Query 030290
Match_columns 180
No_of_seqs 149 out of 288
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 100.0 1.1E-30 3.7E-35 201.1 15.2 120 53-176 3-122 (133)
2 2zdi_C Prefoldin subunit alpha 100.0 1E-29 3.5E-34 200.2 10.5 125 50-179 8-135 (151)
3 2zqm_A Prefoldin beta subunit 98.5 6E-07 2.1E-11 66.3 10.0 99 52-177 7-105 (117)
4 1fxk_A Prefoldin; archaeal pro 98.4 3.1E-06 1.1E-10 61.6 11.3 97 54-177 4-100 (107)
5 1fxk_C Protein (prefoldin); ar 85.1 2.3 8E-05 31.3 6.4 105 51-172 8-125 (133)
6 3mq9_A Bone marrow stromal ant 81.5 26 0.00088 30.4 12.6 97 34-173 357-467 (471)
7 3ci9_A Heat shock factor-bindi 78.2 2.3 7.8E-05 27.1 3.4 34 55-88 14-47 (48)
8 2zdi_C Prefoldin subunit alpha 65.9 13 0.00045 28.0 5.9 57 103-172 79-135 (151)
9 4dnd_A Syntaxin-10, SYN10; str 60.4 19 0.00065 27.0 5.8 45 48-92 35-94 (130)
10 3swf_A CGMP-gated cation chann 53.1 19 0.00066 24.8 4.2 47 37-83 4-50 (74)
11 3swy_A Cyclic nucleotide-gated 50.3 20 0.00069 22.5 3.7 33 48-80 13-45 (46)
12 1fxk_A Prefoldin; archaeal pro 49.3 31 0.0011 23.9 5.1 101 49-173 3-103 (107)
13 3hh0_A Transcriptional regulat 48.1 74 0.0025 23.7 7.3 27 70-96 85-111 (146)
14 2yy0_A C-MYC-binding protein; 47.7 30 0.001 22.0 4.3 39 36-74 5-46 (53)
15 2zqm_A Prefoldin beta subunit 46.1 36 0.0012 23.9 5.1 99 48-173 7-108 (117)
16 1q08_A Zn(II)-responsive regul 45.3 68 0.0023 21.6 6.7 33 65-97 39-71 (99)
17 3gpv_A Transcriptional regulat 45.0 28 0.00097 26.0 4.6 38 139-176 92-129 (148)
18 1ykh_B RNA polymerase II holoe 42.9 65 0.0022 24.0 6.2 53 37-89 72-127 (132)
19 3htk_A Structural maintenance 41.7 43 0.0015 21.0 4.4 27 147-173 24-50 (60)
20 3vmx_A Voltage-gated hydrogen 41.2 66 0.0023 20.3 5.7 40 57-96 3-42 (48)
21 1yke_B RNA polymerase II holoe 40.9 69 0.0024 24.5 6.2 52 37-88 72-126 (151)
22 3l4q_C Phosphatidylinositol 3- 40.6 1E+02 0.0035 24.2 7.3 105 47-171 10-125 (170)
23 2qyw_A Vesicle transport throu 40.5 29 0.00098 24.7 3.7 37 136-172 54-101 (102)
24 3gp4_A Transcriptional regulat 37.2 90 0.0031 23.1 6.3 25 69-93 85-109 (142)
25 2q6q_A Spindle POLE BODY compo 36.8 79 0.0027 21.5 5.2 37 51-87 24-60 (74)
26 3gp4_A Transcriptional regulat 36.5 36 0.0012 25.3 3.9 36 139-174 78-113 (142)
27 2pnv_A Small conductance calci 36.4 51 0.0018 20.3 3.9 26 147-172 14-39 (43)
28 3ghg_A Fibrinogen alpha chain; 36.1 94 0.0032 28.8 7.2 47 133-179 106-154 (562)
29 1q08_A Zn(II)-responsive regul 35.8 71 0.0024 21.5 5.1 35 139-173 36-70 (99)
30 2p90_A Hypothetical protein CG 35.5 75 0.0026 26.9 6.2 66 26-92 189-263 (319)
31 3iyn_Q Protein IX, PIX, hexon- 35.0 55 0.0019 24.9 4.6 35 139-173 95-129 (140)
32 1lrz_A FEMA, factor essential 34.7 2.1E+02 0.0073 24.4 9.2 76 48-133 244-332 (426)
33 1gk4_A Vimentin; intermediate 31.7 29 0.00099 23.8 2.5 41 133-173 10-50 (84)
34 1vcs_A Vesicle transport throu 31.5 42 0.0014 23.8 3.4 38 135-172 42-90 (102)
35 3gpv_A Transcriptional regulat 31.0 67 0.0023 23.9 4.7 32 65-96 95-126 (148)
36 1p68_A De novo designed protei 30.2 23 0.0008 24.9 1.7 30 34-68 40-69 (102)
37 3qf7_D MRE11; ABC-ATPase, ATPa 29.6 40 0.0014 21.1 2.6 38 29-66 4-41 (50)
38 1m1j_B Fibrinogen beta chain; 29.3 1.7E+02 0.0058 26.4 7.7 36 137-172 163-198 (464)
39 3cnr_A Type IV fimbriae assemb 29.0 1.1E+02 0.0037 22.2 5.4 37 106-142 40-91 (117)
40 1x8y_A Lamin A/C; structural p 28.9 48 0.0016 22.9 3.2 41 133-173 12-52 (86)
41 3htk_A Structural maintenance 27.9 1.1E+02 0.0038 19.0 5.2 35 61-95 19-53 (60)
42 1q06_A Transcriptional regulat 27.1 1.2E+02 0.0041 22.0 5.4 34 139-172 76-109 (135)
43 1deq_A Fibrinogen (alpha chain 26.8 3E+02 0.01 24.4 8.6 40 139-178 117-156 (390)
44 2xz3_A Maltose ABC transporter 26.6 2.2E+02 0.0074 24.4 7.8 56 37-93 347-407 (463)
45 3mov_A Lamin-B1; LMNB1, B-type 26.2 56 0.0019 23.1 3.2 43 131-173 19-61 (95)
46 3hsq_A Acyl-[acyl-carrier-prot 26.0 39 0.0013 27.0 2.6 68 27-96 183-250 (259)
47 3ljm_A Coil Ser L9C; de novo d 23.3 96 0.0033 17.4 3.1 23 70-92 6-28 (31)
48 3tnu_B Keratin, type II cytosk 22.6 49 0.0017 24.2 2.5 42 132-173 58-99 (129)
49 3tnu_A Keratin, type I cytoske 22.6 49 0.0017 24.3 2.5 42 132-173 60-101 (131)
50 2v4h_A NF-kappa-B essential mo 22.5 2.3E+02 0.0079 20.7 6.4 28 70-97 43-70 (110)
51 3ra3_A P1C; coiled coil domain 22.4 1.1E+02 0.0037 16.9 3.1 21 65-85 7-27 (28)
52 3f1i_H Hepatocyte growth facto 22.4 2.2E+02 0.0076 20.4 6.4 49 48-96 35-86 (98)
53 1r8e_A Multidrug-efflux transp 21.3 2.4E+02 0.0081 22.1 6.5 30 66-95 80-109 (278)
54 1kcq_A Gelsolin, brevin, ADF, 21.0 44 0.0015 23.3 1.8 13 123-135 37-49 (104)
55 3aei_A Prefoldin beta subunit 20.3 2.3E+02 0.0078 19.8 6.0 31 132-162 51-81 (99)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.97 E-value=1.1e-30 Score=201.10 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEecc
Q 030290 53 LAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGA 132 (180)
Q Consensus 53 l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGA 132 (180)
+++|++++++|+++...+++++..|+.++|++++++++|+.|.. .++.+++||||+++|++|+|+++++||||||+
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~----~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~ 78 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG----KDGSETLVPVGAGSFIKAELKDTSEVIMSVGA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CTTCEEEEEEETTEEEEEECCSTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCC
Confidence 67899999999999999999999999999999999999999975 35799999999999999999999999999999
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
|||||||++||+++|++|++.++.+++.+++++.+++++|++++
T Consensus 79 g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~ 122 (133)
T 1fxk_C 79 GVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS 122 (133)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999864
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.96 E-value=1e-29 Score=200.19 Aligned_cols=125 Identities=19% Similarity=0.228 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeE
Q 030290 50 NSALAFLQERLQQYKLVEMKLLAQQRDL---QAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSV 126 (180)
Q Consensus 50 e~~l~~lqe~~~kYk~me~~l~~q~~~L---~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V 126 (180)
++-++.|.+.+++|+++...+.+++..| +.++||++++++.|+.|.. ++.+++||||+++|++|+|+|+++|
T Consensus 8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~-----~~~~ilvplg~~~yv~g~i~~~~~V 82 (151)
T 2zdi_C 8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEE-----EKPEILVPIGAGSFLKGVIVDKNNA 82 (151)
T ss_dssp TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----SSCEEEEECSSSCEEEEECSCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCceEEEEcCCCeEEEEEECCCCEE
Confidence 4568999999999999999999999999 9999999999999998862 5689999999999999999999999
Q ss_pred EEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290 127 CLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179 (180)
Q Consensus 127 ~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~ 179 (180)
+||||+|||||||++||+++|++|++.++.+++.+++++.+++++++++++++
T Consensus 83 ~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 83 IVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred EEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998875
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=98.54 E-value=6e-07 Score=66.33 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEec
Q 030290 52 ALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLG 131 (180)
Q Consensus 52 ~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLG 131 (180)
-++.+...|++|+..-..+.+++..++..+-+++.+++.|..|.. ..+||.-+|
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~--------------------------d~~vy~~iG 60 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPD--------------------------DAVVYKTVG 60 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT--------------------------TCCEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------------------CcHhHHHhh
Confidence 456666777778888888999999999999999988888777631 224666666
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeee
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EV 177 (180)
+|+|+.+.++|...|+++++.++..++.++..+.+++.++...+.
T Consensus 61 -~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 61 -TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp -TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998865543
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=98.43 E-value=3.1e-06 Score=61.60 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEEEeccc
Q 030290 54 AFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 54 ~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAn 133 (180)
+.....|++++..-..+.+++..++..+-+++.+++-|..|. +..+||--+| +
T Consensus 4 Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~--------------------------~d~~vy~~iG-~ 56 (107)
T 1fxk_A 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA--------------------------DDAEVYKSSG-N 56 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--------------------------TTCCEEEEET-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------CCchHHHHHh-H
Confidence 444455566666666778888899999888888888877763 2234555555 8
Q ss_pred eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeee
Q 030290 134 VMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQV 177 (180)
Q Consensus 134 VmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EV 177 (180)
|+|+.|.++|...|+++++.++..++.++..+.+++.++.-++.
T Consensus 57 vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 57 ILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765543
No 5
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=85.09 E-value=2.3 Score=31.34 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhh-------------cCCCceeEEEEcCcceeEE
Q 030290 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKK-------------EGGEALTADFEVSEGIFSR 117 (180)
Q Consensus 51 ~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~-------------~~~e~~et~f~L~d~~y~k 117 (180)
..++.++...+.+...-..+...+..++.-+..++. +..-.... .-.+.-++.+.||.|+|+.
T Consensus 8 ~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~----l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE 83 (133)
T 1fxk_C 8 AQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD----IQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence 345666666666666666666666655544444433 33111211 0123356999999999999
Q ss_pred EEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 118 ARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 118 A~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
-.++.... -++.=++.|+.+++.+++.+..+++.+.-+.+++
T Consensus 84 ~~~~eA~~-------------~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 84 KNFEDAME-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp EEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98875332 3566677778888888888888887777777665
No 6
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.50 E-value=26 Score=30.45 Aligned_cols=97 Identities=23% Similarity=0.147 Sum_probs=59.5
Q ss_pred ccccHHHHhccCCcCHHHHHHHHHHH----HHHHHHHHH------HHHHHHHHHHhchhhHHHHHHHHHH----HHhhhc
Q 030290 34 FVEDVQTFLSQLDLDVNSALAFLQER----LQQYKLVEM------KLLAQQRDLQAKIPDIEKCLDIVAT----LQAKKE 99 (180)
Q Consensus 34 FiedV~~~~~~~~~~~e~~l~~lqe~----~~kYk~me~------~l~~q~~~L~~kipei~~aLe~v~~----L~~k~~ 99 (180)
+-+-+..++... .+++++++.++.. +.+++...+ .|++++.+++...+++++--.++.+ |+..
T Consensus 357 ~~~~~~~vl~G~-~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 433 (471)
T 3mq9_A 357 VRTAVINAASGR-QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMAS-- 433 (471)
T ss_dssp HHHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHH--
Confidence 334455555443 5888888766655 455554433 5777777777777777765554443 3221
Q ss_pred CCCceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 100 GGEALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 100 ~~e~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+|..... -.+|+++++..+.++++.|..++.||.
T Consensus 434 ------------------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 434 ------------------------------------LDAEKAQ----GQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp ------------------------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 225888888888888888888888764
No 7
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=78.18 E-value=2.3 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.512 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 030290 55 FLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (180)
Q Consensus 55 ~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aL 88 (180)
.|+++..||+.|...+..++..+-.+|-++++++
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 5666778899999999999999999999998876
No 8
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=65.93 E-value=13 Score=27.95 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=37.8
Q ss_pred ceeEEEEcCcceeEEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 103 ALTADFEVSEGIFSRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 103 ~~et~f~L~d~~y~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.-++.++||.|+|++-.++.... -++.=+++|+.+++.+++.+..+++.+..+...|
T Consensus 79 ~~~V~v~lG~g~~vE~~~~eA~~-------------~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 79 KNNAIVSVGSGYAVERSIDEAIS-------------FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp TTEEEEEEETTEEEEEEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCEEEEEeCCCeEEEecHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688889999998888765322 3455566666666666666666666666655543
No 9
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=60.38 E-value=19 Score=26.98 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhchhhHHHHHHHHH
Q 030290 48 DVNSALAFLQERLQQYKLV---------------EMKLLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~m---------------e~~l~~q~~~L~~kipei~~aLe~v~ 92 (180)
++...+..++.+|+.|..+ -..|...++.++..+.|+++++.+|+
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999998643 22567788888888889999888886
No 10
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=53.06 E-value=19 Score=24.82 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=30.8
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 030290 37 DVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPD 83 (180)
Q Consensus 37 dV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipe 83 (180)
|+++-+.+-+++++..=.+|.-++..|......|.|++..|+.++..
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555543223455444567777788888888888888888776654
No 11
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=50.33 E-value=20 Score=22.48 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030290 48 DVNSALAFLQERLQQYKLVEMKLLAQQRDLQAK 80 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~k 80 (180)
+++..=.+|.-++..|......|.|++..|+.+
T Consensus 13 ~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 13 SLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444566677778888888888888877654
No 12
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=49.30 E-value=31 Score=23.89 Aligned_cols=101 Identities=16% Similarity=0.076 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCCeEEE
Q 030290 49 VNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTDSVCL 128 (180)
Q Consensus 49 ~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td~V~L 128 (180)
++..+..|+.+.++++.....+.+-.. -....-...+.|+.+..=.. +++.+| ++|++-.+.+.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~-~~~e~~~~~~EL~~l~~d~~---------vy~~iG-~vfv~~~~~e~----- 66 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEM-QINETQKALEELSRAADDAE---------VYKSSG-NILIRVAKDEL----- 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCTTCC---------EEEEET-TEEEEECHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCch---------HHHHHh-HHHHhccHHHH-----
Confidence 566777777777777777775543322 22333444555555543231 445555 56777665432
Q ss_pred EeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 129 WLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 129 wLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
.-.+++-.+.|+..++.++++++.++..+..++.++.
T Consensus 67 --------~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 67 --------TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2368999999999999999999999999999988763
No 13
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=48.06 E-value=74 Score=23.68 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=15.1
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 70 LLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 70 l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
|.+++..|..+|.+++..++.|+.+..
T Consensus 85 L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 85 MHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666665555443
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.75 E-value=30 Score=22.03 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=17.9
Q ss_pred ccHHHHhc--cCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 36 EDVQTFLS--QLD-LDVNSALAFLQERLQQYKLVEMKLLAQQ 74 (180)
Q Consensus 36 edV~~~~~--~~~-~~~e~~l~~lqe~~~kYk~me~~l~~q~ 74 (180)
+-|..|++ .|. .+++...+..+++-+||..+...+..-.
T Consensus 5 efIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 5 DFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566776 544 4777766677776666665555444333
No 15
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.12 E-value=36 Score=23.87 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcceeEEEEeCCCC
Q 030290 48 DVNSALAFLQERLQQYKLVEMKL---LAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGIFSRARIEDTD 124 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l---~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~y~kA~I~~td 124 (180)
..+..+..|+.+.++++.+...+ ..++..+ -...+.|+.+..=.. +++.+| ++|++-.+++.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~----~~~~~eL~~l~~d~~---------vy~~iG-~vfv~~~~~ea- 71 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEA----KKALDEIESLPDDAV---------VYKTVG-TLIVKTTKDKA- 71 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSCTTCC---------EEEEET-TEEEEECHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCcH---------hHHHhh-HHHhhccHHHH-
Confidence 35566667777776666666644 4444444 344444555543222 445666 56666655432
Q ss_pred eEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 125 SVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 125 ~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
.-.+++-++.|+..++.+++++..+...+..++.++.
T Consensus 72 ------------~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 72 ------------VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2368899999999999999999999999999888753
No 16
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=45.34 E-value=68 Score=21.61 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 030290 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (180)
Q Consensus 65 ~me~~l~~q~~~L~~kipei~~aLe~v~~L~~k 97 (180)
.+...+.+++..+..+|.+++..++.|+.+...
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888889999999999999988887654
No 17
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=44.96 E-value=28 Score=26.00 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceee
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQ 176 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~E 176 (180)
++++..++|..++..+++.+..++.-++.|...|...+
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999999999988888888888887765443
No 18
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.89 E-value=65 Score=23.99 Aligned_cols=53 Identities=6% Similarity=0.156 Sum_probs=33.8
Q ss_pred cHHHHhcc-CC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 030290 37 DVQTFLSQ-LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLD 89 (180)
Q Consensus 37 dV~~~~~~-~~--~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe 89 (180)
+|+..+.. || .+.+..+++++++..+.+..+..+.+.++.-+.-+..++.+|.
T Consensus 72 qIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 72 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544433 55 4777788888888888888877776666655555555444443
No 19
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.74 E-value=43 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 147 LQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+..++..+..++..+.++|..+++.|+
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~ 50 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVI 50 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555544
No 20
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=41.18 E-value=66 Score=20.33 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 57 QERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 57 qe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
+..+.|||.+-..|.++...|+..-.+.+.-++-++.|-.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999988888887654
No 21
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.92 E-value=69 Score=24.51 Aligned_cols=52 Identities=6% Similarity=0.140 Sum_probs=30.5
Q ss_pred cHHHHhcc-CC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 030290 37 DVQTFLSQ-LD--LDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCL 88 (180)
Q Consensus 37 dV~~~~~~-~~--~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aL 88 (180)
+|+..+.. || .+.+..+++++++..+.+..+..+.+.++.-+.-+..++.+|
T Consensus 72 qIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 72 QINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433 55 467777777777777777777766655555444444444433
No 22
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=40.64 E-value=1e+02 Score=24.17 Aligned_cols=105 Identities=15% Similarity=0.126 Sum_probs=62.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhchhhHHHHHHHHHHHHhhhcC----CCceeEEEEcCccee
Q 030290 47 LDVNSALAFLQERLQQYKLVEM-------KLLAQQRDLQAKIPDIEKCLDIVATLQAKKEG----GEALTADFEVSEGIF 115 (180)
Q Consensus 47 ~~~e~~l~~lqe~~~kYk~me~-------~l~~q~~~L~~kipei~~aLe~v~~L~~k~~~----~e~~et~f~L~d~~y 115 (180)
.+++.+.++|+++|++|+-.-. .+.+....++.|..-|+.--++++..++.-.. +.++.-.| =
T Consensus 10 ~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f------~ 83 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERF------R 83 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSS------S
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------H
Confidence 4899999999999988876544 33333344444545555555555555543000 00000000 0
Q ss_pred EEEEeCCCCeEEEEeccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030290 116 SRARIEDTDSVCLWLGANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQ 171 (180)
Q Consensus 116 ~kA~I~~td~V~LwLGAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQ 171 (180)
..| .| --++ .+.+.-++|..++..+..+...+.++|.-....
T Consensus 84 ~e~--~~-----------~E~~-~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~ 125 (170)
T 3l4q_C 84 REG--NE-----------KEMQ-RILLNSERLKSRIAEIHESRTKLEQELRAQASD 125 (170)
T ss_dssp SCC--CS-----------SSTT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc--CH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 11 1111 478899999999999999999999998865543
No 23
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=40.48 E-value=29 Score=24.73 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=30.0
Q ss_pred eeeCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhc
Q 030290 136 LEYSCDEATVLLQK-----------NLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 136 vEy~ldEA~~lL~~-----------~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+|..++||.++|.. ....+...+..++.||+.|+.++
T Consensus 54 ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 54 FDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56789999999987 35677788889999998888654
No 24
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.25 E-value=90 Score=23.05 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHH
Q 030290 69 KLLAQQRDLQAKIPDIEKCLDIVAT 93 (180)
Q Consensus 69 ~l~~q~~~L~~kipei~~aLe~v~~ 93 (180)
.+.+++..|..+|-+++..++.|+.
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 25
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=36.85 E-value=79 Score=21.53 Aligned_cols=37 Identities=35% Similarity=0.431 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q 030290 51 SALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKC 87 (180)
Q Consensus 51 ~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~a 87 (180)
-++..|+..+-||-.|-..|+.+...++.++.++.+-
T Consensus 24 vlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 24 KIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 3567888999999999999999999999998887654
No 26
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.50 E-value=36 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcce
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTI 174 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt 174 (180)
++++..++|..++..+...+..++.-++.|...|..
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~ 113 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDN 113 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888888888888777777766543
No 27
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.35 E-value=51 Score=20.27 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 147 LQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 147 L~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
|+.|-..+++++..++..|+-|++++
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666655554
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.07 E-value=94 Score=28.83 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred ceeeeeC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeec
Q 030290 133 NVMLEYS--CDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVVC 179 (180)
Q Consensus 133 nVmvEy~--ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn~ 179 (180)
|++=||+ |..=+..|+.++.+--.++..|+..|+.++-.|--+||-|
T Consensus 106 NtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666 6777777888777777778888888888877777777643
No 29
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=35.79 E-value=71 Score=21.49 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+.++...+|..++..++..+..++.-+..|..-+.
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999888888876554
No 30
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=35.52 E-value=75 Score=26.92 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=45.9
Q ss_pred CCCCCcccccccHHHHhccCCcCHHHHH---HHHHHHH------HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 030290 26 RRGIPAAQFVEDVQTFLSQLDLDVNSAL---AFLQERL------QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 26 ~~gIP~a~FiedV~~~~~~~~~~~e~~l---~~lqe~~------~kYk~me~~l~~q~~~L~~kipei~~aLe~v~ 92 (180)
.+|||.+-|.-.|--|+... .++..++ +.+...+ .......+.+.+++..+..+-+++.+-+..++
T Consensus 189 ~~Gi~a~~l~~~vphYl~~~-pdP~AA~~lL~~l~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE 263 (319)
T 2p90_A 189 DKGKNVSGYTVHVPHYVSAS-PYPAATLKLLQSIADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALE 263 (319)
T ss_dssp HTTCCEEEEEEEEEGGGTTS-CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HCCCCEEEEEEecCcccCCC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 38999999999999999764 3555544 4444442 45666677888888888887777775444433
No 31
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=35.01 E-value=55 Score=24.87 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
--+|+...+-.+++.+..+++.+...+..|++|..
T Consensus 95 ~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 95 ARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888999999999999999999999998864
No 32
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=34.71 E-value=2.1e+02 Score=24.42 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhchhhHHHHHHHHHHHHhhhcCCCceeEEEEcCcce
Q 030290 48 DVNSALAFLQERLQQYKLVEMKL-------------LAQQRDLQAKIPDIEKCLDIVATLQAKKEGGEALTADFEVSEGI 114 (180)
Q Consensus 48 ~~e~~l~~lqe~~~kYk~me~~l-------------~~q~~~L~~kipei~~aLe~v~~L~~k~~~~e~~et~f~L~d~~ 114 (180)
++++.+..+++.+.+.......+ ..|+..+++++...++-+.-++.|.+.. ++ ..+|++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~----~~~lAgal 317 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEH--GN----ELPISAGF 317 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CS----EEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC----cceeEEEE
Confidence 56666777777666666655555 4456666667777777776666665431 11 25788888
Q ss_pred eEEEEeCCCCeEEEEeccc
Q 030290 115 FSRARIEDTDSVCLWLGAN 133 (180)
Q Consensus 115 y~kA~I~~td~V~LwLGAn 133 (180)
|+. ..++++-|.|+.
T Consensus 318 ~~~----~~~~~~y~y~gs 332 (426)
T 1lrz_A 318 FFI----NPFEVVYYAGGT 332 (426)
T ss_dssp EEE----CSSCEEEEEEEE
T ss_pred EEE----ECCEEEEEecCc
Confidence 876 456777776654
No 33
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.70 E-value=29 Score=23.83 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=32.7
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+..+|-.+.|+..-....+..+...+..++..|..+|..|.
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~ 50 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMA 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888888888888888888887663
No 34
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.52 E-value=42 Score=23.77 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=27.1
Q ss_pred eeeeCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhc
Q 030290 135 MLEYSCDEATVLLQK-----------NLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 135 mvEy~ldEA~~lL~~-----------~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.+|..++||.++|.. -...+...+..++.||+.|+.++
T Consensus 42 ~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 42 NVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999987 24556667777777777766654
No 35
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=31.00 E-value=67 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 65 LVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 65 ~me~~l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
.....+.+++..|..+|.++++.++.|+....
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777776554
No 36
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=30.24 E-value=23 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=17.7
Q ss_pred ccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHH
Q 030290 34 FVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEM 68 (180)
Q Consensus 34 FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~ 68 (180)
.|+||-+||...|+. .+||++...|++.-.
T Consensus 40 viedihdfmqgggsg-----gklqemmkefqqvld 69 (102)
T 1p68_A 40 VIEDIHDFMQGGGSG-----GKLQEMMKEFQQVLD 69 (102)
T ss_dssp HHHHHHTTTTTSSTT-----THHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcc-----hHHHHHHHHHHHHHH
Confidence 589999999765421 145555555544433
No 37
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=29.58 E-value=40 Score=21.06 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHH
Q 030290 29 IPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLV 66 (180)
Q Consensus 29 IP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~m 66 (180)
|.+-.|.+=..+|++++..+-+..|+-|.+++..-|.-
T Consensus 4 ~~kld~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp ---CCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 55667888889999887678999999999988776543
No 38
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.29 E-value=1.7e+02 Score=26.41 Aligned_cols=36 Identities=8% Similarity=0.129 Sum_probs=28.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 137 EYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 137 Ey~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
.-.++..+..|+..+..+...+..++..+..+.+..
T Consensus 163 ~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 163 DNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335677888888888888888888888887776654
No 39
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=28.99 E-value=1.1e+02 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.440 Sum_probs=27.3
Q ss_pred EEEEcCcceeEEEEeCCCC------eEEEEe---c------cceeeeeCHHH
Q 030290 106 ADFEVSEGIFSRARIEDTD------SVCLWL---G------ANVMLEYSCDE 142 (180)
Q Consensus 106 t~f~L~d~~y~kA~I~~td------~V~LwL---G------AnVmvEy~ldE 142 (180)
-.|++|+.+|+.-.+|+.. -.++|+ | +|+-|+|.-++
T Consensus 40 ~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~~~~~~p~G~GVqF~~~~ 91 (117)
T 3cnr_A 40 KRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAGIGVQFPDGP 91 (117)
T ss_dssp SCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCEEEEECCSSH
T ss_pred CccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCCCCCCCCCceEEEEecCc
Confidence 3477888889888888753 346798 3 68999998654
No 40
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.90 E-value=48 Score=22.86 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=33.9
Q ss_pred ceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 133 NVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 133 nVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
+..+|-++.|+..-....++.+...+..++..|..+|..|.
T Consensus 12 ~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 12 LAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888899999999999999988887764
No 41
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.92 E-value=1.1e+02 Score=18.97 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 61 QQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 61 ~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
.+|......+......+..-..++....+-|..++
T Consensus 19 ~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 19 EKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555555554443
No 42
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=27.07 E-value=1.2e+02 Score=22.05 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQV 172 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQi 172 (180)
+.++...+|..++..++..+..++.-+..|..-+
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999988888888877654
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.80 E-value=3e+02 Score=24.40 Aligned_cols=40 Identities=8% Similarity=0.068 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeee
Q 030290 139 SCDEATVLLQKNLENAKASLEVLIADLQFLRDQVTITQVV 178 (180)
Q Consensus 139 ~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiTt~EVn 178 (180)
.|+.=+.+|+.++..--.++..|+.+|+.++-.|--+||-
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788777766668888888888888777776653
No 44
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=26.65 E-value=2.2e+02 Score=24.38 Aligned_cols=56 Identities=25% Similarity=0.105 Sum_probs=38.1
Q ss_pred cHHHHhccCCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 030290 37 DVQTFLSQLDLDVNSALAFLQERLQ-----QYKLVEMKLLAQQRDLQAKIPDIEKCLDIVAT 93 (180)
Q Consensus 37 dV~~~~~~~~~~~e~~l~~lqe~~~-----kYk~me~~l~~q~~~L~~kipei~~aLe~v~~ 93 (180)
-+..++... .+++++++.+++.++ ..+.+-..+...++.+...|-.+++.+..|..
T Consensus 347 ~l~~~~~G~-~t~eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 407 (463)
T 2xz3_A 347 AVINAASGR-QTVDAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVAS 407 (463)
T ss_dssp HHHHHHTTS-SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555433 589999999888753 44555567777777777777777777766654
No 45
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.25 E-value=56 Score=23.10 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=35.9
Q ss_pred ccceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 131 GANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 131 GAnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
|-+..+|-.+.|...-+...+..+...+..++..|..+|..|.
T Consensus 19 ~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 19 KESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788889999999999999999999999999988887653
No 46
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=26.00 E-value=39 Score=26.95 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=43.1
Q ss_pred CCCCcccccccHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 27 RGIPAAQFVEDVQTFLSQLDLDVNSALAFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 27 ~gIP~a~FiedV~~~~~~~~~~~e~~l~~lqe~~~kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
.|.|.-..--++ .-+...+-+ ++.++.++..|..|-.....+.+.++.|+.++|+....-.+++++..
T Consensus 183 ~G~pa~~~~~~~-~g~~r~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 250 (259)
T 3hsq_A 183 DGNPSTVVGLNS-VGMKRAGFS-PEVRNAIKHAYKVIYHSGISTRKALDELEASGNLIEQVKYIIKFFRD 250 (259)
T ss_dssp ETTTTEEEEECH-HHHHHTTCC-HHHHHHHHHHHHHHHSSSSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred eccCcEEEeecc-cceeeCCCC-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 366643332333 234444223 34566777777776555557889999999998887777778888864
No 47
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.35 E-value=96 Score=17.44 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=12.0
Q ss_pred HHHHHHHHHhchhhHHHHHHHHH
Q 030290 70 LLAQQRDLQAKIPDIEKCLDIVA 92 (180)
Q Consensus 70 l~~q~~~L~~kipei~~aLe~v~ 92 (180)
+..+-..|++++.-+++-|++++
T Consensus 6 lekkcaalesklqalekkleale 28 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.63 E-value=49 Score=24.22 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=34.0
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
-+-.+|-++.|+..-....+..+...+..++..|..+|..|.
T Consensus 58 ~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 58 QCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 366788888999888888888888888888888888887653
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.59 E-value=49 Score=24.32 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=34.7
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLIADLQFLRDQVT 173 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~edL~~lrdQiT 173 (180)
-+-.+|-++.|+..-....+..+...+..++..|..+|..|.
T Consensus 60 ~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 60 MKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899999998888888888888888888888887653
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.54 E-value=2.3e+02 Score=20.74 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHhh
Q 030290 70 LLAQQRDLQAKIPDIEKCLDIVATLQAK 97 (180)
Q Consensus 70 l~~q~~~L~~kipei~~aLe~v~~L~~k 97 (180)
.+.....|+..|...++.++.|..|+..
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQ 70 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQ 70 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777888888999999999876
No 51
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.38 E-value=1.1e+02 Score=16.88 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhchhhHH
Q 030290 65 LVEMKLLAQQRDLQAKIPDIE 85 (180)
Q Consensus 65 ~me~~l~~q~~~L~~kipei~ 85 (180)
|--..+.|++..|++||..++
T Consensus 7 fendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 7 FENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhc
Confidence 444567788888888877654
No 52
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.37 E-value=2.2e+02 Score=20.44 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHh
Q 030290 48 DVNSALAFLQERLQ---QYKLVEMKLLAQQRDLQAKIPDIEKCLDIVATLQA 96 (180)
Q Consensus 48 ~~e~~l~~lqe~~~---kYk~me~~l~~q~~~L~~kipei~~aLe~v~~L~~ 96 (180)
+|...+..+-.+|. +|....+......+.|+.|+..|+.+-.+++.|-.
T Consensus 35 sVQsLF~~lt~MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~ALdaLR~ 86 (98)
T 3f1i_H 35 AVLSLFQSINGMHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALRE 86 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666654 44444456677788999999999999888888864
No 53
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.25 E-value=2.4e+02 Score=22.14 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 030290 66 VEMKLLAQQRDLQAKIPDIEKCLDIVATLQ 95 (180)
Q Consensus 66 me~~l~~q~~~L~~kipei~~aLe~v~~L~ 95 (180)
....|.+++..|+.+|.+++..++.|+.+.
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 80 LFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666665543
No 54
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=20.99 E-value=44 Score=23.28 Aligned_cols=13 Identities=23% Similarity=0.596 Sum_probs=10.9
Q ss_pred CCeEEEEecccee
Q 030290 123 TDSVCLWLGANVM 135 (180)
Q Consensus 123 td~V~LwLGAnVm 135 (180)
..+||+|.|.+.-
T Consensus 37 g~~iyvW~G~~s~ 49 (104)
T 1kcq_A 37 GNNIHQWCGSNSN 49 (104)
T ss_dssp SSEEEEEECTTCC
T ss_pred CCEEEEEeCCCCC
Confidence 4699999999873
No 55
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=20.34 E-value=2.3e+02 Score=19.83 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=21.7
Q ss_pred cceeeeeCHHHHHHHHHHHHHHHHHHHHHHH
Q 030290 132 ANVMLEYSCDEATVLLQKNLENAKASLEVLI 162 (180)
Q Consensus 132 AnVmvEy~ldEA~~lL~~~l~~a~~~l~~~~ 162 (180)
++..||-+-|||++.++.-.-..+..++.+.
T Consensus 51 ~dllveitkdeaiehier~rl~ykreie~l~ 81 (99)
T 3aei_A 51 SDLLVEITKDEAIEHIERSRLVYKREIEKLK 81 (99)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998765444444443333
Done!