1 16.2 121 51-174 6-126 (145)
8 PRK14011 prefoldin subunit alp 99.8 7.4E-19 1.6E-23 139.6 15.1 117 52-174 4-120 (144)
9 PRK01203 prefoldin subunit alp 99.7 9.4E-17 2E-21 125.7 15.2 115 55-173 4-118 (130)
10 KOG3048 Molecular chaperone Pr 99.2 1.4E-09 3.1E-14 86.5 13.9 111 55-168 17-127 (153)
11 KOG3047 Predicted transcriptio 99.1 2.1E-09 4.5E-14 84.6 10.6 95 78-174 43-137 (157)
12 cd00632 Prefoldin_beta Prefold 98.4 1.6E-06 3.4E-11 64.9 7.2 96 54-176 2-97 (105)
13 TIGR02338 gimC_beta prefoldin, 98.3 6E-06 1.3E-10 62.4 9.2 98 52-176 4-101 (110)
14 PF01920 Prefoldin_2: Prefoldi 97.8 0.00088 1.9E-08 49.0 12.8 92 58-176 5-96 (106)
15 cd00890 Prefoldin Prefoldin is 97.6 0.00045 9.7E-09 52.2 7.8 111 50-173 5-125 (129)
16 KOG4098 Molecular chaperone Pr 96.8 0.0055 1.2E-07 48.5 7.3 93 54-173 18-110 (140)
17 PRK09343 prefoldin subunit bet 96.8 0.0061 1.3E-07 47.0 7.2 100 50-176 6-105 (121)
18 COG1382 GimC Prefoldin, chaper 96.6 0.011 2.4E-07 45.9 7.6 92 54-172 9-107 (119)
19 KOG3130 Uncharacterized conser 96.4 0.014 3.1E-07 53.8 7.7 90 83-176 28-117 (514)
20 cd00584 Prefoldin_alpha Prefol 96.3 0.028 6.2E-07 42.9 7.9 106 50-172 5-124 (129)
21 PRK03947 prefoldin subunit alp 96.2 0.044 9.4E-07 42.6 8.7 100 58-173 6-118 (140)
22 TIGR00293 prefoldin, archaeal 95.7 0.089 1.9E-06 40.0 8.3 96 61-173 2-110 (126)
23 KOG3478 Prefoldin subunit 6, K 88.7 3.9 8.5E-05 31.7 8.1 94 52-172 3-106 (120)
24 PRK14011 prefoldin subunit alp 78.5 22 0.00049 28.3 8.7 56 102-170 68-123 (144)
25 PF06825 HSBP1: Heat shock fac 77.1 6.1 0.00013 26.7 4.4 37 55-91 11-47 (54)
26 KOG1760 Molecular chaperone Pr 76.5 36 0.00078 26.9 10.8 82 70-170 35-116 (131)
27 KOG4514 Uncharacterized conser 74.9 12 0.00026 31.6 6.5 23 72-94 199-221 (222)
28 PF09177 Syntaxin-6_N: Syntaxi 74.3 12 0.00026 27.3 5.8 46 48-93 9-67 (97)
29 PF13758 Prefoldin_3: Prefoldi 74.0 8.9 0.00019 29.0 5.0 51 120-170 46-96 (99)
30 KOG2577 Transcription factor E 72.9 6.1 0.00013 36.1 4.6 71 78-173 105-175 (354)
31 PF08946 Osmo_CC: Osmosensory 71.5 4.9 0.00011 26.3 2.7 32 139-170 2-33 (46)
32 PF00626 Gelsolin: Gelsolin re 64.9 4.7 0.0001 27.1 1.7 19 112-133 18-36 (76)
33 COG1382 GimC Prefoldin, chaper 63.6 18 0.00038 28.2 4.9 27 140-166 82-108 (119)
34 PRK01203 prefoldin subunit alp 62.7 7.7 0.00017 30.6 2.8 105 48-169 4-121 (130)
35 KOG4117 Heat shock factor bind 61.4 36 0.00078 24.0 5.6 36 55-90 24-59 (73)
36 PF01920 Prefoldin_2: Prefoldi 60.2 59 0.0013 23.1 8.2 99 51-173 2-100 (106)
37 PF09789 DUF2353: Uncharacteri 59.7 89 0.0019 28.2 9.3 95 52-177 17-114 (319)
38 cd04765 HTH_MlrA-like_sg2 Heli 58.5 14 0.00031 27.1 3.5 36 137-172 58-99 (99)
39 COG3189 Uncharacterized conser 53.0 23 0.0005 27.5 3.9 48 24-74 26-73 (117)
40 PRK00409 recombination and DNA 52.4 2.1E+02 0.0045 28.7 11.4 67 27-94 497-563 (782)
41 PF07889 DUF1664: Protein of u 50.7 55 0.0012 25.6 5.7 52 41-92 35-88 (126)
42 PRK11637 AmiB activator; Provi 50.1 2E+02 0.0044 26.2 11.7 31 141-171 95-125 (428)
43 PF02093 Gag_p30: Gag P30 core 49.7 3.2 6.9E-05 35.3 -1.4 85 28-117 119-208 (211)
44 COG1730 GIM5 Predicted prefold 46.9 1.5E+02 0.0032 23.7 12.0 111 48-172 7-131 (145)
45 PF10779 XhlA: Haemolysin XhlA 43.7 65 0.0014 22.2 4.7 34 140-173 18-51 (71)
46 PF07889 DUF1664: Protein of u 42.8 48 0.001 26.0 4.3 37 139-175 58-94 (126)
47 PRK09343 prefoldin subunit bet 42.3 57 0.0012 24.9 4.7 94 53-173 16-109 (121)
48 TIGR01843 type_I_hlyD type I s 42.0 2.4E+02 0.0052 24.7 10.5 36 103-138 299-334 (423)
49 PF02996 Prefoldin: Prefoldin 40.5 1.3E+02 0.0028 22.0 6.3 44 48-91 74-117 (120)
50 PF02520 DUF148: Domain of unk 40.0 1.1E+02 0.0025 22.5 5.9 60 27-91 14-73 (113)
51 TIGR01069 mutS2 MutS2 family p 40.0 3.5E+02 0.0077 27.1 10.9 65 28-93 493-557 (771)
52 KOG3785 Uncharacterized conser 39.4 54 0.0012 30.8 4.7 84 20-113 17-100 (557)
53 PF09278 MerR-DNA-bind: MerR, 38.7 99 0.0021 20.1 4.9 32 138-169 32-63 (65)
54 PF15219 TEX12: Testis-express 38.3 95 0.0021 23.4 5.1 36 53-88 63-98 (100)
55 PF10552 ORF6C: ORF6C domain; 38.0 61 0.0013 24.3 4.2 35 142-176 1-35 (116)
56 PF02388 FemAB: FemAB family; 37.7 52 0.0011 30.0 4.4 31 134-164 234-264 (406)
57 KOG0859 Synaptobrevin/VAMP-lik 37.6 1.2E+02 0.0026 25.9 6.2 89 24-115 70-166 (217)
58 PF11221 Med21: Subunit 21 of 37.3 1.3E+02 0.0028 23.5 6.1 62 26-87 59-137 (144)
59 PF10157 DUF2365: Uncharacteri 37.2 87 0.0019 25.2 5.1 67 28-94 45-148 (149)
60 cd00632 Prefoldin_beta Prefold 36.8 93 0.002 22.8 4.9 35 139-173 67-101 (105)
61 cd01109 HTH_YyaN Helix-Turn-He 36.8 94 0.002 22.9 5.0 34 139-172 76-109 (113)
62 PF04102 SlyX: SlyX; InterPro 36.8 1.3E+02 0.0028 20.7 5.3 36 141-176 17-52 (69)
63 cd04766 HTH_HspR Helix-Turn-He 36.5 76 0.0016 22.5 4.3 30 138-172 59-88 (91)
64 smart00262 GEL Gelsolin homolo 36.1 27 0.00058 24.4 1.8 15 121-135 32-46 (90)
65 PF15619 Lebercilin: Ciliary p 35.1 2.6E+02 0.0057 23.2 11.2 48 50-97 67-114 (194)
66 PF07097 DUF1359: Protein of u 34.1 2E+02 0.0043 21.5 6.6 83 67-165 11-97 (102)
67 PF13600 DUF4140: N-terminal d 33.9 1.8E+02 0.0039 20.9 6.5 34 140-173 68-101 (104)
68 TIGR02338 gimC_beta prefoldin, 33.7 97 0.0021 23.0 4.6 98 49-173 5-105 (110)
69 PF11853 DUF3373: Protein of u 33.2 33 0.00072 32.7 2.4 32 144-176 27-58 (489)
70 PRK04778 septation ring format 33.0 68 0.0015 30.6 4.5 101 48-173 223-341 (569)
71 PHA02562 46 endonuclease subun 33.0 72 0.0016 29.5 4.6 43 125-170 285-327 (562)
72 TIGR02894 DNA_bind_RsfA transc 32.7 1.3E+02 0.0029 24.6 5.5 17 29-45 76-92 (161)
73 PRK13182 racA polar chromosome 32.4 1.1E+02 0.0023 25.1 5.1 36 139-174 82-117 (175)
74 PRK02224 chromosome segregatio 31.3 1.2E+02 0.0027 29.9 6.1 38 139-176 603-640 (880)
75 PF09304 Cortex-I_coil: Cortex 29.8 1.7E+02 0.0037 22.4 5.4 36 55-90 41-76 (107)
76 PF05308 Mito_fiss_reg: Mitoch 29.3 54 0.0012 28.5 2.9 20 154-173 120-139 (253)
77 PF13864 Enkurin: Calmodulin-b 29.1 1.4E+02 0.003 21.8 4.7 38 55-92 52-94 (98)
78 PF12983 DUF3867: Protein of u 28.7 51 0.0011 27.5 2.5 58 28-85 36-93 (186)
79 COG1579 Zn-ribbon protein, pos 28.5 3.9E+02 0.0085 23.1 9.2 31 142-172 96-126 (239)
80 cd01282 HTH_MerR-like_sg3 Heli 28.5 1.4E+02 0.0031 22.0 4.8 36 137-172 76-111 (112)
81 PHA03385 IX capsid protein IX, 28.2 1.3E+02 0.0029 23.8 4.6 33 141-173 99-131 (135)
82 PRK14127 cell division protein 28.0 1.5E+02 0.0033 22.6 4.9 18 69-86 48-65 (109)
83 PRK00846 hypothetical protein; 27.9 1.3E+02 0.0029 21.5 4.3 36 141-176 26-61 (77)
84 cd01106 HTH_TipAL-Mta Helix-Tu 27.2 1.7E+02 0.0037 21.1 4.9 30 141-170 72-101 (103)
85 TIGR02047 CadR-PbrR Cd(II)/Pb( 26.8 1.8E+02 0.0039 22.0 5.2 34 139-172 76-109 (127)
86 KOG0608 Warts/lats-like serine 26.6 3.1E+02 0.0066 28.0 7.7 100 49-161 573-683 (1034)
87 KOG3501 Molecular chaperone Pr 26.4 1.8E+02 0.0038 22.5 4.9 48 125-172 51-111 (114)
88 KOG1760 Molecular chaperone Pr 26.0 1.7E+02 0.0038 23.1 4.9 42 132-173 71-112 (131)
89 cd04776 HTH_GnyR Helix-Turn-He 25.9 2.1E+02 0.0046 21.4 5.4 32 66-97 81-112 (118)
90 PF05103 DivIVA: DivIVA protei 25.8 29 0.00062 25.9 0.6 40 48-87 22-61 (131)
91 PF08285 DPM3: Dolichol-phosph 25.6 67 0.0014 23.7 2.4 31 130-160 56-86 (91)
92 PF05008 V-SNARE: Vesicle tran 25.4 1.1E+02 0.0024 20.9 3.4 37 136-172 30-77 (79)
93 cd01106 HTH_TipAL-Mta Helix-Tu 25.3 2.1E+02 0.0045 20.6 5.1 30 64-93 72-101 (103)
94 PTZ00421 coronin; Provisional 25.3 2.3E+02 0.0049 26.7 6.5 45 48-92 447-491 (493)
95 PF04508 Pox_A_type_inc: Viral 25.3 68 0.0015 18.1 1.9 19 73-91 2-20 (23)
96 PF08580 KAR9: Yeast cortical 25.1 3.3E+02 0.0072 27.0 7.8 75 64-172 191-265 (683)
97 PF08336 P4Ha_N: Prolyl 4-Hydr 25.1 2.8E+02 0.006 21.1 6.0 58 37-95 51-116 (134)
98 PF08418 Pol_alpha_B_N: DNA po 25.1 53 0.0011 27.6 2.1 34 56-89 202-235 (253)
99 COG1842 PspA Phage shock prote 25.0 2.7E+02 0.0058 23.7 6.4 49 48-96 96-144 (225)
100 PF01166 TSC22: TSC-22/dip/bun 24.8 1.4E+02 0.003 20.6 3.7 38 136-173 8-45 (59)
101 cd04769 HTH_MerR2 Helix-Turn-H 24.7 2.1E+02 0.0045 21.2 5.1 30 67-96 81-110 (116)
102 PF10960 DUF2762: Protein of u 24.7 2.6E+02 0.0055 19.7 6.1 33 63-95 37-69 (71)
103 KOG4796 RNA polymerase II elon 24.4 1.3E+02 0.0029 29.2 4.8 64 32-97 508-582 (604)
104 PRK14092 2-amino-4-hydroxy-6-h 24.0 49 0.0011 26.8 1.6 29 121-149 5-34 (163)
105 cd04777 HTH_MerR-like_sg1 Heli 23.9 1.4E+02 0.0031 21.6 4.0 29 140-168 79-107 (107)
106 cd04776 HTH_GnyR Helix-Turn-He 23.8 2E+02 0.0044 21.5 4.9 35 140-174 78-112 (118)
107 TIGR02044 CueR Cu(I)-responsiv 23.6 2.1E+02 0.0046 21.5 5.0 35 139-173 76-110 (127)
108 COG2433 Uncharacterized conser 23.5 7.4E+02 0.016 24.7 10.4 31 140-170 479-509 (652)
109 PF08150 FerB: FerB (NUC096) d 23.5 47 0.001 23.9 1.2 10 124-133 67-76 (76)
110 cd04770 HTH_HMRTR Helix-Turn-H 23.2 2.4E+02 0.0052 20.9 5.2 35 139-173 76-110 (123)
111 PF04012 PspA_IM30: PspA/IM30 23.1 3.2E+02 0.0069 22.3 6.4 48 48-95 95-142 (221)
112 PF15188 CCDC-167: Coiled-coil 22.9 1.6E+02 0.0036 21.5 4.0 63 70-171 3-65 (85)
113 TIGR01000 bacteriocin_acc bact 22.8 5.6E+02 0.012 23.4 8.5 36 103-138 344-382 (457)
114 COG1842 PspA Phage shock prote 22.6 3.7E+02 0.0081 22.8 6.8 39 49-87 29-67 (225)
115 PF14257 DUF4349: Domain of un 22.6 1.6E+02 0.0034 24.9 4.5 33 147-179 167-199 (262)
116 COG0361 InfA Translation initi 22.6 2.1E+02 0.0044 20.6 4.4 36 104-139 20-58 (75)
117 TIGR02051 MerR Hg(II)-responsi 22.5 2.3E+02 0.005 21.3 5.0 34 139-172 73-106 (124)
118 cd04769 HTH_MerR2 Helix-Turn-H 22.5 2.3E+02 0.0051 20.9 5.0 35 139-173 76-110 (116)
119 PF10400 Vir_act_alpha_C: Viru 22.4 2.6E+02 0.0056 19.1 5.0 33 138-170 17-49 (90)
120 PRK02224 chromosome segregatio 22.3 7.7E+02 0.017 24.4 10.9 27 143-169 259-285 (880)
121 cd01109 HTH_YyaN Helix-Turn-He 22.0 3.2E+02 0.007 19.9 6.4 31 65-95 79-109 (113)
122 PRK04325 hypothetical protein; 22.0 2.1E+02 0.0045 20.1 4.3 35 142-176 23-57 (74)
123 PRK04863 mukB cell division pr 21.9 6.4E+02 0.014 27.5 9.6 94 48-173 569-662 (1486)
124 COG1110 Reverse gyrase [DNA re 21.9 3.1E+02 0.0067 29.1 7.0 26 30-56 204-229 (1187)
125 PRK00736 hypothetical protein; 21.6 2.3E+02 0.005 19.5 4.5 34 142-175 19-52 (68)
126 PF15546 DUF4653: Domain of un 21.5 3.6E+02 0.0077 23.2 6.3 25 73-97 205-230 (239)
127 PRK04406 hypothetical protein; 21.3 2.4E+02 0.0051 19.9 4.5 31 143-173 26-56 (75)
128 PF02388 FemAB: FemAB family; 21.3 5.9E+02 0.013 23.1 8.3 76 48-133 239-324 (406)
129 TIGR02977 phageshock_pspA phag 21.1 3.7E+02 0.008 22.3 6.4 43 49-91 97-139 (219)
130 cd04787 HTH_HMRTR_unk Helix-Tu 21.1 2.5E+02 0.0054 21.4 5.0 34 139-172 76-109 (133)
131 cd04783 HTH_MerR1 Helix-Turn-H 21.0 2.3E+02 0.0049 21.2 4.7 35 139-173 74-108 (126)
132 PRK02793 phi X174 lysis protei 21.0 2.3E+02 0.0049 19.8 4.4 33 142-174 22-54 (72)
133 PF09403 FadA: Adhesion protei 20.9 3.7E+02 0.0079 21.0 5.9 44 52-95 39-82 (126)
134 KOG3403 Translation initiation 20.7 1.5E+02 0.0033 23.5 3.7 34 113-146 64-103 (145)
135 PF09340 NuA4: Histone acetylt 20.6 1.5E+02 0.0033 21.1 3.4 25 150-174 3-27 (80)
136 cd01108 HTH_CueR Helix-Turn-He 20.4 2.7E+02 0.0058 21.0 5.0 35 139-173 76-110 (127)
137 PF15272 BBP1_C: Spindle pole 20.4 2.8E+02 0.006 23.4 5.4 35 53-88 64-98 (196)
138 cd04786 HTH_MerR-like_sg7 Heli 20.3 2E+02 0.0043 22.1 4.3 37 139-175 75-111 (131)
139 cd01107 HTH_BmrR Helix-Turn-He 20.3 2.8E+02 0.006 20.3 5.0 31 141-171 74-104 (108)
140 cd04772 HTH_TioE_rpt1 First He 20.3 1.5E+02 0.0032 21.6 3.4 25 140-164 74-98 (99)
141 PRK13752 putative transcriptio 20.3 2.6E+02 0.0056 21.9 5.0 33 140-172 82-114 (144)
142 cd07624 BAR_SNX7_30 The Bin/Am 20.2 3.2E+02 0.007 22.3 5.8 61 32-93 95-155 (200)
143 TIGR02043 ZntR Zn(II)-responsi 20.0 2.9E+02 0.0063 21.0 5.2 34 139-172 78-111 (131)
144 KOG0996 Structural maintenance 20.0 9.9E+02 0.022 25.8 10.1 45 48-92 782-826 (1293)
145 COG5040 BMH1 14-3-3 family pro 20.0 1.9E+02 0.0041 24.9 4.4 60 116-175 160-232 (268)
No 1
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-58 Score=374.23 Aligned_cols=158 Identities=53% Similarity=0.819 Sum_probs=151.7
Q ss_pred CCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCC
Q 030290 23 TTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGE 102 (180)
Q Consensus 23 ~~~~~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e 102 (180)
.+++||||+|+|||||++|+++|+......++.||+.|+||||||.++.+++.+|+.|||||+++|++|+.|.++++.++
T Consensus 9 ~k~~rGIPeA~fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~ 88 (187)
T KOG3313|consen 9 SKNARGIPEAKFIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGE 88 (187)
T ss_pred hhccCCCChhHHHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCc
Confidence 68999999999999999999999833333499999999999999999999999999999999999999999999988888
Q ss_pred ceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeecC
Q 030290 103 ALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVCN 180 (180)
Q Consensus 103 ~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~~ 180 (180)
.++++|.|+||+|+||.|||+++||||||||||+||+++||.+||++|+.+++++++.+++||+||||||||||||||
T Consensus 89 s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTtEVN~A 166 (187)
T KOG3313|consen 89 SFETTFLLSDGVYTKASVPPTDKVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTTEVNMA 166 (187)
T ss_pred ceeEEEEecccceeeeecCCcCeEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceeeeeeee
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=99.95 E-value=2e-26 Score=179.90 Aligned_cols=123 Identities=29% Similarity=0.371 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEE
Q 030290 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (180)
Q Consensus 49 ~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~L 128 (180)
.++-++.++++|++|+++...|.+++..|...+++++.++++|+.|..+ .++.+++||||+++|++|+|+++++|+|
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~---~~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK---GEGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CCCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 4567899999999999999999999999999999999999999999864 3569999999999999999999999999
Q ss_pred EeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 129 wLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
|||+||||||+++||+++|++|++.+.++++.+.+++.++++++.-
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999753
No 3
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=99.94 E-value=2e-26 Score=176.73 Aligned_cols=118 Identities=26% Similarity=0.348 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+.+..++++|+.+...|++++..|...+++++.++++|+.|..+ ++.+++||||+++|++|+|+++++|+||||+|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~----~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g 77 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA----EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSG 77 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCC
Confidence 57889999999999999999999999999999999999999753 46899999999999999999999999999999
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~ 175 (180)
||||++++||+++|++|++.+.++++.+.+++.++++|++..
T Consensus 78 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 78 YYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999864
No 4
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.93 E-value=9.3e-25 Score=168.03 Aligned_cols=123 Identities=25% Similarity=0.346 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+.++..+++|+..-..+++++..|+..++++..++++|+.|... ..+.+++||||+++|++|+|+++++||||||+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g 78 (129)
T cd00584 2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKA---DEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCC
Confidence 57889999999999999999999999999999999999999763 457999999999999999999999999999999
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~ 179 (180)
||||+++++|+++|++|++.++++++++++++.+++++++.++.++
T Consensus 79 ~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 79 YYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654
No 5
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.88 E-value=1.6e-21 Score=148.44 Aligned_cols=123 Identities=31% Similarity=0.367 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+.+...+++|+..-..+++++..+...+.+++.+++.|+.|... .++.+..+|+|+++|++|+|+++++|++|||+|
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~---~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~ 78 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKA---EEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTG 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCeEEEecCCceEEEEEECCCCEEEEEecCC
Confidence 56788899999999999999999999999999999999999864 456788999999999999999999999999999
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~ 179 (180)
++||+++++|.++|+++++.+++.++.+++++.+++++++.++.+|
T Consensus 79 ~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 79 VYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876654
No 6
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=99.87 E-value=6.3e-22 Score=149.60 Aligned_cols=113 Identities=25% Similarity=0.320 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHH
Q 030290 63 YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDE 142 (180)
Q Consensus 63 Yk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldE 142 (180)
|+..-+++++++..|+..+.++..++++|+.|.. ...+.++++|||+++|++|+|+++++|+||||+|+++|+|++|
T Consensus 1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~---~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~e 77 (120)
T PF02996_consen 1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKK---EKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEE 77 (120)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHH
Confidence 3444568899999999999999999999999987 2467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeee
Q 030290 143 ATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVV 178 (180)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn 178 (180)
|+++|++|++.+++.++.+.+.+..++++++.++-.
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876543
No 7
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.5e-19 Score=140.12 Aligned_cols=121 Identities=27% Similarity=0.382 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEe
Q 030290 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL 130 (180)
Q Consensus 51 ~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwL 130 (180)
.-++.+...|+-|+..-+.|++++..|...+.++..++++|+.++.. +++-+++||+|.++|++|+|.++|+|+|.|
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~---~~g~E~LVpvGag~fv~~kv~~~~kviV~i 82 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGA---GEGKEVLVPVGAGLFVKAKVKDMDKVIVSI 82 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCceEEEEcCCCceEEEEeccCceEEEEc
Confidence 45678888999999999999999999999999999999999999875 225599999999999999999999999999
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 131 GAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
|+||++|.+++||+++|++|++.+++.+.++++.|+.|-..++.
T Consensus 83 Gsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~ 126 (145)
T COG1730 83 GSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQ 126 (145)
T ss_pred CCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887754
No 8
>PRK14011 prefoldin subunit alpha; Provisional
Probab=99.81 E-value=7.4e-19 Score=139.64 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (180)
Q Consensus 52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG 131 (180)
-++.+...|+.|+..-+.|++++..|+.-+.++..++++|+.+. .+.++++|||+++|++|+|.++|+|+|.||
T Consensus 4 elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG 77 (144)
T PRK14011 4 ELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK------TSEEILIPLGPGAFLKAKIVDPDKAILGVG 77 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence 46788888999999999999999999999999999999999664 358899999999999999999999999999
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
+|++||.+++||++++++|++.++++.+++.+.|+.+++++..
T Consensus 78 tGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~ 120 (144)
T PRK14011 78 SDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK 120 (144)
T ss_pred CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988764
No 9
>PRK01203 prefoldin subunit alpha; Provisional
Probab=99.74 E-value=9.4e-17 Score=125.68 Aligned_cols=115 Identities=17% Similarity=0.261 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccce
Q 030290 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV 134 (180)
Q Consensus 55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnV 134 (180)
.+.+.|+-|+.+-+.|++++..|+..+.++..+++.|+.+.. .++-++++|||.++|++|+|.++++|+|.+|+|+
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~----~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy 79 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNEL----DNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV 79 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence 456778889999999999999999999999999999988652 3458999999999999999999999999999999
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 135 mvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+||.+.++|+++|+++++.+++.+......+..|.+++-
T Consensus 80 ~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~ 118 (130)
T PRK01203 80 YIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYN 118 (130)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988864
No 10
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-09 Score=86.47 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccce
Q 030290 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANV 134 (180)
Q Consensus 55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnV 134 (180)
+|.+.-+++-+--..++..+..|..-..-..++++.|+.++.. .++-+.+|||+..+|+.+++.+.++++|.+|-|+
T Consensus 17 QL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~---~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGY 93 (153)
T KOG3048|consen 17 QLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAA---NEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGY 93 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCCeEEEecccceeccceeccccceeEeccCce
Confidence 3334334444333455555555555555666677777777654 6779999999999999999999999999999999
Q ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 135 MLEYSCDEATVLLQKNLENAKASLEVLIADLQFL 168 (180)
Q Consensus 135 mvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~l 168 (180)
+||.+.++|+++.+++++-+.+++++++.-+..=
T Consensus 94 yVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK 127 (153)
T KOG3048|consen 94 YVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEK 127 (153)
T ss_pred EEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876543
No 11
>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]
Probab=99.05 E-value=2.1e-09 Score=84.58 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=80.4
Q ss_pred HhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHH
Q 030290 78 QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKAS 157 (180)
Q Consensus 78 ~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~ 157 (180)
+.+..+.-+.-.+++.|... +..+++...+||+++|+...||+|++|+|-||-+|+||.++.||+++..++...++.-
T Consensus 43 ~eQ~aeY~kLk~t~eRL~ea--ahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf~DRK~dlLkel 120 (157)
T KOG3047|consen 43 QEQCAEYAKLKFTCERLLEA--AHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKFCDRKMDLLKEL 120 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHh--chhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHHHHHhHHHHHHH
Confidence 33344444445566666654 2456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcce
Q 030290 158 LEVLIADLQFLRDQVTI 174 (180)
Q Consensus 158 l~~~~edL~~lrdQiTt 174 (180)
.++++.|--.|+..|+.
T Consensus 121 ~ekLqKdsmkiKa~ihM 137 (157)
T KOG3047|consen 121 MEKLQKDSMKIKADIHM 137 (157)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 99999999999988864
No 12
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=98.36 E-value=1.6e-06 Score=64.94 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+.+...|++|+..-..+.+++..|...+-+.+.+++.|..|.. ..+||..+|.
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~--------------------------d~~vy~~VG~- 54 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLAD--------------------------DAEVYKLVGN- 54 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------cchHHHHhhh-
Confidence 4567778888888889999999999999999999998888742 2344444443
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
|+|+.|.++|...|+++++.++..++.++..+..+..++.-.+
T Consensus 55 vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 55 VLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543
No 13
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=98.30 E-value=6e-06 Score=62.42 Aligned_cols=98 Identities=21% Similarity=0.267 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (180)
Q Consensus 52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG 131 (180)
-++.+...|++|+..-..+.+++..|...+-+.+.+++.++.|. |..+||-.+|
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~--------------------------~d~~vyk~VG 57 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP--------------------------DDTPVYKSVG 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CcchhHHHhc
Confidence 45667777888888888999999999999999999999888874 2345666666
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
. |+|+.+.+||+.-|+++++.++..++.+++.+.+++.++.-++
T Consensus 58 ~-vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 58 N-LLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred h-hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 9999999999999999999999999999999999999886543
No 14
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=97.84 E-value=0.00088 Score=48.95 Aligned_cols=92 Identities=18% Similarity=0.316 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeee
Q 030290 58 ERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLE 137 (180)
Q Consensus 58 e~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvE 137 (180)
..++.++..-..+.+++..|..++-+++.+++.|..|. |..+||..+| +++|+
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~--------------------------~~~~~y~~vG-~~fv~ 57 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD--------------------------DDRKVYKSVG-KMFVK 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--------------------------TT-EEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------CcchhHHHHh-HHHHH
Confidence 33444444444666777778888888888877777653 3346666664 68999
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 138 y~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
.+.+++...|+++++.++..++.+...+.++..++.-.+
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998876543
No 15
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=97.56 E-value=0.00045 Score=52.22 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh----------cCCCceeEEEEcCcceeEEEE
Q 030290 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK----------EGGEALTADFEVSEGIFSRAR 119 (180)
Q Consensus 50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~----------~~~e~~et~f~L~d~~y~kA~ 119 (180)
...++.+++.+++++..-..+..++..++.-+..++..-+......--. .-.++-++.++||.|+|++..
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~ 84 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKS 84 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEec
Confidence 3456777888888888777777777777666555555543322221100 001457799999999999999
Q ss_pred eCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 120 I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+++. +-.+++.++.|+++++.+++.+..+...+..++.++.
T Consensus 85 ~~eA-------------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEA-------------IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8766 3679999999999999999999999999999998874
No 16
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0055 Score=48.49 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+.++..|+.|+...+.|.+.+..|.....|..--+++|+.|. |+.++|= +=.|
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d--------------------------p~RKCfR-mIgG 70 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD--------------------------PTRKCFR-MIGG 70 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------------------------hhhHHHH-Hhcc
Confidence 578889999999999999999999999999999998888874 2233333 3358
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
|-|||++.|-+=.|+.|++.++..+..+.++|......++
T Consensus 71 vLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kEln 110 (140)
T KOG4098|consen 71 VLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELN 110 (140)
T ss_pred chhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877655443
No 17
>PRK09343 prefoldin subunit beta; Provisional
Probab=96.80 E-value=0.0061 Score=47.01 Aligned_cols=100 Identities=18% Similarity=0.225 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEE
Q 030290 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLW 129 (180)
Q Consensus 50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~Lw 129 (180)
.+-++..-..|++++..-..+.+++..|...+-+.+.+++-++.|.. ..+||-.
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~--------------------------d~~VYk~ 59 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD--------------------------DTPIYKI 59 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------cchhHHH
Confidence 34445555556666666668888999999999999999888877642 2356666
Q ss_pred eccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 130 LGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 130 LGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
+| .|+|--|.+||+.-|++|++.++..++.++....+++.++.-.+
T Consensus 60 VG-~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 60 VG-NLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred hh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 57788899999999999999999999999999999888876544
No 18
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.011 Score=45.92 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+..-..|++++..-+.+..++..++..+-|++++|+-|+.|... - .||-.+| |
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD------~--------------------~vYk~VG-~ 61 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDED------A--------------------PVYKKVG-N 61 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------c--------------------HHHHHhh-h
Confidence 33334445555555677889999999999999999988887531 1 2333333 3
Q ss_pred eeeeeCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 134 VMLEYSCDEA-------TVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 134 VmvEy~ldEA-------~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.|.-+-++| .++|+.|++.++++.+.+++.++.|+..|
T Consensus 62 llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 62 LLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 55666666666666667777777766654
No 19
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.014 Score=53.76 Aligned_cols=90 Identities=19% Similarity=0.269 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 83 DIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLI 162 (180)
Q Consensus 83 ei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~ 162 (180)
+..+.++-+..|-++- ...+++|||.-.|+-.++--|..|.+.+|+|++-+-+.--|.++++.|++.+.++++.+.
T Consensus 28 dye~~~erl~~~~kkL----s~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~~CS~h~A~~I~~~R~~~~r~q~~~l~ 103 (514)
T KOG3130|consen 28 DYEALRERLSTLPKKL----SYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFAKCSAHQAVGIVEHRKEHVRKQIDDLK 103 (514)
T ss_pred hHHHHHHHHHHhhhhc----ccceeeecccccccccceeeechhhhhhccchHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666776542 488999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhcceee
Q 030290 163 ADLQFLRDQVTITQ 176 (180)
Q Consensus 163 edL~~lrdQiTt~E 176 (180)
..+.-+-.++..++
T Consensus 104 ~~~~n~~~~vkf~~ 117 (514)
T KOG3130|consen 104 KVMKNFESRVKFTE 117 (514)
T ss_pred HHHHhhHHHhhhcc
Confidence 88888777776543
No 20
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=96.26 E-value=0.028 Score=42.89 Aligned_cols=106 Identities=14% Similarity=0.196 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc--------------CCCceeEEEEcCccee
Q 030290 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE--------------GGEALTADFEVSEGIF 115 (180)
Q Consensus 50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~--------------~~e~~et~f~L~d~~y 115 (180)
...++.++..++..+..-..+..++..+..-+..+ +.+.......+ -.+.-++.++||+|+|
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l----~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~ 80 (129)
T cd00584 5 AAQLQVLQQEIEELQQELARLNEAIAEYEQAKETL----ETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY 80 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence 34566777777777777777777777776555444 44443222211 1234778999999999
Q ss_pred EEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 116 ~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.-.++... -.++.-++.|+++++.+++.+..+...+..+.+.+
T Consensus 81 vE~~~~eA~-------------~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 81 VEKDLEEAI-------------EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred EEecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998655 46899999999999999999999999999998865
No 21
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=96.20 E-value=0.044 Score=42.57 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeee
Q 030290 58 ERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLE 137 (180)
Q Consensus 58 e~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvE 137 (180)
..++++..+-..++++...|..++..+...+.-++..... ++ +.++. .+..+|++-||+++++.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~------l~---------~l~~~-~~~~e~lvplg~~~yv~ 69 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET------LE---------ELKSK-GEGKETLVPIGAGSFVK 69 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------hhccc-CCCCeEEEEcCCCcEEE
Confidence 3444555555556777777888888777777766655432 22 11221 14567888888888887
Q ss_pred eCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 138 YSCDEATV-------------LLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 138 y~ldEA~~-------------lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
-++.+..+ -+.+-++.++++++.+++.++.+.+++.
T Consensus 70 ~~v~~~~kV~v~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~ 118 (140)
T PRK03947 70 AKVKDKDKVIVSLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQ 118 (140)
T ss_pred EEecCCCeEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765544 4567777777777777777777777654
No 22
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=95.69 E-value=0.089 Score=39.98 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCH
Q 030290 61 QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSC 140 (180)
Q Consensus 61 ~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~l 140 (180)
+++..+-..+++++..|..++.++..++.-++....- +.. .+.. +...+++-||+++++.-++
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~------L~~---------l~~~--~~~~~lv~lg~~~~v~~~v 64 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIET------LED---------LKGA--EGKETLVPVGAGSFVKAKV 64 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHh---------cccc--CCCeEEEEcCCCeEEEEEe
Confidence 3455555677778888888888888888877776532 211 1222 3468888889999888888
Q ss_pred HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 141 DEAT-------------VLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 141 dEA~-------------~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
++.. .-+.+-++.++++++.+.+.++.|...+.
T Consensus 65 ~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~ 110 (126)
T TIGR00293 65 KDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALA 110 (126)
T ss_pred CCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876 55677788888888888888888877653
No 23
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=3.9 Score=31.69 Aligned_cols=94 Identities=14% Similarity=0.299 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEE
Q 030290 52 ALAFLQERLQQYKLVEMK---LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (180)
Q Consensus 52 ~l~~lqe~~~kYk~me~~---l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~L 128 (180)
..+.+++...||+.++.. +...+..|..++.+-+--++=+..|.. ..+||=
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~--------------------------d~~VYK 56 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEE--------------------------DSNVYK 56 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc--------------------------cchHHH
Confidence 456788888888888774 345566677777777766666666642 234554
Q ss_pred EeccceeeeeCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 129 WLGANVMLEYSCDEATV-------LLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 129 wLGAnVmvEy~ldEA~~-------lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.+| .|-|--+++||+. |+.+.++.+++++...+++....|+-+
T Consensus 57 liG-pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v 106 (120)
T KOG3478|consen 57 LIG-PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAV 106 (120)
T ss_pred Hhc-chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5888889999975 555556667777777777777776644
No 24
>PRK14011 prefoldin subunit alpha; Provisional
Probab=78.46 E-value=22 Score=28.27 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=38.5
Q ss_pred CceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 102 EALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 102 e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
++-++.++||.|+|+.=.+++.-. .++.=++.|+++.+.+...+++++..++.|+.
T Consensus 68 d~dkVlVdIGtGy~VEk~~~eA~~-------------~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~ 123 (144)
T PRK14011 68 DPDKAILGVGSDIYLEKDVSEVIE-------------DFKKSVEELDKTKKEGNKKIEELNKEITKLRK 123 (144)
T ss_pred CCCeEEEEccCCeEEEecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888877765321 35666667777777777777777777766663
No 25
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=77.05 E-value=6.1 Score=26.66 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 030290 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (180)
Q Consensus 55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v 91 (180)
.|+++..|++-|...+..++..+-.+|.++++++.-+
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5677778999999999999999999999999997644
No 26
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=36 Score=26.91 Aligned_cols=82 Identities=20% Similarity=0.378 Sum_probs=40.4
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHH
Q 030290 70 LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQK 149 (180)
Q Consensus 70 l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~ 149 (180)
+...+...+.++..|..+.+=|..+.. ++-.+.|.+|+ +|+....+.+ .=-+++..+-|.+
T Consensus 35 lk~dik~~k~~~enledA~~EieL~De-----dd~~Ip~~vGd-vF~~~~~~~~-------------~~~LEe~ke~l~k 95 (131)
T KOG1760|consen 35 LKADIKEAKTEIENLEDASNEIELLDE-----DDEDIPFKVGD-VFIHVKLDKL-------------QDQLEEKKETLEK 95 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhcCc-----cccccceehhh-hheeccHHHH-------------HHHHHHHHHHHHH
Confidence 344444455555566666666655532 22334476665 3333322211 1124555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030290 150 NLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 150 ~l~~a~~~l~~~~edL~~lrd 170 (180)
.++.++...+.+..+++.|+.
T Consensus 96 ~i~~les~~e~I~~~m~~LK~ 116 (131)
T KOG1760|consen 96 EIEELESELESISARMDELKK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555553
No 27
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.92 E-value=12 Score=31.55 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=16.1
Q ss_pred HHHHHHHhchhhHHHHHHHHHHH
Q 030290 72 AQQRDLQAKIPDIEKCLDIVATL 94 (180)
Q Consensus 72 ~q~~~L~~kipei~~aLe~v~~L 94 (180)
+-.+.|-++|-+|++.+++++.|
T Consensus 199 ~pv~~La~qir~irRlve~lesl 221 (222)
T KOG4514|consen 199 KPVEQLAQQIRQIRRLVEMLESL 221 (222)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777787777777665
No 28
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=74.30 E-value=12 Score=27.27 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhchhhHHHHHHHHHH
Q 030290 48 DVNSALAFLQERLQQYKLV-------------EMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~m-------------e~~l~~q~~~L~~kipei~~aLe~v~~ 93 (180)
++...+..++.+|+.|..+ ...|..-+..++..+.|+++++.+++.
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888899999999999886 447888888888888899988888754
No 29
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=74.00 E-value=8.9 Score=28.97 Aligned_cols=51 Identities=12% Similarity=0.220 Sum_probs=42.9
Q ss_pred eCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 120 IEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 120 I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
+-+.+.|-.-||-+-++..+.+.++.+|.+|+.-.++++..++..|..-.+
T Consensus 46 lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~ 96 (99)
T PF13758_consen 46 LVTEKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAEN 96 (99)
T ss_pred cccHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666789999999999999999999999999999999988876543
No 30
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=72.89 E-value=6.1 Score=36.07 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=54.0
Q ss_pred HhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHH
Q 030290 78 QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKAS 157 (180)
Q Consensus 78 ~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~ 157 (180)
+.+|=||...||-|..++++ ...=+-|.|.|++---...|=...|+.+++.+...
T Consensus 105 KRRIYDITNVLEGI~LIeKk-------------------------sKN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~ 159 (354)
T KOG2577|consen 105 KRRIYDITNVLEGIGLIEKK-------------------------SKNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQE 159 (354)
T ss_pred cceeeehhhhhhcccceeec-------------------------cccceeeecCCCccccccHHHHHHHHHHHHHHHHH
Confidence 56777999998888888764 24567899999997555667777788888888777
Q ss_pred HHHHHHHHHHHHhhcc
Q 030290 158 LEVLIADLQFLRDQVT 173 (180)
Q Consensus 158 l~~~~edL~~lrdQiT 173 (180)
-+.+.+-+.+.++++.
T Consensus 160 E~~LD~~i~~~q~~L~ 175 (354)
T KOG2577|consen 160 EDDLDQLIRDCQQNLR 175 (354)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777654
No 31
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=71.52 E-value=4.9 Score=26.34 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
+..||+++|+......+..++.+.+.++.|..
T Consensus 2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~ 33 (46)
T PF08946_consen 2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEA 33 (46)
T ss_dssp -------------THHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHH
Confidence 35789999999888888888888887777654
No 32
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=64.91 E-value=4.7 Score=27.07 Aligned_cols=19 Identities=11% Similarity=0.539 Sum_probs=14.0
Q ss_pred cceeEEEEeCCCCeEEEEeccc
Q 030290 112 EGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 112 d~~y~kA~I~~td~V~LwLGAn 133 (180)
+++|+ +....+|++|+|.+
T Consensus 18 ~~~yI---ld~~~~i~vW~G~~ 36 (76)
T PF00626_consen 18 DDCYI---LDCGYEIFVWVGKK 36 (76)
T ss_dssp TSEEE---EEESSEEEEEEHTT
T ss_pred CCEEE---EEeCCCcEEEEecc
Confidence 45554 34466999999999
No 33
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=63.61 E-value=18 Score=28.20 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQ 166 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~ 166 (180)
++==++.|+++-+.+...++.++..|.
T Consensus 82 Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 82 LELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666554
No 34
>PRK01203 prefoldin subunit alpha; Provisional
Probab=62.73 E-value=7.7 Score=30.60 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh-------------cCCCceeEEEEcCcce
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK-------------EGGEALTADFEVSEGI 114 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~-------------~~~e~~et~f~L~d~~ 114 (180)
++++.++.++++.+-++..-..|..-+..+..- .++|+.+..=..+. .-.++-++.+.+|.|.
T Consensus 4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~----ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy 79 (130)
T PRK01203 4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQT----ISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGV 79 (130)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCe
Confidence 456667777777777777766666666666553 34443343212210 0123456788888888
Q ss_pred eEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 115 FSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLR 169 (180)
Q Consensus 115 y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lr 169 (180)
|+.=.+++ -++ .+.+=.+=|++-+.....+++.+.+-+..|.
T Consensus 80 ~VEK~~e~------------kie-~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 80 YIAEERER------------TIE-RLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred EEEecHHH------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877663 222 2333344444444455555555555555555
No 35
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=61.36 E-value=36 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 030290 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (180)
Q Consensus 55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~ 90 (180)
.||....||+-|...+-.+...+-.+|.|+++.+.-
T Consensus 24 lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaD 59 (73)
T KOG4117|consen 24 LLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIAD 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 566667899999999999999999999999998763
No 36
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.19 E-value=59 Score=23.10 Aligned_cols=99 Identities=18% Similarity=0.169 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEe
Q 030290 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWL 130 (180)
Q Consensus 51 ~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwL 130 (180)
+.+..|+.+.++|..+...+.+-...+ ..+-...+.|+.+..=.. ++..+ +++|++-.++.
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~-~~~~~~~~eL~~l~~~~~---------~y~~v-G~~fv~~~~~~-------- 62 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQL-RELELTLEELEKLDDDRK---------VYKSV-GKMFVKQDKEE-------- 62 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSTT-E---------EEEEE-TTEEEEEEHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcch---------hHHHH-hHHHHHhhHHH--------
Confidence 345666777777776666555443333 244445555555544332 23333 55677665543
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 131 GAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.-.+++-.+.++..++.+++.+..+...+..++..+.
T Consensus 63 -----~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 63 -----AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22368899999999999999999999999999888764
No 37
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.70 E-value=89 Score=28.20 Aligned_cols=95 Identities=23% Similarity=0.304 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (180)
Q Consensus 52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG 131 (180)
-|..+|....+||.|.+.|+.+...|+.+..++.-- -. -|-...++|..
T Consensus 17 eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~-------~~-----------------~~~d~~~~~~~------- 65 (319)
T PF09789_consen 17 ELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQE-------AA-----------------GFGDPSIPPEK------- 65 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hc-----------------ccCCccCCccc-------
Confidence 367888999999999999999999988877655421 00 01111122221
Q ss_pred cceeeee---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeee
Q 030290 132 ANVMLEY---SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (180)
Q Consensus 132 AnVmvEy---~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EV 177 (180)
-++-+.- ..-|.-.-|...++.+...+.++..|+.-||.++....|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 1111111 233445567777888999999999999999998766543
No 38
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=58.54 E-value=14 Score=27.10 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=30.9
Q ss_pred eeCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhc
Q 030290 137 EYSCDEATVLLQKNLE------NAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 137 Ey~ldEA~~lL~~~l~------~a~~~l~~~~edL~~lrdQi 172 (180)
-|+++++.++|...-. .+...+..+..+|..||+|+
T Consensus 58 G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (99)
T cd04765 58 GYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELLDLRDQL 99 (99)
T ss_pred CCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHhcC
Confidence 3699999999987644 48999999999999999985
No 39
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=53.01 E-value=23 Score=27.52 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=31.2
Q ss_pred CCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 24 TERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQ 74 (180)
Q Consensus 24 ~~~~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~ 74 (180)
.-|||||+..+ .++-|++.- ....++-+.|...-++|-..-..+...+
T Consensus 26 lWPRGi~Ke~~--~~D~W~Kdi-APS~eLRkwf~Hdp~~w~~F~~rY~~EL 73 (117)
T COG3189 26 LWPRGIKKEDL--ALDLWLKDI-APSTELRKWFHHDPKKWDEFRERYRAEL 73 (117)
T ss_pred cCCCCCChhhh--hHHHHHhhc-CCCHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45999999999 778899764 3344555566655566655555444443
No 40
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.36 E-value=2.1e+02 Score=28.70 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 030290 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATL 94 (180)
Q Consensus 27 ~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L 94 (180)
.|+|. ..|+.-..++...+.+++.+|..|.+.-.+|......+.+.+..++....++++-++-++.-
T Consensus 497 ~Glp~-~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 497 LGLPE-NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred hCcCH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46765 36788888887655789999999999888888888877777777777777777666655443
No 41
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=50.70 E-value=55 Score=25.63 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=35.5
Q ss_pred HhccCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 030290 41 FLSQLD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 41 ~~~~~~--~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~ 92 (180)
|+.+++ .-+..+-+.|+..+....-.-..|.+|+.+|-.|+.+..+..+.++
T Consensus 35 ~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 35 FVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666664 3455566777777777777777888888888877776666554443
No 42
>PRK11637 AmiB activator; Provisional
Probab=50.05 E-value=2e+02 Score=26.16 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030290 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (180)
Q Consensus 141 dEA~~lL~~~l~~a~~~l~~~~edL~~lrdQ 171 (180)
...+.-++.++..+++.+..++.+|+..+++
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544443
No 43
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=49.69 E-value=3.2 Score=35.30 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhchhhHHHHHHHHHHHHhhhcCCC
Q 030290 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQ-----QRDLQAKIPDIEKCLDIVATLQAKKEGGE 102 (180)
Q Consensus 28 gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q-----~~~L~~kipei~~aLe~v~~L~~k~~~~e 102 (180)
+.|+..-+..|.+....++.++-.-|.+|.+.|.+|--+.-.-..+ ..-+.+.-|||.+-|+-++.+.. .
T Consensus 119 aa~Kp~NlsKv~~v~Qg~~EsPs~FLeRL~ea~r~yTp~dP~~~~~~~~v~~~Fi~QsapDIrkKLq~~eg~~~-----~ 193 (211)
T PF02093_consen 119 AARKPTNLSKVREVTQGPNESPSAFLERLREAYRKYTPFDPESPEGQASVAMSFITQSAPDIRKKLQKLEGLQG-----K 193 (211)
T ss_dssp HHHH-----S--TTTTTGGGHHHHHHHHHHHHHHHTS-------------------------------------------
T ss_pred cCCCCccHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHhccHHHHHHHHhhcCccc-----C
Confidence 4566666777788887776678888999999999998775422222 23446677999999999998874 3
Q ss_pred ceeEEEEcCcceeEE
Q 030290 103 ALTADFEVSEGIFSR 117 (180)
Q Consensus 103 ~~et~f~L~d~~y~k 117 (180)
++.=++.++..||.+
T Consensus 194 ~l~~Ll~~A~kVf~~ 208 (211)
T PF02093_consen 194 TLSELLKEAEKVFNN 208 (211)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHhc
Confidence 577788888888864
No 44
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=1.5e+02 Score=23.73 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc--------------CCCceeEEEEcCcc
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE--------------GGEALTADFEVSEG 113 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~--------------~~e~~et~f~L~d~ 113 (180)
+++.+...+|.+-++-..+...+ ..++....++....++|+.++....+++ -...-++.|+||.|
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i-~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg 85 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQI-AALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG 85 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence 45555555555555555554444 4566777788888999999999996432 01236788888888
Q ss_pred eeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 114 IFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 114 ~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+|+.=.... .+|| ++.=++-|++.+..+...+..+...+..|+.+.
T Consensus 86 ~~ae~~~~e------------Aie~-l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 86 YYAEKSADE------------AIEF-LKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred eeeeecHHH------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888866533 3333 455555566666666666666666555555543
No 45
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.66 E-value=65 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+++...-|+.+.+..+..++.+.++|+.|.+..+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777776543
No 46
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=42.83 E-value=48 Score=25.95 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~ 175 (180)
.+..|++.|..|+..+..++++..+-..-++++++.+
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v 94 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV 94 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4678888899999988888888888888777777543
No 47
>PRK09343 prefoldin subunit beta; Provisional
Probab=42.32 E-value=57 Score=24.90 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEecc
Q 030290 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (180)
Q Consensus 53 l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGA 132 (180)
++.++..++++...-..+..+++..+.-+.+++..=+--...+ +-+.+|++...++.
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk--------------~VG~vlv~qd~~e~--------- 72 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYK--------------IVGNLLVKVDKTKV--------- 72 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH--------------HhhHHHhhccHHHH---------
Confidence 3445555556666666777888887777777766432222222 11235555544332
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
--++.+-+++++.+++.++++.+.+++.+..+++++.
T Consensus 73 ----~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 73 ----EKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2267899999999999999999999999999988874
No 48
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.95 E-value=2.4e+02 Score=24.70 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=25.9
Q ss_pred ceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeee
Q 030290 103 ALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEY 138 (180)
Q Consensus 103 ~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy 138 (180)
++-+..+.++.+++++.||+.+--.+-.|..|.+.+
T Consensus 299 ~l~~i~~~~~~~~v~~~v~~~~~~~i~~G~~v~v~~ 334 (423)
T TIGR01843 299 TLMEIVPEDDPLEIEAKLSPKDIGFVHVGQPAEIKF 334 (423)
T ss_pred eeEEEecCCCcEEEEEEEChhhhhhhCCCCceEEEE
Confidence 344445556678999999988877777787777654
No 49
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=40.53 E-value=1.3e+02 Score=21.99 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v 91 (180)
+++++++.++.....++..-..+..++..++.++..+...++.+
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999988888877654
No 50
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=40.05 E-value=1.1e+02 Score=22.48 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 030290 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (180)
Q Consensus 27 ~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v 91 (180)
++++.+..-..|..|..+. ++...+. ++..+.+.....+.+.....-.++|.....|..|
T Consensus 14 ~~lt~~e~~~~l~~Wa~~~--~v~~~~~---~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I 73 (113)
T PF02520_consen 14 PNLTKAEIEEQLDEWAEKY--GVQDQYN---EFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAI 73 (113)
T ss_pred CCCCHHHHHHHHHHHHHHC--CcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999876 3444333 3334444445556666666677777554444433
No 51
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.01 E-value=3.5e+02 Score=27.07 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=45.2
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 030290 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (180)
Q Consensus 28 gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~ 93 (180)
|+|. ..|+.-..++...+.+++.+|..|.+.-.+|......+.+.+..++....++++-++-++.
T Consensus 493 Glp~-~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 493 GIPH-FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred CcCH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4677777887665467888888888888888877777777766666666666665554444
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.44 E-value=54 Score=30.82 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc
Q 030290 20 ASPTTERRGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE 99 (180)
Q Consensus 20 ~~~~~~~~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~ 99 (180)
..+.+..|.+|+ .++|+..+ |...++..|.-...-=..-|..++.=+.----.+.|.+++++.-+.+..+
T Consensus 17 ~~~~kkarK~P~------Ledfls~r--DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-- 86 (557)
T KOG3785|consen 17 GPTIKKARKMPE------LEDFLSNR--DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-- 86 (557)
T ss_pred CCcchhhhcCch------HHHHHhcc--cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--
Confidence 345667788888 69999887 67777776666554444444577777777777899999999999999875
Q ss_pred CCCceeEEEEcCcc
Q 030290 100 GGEALTADFEVSEG 113 (180)
Q Consensus 100 ~~e~~et~f~L~d~ 113 (180)
...+.+.-+.|+..
T Consensus 87 ~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 87 DDAPAELGVNLACC 100 (557)
T ss_pred CCCCcccchhHHHH
Confidence 34456666666553
No 53
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=38.73 E-value=99 Score=20.12 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=24.1
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLR 169 (180)
Q Consensus 138 y~ldEA~~lL~~~l~~a~~~l~~~~edL~~lr 169 (180)
.+.++...+|..+++.+.++++.+..-...|.
T Consensus 32 ~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 32 PPCADRRALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888888888888887776665554
No 54
>PF15219 TEX12: Testis-expressed 12
Probab=38.31 E-value=95 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 030290 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (180)
Q Consensus 53 l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aL 88 (180)
+..++.+++.-+-+|..|.++++.|++++.=|..+|
T Consensus 63 i~eiD~lfkEA~~lEnfLkqkre~LrQrlt~isntL 98 (100)
T PF15219_consen 63 ITEIDGLFKEANALENFLKQKRECLRQRLTVISNTL 98 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777888888888888888877666654
No 55
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=37.97 E-value=61 Score=24.34 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 142 EATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
|++.++-.......+.+..++.++..|++.++++.
T Consensus 1 ~~i~l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~ 35 (116)
T PF10552_consen 1 QQIKLLMQATEEHNEKIEEVENRVDDLEENMPIDP 35 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 46788888899999999999999999999988753
No 56
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.66 E-value=52 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=27.1
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIAD 164 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~ed 164 (180)
++.|++++++++-|+.++..+++.++++.+.
T Consensus 234 ~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~ 264 (406)
T PF02388_consen 234 FLAELNGKEYLESLQEKLEKLEKEIEKLEEK 264 (406)
T ss_dssp EEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999888888888876
No 57
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.61 E-value=1.2e+02 Score=25.90 Aligned_cols=89 Identities=16% Similarity=0.271 Sum_probs=51.9
Q ss_pred CCCCCCCcccccccHH-HHhccCCcCHHHHH-HHH-HHHHHHHHHHHH-----HHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 24 TERRGIPAAQFVEDVQ-TFLSQLDLDVNSAL-AFL-QERLQQYKLVEM-----KLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 24 ~~~~gIP~a~FiedV~-~~~~~~~~~~e~~l-~~l-qe~~~kYk~me~-----~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
.-.|.||=| |.|+|. .|++..|+.+..++ ..+ .|.-+.++++-+ --..++.+++.++.+++.- |++.++
T Consensus 70 s~gR~ipfa-FLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~v--M~eNIe 146 (217)
T KOG0859|consen 70 SAGRQIPFA-FLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKGV--MMENIE 146 (217)
T ss_pred cccccccHH-HHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHH--HHHHHH
Confidence 445889976 999985 58887764444332 122 222233333222 1156777788888887764 344444
Q ss_pred hhhcCCCceeEEEEcCccee
Q 030290 96 AKKEGGEALTADFEVSEGIF 115 (180)
Q Consensus 96 ~k~~~~e~~et~f~L~d~~y 115 (180)
+-.+.++.++.+++=.++++
T Consensus 147 kvldRGekiELLVdKTenl~ 166 (217)
T KOG0859|consen 147 KVLDRGEKIELLVDKTENLR 166 (217)
T ss_pred HHHhccCeEEeeechhhhhh
Confidence 33345788999887555544
No 58
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=37.29 E-value=1.3e+02 Score=23.48 Aligned_cols=62 Identities=11% Similarity=0.212 Sum_probs=30.0
Q ss_pred CCCCCcccccccHHHHhcc---------------CC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 030290 26 RRGIPAAQFVEDVQTFLSQ---------------LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87 (180)
Q Consensus 26 ~~gIP~a~FiedV~~~~~~---------------~~--~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~a 87 (180)
++..|...|-+++..|... || .+.+..++++.++..+.+..+..+.+.++.-..-+..++.+
T Consensus 59 ~~~~~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 59 PAPDPPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777887766655422 33 34555566666666666666655555444444333333333
No 59
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=37.22 E-value=87 Score=25.16 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=40.5
Q ss_pred CCC--cccccccHHHHhccCCcCHHHHHHHHHHHHH------------------------------HHHHHHH-----HH
Q 030290 28 GIP--AAQFVEDVQTFLSQLDLDVNSALAFLQERLQ------------------------------QYKLVEM-----KL 70 (180)
Q Consensus 28 gIP--~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~------------------------------kYk~me~-----~l 70 (180)
-|| ....+.++|.-...-..+++..++.|+-.++ -|++|.. .=
T Consensus 45 ~~P~id~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~ 124 (149)
T PF10157_consen 45 SIPPIDPAVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNES 124 (149)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377 4567777776554322467777766665542 3444443 22
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHH
Q 030290 71 LAQQRDLQAKIPDIEKCLDIVATL 94 (180)
Q Consensus 71 ~~q~~~L~~kipei~~aLe~v~~L 94 (180)
.+.+..|..+|-+|++.|+.++.+
T Consensus 125 M~~v~~La~qIK~Ik~~lD~lE~~ 148 (149)
T PF10157_consen 125 MKPVYKLAQQIKDIKKLLDLLESL 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777888888888777643
No 60
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.83 E-value=93 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
.+++-++.|+.+++.++++++.+...+..++..|-
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999988764
No 61
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.83 E-value=94 Score=22.87 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
++++...+|..++..++..++.++.-++.|...+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 76 TIPERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998887654
No 62
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.76 E-value=1.3e+02 Score=20.70 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 141 dEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
++.++-|++-+..-.+.++.++..+..|++++..++
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666667777777777777766543
No 63
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.45 E-value=76 Score=22.50 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=23.9
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 138 y~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
++++++..+|. +.++++.++..+..|++++
T Consensus 59 ~~l~~i~~~l~-----l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 59 VNLAGVKRILE-----LEEELAELRAELDELRARL 88 (91)
T ss_pred CCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh
Confidence 48888888876 8888888888888888765
No 64
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=36.07 E-value=27 Score=24.36 Aligned_cols=15 Identities=13% Similarity=0.607 Sum_probs=12.1
Q ss_pred CCCCeEEEEecccee
Q 030290 121 EDTDSVCLWLGANVM 135 (180)
Q Consensus 121 ~~td~V~LwLGAnVm 135 (180)
...+.|++|+|.+..
T Consensus 32 d~~~~iyvW~G~~as 46 (90)
T smart00262 32 DTGSEIYVWVGKKSS 46 (90)
T ss_pred ECCCEEEEEECCCCC
Confidence 346799999999974
No 65
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=35.07 E-value=2.6e+02 Score=23.16 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 030290 50 NSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (180)
Q Consensus 50 e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k 97 (180)
.+-++.|++.+.+++..+..+.+++......+--++..+.-+..|-..
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~d 114 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSED 114 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345688999999999999999998888888888777777777766543
No 66
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=34.13 E-value=2e+02 Score=21.53 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCC-CceeEEEE--cCcc-eeEEEEeCCCCeEEEEeccceeeeeCHHH
Q 030290 67 EMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGG-EALTADFE--VSEG-IFSRARIEDTDSVCLWLGANVMLEYSCDE 142 (180)
Q Consensus 67 e~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~-e~~et~f~--L~d~-~y~kA~I~~td~V~LwLGAnVmvEy~ldE 142 (180)
-+..+++..+|+.=|-+++.--+.|+.+..+-..+ =+-.+.|. |||. .|.+.. |-+ +.--
T Consensus 11 I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~~i~~~~Kf~~~L~~~~~~~~~~------~~I----------~VGT 74 (102)
T PF07097_consen 11 IAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNNHIKKDTKFELNLGDRFGVLKCS------VKI----------NVGT 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCcchhceecccccceEEEe------eec----------chhh
Confidence 34677888888888888888888888877652111 12223332 2322 223322 222 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030290 143 ATVLLQKNLENAKASLEVLIADL 165 (180)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL 165 (180)
-+.+|++|++.-..-..++-..|
T Consensus 75 LI~LL~~NIE~NT~l~~EL~~~L 97 (102)
T PF07097_consen 75 LIPLLEQNIEDNTTLISELAKEL 97 (102)
T ss_pred hhHHHHhccccchHHHHHHHHHh
Confidence 56778888776665555554443
No 67
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=33.89 E-value=1.8e+02 Score=20.91 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
..++..-|.++++.++..+..++..+.-++.++.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666655554
No 68
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.69 E-value=97 Score=22.97 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=58.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCe
Q 030290 49 VNSALAFLQE---RLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDS 125 (180)
Q Consensus 49 ~e~~l~~lqe---~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~ 125 (180)
++..+..|+. .++++...-..+..++.....-+-++...=+--+..+. -+++|++-.+.+.-
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~--------------VG~vlv~~~~~e~~- 69 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKS--------------VGNLLVKTDKEEAI- 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHH--------------hchhhheecHHHHH-
Confidence 4444444444 45555555556666776666655555543222222221 12366665544321
Q ss_pred EEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 126 VCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 126 V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
-.+++=+++++.+++.++++++.+++.+..++.++.
T Consensus 70 ------------~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 ------------QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 156777888888888888888888888888887764
No 69
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=33.18 E-value=33 Score=32.67 Aligned_cols=32 Identities=38% Similarity=0.367 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 144 TVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
.++++ +++.|++++++++++++.+.+++..+|
T Consensus 27 ~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 27 IDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 34556 899999999999999888888877655
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.04 E-value=68 Score=30.61 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred CHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHhchhhHHHHHHHH---------HHHHhhhcCCCceeEEEE
Q 030290 48 DVNSAL-AFLQERLQQYKLVEM--------KLLAQQRDLQAKIPDIEKCLDIV---------ATLQAKKEGGEALTADFE 109 (180)
Q Consensus 48 ~~e~~l-~~lqe~~~kYk~me~--------~l~~q~~~L~~kipei~~aLe~v---------~~L~~k~~~~e~~et~f~ 109 (180)
.+...+ .+|+++..-|+.|.. .+..++..|+.+|-+....|.-+ +.+... +..++.
T Consensus 223 ~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~------Id~Lyd 296 (569)
T PRK04778 223 ELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQER------IDQLYD 296 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH------HHHHHH
Confidence 344545 677888888888886 67888888888777744443333 222211 111110
Q ss_pred cCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 110 VSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 110 L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+ |=..+-.-..++....-+.+.+..+..+...+...++.|+...+
T Consensus 297 ~-------------------lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 297 I-------------------LEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred H-------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 0 00011111122455555666677777777777777777776644
No 71
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.03 E-value=72 Score=29.54 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=26.2
Q ss_pred eEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 125 ~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
.+|---|-.+.=. +.....|.+++..++..++.+.+.+..+..
T Consensus 285 ~~Cp~C~~~~~~~---~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 285 GVCPTCTQQISEG---PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred CCCCCCCCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 666777777777777777777777664443
No 72
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.65 E-value=1.3e+02 Score=24.61 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=12.1
Q ss_pred CCcccccccHHHHhccC
Q 030290 29 IPAAQFVEDVQTFLSQL 45 (180)
Q Consensus 29 IP~a~FiedV~~~~~~~ 45 (180)
.|...=++||=.|+..-
T Consensus 76 ~~~~ltl~~vI~fLq~l 92 (161)
T TIGR02894 76 EAGSLTLQDVISFLQNL 92 (161)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 45666688888888654
No 73
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=32.37 E-value=1.1e+02 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
++++-.++|..+++.+...++.+++.++.+.+.|-.
T Consensus 82 t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvs 117 (175)
T PRK13182 82 ISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVS 117 (175)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566889999999999999999999999998887643
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=31.28 E-value=1.2e+02 Score=29.89 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
.++.+..=|+..+..++.....+.+.|..+|.+|...+
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888888888888888888888876553
No 75
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.80 E-value=1.7e+02 Score=22.40 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q 030290 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDI 90 (180)
Q Consensus 55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~ 90 (180)
.|....+..+....+..+++..|+.+|.|+.+.++.
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777888889999999999999999998886
No 76
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=29.30 E-value=54 Score=28.46 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 030290 154 AKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 154 a~~~l~~~~edL~~lrdQiT 173 (180)
|-+.+..++.+|.+||.||-
T Consensus 120 AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQIA 139 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888884
No 77
>PF13864 Enkurin: Calmodulin-binding
Probab=29.09 E-value=1.4e+02 Score=21.75 Aligned_cols=38 Identities=13% Similarity=0.290 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHhchhhHHHHHHHHH
Q 030290 55 FLQERLQQYKLVEM-----KLLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 55 ~lqe~~~kYk~me~-----~l~~q~~~L~~kipei~~aLe~v~ 92 (180)
+.+++..+|+.|=- ....++..|+.++-+|+++|..+.
T Consensus 52 ~~~el~~ey~~lp~~~DT~~~~~rK~~lE~~L~qlE~dI~~ls 94 (98)
T PF13864_consen 52 NWDELNKEYQKLPFSIDTLRKKRRKEELEKELKQLEKDIKKLS 94 (98)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445555554432 677889999999999999988764
No 78
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=28.73 E-value=51 Score=27.51 Aligned_cols=58 Identities=9% Similarity=0.293 Sum_probs=48.2
Q ss_pred CCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q 030290 28 GIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIE 85 (180)
Q Consensus 28 gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~ 85 (180)
...-+.|..+|-+||.....+.+..+.--..++.+|.|=...+..|...+---++.+.
T Consensus 36 klsm~dFsk~I~~YmeeNNISqeKf~niQkk~mERYGfd~~~iE~q~K~~Gid~~~~~ 93 (186)
T PF12983_consen 36 KLSMADFSKKIMEYMEENNISQEKFLNIQKKFMERYGFDPSEIEKQMKSMGIDMSSLN 93 (186)
T ss_pred cccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccccc
Confidence 3456889999999998776788999998889999999999999999998865555444
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.52 E-value=3.9e+02 Score=23.13 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 142 EATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
-.+..+++++.++...+..+.+.+..++++|
T Consensus 96 ~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 96 IEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555444
No 80
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.46 E-value=1.4e+02 Score=22.00 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=30.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 137 Ey~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.+.++..++|+.++..++.++..+..-.+.|.+.+
T Consensus 76 ~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 76 FRPCPDLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346678889999999999999999999888887654
No 81
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=28.19 E-value=1.3e+02 Score=23.78 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 141 dEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+|..-.|-.+++.+..++..+...+..||+|-.
T Consensus 99 ed~L~~llaqLealsqqL~~ls~qv~~L~~~~~ 131 (135)
T PHA03385 99 EDKLLVLLAQLEALSQQLQELSQQVAQLREQTQ 131 (135)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 788888899999999999999999999999864
No 82
>PRK14127 cell division protein GpsB; Provisional
Probab=27.96 E-value=1.5e+02 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhchhhHHH
Q 030290 69 KLLAQQRDLQAKIPDIEK 86 (180)
Q Consensus 69 ~l~~q~~~L~~kipei~~ 86 (180)
.|..+..+|+.++.+++.
T Consensus 48 ~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 48 ELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555444
No 83
>PRK00846 hypothetical protein; Provisional
Probab=27.91 E-value=1.3e+02 Score=21.54 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 141 dEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
++.++-|++-+....+.++.+...+..|.+++..++
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777777777777777777776665
No 84
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=27.24 E-value=1.7e+02 Score=21.10 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 141 DEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 141 dEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
++...+|..+...+..+++.++..++.|..
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999888888764
No 85
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=26.77 E-value=1.8e+02 Score=22.00 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.++...+|..++..++.+++.++.-...|.+-+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 76 SCSDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999888777776543
No 86
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=26.56 E-value=3.1e+02 Score=28.05 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhc----------CCCceeEEEEcCcceeEEE
Q 030290 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKE----------GGEALTADFEVSEGIFSRA 118 (180)
Q Consensus 49 ~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~----------~~e~~et~f~L~d~~y~kA 118 (180)
+|.+|+..|+....-+++| +++.+..+||+... +|.+.|.+|.. ++.=+...=.||=|.|-++
T Consensus 573 VEnvlksyqqr~~Rk~QLE------kEM~kagLpd~~q~-qMrkmL~QKESnYiRLkRaKMdKSmFvkik~iGvGAFGeV 645 (1034)
T KOG0608|consen 573 VENVLKSYQQREKRKKQLE------KEMVKAGLPDIMQN-QMRKMLQQKESNYIRLKRAKMDKSMFVKIKTIGVGAFGEV 645 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHhcCCHHHHH-HHHHHHHhhhhhHHHHHHhhccccceEEEeeeccccccee
Confidence 6666666666555555544 46678888988764 67777776521 1112444456788888766
Q ss_pred EeCC-CCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHH
Q 030290 119 RIED-TDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVL 161 (180)
Q Consensus 119 ~I~~-td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~ 161 (180)
++-. .|+ --+..-.+|.-|--|+..+....+...+.+
T Consensus 646 ~Lv~KvDT------~~lYAmKTLrKaDVl~rnQvaHVKAERDIL 683 (1034)
T KOG0608|consen 646 CLVRKVDT------RALYAMKTLRKADVLMRNQVAHVKAERDIL 683 (1034)
T ss_pred EEEeecch------hhHHHHhhhHHHHHHhhhhhhhhhhhhhhH
Confidence 5522 111 012233455555555555555555444433
No 87
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.38 E-value=1.8e+02 Score=22.46 Aligned_cols=48 Identities=23% Similarity=0.175 Sum_probs=37.8
Q ss_pred eEEEEeccceeee-------------eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 125 SVCLWLGANVMLE-------------YSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 125 ~V~LwLGAnVmvE-------------y~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.||-.+|-=+|++ .+.+|+++-|+++.+-++++..+.+..|..|..++
T Consensus 51 ~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nLrellqs~ 111 (114)
T KOG3501|consen 51 AVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNLRELLQSR 111 (114)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666666666665 36788889999999999999999998888887665
No 88
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=25.99 E-value=1.7e+02 Score=23.09 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=38.7
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.|++-++.+.-.+.|+...+++.+.++.++..++-|..+|-
T Consensus 71 GdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 71 GDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred hhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999987763
No 89
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.86 E-value=2.1e+02 Score=21.43 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 030290 66 VEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (180)
Q Consensus 66 me~~l~~q~~~L~~kipei~~aLe~v~~L~~k 97 (180)
....+.+++..|+.++.++++.++.|..+...
T Consensus 81 ~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 81 MLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567888888888888888888888876643
No 90
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=25.77 E-value=29 Score=25.90 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~a 87 (180)
.|+..|..+...|..|...-..|.+++..|..++.++...
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3444455555555555544555666666666666555443
No 91
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.57 E-value=67 Score=23.67 Aligned_cols=31 Identities=42% Similarity=0.487 Sum_probs=26.6
Q ss_pred eccceeeeeCHHHHHHHHHHHHHHHHHHHHH
Q 030290 130 LGANVMLEYSCDEATVLLQKNLENAKASLEV 160 (180)
Q Consensus 130 LGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~ 160 (180)
||-||+-=-+.+||-+-|.+.+++|++-+++
T Consensus 56 lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 56 LGYGVATFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5778888889999999999999999887764
No 92
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.44 E-value=1.1e+02 Score=20.91 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=23.4
Q ss_pred eeeCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 136 LEYSCDEATVLLQ-----------KNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 136 vEy~ldEA~~lL~-----------~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+|..++||.++|. .....+...+..++.+|..++.++
T Consensus 30 ~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 30 IERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777765 345566666677777777666654
No 93
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=25.35 E-value=2.1e+02 Score=20.65 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 030290 64 KLVEMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (180)
Q Consensus 64 k~me~~l~~q~~~L~~kipei~~aLe~v~~ 93 (180)
......+..++..|..+|.+++.+++.|+.
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 101 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIKTIDR 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456888888888888888888887764
No 94
>PTZ00421 coronin; Provisional
Probab=25.33 E-value=2.3e+02 Score=26.68 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~ 92 (180)
....-+++||++..+.+.+++.+++=++.|+.|-..+-++|+-|+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (493)
T PTZ00421 447 ILDERLGRLQALSEKLRTQHEEIKRCREALQKKESIVMETLEKIQ 491 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455678899999999999999999999999888777766666554
No 95
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.27 E-value=68 Score=18.05 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHhchhhHHHHHHHH
Q 030290 73 QQRDLQAKIPDIEKCLDIV 91 (180)
Q Consensus 73 q~~~L~~kipei~~aLe~v 91 (180)
.+.+++.+|.|+++-|..+
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3567788888888877654
No 96
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.12 E-value=3.3e+02 Score=27.04 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHH
Q 030290 64 KLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEA 143 (180)
Q Consensus 64 k~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA 143 (180)
--+++.+-..+-.|..+|+=|+.+|+.|-.=-+. + +-+-+--++.|
T Consensus 191 ~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~------F----------------------------~~ra~~~fp~a 236 (683)
T PF08580_consen 191 SPQDESLYSSLLALFARMQPLRASLDFLPMRIEE------F----------------------------QSRAESIFPSA 236 (683)
T ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH------H----------------------------HHHHHHhhHHH
Confidence 3456667777888999999999999887653221 1 11114467889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 144 TVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 144 ~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.+.|..+.+.+.+.-+.++.|++-||..+
T Consensus 237 ~e~L~~r~~~L~~k~~~L~~e~~~LK~EL 265 (683)
T PF08580_consen 237 CEELEDRYERLEKKWKKLEKEAESLKKEL 265 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
No 97
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=25.12 E-value=2.8e+02 Score=21.06 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=31.8
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHhchhhHH---HHHHHHHHHH
Q 030290 37 DVQTFLSQLDLDVNSALAFLQERLQQY-KLVEM----KLLAQQRDLQAKIPDIE---KCLDIVATLQ 95 (180)
Q Consensus 37 dV~~~~~~~~~~~e~~l~~lqe~~~kY-k~me~----~l~~q~~~L~~kipei~---~aLe~v~~L~ 95 (180)
|.+.|+..| -++=..+++|..-..+. ++|+. ...+....+..++|.-+ .|...+-.|+
T Consensus 51 d~e~yl~nP-lnaF~LIrRl~~dW~~~~~~~~~~~~~~~~~~~~~~~~~~Pt~~Dl~gA~~~l~RLQ 116 (134)
T PF08336_consen 51 DPEEYLSNP-LNAFSLIRRLHQDWPKWEKLMEQPVGQEQLQNLQELRSKLPTEEDLEGAAEGLLRLQ 116 (134)
T ss_pred chhhhhhcH-HHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 667788665 34444566665554433 23333 24555666677888544 4555554454
No 98
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=25.11 E-value=53 Score=27.62 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 030290 56 LQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (180)
Q Consensus 56 lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe 89 (180)
....--+|++|-+.|..+-.-|..+|.++-+.+.
T Consensus 202 ~d~~k~~yr~M~~kL~e~sevLDdrId~f~~~iq 235 (253)
T PF08418_consen 202 FDPKKYKYRYMFQKLSERSEVLDDRIDEFAELIQ 235 (253)
T ss_dssp ----------S---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334569999999999999999999999988863
No 99
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.04 E-value=2.7e+02 Score=23.72 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
+.+..+..++..++.-..+...|..++..|..||.+++.-++++..-..
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888889999999999999999999999888877554
No 100
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=24.80 E-value=1.4e+02 Score=20.57 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=31.7
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 136 LEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 136 vEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+=|-.-|=.+.|++++..+......++..=..||...+
T Consensus 8 Lm~AVrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 8 LMYAVREEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp GGGT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33556667899999999999999999999999998765
No 101
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.75 E-value=2.1e+02 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 67 EMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 67 e~~l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
-..+.+++..+..+|-+++..+..++.+..
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 81 QQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777788888888887777776654
No 102
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=24.69 E-value=2.6e+02 Score=19.71 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 63 YKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 63 Yk~me~~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
-+..|..+++.+..+..++..+....+.|...+
T Consensus 37 ~~~RE~kyq~~I~~lte~~~~~~~~~~dv~ei~ 69 (71)
T PF10960_consen 37 QEEREEKYQEQIEKLTEKLNVIEEIKEDVKEIK 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336666777777777777777776666666554
No 103
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=24.36 E-value=1.3e+02 Score=29.25 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=46.2
Q ss_pred ccccccHHHHhccCCcCHHHH---HHHHHHHHH--------HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 030290 32 AQFVEDVQTFLSQLDLDVNSA---LAFLQERLQ--------QYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (180)
Q Consensus 32 a~FiedV~~~~~~~~~~~e~~---l~~lqe~~~--------kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k 97 (180)
..|=.+-++|+.-. .-++.+ ++.|.+++. +|+..+.++.+..+.++ +=|.+-+.-.=+++|..|
T Consensus 508 ~dF~~eY~EYreLh-arve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~-~dp~y~eeK~RceYLhsK 582 (604)
T KOG4796|consen 508 KDFEAEYDEYRELH-ARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIR-KDPNYMEEKQRCEYLHSK 582 (604)
T ss_pred HHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhh-cCccHHHHHHHHHHHHHH
Confidence 34666666777543 233444 444444444 89999999999999999 889999988888888876
No 104
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=23.99 E-value=49 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=21.2
Q ss_pred CCCCeEEEEecccee-eeeCHHHHHHHHHH
Q 030290 121 EDTDSVCLWLGANVM-LEYSCDEATVLLQK 149 (180)
Q Consensus 121 ~~td~V~LwLGAnVm-vEy~ldEA~~lL~~ 149 (180)
|...+|||.||+|+- -+..+..|...|..
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~ 34 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAA 34 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHh
Confidence 345689999999983 56667777776654
No 105
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.92 E-value=1.4e+02 Score=21.64 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQFL 168 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~~l 168 (180)
.++..++|..++..++.+++.+...+++|
T Consensus 79 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l 107 (107)
T cd04777 79 QDYYKSFLKNKKDELEKEIEDLKKAIQKL 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56678999999999999998888777653
No 106
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.81 E-value=2e+02 Score=21.51 Aligned_cols=35 Identities=11% Similarity=-0.015 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
+.+...+|..++..++..++.+++-+++|.+-+..
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 78 LEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999998888888888888776543
No 107
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.57 E-value=2.1e+02 Score=21.50 Aligned_cols=35 Identities=6% Similarity=0.039 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.++...+|..++..++..+..+..-.++|.+.+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 76 TSADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999888877654
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=23.54 E-value=7.4e+02 Score=24.66 Aligned_cols=31 Identities=35% Similarity=0.344 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
.++=+..|++++.+-.+..+.++..|..++.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999883
No 109
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=23.47 E-value=47 Score=23.92 Aligned_cols=10 Identities=50% Similarity=0.866 Sum_probs=8.0
Q ss_pred CeEEEEeccc
Q 030290 124 DSVCLWLGAN 133 (180)
Q Consensus 124 d~V~LwLGAn 133 (180)
=+|++|||..
T Consensus 67 l~v~lWlGl~ 76 (76)
T PF08150_consen 67 LRVYLWLGLA 76 (76)
T ss_pred EEEEEEcccC
Confidence 3799999963
No 110
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.16 E-value=2.4e+02 Score=20.86 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.++...+|+.++..++.+++.+..-...|..-+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 76 PCAEVRALLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999998888888876543
No 111
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.13 E-value=3.2e+02 Score=22.29 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
+.+..+..++..+..+......|..++..++.+|-+++.-.+++..-.
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888888888888999999999999999988888776644
No 112
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.86 E-value=1.6e+02 Score=21.52 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=50.4
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHH
Q 030290 70 LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQK 149 (180)
Q Consensus 70 l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~ 149 (180)
...++..++.++..+...|+.|+.=-... . -.+|++.-|++
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~--------------------e-------------------Ls~e~R~~lE~ 43 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRR--------------------E-------------------LSPEARRSLEK 43 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHccc--------------------C-------------------CChHHHHHHHH
Confidence 56788899999999999999888732210 0 23689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 030290 150 NLENAKASLEVLIADLQFLRDQ 171 (180)
Q Consensus 150 ~l~~a~~~l~~~~edL~~lrdQ 171 (180)
.+..+.+.+...++.|..||.+
T Consensus 44 E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 44 ELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHhhccHHHHHHHHHh
Confidence 9999999999999999998853
No 113
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.77 E-value=5.6e+02 Score=23.44 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=23.8
Q ss_pred ceeEEEEcC---cceeEEEEeCCCCeEEEEeccceeeee
Q 030290 103 ALTADFEVS---EGIFSRARIEDTDSVCLWLGANVMLEY 138 (180)
Q Consensus 103 ~~et~f~L~---d~~y~kA~I~~td~V~LwLGAnVmvEy 138 (180)
++-+.+|.. +.+++.+.||+.+--.|-.|..|.+-+
T Consensus 344 ~l~~IvP~~~~~~~l~v~~~V~e~di~~v~~Gq~V~v~~ 382 (457)
T TIGR01000 344 LIAQIYPILEKERKLKVTAYLPSNDISGIKVGQKVRFKL 382 (457)
T ss_pred EEEEEecCCCCCCcEEEEEEeCHHHHhhcCCCCeEEEEE
Confidence 344455553 678999999988766666666665543
No 114
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.65 E-value=3.7e+02 Score=22.84 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 030290 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87 (180)
Q Consensus 49 ~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~a 87 (180)
++..|+..+..|.+-+..-..+..+...++.++.++..-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~ 67 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQAR 67 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666665555666666655554443
No 115
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.61 E-value=1.6e+02 Score=24.93 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290 147 LQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179 (180)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~ 179 (180)
++++|...+..++.++..+..|.+++...-||+
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i 199 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVDYSTITI 199 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEE
Confidence 345566666666666666777777776666665
No 116
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=2.1e+02 Score=20.55 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=30.0
Q ss_pred eeEEEEcCcceeEEEEeCCCCeE-EEEeccc--eeeeeC
Q 030290 104 LTADFEVSEGIFSRARIEDTDSV-CLWLGAN--VMLEYS 139 (180)
Q Consensus 104 ~et~f~L~d~~y~kA~I~~td~V-~LwLGAn--VmvEy~ 139 (180)
-...|.+-+|....|.|+-.-+. .+|+-.| |.||.+
T Consensus 20 ~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 20 GRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELS 58 (75)
T ss_pred CEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEec
Confidence 56778899999999999998877 9999887 666643
No 117
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.52 E-value=2.3e+02 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.++...+|+.++..++..++.+..-...|.+.+
T Consensus 73 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 73 HCREMYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999888777776543
No 118
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.49 E-value=2.3e+02 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.++...+|..++..++++++.++..+.+|..-+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778899999999999999999888888876543
No 119
>PF10400 Vir_act_alpha_C: Virulence activator alpha C-term; InterPro: IPR018309 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response []. This entry represents the C-terminal domain.; PDB: 1YG2_A.
Probab=22.41 E-value=2.6e+02 Score=19.14 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=27.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030290 138 YSCDEATVLLQKNLENAKASLEVLIADLQFLRD 170 (180)
Q Consensus 138 y~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrd 170 (180)
.+.++++.+|+.++......+..+++-.+.+..
T Consensus 17 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 49 (90)
T PF10400_consen 17 LDPEEAIELLEERREQHEERLAEYEEIEQEIFS 49 (90)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 378999999999999999999999987766543
No 120
>PRK02224 chromosome segregation protein; Provisional
Probab=22.35 E-value=7.7e+02 Score=24.39 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 143 ATVLLQKNLENAKASLEVLIADLQFLR 169 (180)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL~~lr 169 (180)
..+-+..++..++..+..+...+..+.
T Consensus 259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~ 285 (880)
T PRK02224 259 EIEDLRETIAETEREREELAEEVRDLR 285 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 121
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.02 E-value=3.2e+02 Score=19.94 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 65 ~me~~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
.....+..++..|..+|.+++..++.|++..
T Consensus 79 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 79 ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999998888754
No 122
>PRK04325 hypothetical protein; Provisional
Probab=21.98 E-value=2.1e+02 Score=20.08 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 142 EATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
+.++-|++-+..-.+.+..+...|..|.+++..++
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555555666666666666554443
No 123
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.90 E-value=6.4e+02 Score=27.53 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEE
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVC 127 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~ 127 (180)
+.+.....+.+.....+...+.|.+++..|..+-|.-..+-+.|+.|...- + +...+..
T Consensus 569 ~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~--g----------------~~~~~~~--- 627 (1486)
T PRK04863 569 SLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS--G----------------EEFEDSQ--- 627 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhc--c----------------hhhcCHH---
Confidence 566667777888888899999999999999999999999999999998752 1 1111111
Q ss_pred EEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 128 LWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 128 LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
.+.++..-+-.+...+.....++...+..|.+||.
T Consensus 628 -----------~v~~~mq~~~~~~~~~~~~~~~~~~~~~~L~~~i~ 662 (1486)
T PRK04863 628 -----------DVTEYMQQLLERERELTVERDELAARKQALDEEIE 662 (1486)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777888888888888888888888875
No 124
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=21.89 E-value=3.1e+02 Score=29.07 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.1
Q ss_pred CcccccccHHHHhccCCcCHHHHHHHH
Q 030290 30 PAAQFVEDVQTFLSQLDLDVNSALAFL 56 (180)
Q Consensus 30 P~a~FiedV~~~~~~~~~~~e~~l~~l 56 (180)
+.-.|||||++|++.. .+++.+|+.+
T Consensus 204 FdfifVDDVDA~Lkas-kNvDriL~Ll 229 (1187)
T COG1110 204 FDFIFVDDVDAILKAS-KNVDRLLRLL 229 (1187)
T ss_pred CCEEEEccHHHHHhcc-ccHHHHHHHc
Confidence 4578999999999875 6888887655
No 125
>PRK00736 hypothetical protein; Provisional
Probab=21.62 E-value=2.3e+02 Score=19.49 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Q 030290 142 EATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (180)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~ 175 (180)
+.++-|++-+..-.+.+..+...+..|.+++...
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555666665555433
No 126
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=21.46 E-value=3.6e+02 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=11.7
Q ss_pred HHHHHHhchhhH-HHHHHHHHHHHhh
Q 030290 73 QQRDLQAKIPDI-EKCLDIVATLQAK 97 (180)
Q Consensus 73 q~~~L~~kipei-~~aLe~v~~L~~k 97 (180)
|..+|+.....| +.-.++|+.|+.+
T Consensus 205 QQ~RLQeSFDtILdnRKELiRclqq~ 230 (239)
T PF15546_consen 205 QQNRLQESFDTILDNRKELIRCLQQR 230 (239)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcc
Confidence 333444333332 2334666777653
No 127
>PRK04406 hypothetical protein; Provisional
Probab=21.26 E-value=2.4e+02 Score=19.93 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 143 ATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 143 A~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
.++-|++-+..-.+.+..+...|..|++++.
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555543
No 128
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.25 E-value=5.9e+02 Score=23.13 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEE
Q 030290 48 DVNSALAFLQERLQQYKLVEMK----------LLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSR 117 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~----------l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~k 117 (180)
+..+.+..+++.+.+.+.--.. ...++..++.++...++-++-++.|.+..+ -..+|++.+|+.
T Consensus 239 ~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~------~~~~la~~l~~~ 312 (406)
T PF02388_consen 239 NGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYG------DEIPLAGALFIY 312 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------SEEEEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CcceEEEEEEEE
Confidence 5555566666655555443333 344677778888888888888887765421 117888888865
Q ss_pred EEeCCCCeEEEEeccc
Q 030290 118 ARIEDTDSVCLWLGAN 133 (180)
Q Consensus 118 A~I~~td~V~LwLGAn 133 (180)
..++++-..|+.
T Consensus 313 ----~g~~~~yly~gs 324 (406)
T PF02388_consen 313 ----YGDEAYYLYGGS 324 (406)
T ss_dssp ----ETTEEEEEEEEE
T ss_pred ----ECCEEEEEECcc
Confidence 335555555554
No 129
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.14 E-value=3.7e+02 Score=22.25 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 030290 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIV 91 (180)
Q Consensus 49 ~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v 91 (180)
.+..+..|+..+...+..-..+..++..|+.+|.+.+.....+
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l 139 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL 139 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666777777766666655533
No 130
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=21.08 E-value=2.5e+02 Score=21.35 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+..+..++|..++..++.++..+..-++.|...+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 76 PCPMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999888888776544
No 131
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.01 E-value=2.3e+02 Score=21.25 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.++...+|..++..+++.+..++.-...|.+.+.
T Consensus 74 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 108 (126)
T cd04783 74 DCSEARELAEQKLAEVDEKIADLQRMRASLQELVS 108 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999988888888776654
No 132
>PRK02793 phi X174 lysis protein; Provisional
Probab=20.99 E-value=2.3e+02 Score=19.76 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 142 EATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 142 EA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
+.++-|++-+..-.+.+..+...+..|.+++..
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444555555555555555443
No 133
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=20.86 E-value=3.7e+02 Score=20.97 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
..+.=++++++++...++..+++..+...-..+...++-+....
T Consensus 39 L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 39 LEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 33344455666666666666666666666666666666555543
No 134
>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis]
Probab=20.66 E-value=1.5e+02 Score=23.50 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=23.8
Q ss_pred ceeEEEEeCCCCeEEEEec------cceeeeeCHHHHHHH
Q 030290 113 GIFSRARIEDTDSVCLWLG------ANVMLEYSCDEATVL 146 (180)
Q Consensus 113 ~~y~kA~I~~td~V~LwLG------AnVmvEy~ldEA~~l 146 (180)
-+|-|+-|.+.|-|+|.|- |+|.+-|+.+||+-|
T Consensus 64 klrkkVwi~~GDIiLv~lRD~qd~kaDvilKY~~dEar~L 103 (145)
T KOG3403|consen 64 KLRKKVWINQGDIILVGLRDYQDDKADVILKYMPDEARIL 103 (145)
T ss_pred cceeeEeecCCCEEEEeeecccccccceehhhChHHHHHH
Confidence 3445555555666666553 789999999999865
No 135
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.58 E-value=1.5e+02 Score=21.15 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 150 NLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 150 ~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
+|..+.+..++++++|..|..||=.
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~ 27 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYD 27 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666667666666633
No 136
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=20.45 E-value=2.7e+02 Score=20.96 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.++...+|..++..+++++..++.-...|..-+.
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 76 ASADVKALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999998888888776553
No 137
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=20.36 E-value=2.8e+02 Score=23.39 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 030290 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (180)
Q Consensus 53 l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aL 88 (180)
....=.+|+||+.+-. +..+...++.+|+.+++-|
T Consensus 64 ydnYYkL~~KY~~LK~-~~~~~~~l~~~i~~le~~l 98 (196)
T PF15272_consen 64 YDNYYKLYSKYQELKK-SSKQSEDLQSRISNLEKQL 98 (196)
T ss_pred HHHHHHHHHHHHHHHH-HhHhhHHHHHHHHHHHHHH
Confidence 3344455788888877 5566677888888888777
No 138
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.35 E-value=2e+02 Score=22.13 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTIT 175 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~ 175 (180)
+.++...+|..++..++..++.+.+-...|.+-+...
T Consensus 75 ~~~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~~ 111 (131)
T cd04786 75 QHDELLAALERKVADIEALEARLAQNKAQLLVLIDLI 111 (131)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999888888877776655443
No 139
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.30 E-value=2.8e+02 Score=20.28 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030290 141 DEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (180)
Q Consensus 141 dEA~~lL~~~l~~a~~~l~~~~edL~~lrdQ 171 (180)
++...+|..+++.++.++..++.-++.|.+-
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDR 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988888877653
No 140
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=20.26 E-value=1.5e+02 Score=21.56 Aligned_cols=25 Identities=12% Similarity=0.012 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 140 CDEATVLLQKNLENAKASLEVLIAD 164 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~ed 164 (180)
.+++.++|..++..++..++.++..
T Consensus 74 ~~~~~~ll~~~~~~l~~~i~~L~~~ 98 (99)
T cd04772 74 VASALALVDAAHALLQRYRQQLDQE 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4588888888888888888877654
No 141
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=20.26 E-value=2.6e+02 Score=21.87 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 140 CDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 140 ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.+++..+|..++..++.+++.++.-...|...+
T Consensus 82 ~~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~~~ 114 (144)
T PRK13752 82 CEEASSLAEHKLKDVREKMADLARMEAVLSELV 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999888888877654
No 142
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.25 E-value=3.2e+02 Score=22.28 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=43.2
Q ss_pred ccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 030290 32 AQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (180)
Q Consensus 32 a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~ 93 (180)
..|.+.+.+|+.=- +.+-.+|+.=......|....+.|..++..|+.++.+.+...+.+..
T Consensus 95 ~~f~e~Lkey~~y~-~svk~~l~~R~~~q~~~e~~~e~L~~k~~~l~~ev~~a~~~~e~~~~ 155 (200)
T cd07624 95 FVFLPPLREYLLYS-DAVKDVLKRRDQFQIEYELSVEELNKKRLELLKEVEKLQDKLECANA 155 (200)
T ss_pred HHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888432 35666666666666777777778888888888887777776665544
No 143
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.03 E-value=2.9e+02 Score=20.97 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.++...+|..++..++.++..+..-.+.|.+-+
T Consensus 78 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 78 SCAEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999988888777776544
No 144
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.02 E-value=9.9e+02 Score=25.76 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~ 92 (180)
..+..+...+..+...+.....+..++..+..++|+++..|+.+.
T Consensus 782 ~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~ 826 (1293)
T KOG0996|consen 782 KLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLT 826 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHH
Confidence 455566666666666666666788888888888888877655443
No 145
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=20.02 E-value=1.9e+02 Score=24.95 Aligned_cols=60 Identities=28% Similarity=0.410 Sum_probs=39.6
Q ss_pred EEEEeCCCCeEEEEeccceeeee-----CHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhccee
Q 030290 116 SRARIEDTDSVCLWLGANVMLEY-----SCDEATVLLQKNLENAKASLEVLIAD--------LQFLRDQVTIT 175 (180)
Q Consensus 116 ~kA~I~~td~V~LwLGAnVmvEy-----~ldEA~~lL~~~l~~a~~~l~~~~ed--------L~~lrdQiTt~ 175 (180)
+.+++|||+-+-|.|..|+.|=| +.+-|--+-+.-...+-+.++.+.+. ++-|||++|..
T Consensus 160 A~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLW 232 (268)
T COG5040 160 ATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLW 232 (268)
T ss_pred hhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceee
Confidence 56789999999999999988765 33444444444445555555544443 57788888753
Done!