BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030291
(180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
Y+ GDMF IP +DA D+DCL++LKKC+EA+ ++G+RG
Sbjct: 234 TYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
++T+ KLL D+ M + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 110/180 (61%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L +KDC +F+GL S+VDVGGG G +II E FP + C V D P V ++ ++NL
Sbjct: 179 MINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNL 238
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
Y+ GDMF +P +DA D+DC+K+LKKC+EA+ S+G+RG
Sbjct: 239 TYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINE 298
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
+LT+ KLL ++ ++ V GKER E+EW LF+ AGF YKI+P G+ SLIE+YP
Sbjct: 299 KKDENQLTQIKLLMNVTISC-VNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP 357
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 111/180 (61%), Gaps = 1/180 (0%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
+ L ++DC +F GL S+VDVGGGTG A+II E FP +KC V D P V ++ ++NL
Sbjct: 174 LINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNL 233
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
Y+ GD F IP +DA D+DCL++LKKC+EA+ ++G+RG
Sbjct: 234 TYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDK 293
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
++T+ KLL D+ + GKER E+EW LF+ AGF HYKI+P+ G SLIE+YP
Sbjct: 294 KKDENQVTQIKLLXDVNXAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 108/180 (60%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L++++ + +F+GL S+VDVGGGTG ++I E FP +KCTV D P V ++ +NL
Sbjct: 175 MFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 234
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
++ GDMF+ IP +DA +DE LK+LK +EAI+ G+ G
Sbjct: 235 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 294
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
R LTE +L +D+ M GKERT+QEW L +AGF+ YKI PI G KSLIEVYP
Sbjct: 295 TSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 354
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 108/180 (60%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L++++ + +F+GL S+VDVGGGTG ++I E FP +KCTV D P V ++ +NL
Sbjct: 178 MFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 237
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
++ GDMF+ IP +DA +DE LK+LK +EAI+ G+ G
Sbjct: 238 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 297
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
R LTE +L +D+ M GKERT+QEW L +AGF+ YKI PI G KSLIEVYP
Sbjct: 298 TSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 357
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 108/180 (60%)
Query: 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNL 60
M L++++ + +F+GL S+VDVGGGTG ++I E FP +KCTV D P V ++ +NL
Sbjct: 179 MFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 238
Query: 61 KYIEGDMFQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXX 120
++ GDMF+ IP +DA +DE LK+LK +EAI+ G+ G
Sbjct: 239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298
Query: 121 XXXXRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180
R LTE +L +D+ M GKERT+QEW L +AGF+ YKI PI G KSLIEVYP
Sbjct: 299 TSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP 72
F+GL+S+VDVGGGTGA I +P IK DLPH + D P ++++ GDMF IP
Sbjct: 198 FEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIP 257
Query: 73 PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKL 132
+DA DE CLK LK C EA+ NG+ T+ +
Sbjct: 258 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGK---VIVAECILPVAPDSSLATKGVV 314
Query: 133 LFDIFM-NFNVGGKERTEQEWGSLFVNAGFTHYKI 166
D+ M N GGKERT++E+ L AGF +K+
Sbjct: 315 HIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKV 349
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP 72
F+GL ++VDVGGGTGA A +I +P I DLPH + D P ++++ GDMF +P
Sbjct: 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP 260
Query: 73 PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKL 132
DA DE CLKLLK C A+ + G T+ +
Sbjct: 261 KGDAIFIKWICHDWSDEHCLKLLKNCYAALP---DHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 133 LFDIFM-NFNVGGKERTEQEWGSLFVNAGFTHYKIA 167
D M +N GGKERTE+E+ +L + +GF +K+A
Sbjct: 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVA 353
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP 72
F+GL ++VDVGGG GA I+ +P IK DLPH +++ PQ + ++ GDMF+ +P
Sbjct: 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVP 258
Query: 73 PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKL 132
D D+ C LLK C +A+ ++G+ S+
Sbjct: 259 SGDTILMKWILHDWSDQHCATLLKNCYDALPAHGK-----VVLVQCILPVNPEANPSSQG 313
Query: 133 LFD---IFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIE 177
+F I + N GG+ER E+E+ +L AGFT K I+ IE
Sbjct: 314 VFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIE 361
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 7/157 (4%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP 72
F+G+ ++VDVGGG+G +I +P IK DLP + + P ++++ GDMF +P
Sbjct: 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP 266
Query: 73 PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKL 132
DA DE C++ L C +A++ NG+ ESKL
Sbjct: 267 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK-----VIIVEFILPEEPNTSEESKL 321
Query: 133 L--FDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167
+ D M VGG+ERTE+++ L +GF+ +++A
Sbjct: 322 VSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 358
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 7/157 (4%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP 72
F+G+ ++VDVGGG+G +I +P IK DLP + + P ++++ GD F +P
Sbjct: 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVP 266
Query: 73 PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKL 132
DA DE C++ L C +A++ NG+ ESKL
Sbjct: 267 QGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGK-----VIIVEFILPEEPNTSEESKL 321
Query: 133 L--FDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167
+ D VGG+ERTE+++ L +GF+ +++A
Sbjct: 322 VSTLDNLXFITVGGRERTEKQYEKLSKLSGFSKFQVA 358
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHA-------VTDMPQTDNLKYIEG 65
F+G RS VDVGGG+G + I +A P + +LD + ++ + + + + G
Sbjct: 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224
Query: 66 DMFQFIPPS-DAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXX 124
DM Q +P + D D+ L+LL CREA+A +G
Sbjct: 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGR-------VVVIERTISA 277
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169
E + +L+D+ + G+ RT +E L GF +I +
Sbjct: 278 SEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDL 322
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVT----DMPQ-TDNLKYIEGDM 67
F ++ DVGGG G F + PG++ +LD V D P K +EGD
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241
Query: 68 FQFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNG 106
+ +P +D DED +++L CR ++G
Sbjct: 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHG 280
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEG 65
F G + VD+GGG G+ + +AFPG++ T+L+ P + + D + + G
Sbjct: 200 FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 66 DMFQFIPP-SDAXXXXXXXXXXDDEDCLKLLKKCREA 101
D F+ IP +D DD+D +++L++ A
Sbjct: 260 DFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATA 296
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 13/165 (7%)
Query: 19 MVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ------TDNLKYIEGDMFQF-I 71
M D+GGG GA A+ +PG K TV D+P V Q + + + EGD F+ +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 72 PPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESK 131
P +D D C LL++ G R
Sbjct: 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGG------GILVIESLLDEDRRGPLLT 296
Query: 132 LLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLI 176
L+ + M G+ERT + L +AGF ++ I I
Sbjct: 297 QLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAI 341
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 14/157 (8%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAV-------TDMPQTDNLKYIEG 65
+ +R ++DVGGG G FA I+ P + TVL++ V D +D + +EG
Sbjct: 181 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240
Query: 66 DMFQFIP-PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXX 124
D F+ +P +DA D D +++L +C EA+ G
Sbjct: 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR------ILIHERDDLHE 294
Query: 125 RELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161
E D+ M +GG RT ++W L +AG
Sbjct: 295 NSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL 331
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-------HAVTDMPQTDNLKYIEG 65
+ +R ++DVGGG G I+ P ++ T+++L D D + EG
Sbjct: 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239
Query: 66 DMFQFIP-PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGE 107
D F+ +P +D DED L +L+ C A+ G
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGR 282
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQT------ 57
LL+++ + G++ M+DVGGG G + + + FP + T+L+LP A+ + +
Sbjct: 181 LLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 238
Query: 58 -DNLKYIEGDMF-QFIPPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNG 106
D ++ I D++ + P +DA +++ + KK +A+ S G
Sbjct: 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGG 289
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 19 MVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTD-----NLKYIEGDM--FQFI 71
++D+G GTG + + E +P T++D+ + ++ + +KYIE D + F
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE 107
Query: 72 PPSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNG 106
D +DED +L K+ + +G
Sbjct: 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESG 142
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 19 MVDVGGGTGAFARIISEAFPGIKCTVLDL 47
++DVG G+G A I+ A PG+ T +DL
Sbjct: 34 VIDVGTGSGCIAVSIALACPGVSVTAVDL 62
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-------HAVTDMPQTDNLKYIEG 65
+ +R ++DVGGG G I+ P ++ T+++L D D + EG
Sbjct: 180 WSAVRHVLDVGGGNGGXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239
Query: 66 DMFQFIP-PSDAXXXXXXXXXXDDEDCLKLLKKCREAIASNGE 107
D F+ +P +D DED L +L+ C A+ G
Sbjct: 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGR 282
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDM 54
+ ++D+GG TG +A + ++ T++DLP + M
Sbjct: 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMM 218
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 11 PIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEG 65
P F+G R ++D+G G G F + E GI+ +D+ D +K+ EG
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDI--------NEDMIKFCEG 81
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMP----QT 57
A +++ C L + V GG AR + E PG + +D ++ P QT
Sbjct: 194 ADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQT 253
Query: 58 DNLKY-IEGDMFQFIP 72
+ Y +EG + FIP
Sbjct: 254 EQTTYEVEGIGYDFIP 269
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMP----QT 57
A +++ C L + V GG AR + E PG + +D ++ P QT
Sbjct: 259 ADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQT 318
Query: 58 DNLKY-IEGDMFQFIP 72
+ Y +EG + FIP
Sbjct: 319 EQTTYEVEGIGYDFIP 334
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna And Sah
Length = 249
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI 71
++V+VGGGTG +++ + P K V++L D +NLK I + + I
Sbjct: 34 TVVEVGGGTGNLTKVLLQ-HPLKKLYVIEL-----DREMVENLKSIGDERLEVI 81
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI 71
++V+VGGGTG +++ + P K V++L D +NLK I + + I
Sbjct: 33 TVVEVGGGTGNLTKVLLQ-HPLKKLYVIEL-----DREMVENLKSIGDERLEVI 80
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 48/142 (33%), Gaps = 18/142 (12%)
Query: 36 AFPGIKCTVLDLPHAVT-------DMPQTDNLKYIEGDMFQFIPP-SDAXXXXXXXXXXD 87
A + TVLDL + D + + + G F +P + D
Sbjct: 190 AHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWD 249
Query: 88 DEDCLKLLKKCREAIASNGERGXXXXXXXXXXXXXXXRELTESKLLFDIFMNFNVGGKER 147
D + +L++C EA S G E + + D+ M GGKER
Sbjct: 250 DLSAVAILRRCAEAAGSGG--------VVLVIEAVAGDEHAGTGM--DLRMLTYFGGKER 299
Query: 148 TEQEWGSLFVNAGFTHYKIAPI 169
+ E G L AG PI
Sbjct: 300 SLAELGELAAQAGLAVRAAHPI 321
>pdb|3G0T|A Chain A, Crystal Structure Of Putative Aspartate Aminotransferase
(Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75
A Resolution
pdb|3G0T|B Chain B, Crystal Structure Of Putative Aspartate Aminotransferase
(Np_905498.1) From Porphyromonas Gingivalis W83 At 1.75
A Resolution
Length = 437
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 137 FMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166
F++F V + +E+G+LF++ GF K+
Sbjct: 119 FVSFLVANRTHKNREYGTLFIDPGFNLNKL 148
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 29 FARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIE 64
R ++E PG+ C+V +MP TD L+ ++
Sbjct: 109 LPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVD 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,582,679
Number of Sequences: 62578
Number of extensions: 158242
Number of successful extensions: 363
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 31
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)