Query 030291
Match_columns 180
No_of_seqs 125 out of 1221
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:29:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.9 3.9E-23 8.4E-28 150.9 11.2 148 5-157 92-241 (241)
2 TIGR02716 C20_methyl_CrtF C-20 99.9 2.9E-21 6.3E-26 145.6 13.0 156 5-167 141-305 (306)
3 PF01209 Ubie_methyltran: ubiE 99.9 9.4E-22 2E-26 142.1 6.8 161 13-178 45-231 (233)
4 COG2226 UbiE Methylase involve 99.9 2.6E-20 5.6E-25 133.6 13.8 160 13-177 49-234 (238)
5 PLN02233 ubiquinone biosynthes 99.9 1.8E-20 4E-25 138.1 13.4 161 13-178 71-259 (261)
6 PRK14103 trans-aconitate 2-met 99.8 2.5E-20 5.3E-25 137.2 12.4 154 4-165 20-181 (255)
7 PTZ00098 phosphoethanolamine N 99.8 9.5E-20 2.1E-24 134.4 13.8 154 4-170 43-204 (263)
8 PLN02244 tocopherol O-methyltr 99.8 4.7E-20 1E-24 140.6 12.3 150 14-169 117-279 (340)
9 TIGR02752 MenG_heptapren 2-hep 99.8 5.9E-20 1.3E-24 133.4 11.9 166 5-180 37-231 (231)
10 TIGR00740 methyltransferase, p 99.8 1.5E-20 3.3E-25 137.1 8.4 153 14-169 52-228 (239)
11 PF02353 CMAS: Mycolic acid cy 99.8 4.7E-20 1E-24 136.1 10.3 160 3-170 52-219 (273)
12 COG2230 Cfa Cyclopropane fatty 99.8 4.9E-20 1.1E-24 134.5 9.7 157 3-171 62-226 (283)
13 KOG3178 Hydroxyindole-O-methyl 99.8 7.4E-20 1.6E-24 135.8 10.4 165 13-180 175-342 (342)
14 PRK15451 tRNA cmo(5)U34 methyl 99.8 8.7E-20 1.9E-24 133.6 10.2 152 13-167 54-229 (247)
15 PF13489 Methyltransf_23: Meth 99.8 6.2E-20 1.4E-24 125.9 8.7 137 13-165 20-160 (161)
16 PLN02396 hexaprenyldihydroxybe 99.8 1.9E-19 4E-24 135.5 10.4 146 15-167 131-288 (322)
17 TIGR00452 methyltransferase, p 99.8 1.3E-18 2.8E-23 130.4 13.5 146 13-169 119-274 (314)
18 PLN02336 phosphoethanolamine N 99.8 1.5E-18 3.3E-23 138.1 14.7 150 4-169 257-415 (475)
19 PRK11036 putative S-adenosyl-L 99.8 2.7E-19 5.9E-24 131.7 9.2 153 14-173 43-212 (255)
20 PRK15068 tRNA mo(5)U34 methylt 99.8 1.9E-18 4.2E-23 130.6 12.4 145 14-169 121-275 (322)
21 smart00828 PKS_MT Methyltransf 99.8 4.6E-18 1E-22 122.9 13.1 136 17-170 1-146 (224)
22 PLN02490 MPBQ/MSBQ methyltrans 99.8 5E-18 1.1E-22 128.3 13.5 141 14-171 112-259 (340)
23 COG2227 UbiG 2-polyprenyl-3-me 99.8 3E-19 6.6E-24 126.4 6.4 146 15-167 59-214 (243)
24 PF12847 Methyltransf_18: Meth 99.8 3.2E-18 7E-23 110.6 9.9 98 15-115 1-111 (112)
25 PRK01683 trans-aconitate 2-met 99.8 7.6E-18 1.7E-22 124.2 12.7 153 4-163 22-182 (258)
26 PRK11207 tellurite resistance 99.8 8.4E-18 1.8E-22 119.1 12.3 139 5-167 22-169 (197)
27 PRK00216 ubiE ubiquinone/menaq 99.8 2.1E-17 4.5E-22 120.4 13.6 163 13-180 49-238 (239)
28 PRK10258 biotin biosynthesis p 99.7 1.8E-17 3.8E-22 121.8 11.0 145 4-163 33-182 (251)
29 COG4106 Tam Trans-aconitate me 99.7 9.2E-18 2E-22 116.6 7.7 156 4-167 21-184 (257)
30 PRK11873 arsM arsenite S-adeno 99.7 8.1E-17 1.8E-21 119.6 13.1 145 13-168 75-230 (272)
31 PRK11705 cyclopropane fatty ac 99.7 8.3E-17 1.8E-21 124.3 13.3 153 5-171 159-315 (383)
32 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.2E-16 2.7E-21 115.2 13.3 163 13-180 37-223 (223)
33 KOG1270 Methyltransferases [Co 99.7 3.8E-18 8.3E-23 121.8 5.1 144 16-167 90-248 (282)
34 PF13847 Methyltransf_31: Meth 99.7 4.2E-17 9.2E-22 111.1 9.7 99 14-117 2-112 (152)
35 PRK08317 hypothetical protein; 99.7 6.9E-17 1.5E-21 117.6 11.2 155 5-168 11-176 (241)
36 TIGR00477 tehB tellurite resis 99.7 1.3E-16 2.8E-21 112.9 11.7 139 5-167 22-168 (195)
37 PRK06202 hypothetical protein; 99.7 1.8E-16 3.8E-21 115.3 12.0 149 14-169 59-223 (232)
38 PF08241 Methyltransf_11: Meth 99.7 4.7E-17 1E-21 101.8 7.5 88 20-113 1-95 (95)
39 PF08242 Methyltransf_12: Meth 99.7 1.2E-17 2.5E-22 105.8 4.4 87 20-111 1-99 (99)
40 TIGR02072 BioC biotin biosynth 99.7 1.1E-16 2.4E-21 116.5 9.7 136 15-167 34-175 (240)
41 TIGR02021 BchM-ChlM magnesium 99.7 2.9E-16 6.4E-21 113.1 10.8 144 14-169 54-207 (219)
42 PRK05785 hypothetical protein; 99.7 9.1E-16 2E-20 110.9 12.1 155 14-179 50-223 (226)
43 PF13649 Methyltransf_25: Meth 99.7 2.1E-16 4.6E-21 100.4 7.1 86 19-104 1-99 (101)
44 TIGR03587 Pse_Me-ase pseudamin 99.7 9.9E-16 2.2E-20 108.9 10.6 102 13-119 41-146 (204)
45 PRK12335 tellurite resistance 99.7 1.5E-15 3.2E-20 113.6 11.6 132 14-167 119-258 (287)
46 PLN02336 phosphoethanolamine N 99.7 1.1E-15 2.5E-20 121.7 11.5 140 5-164 29-178 (475)
47 PRK07580 Mg-protoporphyrin IX 99.6 2.8E-15 6E-20 108.8 11.7 145 14-170 62-216 (230)
48 PLN02585 magnesium protoporphy 99.6 2.7E-15 5.8E-20 112.8 11.8 147 15-171 144-302 (315)
49 PF08003 Methyltransf_9: Prote 99.6 5.8E-15 1.3E-19 108.3 12.4 145 14-169 114-268 (315)
50 TIGR00537 hemK_rel_arch HemK-r 99.6 1.4E-14 3.1E-19 101.2 13.6 134 13-179 17-176 (179)
51 TIGR03840 TMPT_Se_Te thiopurin 99.6 1.4E-14 3.1E-19 103.5 13.8 131 14-167 33-186 (213)
52 PRK04266 fibrillarin; Provisio 99.6 6.9E-14 1.5E-18 100.8 16.5 139 13-178 70-223 (226)
53 PRK08287 cobalt-precorrin-6Y C 99.6 4.9E-15 1.1E-19 104.3 10.2 119 13-167 29-155 (187)
54 smart00138 MeTrc Methyltransfe 99.6 2.4E-15 5.2E-20 111.0 8.7 99 14-115 98-242 (264)
55 PF03848 TehB: Tellurite resis 99.6 3.6E-15 7.7E-20 104.0 8.7 138 5-166 22-167 (192)
56 KOG1540 Ubiquinone biosynthesi 99.6 1.3E-14 2.8E-19 103.3 11.5 147 13-165 98-278 (296)
57 PRK00107 gidB 16S rRNA methylt 99.6 4.8E-14 1E-18 98.8 14.2 117 13-167 43-168 (187)
58 TIGR02081 metW methionine bios 99.6 2.4E-15 5.2E-20 106.4 7.7 147 13-169 11-168 (194)
59 PRK05134 bifunctional 3-demeth 99.6 7.8E-15 1.7E-19 106.7 10.6 147 14-167 47-204 (233)
60 TIGR03438 probable methyltrans 99.6 8.9E-15 1.9E-19 110.0 10.7 98 13-113 61-175 (301)
61 PF07021 MetW: Methionine bios 99.6 8.6E-15 1.9E-19 101.0 9.4 149 13-171 11-170 (193)
62 TIGR00138 gidB 16S rRNA methyl 99.6 5E-14 1.1E-18 98.4 13.0 91 15-114 42-141 (181)
63 TIGR01983 UbiG ubiquinone bios 99.6 2.1E-14 4.5E-19 103.8 11.1 147 15-168 45-203 (224)
64 PF06080 DUF938: Protein of un 99.6 1.3E-14 2.7E-19 101.5 9.2 162 13-180 22-204 (204)
65 PF05891 Methyltransf_PK: AdoM 99.6 1.3E-14 2.9E-19 101.9 9.2 142 14-172 54-205 (218)
66 PLN03075 nicotianamine synthas 99.6 1.9E-14 4.2E-19 106.4 10.0 98 13-114 121-232 (296)
67 PRK13255 thiopurine S-methyltr 99.6 6.2E-14 1.3E-18 100.6 12.1 131 14-167 36-189 (218)
68 PF05401 NodS: Nodulation prot 99.6 4.9E-15 1.1E-19 102.4 5.9 131 13-168 41-179 (201)
69 KOG2361 Predicted methyltransf 99.6 9.5E-15 2.1E-19 103.2 6.8 147 16-167 72-236 (264)
70 KOG4300 Predicted methyltransf 99.6 2.1E-14 4.6E-19 99.3 8.1 150 14-172 75-236 (252)
71 PRK06922 hypothetical protein; 99.5 3.2E-14 6.9E-19 114.4 9.9 103 14-119 417-541 (677)
72 PRK00517 prmA ribosomal protei 99.5 3.2E-13 7E-18 99.1 12.2 126 13-180 117-250 (250)
73 TIGR02469 CbiT precorrin-6Y C5 99.5 1E-13 2.2E-18 91.0 7.8 100 5-114 11-121 (124)
74 PTZ00146 fibrillarin; Provisio 99.5 3.1E-12 6.7E-17 94.5 15.5 133 13-171 130-274 (293)
75 PRK15001 SAM-dependent 23S rib 99.5 2.5E-13 5.5E-18 104.3 10.2 106 5-115 220-340 (378)
76 PF05175 MTS: Methyltransferas 99.5 1.9E-13 4.2E-18 94.7 7.9 99 14-115 30-140 (170)
77 PRK09489 rsmC 16S ribosomal RN 99.5 4.8E-13 1E-17 102.0 10.3 100 14-116 195-304 (342)
78 TIGR03534 RF_mod_PrmC protein- 99.5 2.1E-12 4.5E-17 94.8 12.4 124 15-170 87-243 (251)
79 PF12147 Methyltransf_20: Puta 99.5 3.9E-12 8.4E-17 92.8 13.3 157 14-179 134-310 (311)
80 PRK00121 trmB tRNA (guanine-N( 99.4 5.3E-13 1.1E-17 95.0 8.3 99 14-115 39-156 (202)
81 COG4976 Predicted methyltransf 99.4 3.8E-14 8.1E-19 99.6 1.8 144 4-169 116-266 (287)
82 COG4123 Predicted O-methyltran 99.4 1.2E-12 2.5E-17 94.4 9.2 125 13-169 42-195 (248)
83 PRK13944 protein-L-isoaspartat 99.4 8.2E-13 1.8E-17 94.2 7.9 97 5-114 64-172 (205)
84 TIGR00091 tRNA (guanine-N(7)-) 99.4 1.5E-12 3.4E-17 92.0 8.9 99 14-115 15-132 (194)
85 PRK11188 rrmJ 23S rRNA methylt 99.4 8.4E-12 1.8E-16 89.2 12.6 97 13-116 49-166 (209)
86 PRK09328 N5-glutamine S-adenos 99.4 7.5E-12 1.6E-16 93.2 12.8 134 13-178 106-273 (275)
87 PLN02232 ubiquinone biosynthes 99.4 1.3E-12 2.9E-17 89.6 7.2 128 43-176 1-156 (160)
88 PRK13942 protein-L-isoaspartat 99.4 1.8E-12 3.8E-17 92.9 8.0 97 5-114 68-175 (212)
89 PRK14968 putative methyltransf 99.4 3.1E-11 6.8E-16 84.8 13.9 122 14-168 22-173 (188)
90 PHA03411 putative methyltransf 99.4 1.4E-11 3.1E-16 90.2 11.9 124 15-163 64-209 (279)
91 PRK11088 rrmA 23S rRNA methylt 99.4 2.1E-12 4.7E-17 96.0 7.2 91 14-116 84-182 (272)
92 TIGR00080 pimt protein-L-isoas 99.4 3.1E-12 6.7E-17 92.0 7.8 98 4-114 68-176 (215)
93 PF05724 TPMT: Thiopurine S-me 99.4 1.2E-11 2.6E-16 88.7 10.7 133 13-168 35-190 (218)
94 TIGR00406 prmA ribosomal prote 99.4 5.7E-12 1.2E-16 94.3 9.2 121 14-172 158-287 (288)
95 PF06325 PrmA: Ribosomal prote 99.3 8E-12 1.7E-16 93.1 9.7 128 13-180 159-295 (295)
96 COG2242 CobL Precorrin-6B meth 99.3 4.1E-11 8.8E-16 82.4 12.3 100 5-115 26-135 (187)
97 PRK14966 unknown domain/N5-glu 99.3 4E-11 8.7E-16 92.7 13.6 131 14-176 250-414 (423)
98 PRK00377 cbiT cobalt-precorrin 99.3 3.8E-11 8.2E-16 85.2 12.2 97 7-113 34-143 (198)
99 COG2813 RsmC 16S RNA G1207 met 99.3 8.1E-11 1.8E-15 86.8 13.8 108 4-116 149-267 (300)
100 COG2264 PrmA Ribosomal protein 99.3 2E-11 4.4E-16 90.3 10.6 129 13-178 160-298 (300)
101 TIGR00536 hemK_fam HemK family 99.3 3.3E-11 7.1E-16 90.1 11.7 94 17-113 116-242 (284)
102 PRK13256 thiopurine S-methyltr 99.3 2.8E-11 6E-16 86.8 10.5 99 14-117 42-165 (226)
103 PF05219 DREV: DREV methyltran 99.3 3.4E-11 7.4E-16 86.8 10.6 143 15-170 94-242 (265)
104 TIGR03533 L3_gln_methyl protei 99.3 2.3E-11 5.1E-16 90.8 9.7 96 15-113 121-249 (284)
105 PRK14121 tRNA (guanine-N(7)-)- 99.3 1.9E-11 4E-16 93.9 9.0 99 14-115 121-235 (390)
106 KOG3010 Methyltransferase [Gen 99.3 7.9E-12 1.7E-16 88.7 6.0 91 17-115 35-137 (261)
107 KOG1271 Methyltransferases [Ge 99.3 2.2E-11 4.8E-16 82.9 7.9 124 15-170 67-207 (227)
108 PRK14967 putative methyltransf 99.3 1.1E-10 2.3E-15 84.5 11.9 100 13-116 34-160 (223)
109 PRK07402 precorrin-6B methylas 99.3 4.3E-11 9.4E-16 84.8 9.4 101 5-116 32-143 (196)
110 PRK04457 spermidine synthase; 99.3 3.7E-11 8.1E-16 88.7 8.6 98 14-114 65-176 (262)
111 PRK01544 bifunctional N5-gluta 99.2 3E-10 6.4E-15 91.1 14.0 123 15-169 138-294 (506)
112 PRK11805 N5-glutamine S-adenos 99.2 5.6E-11 1.2E-15 89.6 9.2 94 17-113 135-261 (307)
113 TIGR00438 rrmJ cell division p 99.2 2E-10 4.3E-15 80.9 11.4 96 13-115 30-146 (188)
114 PRK00312 pcm protein-L-isoaspa 99.2 5.4E-11 1.2E-15 85.4 8.2 95 6-115 71-175 (212)
115 PF13659 Methyltransf_26: Meth 99.2 5.5E-11 1.2E-15 77.2 7.5 96 16-115 1-115 (117)
116 cd02440 AdoMet_MTases S-adenos 99.2 8.6E-11 1.9E-15 73.8 8.0 92 18-114 1-103 (107)
117 KOG2899 Predicted methyltransf 99.2 1.9E-10 4.1E-15 81.8 10.2 144 12-165 55-254 (288)
118 TIGR01177 conserved hypothetic 99.2 8.7E-11 1.9E-15 89.6 9.3 122 13-171 180-318 (329)
119 COG2518 Pcm Protein-L-isoaspar 99.2 5.9E-11 1.3E-15 83.3 7.2 98 4-116 63-170 (209)
120 PRK00811 spermidine synthase; 99.2 1.3E-10 2.8E-15 86.8 9.2 98 14-114 75-190 (283)
121 TIGR03704 PrmC_rel_meth putati 99.2 4.8E-10 1E-14 82.3 12.0 96 16-114 87-215 (251)
122 PF01739 CheR: CheR methyltran 99.1 6.6E-11 1.4E-15 83.4 5.4 97 15-114 31-174 (196)
123 PF01135 PCMT: Protein-L-isoas 99.1 8.2E-11 1.8E-15 83.8 5.1 99 4-115 63-172 (209)
124 COG2890 HemK Methylase of poly 99.1 3E-09 6.5E-14 79.2 13.2 122 18-171 113-266 (280)
125 PRK03612 spermidine synthase; 99.1 1.3E-09 2.9E-14 87.7 11.8 98 14-114 296-414 (521)
126 PRK01581 speE spermidine synth 99.1 6.6E-10 1.4E-14 84.5 9.3 99 13-114 148-267 (374)
127 PRK13943 protein-L-isoaspartat 99.1 3.6E-10 7.8E-15 85.5 7.9 92 13-115 78-180 (322)
128 KOG2940 Predicted methyltransf 99.1 4.5E-11 9.7E-16 84.4 1.9 143 13-167 70-226 (325)
129 smart00650 rADc Ribosomal RNA 99.1 4.9E-10 1.1E-14 77.6 6.9 80 1-84 1-88 (169)
130 TIGR00417 speE spermidine synt 99.0 1.4E-09 3.1E-14 80.8 8.9 98 14-114 71-185 (270)
131 PLN02672 methionine S-methyltr 99.0 2.4E-09 5.1E-14 91.5 11.0 65 16-80 119-210 (1082)
132 COG1352 CheR Methylase of chem 99.0 3E-09 6.5E-14 78.2 9.6 97 15-114 96-240 (268)
133 PLN02366 spermidine synthase 99.0 3E-09 6.5E-14 80.1 9.6 97 14-113 90-204 (308)
134 PRK10901 16S rRNA methyltransf 99.0 4.1E-09 8.9E-14 83.1 10.6 105 13-120 242-377 (427)
135 PRK10611 chemotaxis methyltran 99.0 1.8E-09 3.8E-14 80.3 7.9 97 15-114 115-261 (287)
136 PF05148 Methyltransf_8: Hypot 99.0 1.8E-08 3.9E-13 70.7 12.3 125 13-180 70-197 (219)
137 COG2519 GCD14 tRNA(1-methylade 99.0 3.5E-09 7.5E-14 76.2 8.6 101 5-117 86-197 (256)
138 PF02390 Methyltransf_4: Putat 99.0 3.4E-09 7.3E-14 74.9 8.1 96 17-115 19-133 (195)
139 KOG1541 Predicted protein carb 99.0 6.2E-10 1.3E-14 78.2 4.1 96 15-115 50-160 (270)
140 PLN02781 Probable caffeoyl-CoA 99.0 6.5E-09 1.4E-13 75.6 9.3 95 13-115 66-178 (234)
141 PF08704 GCD14: tRNA methyltra 98.9 4.5E-09 9.7E-14 76.5 7.9 100 5-116 32-147 (247)
142 PF11968 DUF3321: Putative met 98.9 1.2E-08 2.6E-13 71.9 9.6 121 16-171 52-184 (219)
143 TIGR00563 rsmB ribosomal RNA s 98.9 6.5E-09 1.4E-13 82.0 9.3 107 13-122 236-375 (426)
144 PRK14902 16S rRNA methyltransf 98.9 7.2E-09 1.6E-13 82.2 9.4 103 13-118 248-382 (444)
145 PRK13168 rumA 23S rRNA m(5)U19 98.9 8.1E-09 1.8E-13 81.9 9.1 91 13-114 295-399 (443)
146 PHA03412 putative methyltransf 98.9 1.3E-08 2.9E-13 73.1 9.3 95 15-113 49-160 (241)
147 COG3963 Phospholipid N-methylt 98.9 1.1E-08 2.4E-13 68.9 8.0 109 4-117 39-158 (194)
148 PF03291 Pox_MCEL: mRNA cappin 98.9 7.9E-09 1.7E-13 78.5 8.3 98 15-116 62-187 (331)
149 PRK14904 16S rRNA methyltransf 98.9 1.4E-08 3E-13 80.6 9.9 106 13-121 248-383 (445)
150 PRK14901 16S rRNA methyltransf 98.9 1.5E-08 3.2E-13 80.2 9.4 103 13-118 250-387 (434)
151 PRK14903 16S rRNA methyltransf 98.8 3.5E-08 7.7E-13 77.9 10.5 108 13-123 235-374 (431)
152 PF10294 Methyltransf_16: Puta 98.8 2.1E-08 4.6E-13 69.6 8.2 101 13-118 43-159 (173)
153 TIGR00446 nop2p NOL1/NOP2/sun 98.8 3.2E-08 7E-13 73.3 9.6 105 13-120 69-204 (264)
154 PRK14896 ksgA 16S ribosomal RN 98.8 4.9E-09 1.1E-13 77.4 4.8 78 3-84 19-102 (258)
155 KOG3045 Predicted RNA methylas 98.8 1E-07 2.3E-12 68.7 11.2 123 13-180 178-303 (325)
156 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.2E-08 6.9E-13 82.5 9.9 96 15-114 538-655 (702)
157 COG0220 Predicted S-adenosylme 98.8 2.2E-08 4.7E-13 72.1 7.5 96 17-115 50-164 (227)
158 PF01596 Methyltransf_3: O-met 98.8 1.3E-08 2.8E-13 72.3 6.3 95 13-116 43-155 (205)
159 COG4122 Predicted O-methyltran 98.8 3.8E-08 8.3E-13 70.2 8.5 97 13-118 57-168 (219)
160 PRK00274 ksgA 16S ribosomal RN 98.8 6.1E-09 1.3E-13 77.5 4.3 76 3-82 32-114 (272)
161 PF04672 Methyltransf_19: S-ad 98.8 3.4E-08 7.4E-13 72.1 7.6 141 15-165 68-233 (267)
162 TIGR00755 ksgA dimethyladenosi 98.7 4.1E-08 8.8E-13 72.4 7.2 76 3-82 19-103 (253)
163 PLN02476 O-methyltransferase 98.7 9E-08 2E-12 70.8 8.9 96 13-116 116-229 (278)
164 PTZ00338 dimethyladenosine tra 98.7 1.2E-08 2.6E-13 76.4 4.4 82 3-89 26-116 (294)
165 KOG0820 Ribosomal RNA adenine 98.7 2.5E-08 5.4E-13 72.3 4.6 76 2-81 47-131 (315)
166 PLN02823 spermine synthase 98.7 1.2E-07 2.6E-12 72.2 8.5 96 14-113 102-218 (336)
167 PRK11727 23S rRNA mA1618 methy 98.6 8.6E-07 1.9E-11 67.1 12.1 144 15-169 114-293 (321)
168 PF07942 N2227: N2227-like pro 98.6 7.8E-07 1.7E-11 65.5 11.5 135 14-168 55-242 (270)
169 KOG3191 Predicted N6-DNA-methy 98.6 1.2E-06 2.6E-11 60.1 11.4 133 15-178 43-206 (209)
170 KOG1975 mRNA cap methyltransfe 98.6 7.3E-08 1.6E-12 71.5 5.8 98 13-114 115-236 (389)
171 KOG3987 Uncharacterized conser 98.6 3.8E-09 8.2E-14 73.6 -1.2 94 14-114 111-206 (288)
172 PRK04148 hypothetical protein; 98.6 1.6E-07 3.5E-12 61.8 6.3 89 5-103 8-102 (134)
173 PRK15128 23S rRNA m(5)C1962 me 98.6 3.8E-07 8.3E-12 71.1 9.3 98 14-116 219-340 (396)
174 TIGR00478 tly hemolysin TlyA f 98.6 5.1E-07 1.1E-11 65.2 9.2 132 15-169 75-218 (228)
175 KOG2904 Predicted methyltransf 98.6 3E-07 6.5E-12 66.9 8.0 66 15-80 148-229 (328)
176 COG2263 Predicted RNA methylas 98.6 1.3E-07 2.8E-12 65.2 5.8 65 15-80 45-115 (198)
177 PRK03522 rumB 23S rRNA methylu 98.6 1E-07 2.2E-12 72.4 5.8 64 15-80 173-247 (315)
178 KOG1500 Protein arginine N-met 98.6 2.1E-07 4.6E-12 69.6 7.1 94 16-113 178-280 (517)
179 TIGR03439 methyl_EasF probable 98.6 1.7E-07 3.6E-12 70.9 6.6 99 13-114 74-196 (319)
180 KOG1499 Protein arginine N-met 98.6 1.7E-07 3.7E-12 70.4 6.1 95 14-112 59-164 (346)
181 COG0421 SpeE Spermidine syntha 98.6 4.1E-07 8.9E-12 67.6 8.0 98 14-114 75-189 (282)
182 KOG1661 Protein-L-isoaspartate 98.5 1.1E-07 2.3E-12 66.5 4.5 97 7-114 74-192 (237)
183 PF09243 Rsm22: Mitochondrial 98.5 2.5E-07 5.4E-12 68.9 6.3 101 15-120 33-144 (274)
184 COG2521 Predicted archaeal met 98.5 3.7E-06 8E-11 60.0 11.7 131 14-170 133-279 (287)
185 PLN02589 caffeoyl-CoA O-methyl 98.5 1E-06 2.2E-11 64.4 8.3 96 13-117 77-191 (247)
186 PRK10909 rsmD 16S rRNA m(2)G96 98.5 9E-07 2E-11 62.7 7.4 94 14-114 52-158 (199)
187 COG0030 KsgA Dimethyladenosine 98.4 3.4E-07 7.4E-12 66.9 5.0 82 3-89 20-110 (259)
188 PRK01544 bifunctional N5-gluta 98.4 9.9E-07 2.1E-11 71.1 7.7 98 15-115 347-462 (506)
189 PF01564 Spermine_synth: Sperm 98.4 5.9E-07 1.3E-11 65.8 5.8 99 14-115 75-191 (246)
190 TIGR00479 rumA 23S rRNA (uraci 98.4 6.1E-07 1.3E-11 71.1 6.0 91 13-113 290-394 (431)
191 PF02527 GidB: rRNA small subu 98.4 1.1E-06 2.5E-11 61.4 6.7 89 18-115 51-148 (184)
192 PF08123 DOT1: Histone methyla 98.4 6.8E-07 1.5E-11 63.6 5.5 102 4-114 33-156 (205)
193 PRK00536 speE spermidine synth 98.4 2.7E-06 5.8E-11 62.6 8.0 88 14-114 71-170 (262)
194 KOG1331 Predicted methyltransf 98.4 5.6E-07 1.2E-11 65.9 4.3 98 13-117 43-145 (293)
195 PF05185 PRMT5: PRMT5 arginine 98.3 1.2E-06 2.5E-11 69.4 6.1 94 16-113 187-294 (448)
196 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1E-06 2.2E-11 64.5 4.9 136 15-168 56-239 (256)
197 TIGR02085 meth_trns_rumB 23S r 98.3 2.2E-06 4.8E-11 66.7 6.3 90 15-114 233-333 (374)
198 PRK11760 putative 23S rRNA C24 98.3 0.00016 3.5E-09 54.9 15.9 84 13-104 209-295 (357)
199 PRK00050 16S rRNA m(4)C1402 me 98.2 3.4E-06 7.4E-11 63.1 5.6 79 1-81 7-98 (296)
200 PF04816 DUF633: Family of unk 98.1 4.8E-05 1E-09 54.2 10.4 123 19-178 1-137 (205)
201 COG4262 Predicted spermidine s 98.1 9.6E-05 2.1E-09 56.3 11.3 97 13-115 287-407 (508)
202 COG4301 Uncharacterized conser 98.1 1E-05 2.2E-10 58.3 5.8 98 14-114 77-192 (321)
203 PF03141 Methyltransf_29: Puta 98.1 1.6E-06 3.4E-11 68.2 1.6 98 14-119 116-223 (506)
204 PF01728 FtsJ: FtsJ-like methy 98.1 7.7E-06 1.7E-10 57.2 4.9 94 15-115 23-139 (181)
205 COG1889 NOP1 Fibrillarin-like 98.1 0.00035 7.6E-09 49.1 12.7 137 7-171 70-217 (231)
206 COG0357 GidB Predicted S-adeno 98.0 1.4E-05 2.9E-10 57.1 5.6 89 16-113 68-166 (215)
207 COG1092 Predicted SAM-dependen 98.0 1.2E-05 2.6E-10 62.4 5.4 98 16-118 218-339 (393)
208 TIGR00095 RNA methyltransferas 98.0 4.4E-05 9.6E-10 53.8 7.9 95 15-117 49-160 (189)
209 PRK04338 N(2),N(2)-dimethylgua 98.0 4.4E-05 9.5E-10 59.5 8.4 92 16-116 58-159 (382)
210 COG1041 Predicted DNA modifica 98.0 0.00015 3.2E-09 55.1 10.7 99 13-116 195-311 (347)
211 KOG2798 Putative trehalase [Ca 98.0 7E-05 1.5E-09 55.8 8.7 134 15-167 150-336 (369)
212 COG0293 FtsJ 23S rRNA methylas 98.0 8.5E-05 1.8E-09 52.5 8.8 107 4-118 35-162 (205)
213 TIGR02143 trmA_only tRNA (urac 98.0 4E-06 8.7E-11 64.7 2.0 51 17-69 199-256 (353)
214 KOG1663 O-methyltransferase [S 97.9 0.00011 2.5E-09 52.4 8.9 95 13-116 71-183 (237)
215 COG4798 Predicted methyltransf 97.9 0.00019 4.1E-09 50.0 9.6 144 4-166 39-203 (238)
216 PF02475 Met_10: Met-10+ like- 97.9 2.9E-05 6.3E-10 55.0 5.7 86 13-104 99-194 (200)
217 COG4076 Predicted RNA methylas 97.9 3.1E-05 6.8E-10 53.6 5.0 93 16-113 33-133 (252)
218 KOG2915 tRNA(1-methyladenosine 97.9 6.6E-05 1.4E-09 54.9 6.9 92 4-104 96-201 (314)
219 PF00398 RrnaAD: Ribosomal RNA 97.9 1.8E-05 3.9E-10 58.6 4.0 94 2-104 19-123 (262)
220 TIGR00027 mthyl_TIGR00027 meth 97.8 0.00013 2.7E-09 54.1 8.0 147 14-166 80-248 (260)
221 KOG3420 Predicted RNA methylas 97.8 1.5E-05 3.3E-10 52.8 2.6 69 15-84 48-125 (185)
222 PRK05031 tRNA (uracil-5-)-meth 97.8 1.7E-05 3.6E-10 61.5 3.3 51 17-69 208-265 (362)
223 PF07091 FmrO: Ribosomal RNA m 97.8 1.7E-05 3.8E-10 57.4 3.1 99 13-116 103-209 (251)
224 KOG3201 Uncharacterized conser 97.8 1.1E-05 2.5E-10 54.3 1.7 96 16-116 30-141 (201)
225 COG3897 Predicted methyltransf 97.8 0.00012 2.5E-09 51.1 6.3 99 15-119 79-183 (218)
226 PF01170 UPF0020: Putative RNA 97.7 5.2E-05 1.1E-09 53.0 4.6 98 5-104 20-143 (179)
227 KOG1269 SAM-dependent methyltr 97.7 4.5E-05 9.7E-10 58.8 3.9 100 12-117 107-217 (364)
228 PF10672 Methyltrans_SAM: S-ad 97.7 0.00012 2.5E-09 54.8 5.8 97 15-116 123-239 (286)
229 PRK11933 yebU rRNA (cytosine-C 97.6 0.00055 1.2E-08 54.8 9.4 103 13-118 111-245 (470)
230 COG1189 Predicted rRNA methyla 97.6 0.00051 1.1E-08 49.5 8.0 140 13-169 77-225 (245)
231 COG2384 Predicted SAM-dependen 97.6 0.0028 6.1E-08 45.2 11.1 88 13-104 14-112 (226)
232 PF01269 Fibrillarin: Fibrilla 97.6 0.00083 1.8E-08 48.0 8.5 133 13-171 71-215 (229)
233 PF09445 Methyltransf_15: RNA 97.5 4.8E-05 1E-09 52.0 2.0 62 17-80 1-76 (163)
234 COG0500 SmtA SAM-dependent met 97.5 0.0012 2.5E-08 44.3 8.7 95 19-120 52-160 (257)
235 PF13578 Methyltransf_24: Meth 97.5 9.2E-05 2E-09 47.0 2.8 90 20-115 1-105 (106)
236 KOG3115 Methyltransferase-like 97.5 0.00022 4.8E-09 50.0 4.7 98 15-115 60-183 (249)
237 TIGR01444 fkbM_fam methyltrans 97.4 0.00031 6.7E-09 47.0 5.0 54 18-71 1-61 (143)
238 PF13679 Methyltransf_32: Meth 97.4 0.00038 8.1E-09 46.7 5.2 70 13-82 23-108 (141)
239 KOG2918 Carboxymethyl transfer 97.4 0.0014 3.1E-08 49.0 8.3 153 13-171 85-280 (335)
240 PF03059 NAS: Nicotianamine sy 97.4 0.0012 2.7E-08 49.0 8.0 96 15-114 120-229 (276)
241 PF02384 N6_Mtase: N-6 DNA Met 97.4 0.00027 5.9E-09 53.6 4.5 101 13-116 44-184 (311)
242 PF03602 Cons_hypoth95: Conser 97.3 0.0012 2.7E-08 46.2 7.1 98 15-119 42-156 (183)
243 COG5459 Predicted rRNA methyla 97.3 0.0001 2.2E-09 55.9 1.6 103 16-121 114-231 (484)
244 TIGR02987 met_A_Alw26 type II 97.3 0.00072 1.6E-08 55.1 6.1 66 15-80 31-119 (524)
245 TIGR00308 TRM1 tRNA(guanine-26 97.2 0.0019 4.2E-08 50.3 7.7 92 17-117 46-149 (374)
246 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0024 5.1E-08 53.9 8.7 100 14-116 189-348 (702)
247 KOG4589 Cell division protein 97.2 0.0095 2E-07 41.6 9.9 102 7-116 62-185 (232)
248 KOG2793 Putative N2,N2-dimethy 97.2 0.0042 9.1E-08 45.4 8.7 96 15-116 86-200 (248)
249 TIGR00006 S-adenosyl-methyltra 97.1 0.0011 2.3E-08 50.1 5.4 78 1-80 8-99 (305)
250 COG3315 O-Methyltransferase in 97.1 0.0023 4.9E-08 48.3 7.1 147 16-167 93-263 (297)
251 PF04989 CmcI: Cephalosporin h 97.1 0.0041 8.8E-08 44.2 7.4 97 15-117 32-149 (206)
252 KOG1709 Guanidinoacetate methy 97.1 0.0016 3.5E-08 46.3 5.2 99 13-117 99-208 (271)
253 PF05958 tRNA_U5-meth_tr: tRNA 97.0 0.00029 6.3E-09 54.5 1.6 49 17-67 198-253 (352)
254 COG2265 TrmA SAM-dependent met 97.0 0.001 2.2E-08 52.8 4.0 65 13-79 291-368 (432)
255 PLN02668 indole-3-acetate carb 96.9 0.02 4.4E-07 44.7 10.6 150 15-167 63-308 (386)
256 COG2520 Predicted methyltransf 96.8 0.0051 1.1E-07 47.1 6.8 96 14-119 187-293 (341)
257 PF03269 DUF268: Caenorhabditi 96.8 0.024 5.2E-07 38.6 9.0 100 16-120 2-116 (177)
258 COG1064 AdhP Zn-dependent alco 96.8 0.039 8.4E-07 42.4 11.2 93 13-118 164-262 (339)
259 KOG2352 Predicted spermine/spe 96.8 0.0083 1.8E-07 47.6 7.8 100 14-117 46-163 (482)
260 PF07757 AdoMet_MTase: Predict 96.8 0.0013 2.8E-08 41.4 2.6 32 14-47 57-88 (112)
261 PF01861 DUF43: Protein of unk 96.7 0.047 1E-06 39.7 10.7 85 14-104 43-140 (243)
262 COG0144 Sun tRNA and rRNA cyto 96.7 0.024 5.1E-07 44.0 9.7 109 13-124 154-297 (355)
263 PF03492 Methyltransf_7: SAM d 96.5 0.019 4.1E-07 44.2 7.7 151 13-166 14-251 (334)
264 PF04072 LCM: Leucine carboxyl 96.3 0.011 2.3E-07 41.5 5.0 84 15-98 78-182 (183)
265 COG0742 N6-adenine-specific me 96.3 0.024 5.1E-07 39.7 6.5 98 15-117 43-155 (187)
266 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.2 0.026 5.7E-07 42.4 7.0 107 13-122 83-226 (283)
267 PF01795 Methyltransf_5: MraW 96.1 0.0065 1.4E-07 46.0 3.5 67 1-69 8-80 (310)
268 COG4627 Uncharacterized protei 96.1 0.0017 3.6E-08 43.8 0.3 42 72-116 46-87 (185)
269 COG0116 Predicted N6-adenine-s 95.9 0.0089 1.9E-07 46.3 3.5 68 13-80 189-306 (381)
270 PF06859 Bin3: Bicoid-interact 95.9 0.0053 1.2E-07 38.9 1.8 87 73-169 1-93 (110)
271 KOG1596 Fibrillarin and relate 95.8 0.058 1.3E-06 39.3 6.8 96 13-116 154-262 (317)
272 PRK10742 putative methyltransf 95.7 0.021 4.5E-07 41.8 4.4 73 4-80 77-171 (250)
273 KOG2187 tRNA uracil-5-methyltr 95.6 0.0064 1.4E-07 48.6 1.7 55 13-69 381-442 (534)
274 PRK01747 mnmC bifunctional tRN 95.5 0.11 2.4E-06 43.8 8.7 94 16-112 58-203 (662)
275 KOG2730 Methylase [General fun 95.4 0.012 2.5E-07 42.2 2.1 53 15-69 94-154 (263)
276 COG1063 Tdh Threonine dehydrog 95.3 0.41 8.9E-06 37.2 10.7 95 15-120 168-274 (350)
277 KOG4058 Uncharacterized conser 95.3 0.018 3.9E-07 38.6 2.7 106 4-120 63-177 (199)
278 PF02636 Methyltransf_28: Puta 95.3 0.041 9E-07 40.6 4.9 34 16-49 19-60 (252)
279 PF12692 Methyltransf_17: S-ad 95.2 0.089 1.9E-06 35.3 5.8 54 16-69 29-82 (160)
280 KOG0024 Sorbitol dehydrogenase 95.1 0.29 6.3E-06 37.3 8.8 96 13-119 167-277 (354)
281 KOG1562 Spermidine synthase [A 95.0 0.072 1.6E-06 40.0 5.4 100 13-115 119-236 (337)
282 COG0275 Predicted S-adenosylme 94.9 0.052 1.1E-06 40.8 4.5 66 2-69 12-84 (314)
283 PF05971 Methyltransf_10: Prot 94.8 0.037 8.1E-07 41.7 3.6 76 14-89 101-193 (299)
284 PRK09424 pntA NAD(P) transhydr 94.5 0.4 8.6E-06 39.2 9.0 96 14-116 163-286 (509)
285 PF03141 Methyltransf_29: Puta 94.3 0.097 2.1E-06 42.0 4.9 95 13-115 363-467 (506)
286 PF11312 DUF3115: Protein of u 94.1 0.092 2E-06 39.7 4.3 99 15-116 86-243 (315)
287 PF04445 SAM_MT: Putative SAM- 94.0 0.047 1E-06 39.7 2.5 77 4-84 64-162 (234)
288 PF11899 DUF3419: Protein of u 93.8 0.17 3.6E-06 39.8 5.3 58 57-117 274-336 (380)
289 cd08283 FDH_like_1 Glutathione 93.6 1 2.3E-05 35.3 9.6 100 13-117 182-308 (386)
290 PF05430 Methyltransf_30: S-ad 93.6 0.68 1.5E-05 30.3 7.2 87 57-178 30-121 (124)
291 COG1565 Uncharacterized conser 93.5 0.064 1.4E-06 41.3 2.5 39 13-51 75-121 (370)
292 KOG2920 Predicted methyltransf 92.9 0.14 3E-06 38.2 3.4 97 14-115 115-234 (282)
293 PF05206 TRM13: Methyltransfer 92.7 0.16 3.4E-06 37.7 3.6 35 13-47 16-55 (259)
294 COG3510 CmcI Cephalosporin hyd 92.7 1.3 2.8E-05 31.4 7.7 104 14-122 68-187 (237)
295 cd08237 ribitol-5-phosphate_DH 92.6 3.8 8.1E-05 31.6 11.4 95 13-117 161-258 (341)
296 KOG1099 SAM-dependent methyltr 92.5 0.25 5.5E-06 35.8 4.2 95 12-113 38-161 (294)
297 PF06962 rRNA_methylase: Putat 92.5 0.43 9.4E-06 31.9 5.1 74 41-119 1-96 (140)
298 KOG2651 rRNA adenine N-6-methy 92.3 0.13 2.8E-06 40.0 2.7 41 14-55 152-193 (476)
299 KOG1501 Arginine N-methyltrans 92.0 0.19 4.1E-06 39.9 3.3 52 15-67 66-125 (636)
300 KOG3924 Putative protein methy 91.7 0.19 4.2E-06 39.2 3.1 107 5-119 184-312 (419)
301 cd00315 Cyt_C5_DNA_methylase C 91.7 2.6 5.7E-05 31.6 9.1 63 18-81 2-70 (275)
302 PF03686 UPF0146: Uncharacteri 91.4 0.58 1.3E-05 30.6 4.6 79 14-103 12-95 (127)
303 PF03514 GRAS: GRAS domain fam 91.4 2.7 5.9E-05 33.0 9.3 107 5-118 102-246 (374)
304 COG1255 Uncharacterized protei 91.1 2.9 6.2E-05 27.0 8.4 79 14-103 12-95 (129)
305 TIGR02822 adh_fam_2 zinc-bindi 90.7 3.1 6.7E-05 31.9 8.9 91 13-117 163-256 (329)
306 TIGR01202 bchC 2-desacetyl-2-h 90.4 6.3 0.00014 29.8 11.3 86 15-117 144-233 (308)
307 PF11599 AviRa: RRNA methyltra 90.4 0.96 2.1E-05 32.6 5.3 97 14-113 50-212 (246)
308 COG2933 Predicted SAM-dependen 90.2 1.5 3.3E-05 32.6 6.3 85 12-104 208-295 (358)
309 PF02153 PDH: Prephenate dehyd 90.1 0.63 1.4E-05 34.5 4.5 70 29-104 1-71 (258)
310 COG0287 TyrA Prephenate dehydr 90.1 1.7 3.7E-05 32.7 6.8 88 17-113 4-95 (279)
311 PF00107 ADH_zinc_N: Zinc-bind 89.5 3.2 7E-05 26.7 7.2 82 25-118 1-92 (130)
312 PRK09880 L-idonate 5-dehydroge 88.7 6.1 0.00013 30.4 9.2 91 14-116 168-267 (343)
313 cd08230 glucose_DH Glucose deh 88.7 9.4 0.0002 29.4 11.0 92 14-118 171-272 (355)
314 PRK11524 putative methyltransf 88.6 0.31 6.8E-06 36.6 2.0 41 14-56 207-248 (284)
315 TIGR00561 pntA NAD(P) transhyd 88.2 2.2 4.7E-05 35.0 6.6 93 15-114 163-283 (511)
316 KOG2352 Predicted spermine/spe 88.1 1.9 4.1E-05 34.8 6.0 102 13-117 293-418 (482)
317 PF02254 TrkA_N: TrkA-N domain 87.9 4.3 9.3E-05 25.7 6.8 81 24-113 4-94 (116)
318 cd08254 hydroxyacyl_CoA_DH 6-h 87.7 6.3 0.00014 29.8 8.7 91 13-116 163-264 (338)
319 KOG0822 Protein kinase inhibit 87.1 1.9 4.1E-05 35.3 5.5 88 16-104 368-470 (649)
320 cd00401 AdoHcyase S-adenosyl-L 87.0 4.2 9.1E-05 32.5 7.4 87 14-115 200-289 (413)
321 PRK07417 arogenate dehydrogena 86.7 3.5 7.7E-05 30.8 6.7 79 18-104 2-83 (279)
322 COG0686 Ald Alanine dehydrogen 86.6 3.5 7.6E-05 31.6 6.4 91 16-112 168-265 (371)
323 TIGR03366 HpnZ_proposed putati 86.5 11 0.00025 28.0 10.0 92 14-117 119-220 (280)
324 PF07109 Mg-por_mtran_C: Magne 86.3 6 0.00013 24.7 6.4 80 81-170 3-84 (97)
325 PRK07502 cyclohexadienyl dehyd 86.0 6 0.00013 30.0 7.7 84 16-104 6-92 (307)
326 PF10354 DUF2431: Domain of un 86.0 9.2 0.0002 26.4 10.7 119 22-169 3-153 (166)
327 KOG2198 tRNA cytosine-5-methyl 85.9 7.7 0.00017 30.4 8.0 109 13-124 153-305 (375)
328 cd05188 MDR Medium chain reduc 85.8 11 0.00024 27.2 11.8 92 14-117 133-234 (271)
329 COG1748 LYS9 Saccharopine dehy 83.1 8.1 0.00018 30.6 7.3 66 17-82 2-77 (389)
330 cd05213 NAD_bind_Glutamyl_tRNA 83.1 11 0.00024 28.8 8.0 122 15-158 177-302 (311)
331 KOG2539 Mitochondrial/chloropl 83.1 3.8 8.3E-05 33.0 5.5 99 16-117 201-317 (491)
332 PRK13699 putative methylase; P 82.6 1.4 3E-05 32.0 2.9 40 14-55 162-202 (227)
333 PF02005 TRM: N2,N2-dimethylgu 82.4 5.8 0.00013 31.3 6.3 94 15-117 49-156 (377)
334 cd08281 liver_ADH_like1 Zinc-d 82.3 16 0.00035 28.4 8.8 93 13-117 189-292 (371)
335 PF05711 TylF: Macrocin-O-meth 82.1 7.1 0.00015 28.9 6.3 97 14-115 73-212 (248)
336 TIGR03451 mycoS_dep_FDH mycoth 82.1 21 0.00046 27.6 9.4 93 13-117 174-278 (358)
337 PHA01634 hypothetical protein 82.0 2.9 6.3E-05 27.6 3.7 40 15-55 28-68 (156)
338 cd08239 THR_DH_like L-threonin 81.1 16 0.00034 27.9 8.3 92 13-116 161-263 (339)
339 COG0541 Ffh Signal recognition 81.0 11 0.00024 30.3 7.2 103 14-120 98-226 (451)
340 PF06016 Reovirus_L2: Reovirus 80.5 11 0.00024 34.3 7.8 104 14-121 821-932 (1289)
341 cd08232 idonate-5-DH L-idonate 79.9 23 0.0005 26.9 8.9 90 15-116 165-263 (339)
342 COG3129 Predicted SAM-dependen 79.7 0.77 1.7E-05 33.5 0.6 73 14-86 77-166 (292)
343 PRK06545 prephenate dehydrogen 75.8 15 0.00033 28.7 6.8 82 18-104 2-87 (359)
344 cd08255 2-desacetyl-2-hydroxye 75.6 28 0.0006 25.6 8.0 92 13-116 95-191 (277)
345 TIGR00675 dcm DNA-methyltransf 75.1 22 0.00047 27.3 7.4 59 19-80 1-66 (315)
346 PLN02740 Alcohol dehydrogenase 74.6 39 0.00084 26.4 9.3 93 13-117 196-302 (381)
347 PRK12491 pyrroline-5-carboxyla 74.1 18 0.00039 27.1 6.6 88 18-115 4-96 (272)
348 PRK03562 glutathione-regulated 73.9 35 0.00077 28.9 8.9 89 16-114 400-497 (621)
349 PRK13403 ketol-acid reductoiso 73.9 16 0.00035 28.3 6.2 88 14-113 14-104 (335)
350 PRK08507 prephenate dehydrogen 73.3 15 0.00033 27.4 6.1 84 18-113 2-88 (275)
351 PF10017 Methyltransf_33: Hist 73.2 9.2 0.0002 25.0 4.4 27 145-171 94-120 (127)
352 PF03807 F420_oxidored: NADP o 73.1 3 6.4E-05 25.4 1.9 65 40-114 26-92 (96)
353 PRK08306 dipicolinate synthase 73.1 16 0.00036 27.7 6.2 87 15-114 151-240 (296)
354 PRK05708 2-dehydropantoate 2-r 72.9 39 0.00085 25.7 9.0 89 17-115 3-104 (305)
355 PRK03659 glutathione-regulated 72.8 21 0.00046 30.1 7.4 88 17-115 401-498 (601)
356 PF12242 Eno-Rase_NADH_b: NAD( 72.8 14 0.0003 22.0 4.5 35 13-47 36-72 (78)
357 cd08234 threonine_DH_like L-th 72.4 39 0.00085 25.5 9.2 92 13-116 157-258 (334)
358 TIGR01470 cysG_Nterm siroheme 72.1 16 0.00036 26.0 5.8 64 15-80 8-76 (205)
359 PF01358 PARP_regulatory: Poly 71.0 8.1 0.00018 29.2 4.0 53 15-67 58-114 (294)
360 COG5379 BtaA S-adenosylmethion 70.8 8.7 0.00019 29.3 4.1 56 57-115 306-366 (414)
361 PRK11524 putative methyltransf 69.9 17 0.00037 27.4 5.7 20 92-114 60-79 (284)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 69.9 11 0.00023 25.6 4.3 85 19-114 2-101 (157)
363 KOG1098 Putative SAM-dependent 69.9 6.6 0.00014 33.0 3.6 53 12-68 41-94 (780)
364 PRK05476 S-adenosyl-L-homocyst 69.7 27 0.00058 28.1 6.9 86 15-115 211-299 (425)
365 COG1568 Predicted methyltransf 68.6 19 0.00042 27.3 5.5 86 15-104 152-249 (354)
366 PLN02827 Alcohol dehydrogenase 68.5 55 0.0012 25.6 9.3 92 13-116 191-296 (378)
367 PRK00066 ldh L-lactate dehydro 67.9 43 0.00093 25.7 7.6 101 14-115 4-122 (315)
368 TIGR00936 ahcY adenosylhomocys 67.9 38 0.00082 27.1 7.4 87 14-115 193-282 (406)
369 PRK08818 prephenate dehydrogen 67.2 46 0.00099 26.3 7.7 76 16-113 4-85 (370)
370 KOG1122 tRNA and rRNA cytosine 67.2 66 0.0014 26.0 9.7 109 13-124 239-380 (460)
371 KOG2078 tRNA modification enzy 67.1 1.6 3.5E-05 34.7 -0.3 54 13-68 247-309 (495)
372 cd08242 MDR_like Medium chain 66.8 52 0.0011 24.7 8.7 89 13-115 153-245 (319)
373 PRK10309 galactitol-1-phosphat 66.8 56 0.0012 25.0 9.2 93 13-117 158-262 (347)
374 COG0373 HemA Glutamyl-tRNA red 66.6 35 0.00076 27.4 6.9 97 15-121 177-278 (414)
375 PTZ00357 methyltransferase; Pr 66.3 13 0.00028 32.0 4.6 87 17-104 702-823 (1072)
376 PF14740 DUF4471: Domain of un 66.2 11 0.00024 28.5 4.0 79 58-165 200-286 (289)
377 PLN02586 probable cinnamyl alc 66.0 61 0.0013 25.2 11.8 91 14-116 182-279 (360)
378 PRK00045 hemA glutamyl-tRNA re 65.9 52 0.0011 26.4 7.9 67 14-81 180-250 (423)
379 COG0604 Qor NADPH:quinone redu 65.7 32 0.00069 26.5 6.5 93 13-118 140-244 (326)
380 PRK13699 putative methylase; P 65.5 40 0.00087 24.5 6.7 19 92-113 52-70 (227)
381 KOG0821 Predicted ribosomal RN 65.3 6.5 0.00014 28.7 2.5 53 15-69 50-109 (326)
382 PRK10669 putative cation:proto 65.1 74 0.0016 26.5 9.0 87 17-114 418-514 (558)
383 COG0773 MurC UDP-N-acetylmuram 65.1 54 0.0012 26.7 7.7 122 20-165 13-138 (459)
384 PRK05225 ketol-acid reductoiso 65.0 9.7 0.00021 30.9 3.6 84 14-114 34-130 (487)
385 COG1867 TRM1 N2,N2-dimethylgua 64.8 35 0.00076 26.9 6.4 93 16-117 53-156 (380)
386 cd08245 CAD Cinnamyl alcohol d 64.7 59 0.0013 24.5 8.7 92 13-116 160-257 (330)
387 PRK03369 murD UDP-N-acetylmura 64.6 61 0.0013 26.5 8.3 133 15-163 11-146 (488)
388 PRK06719 precorrin-2 dehydroge 64.0 43 0.00094 22.8 8.4 63 14-79 11-76 (157)
389 cd08298 CAD2 Cinnamyl alcohol 63.8 61 0.0013 24.4 8.9 90 13-116 165-257 (329)
390 TIGR01771 L-LDH-NAD L-lactate 62.7 31 0.00068 26.3 5.9 93 22-115 2-113 (299)
391 TIGR00518 alaDH alanine dehydr 62.5 16 0.00034 28.8 4.4 95 15-115 166-267 (370)
392 TIGR02825 B4_12hDH leukotriene 62.0 67 0.0015 24.3 8.4 91 13-116 136-238 (325)
393 COG0286 HsdM Type I restrictio 61.7 6.2 0.00014 32.3 2.1 42 14-55 185-231 (489)
394 PF02558 ApbA: Ketopantoate re 61.6 32 0.0007 22.7 5.4 87 19-115 1-101 (151)
395 PRK00421 murC UDP-N-acetylmura 61.0 88 0.0019 25.3 9.3 127 14-162 5-135 (461)
396 COG0031 CysK Cysteine synthase 60.8 60 0.0013 24.9 7.0 32 17-48 170-205 (300)
397 cd08231 MDR_TM0436_like Hypoth 60.5 76 0.0016 24.4 8.9 91 14-116 176-281 (361)
398 cd08261 Zn_ADH7 Alcohol dehydr 59.6 75 0.0016 24.1 8.9 92 13-116 157-259 (337)
399 COG1893 ApbA Ketopantoate redu 59.0 80 0.0017 24.2 7.7 87 18-115 2-101 (307)
400 PHA03108 poly(A) polymerase sm 59.0 19 0.00042 27.1 4.0 34 16-49 61-98 (300)
401 PF07101 DUF1363: Protein of u 58.9 3.7 8E-05 25.3 0.3 28 18-45 5-33 (124)
402 PRK06522 2-dehydropantoate 2-r 58.8 55 0.0012 24.5 6.7 86 18-114 2-99 (304)
403 PLN02178 cinnamyl-alcohol dehy 58.6 87 0.0019 24.5 11.6 92 14-117 177-275 (375)
404 cd05291 HicDH_like L-2-hydroxy 58.5 80 0.0017 24.0 8.0 97 18-115 2-117 (306)
405 PF11899 DUF3419: Protein of u 58.0 14 0.00031 29.2 3.4 39 7-49 29-67 (380)
406 PLN02494 adenosylhomocysteinas 57.9 35 0.00076 27.9 5.6 89 14-116 252-342 (477)
407 PRK14806 bifunctional cyclohex 57.4 53 0.0012 28.4 7.1 83 17-104 4-89 (735)
408 PF07279 DUF1442: Protein of u 57.1 73 0.0016 23.1 8.4 95 15-118 41-151 (218)
409 KOG0780 Signal recognition par 56.8 66 0.0014 25.8 6.7 104 13-119 98-226 (483)
410 PRK05562 precorrin-2 dehydroge 56.7 75 0.0016 23.2 8.4 65 14-80 23-92 (223)
411 cd08300 alcohol_DH_class_III c 56.6 92 0.002 24.2 9.3 93 13-117 184-290 (368)
412 PRK09496 trkA potassium transp 56.4 84 0.0018 25.1 7.7 82 16-104 231-323 (453)
413 TIGR02818 adh_III_F_hyde S-(hy 56.3 94 0.002 24.2 8.9 93 13-117 183-289 (368)
414 KOG0023 Alcohol dehydrogenase, 55.9 97 0.0021 24.2 8.2 95 13-118 179-282 (360)
415 PRK07679 pyrroline-5-carboxyla 55.8 68 0.0015 24.0 6.7 88 17-114 4-97 (279)
416 cd05285 sorbitol_DH Sorbitol d 55.8 90 0.002 23.8 8.9 91 13-115 160-265 (343)
417 PF05050 Methyltransf_21: Meth 55.6 18 0.00038 24.2 3.3 28 21-48 1-32 (167)
418 PRK03806 murD UDP-N-acetylmura 55.6 1.1E+02 0.0023 24.6 8.9 125 16-164 6-135 (438)
419 cd08285 NADP_ADH NADP(H)-depen 55.6 92 0.002 23.8 9.5 93 13-117 164-268 (351)
420 KOG0022 Alcohol dehydrogenase, 55.5 98 0.0021 24.2 8.2 96 13-119 190-298 (375)
421 PRK14573 bifunctional D-alanyl 55.4 97 0.0021 27.3 8.3 123 18-162 6-132 (809)
422 PRK04663 murD UDP-N-acetylmura 55.0 1.1E+02 0.0024 24.6 9.9 126 15-163 6-137 (438)
423 KOG2811 Uncharacterized conser 55.0 19 0.00041 28.3 3.6 31 17-47 184-217 (420)
424 PLN02545 3-hydroxybutyryl-CoA 54.5 91 0.002 23.5 7.4 90 16-116 4-119 (295)
425 PF03721 UDPG_MGDP_dh_N: UDP-g 54.4 51 0.0011 23.1 5.5 97 18-121 2-125 (185)
426 PRK08655 prephenate dehydrogen 54.4 50 0.0011 26.7 6.1 78 18-104 2-84 (437)
427 cd01842 SGNH_hydrolase_like_5 54.0 31 0.00067 24.2 4.2 43 71-116 48-100 (183)
428 PRK07066 3-hydroxybutyryl-CoA 53.5 1E+02 0.0022 23.8 10.0 92 15-116 6-119 (321)
429 cd05278 FDH_like Formaldehyde 53.2 98 0.0021 23.5 9.1 92 13-115 165-267 (347)
430 KOG1209 1-Acyl dihydroxyaceton 52.3 32 0.00068 25.2 4.1 54 13-67 4-61 (289)
431 PRK08229 2-dehydropantoate 2-r 52.0 96 0.0021 23.8 7.2 79 18-104 4-99 (341)
432 PRK06718 precorrin-2 dehydroge 51.9 85 0.0018 22.3 8.4 64 15-80 9-77 (202)
433 PRK09260 3-hydroxybutyryl-CoA 51.8 1E+02 0.0022 23.2 8.5 90 17-116 2-117 (288)
434 PRK09496 trkA potassium transp 51.8 1.2E+02 0.0027 24.2 9.6 80 18-104 2-91 (453)
435 PLN03154 putative allyl alcoho 50.9 1.1E+02 0.0025 23.5 8.2 92 13-117 156-260 (348)
436 PF07991 IlvN: Acetohydroxy ac 50.4 58 0.0013 22.5 5.0 88 15-114 3-93 (165)
437 PF03698 UPF0180: Uncharacteri 49.9 36 0.00079 20.4 3.5 23 148-170 9-31 (80)
438 PRK06249 2-dehydropantoate 2-r 49.8 1.1E+02 0.0025 23.2 8.1 89 16-114 5-105 (313)
439 KOG2013 SMT3/SUMO-activating c 49.7 39 0.00085 27.7 4.6 32 15-47 11-44 (603)
440 PRK07574 formate dehydrogenase 49.6 1E+02 0.0022 24.5 7.0 83 15-104 191-276 (385)
441 PRK00094 gpsA NAD(P)H-dependen 49.4 1E+02 0.0022 23.3 6.9 79 18-104 3-97 (325)
442 PF08002 DUF1697: Protein of u 49.0 30 0.00064 23.0 3.4 27 145-171 17-43 (137)
443 cd08296 CAD_like Cinnamyl alco 48.9 1.2E+02 0.0025 23.1 9.4 93 13-117 161-261 (333)
444 TIGR00872 gnd_rel 6-phosphoglu 48.8 42 0.00092 25.4 4.7 83 19-114 3-91 (298)
445 COG0677 WecC UDP-N-acetyl-D-ma 48.7 1.2E+02 0.0027 24.4 7.1 30 91-124 107-136 (436)
446 PLN03139 formate dehydrogenase 48.6 88 0.0019 24.9 6.5 83 15-104 198-283 (386)
447 PF07090 DUF1355: Protein of u 48.0 21 0.00045 25.0 2.7 43 70-115 64-108 (177)
448 PRK11199 tyrA bifunctional cho 47.8 82 0.0018 24.8 6.3 73 15-113 97-172 (374)
449 cd05290 LDH_3 A subgroup of L- 47.7 1.3E+02 0.0027 23.1 7.6 96 19-115 2-119 (307)
450 PTZ00082 L-lactate dehydrogena 47.4 1.3E+02 0.0028 23.2 7.5 65 16-81 6-82 (321)
451 PRK00141 murD UDP-N-acetylmura 47.3 1.4E+02 0.0031 24.3 7.7 135 15-164 14-151 (473)
452 TIGR02853 spore_dpaA dipicolin 46.9 64 0.0014 24.4 5.3 65 15-81 150-217 (287)
453 PLN02712 arogenate dehydrogena 46.9 1.1E+02 0.0025 26.3 7.3 80 16-104 52-135 (667)
454 KOG2666 UDP-glucose/GDP-mannos 46.8 29 0.00062 26.9 3.4 64 17-80 2-85 (481)
455 cd08294 leukotriene_B4_DH_like 46.7 1.2E+02 0.0027 22.7 9.1 91 13-116 141-242 (329)
456 PF01262 AlaDh_PNT_C: Alanine 46.6 10 0.00022 26.0 1.0 33 15-48 19-52 (168)
457 TIGR03439 methyl_EasF probable 46.6 32 0.00069 26.6 3.7 27 145-171 286-312 (319)
458 COG4017 Uncharacterized protei 46.3 91 0.002 22.4 5.5 86 14-116 43-130 (254)
459 PRK07680 late competence prote 45.3 96 0.0021 23.0 6.1 80 19-104 3-88 (273)
460 PTZ00075 Adenosylhomocysteinas 45.2 1E+02 0.0022 25.4 6.4 86 14-114 252-340 (476)
461 PRK05479 ketol-acid reductoiso 45.1 85 0.0018 24.4 5.8 80 15-104 16-100 (330)
462 KOG1253 tRNA methyltransferase 44.9 18 0.00038 29.6 2.1 95 13-116 107-217 (525)
463 PRK06928 pyrroline-5-carboxyla 44.7 1.1E+02 0.0023 22.9 6.3 87 18-114 3-96 (277)
464 KOG2671 Putative RNA methylase 44.5 23 0.00049 27.8 2.5 99 13-116 206-355 (421)
465 TIGR03201 dearomat_had 6-hydro 44.4 1.4E+02 0.0031 22.9 11.9 93 13-117 164-274 (349)
466 PRK08293 3-hydroxybutyryl-CoA 44.1 1.2E+02 0.0027 22.7 6.5 88 17-114 4-118 (287)
467 COG1062 AdhC Zn-dependent alco 43.7 1.6E+02 0.0035 23.2 12.6 98 13-121 183-291 (366)
468 PRK03094 hypothetical protein; 43.7 29 0.00063 20.8 2.4 21 148-168 9-29 (80)
469 KOG1269 SAM-dependent methyltr 43.1 89 0.0019 24.7 5.7 101 15-123 180-321 (364)
470 PLN00203 glutamyl-tRNA reducta 43.1 1.8E+02 0.0038 24.3 7.6 101 16-121 266-373 (519)
471 COG4121 Uncharacterized conser 42.8 1.4E+02 0.003 22.3 7.6 23 15-37 58-80 (252)
472 PRK06035 3-hydroxyacyl-CoA deh 42.8 1.4E+02 0.0029 22.5 6.6 88 17-115 4-120 (291)
473 PRK12480 D-lactate dehydrogena 42.2 1.6E+02 0.0035 22.8 7.4 85 15-113 145-231 (330)
474 PF03446 NAD_binding_2: NAD bi 42.2 37 0.0008 23.1 3.2 82 19-113 4-91 (163)
475 PRK05808 3-hydroxybutyryl-CoA 41.8 1.4E+02 0.0031 22.2 6.6 89 18-117 5-119 (282)
476 COG2085 Predicted dinucleotide 41.6 92 0.002 22.5 5.1 38 71-118 58-95 (211)
477 PLN02688 pyrroline-5-carboxyla 41.5 1.2E+02 0.0026 22.3 6.1 87 18-115 2-94 (266)
478 PF07927 YcfA: YcfA-like prote 41.3 36 0.00078 18.3 2.5 17 150-166 2-18 (56)
479 PRK10637 cysG siroheme synthas 40.8 2E+02 0.0043 23.4 7.9 64 14-79 10-78 (457)
480 cd05293 LDH_1 A subgroup of L- 40.5 1.7E+02 0.0036 22.5 8.4 100 15-115 2-120 (312)
481 PF03435 Saccharop_dh: Sacchar 40.2 1.1E+02 0.0024 24.0 6.0 62 19-80 1-74 (386)
482 PRK03803 murD UDP-N-acetylmura 40.1 2E+02 0.0043 23.2 10.4 129 13-163 3-137 (448)
483 KOG2782 Putative SAM dependent 39.5 15 0.00033 26.8 0.9 45 2-48 32-76 (303)
484 PF14314 Methyltrans_Mon: Viru 39.3 32 0.0007 29.4 2.9 38 3-43 313-350 (675)
485 PLN02819 lysine-ketoglutarate 38.7 1.4E+02 0.0029 27.4 6.7 66 15-80 568-655 (1042)
486 cd03143 A4_beta-galactosidase_ 38.6 98 0.0021 20.6 4.8 36 70-113 50-85 (154)
487 PF06283 ThuA: Trehalose utili 38.4 67 0.0015 22.9 4.2 38 71-115 50-88 (217)
488 PRK14106 murD UDP-N-acetylmura 38.3 2.1E+02 0.0045 23.0 7.5 125 16-163 5-137 (450)
489 PLN02256 arogenate dehydrogena 38.2 1.6E+02 0.0035 22.5 6.3 81 15-104 35-119 (304)
490 PRK09273 hypothetical protein; 37.7 28 0.00061 25.1 2.0 20 23-42 70-89 (211)
491 KOG1252 Cystathionine beta-syn 37.5 72 0.0016 24.9 4.3 42 14-55 210-257 (362)
492 TIGR01087 murD UDP-N-acetylmur 37.3 2.1E+02 0.0047 22.8 9.2 121 20-162 3-130 (433)
493 cd00300 LDH_like L-lactate deh 37.2 1.8E+02 0.004 22.0 7.5 93 22-115 4-115 (300)
494 PHA03297 envelope glycoprotein 37.2 10 0.00022 25.6 -0.2 22 10-31 34-55 (185)
495 TIGR01759 MalateDH-SF1 malate 36.9 2E+02 0.0043 22.3 7.6 100 15-115 2-129 (323)
496 PF01870 Hjc: Archaeal hollida 36.5 83 0.0018 19.2 3.7 29 149-178 3-31 (88)
497 PRK14873 primosome assembly pr 36.5 2.9E+02 0.0062 24.0 9.5 96 17-114 431-535 (665)
498 COG0569 TrkA K+ transport syst 36.5 1.7E+02 0.0036 21.3 6.5 61 18-80 2-73 (225)
499 PRK10537 voltage-gated potassi 36.3 2.2E+02 0.0049 22.7 8.1 87 17-115 241-336 (393)
500 PRK11908 NAD-dependent epimera 36.1 1.5E+02 0.0032 22.7 6.0 61 18-79 3-74 (347)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.90 E-value=3.9e-23 Score=150.93 Aligned_cols=148 Identities=36% Similarity=0.779 Sum_probs=125.1
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
+...++ +.+..+|+|||+|+|.++..+++.+|+++++.+|++++++.+++..|+++..+|++++.|.+|+++..+++|
T Consensus 92 ~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vLh 169 (241)
T PF00891_consen 92 LLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVLH 169 (241)
T ss_dssp HHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSGG
T ss_pred hhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccceeeehhhh
Confidence 445566 778889999999999999999999999999999999988888888999999999998888899999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCC--cEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 85 FFDDEDCLKLLKKCREAIASNGER--GKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
++++++...+|++++++|+| | |+++|.|...++........+.....++.++...+++.+|.++|.++++
T Consensus 170 ~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK 241 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 99999999999999999999 8 9999999998887766433333356777777766789999999999874
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.87 E-value=2.9e-21 Score=145.64 Aligned_cols=156 Identities=24% Similarity=0.463 Sum_probs=117.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~ 76 (180)
+++.+. +++..+|||||||+|.++..+++.+|+.+++++|.+.+++.+++ ..++++..+|+.+ ..|.+|+
T Consensus 141 l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~ 218 (306)
T TIGR02716 141 LLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADA 218 (306)
T ss_pred HHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCE
Confidence 444555 67788999999999999999999999999999999777776653 4679999999975 5667899
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh-ccceeeEeecCCcccCHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL-LFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
|+++.++|+++++...+++++++++|+| ||++++.|....+..... +..... .....+. .......+.++|.++
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMP-FSVLGFKEQARYKEI 293 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHcccc-cccccCCCHHHHHHH
Confidence 9999999999888777899999999999 999999998765443221 111111 1111101 111123457999999
Q ss_pred HHHcCCeEEEEe
Q 030291 156 FVNAGFTHYKIA 167 (180)
Q Consensus 156 l~~aGf~~~~~~ 167 (180)
|+++||+.+++.
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988754
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.85 E-value=9.4e-22 Score=142.11 Aligned_cols=161 Identities=19% Similarity=0.310 Sum_probs=79.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cCC--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FIP--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~~--~~D~v~~~~ 81 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+|+ |++.+++ ..+++++++|..+ +.+ +||+|++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4677899999999999999998874 567999999976 9999975 3589999999955 333 599999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh--ccceeeEee------------cCCccc
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL--LFDIFMNFN------------VGGKER 147 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~ 147 (180)
.+++++|.. +.++++.++||| ||.+++.|+..+....-........ ......... .-..+.
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~ 199 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP 199 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHHHHH-------------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccc
Confidence 999999988 779999999999 9999999998776532211111100 000000000 001345
Q ss_pred CHHHHHHHHHHcCCeEEEEeec-CCceeEEEE
Q 030291 148 TEQEWGSLFVNAGFTHYKIAPI-FGIKSLIEV 178 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~~ 178 (180)
+.+++.++++++||+.++.... .|..+++.+
T Consensus 200 ~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g 231 (233)
T PF01209_consen 200 SPEELKELLEEAGFKNVEYRPLTFGIVTIHVG 231 (233)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 7899999999999998877655 455555443
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.85 E-value=2.6e-20 Score=133.64 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=118.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cCC--CccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FIP--PSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~~--~~D~v~~~~~ 82 (180)
.+++.+|||||||||..+..+++..+..+++++|+++ |+..+++ ..+++|+.+|+.+ +++ +||++.+++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 3478999999999999999999998889999999976 9999985 2339999999955 443 6999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh-hhh--ccceee-EeecC-----------Cccc
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE-SKL--LFDIFM-NFNVG-----------GKER 147 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~-~~~~~-----------~~~~ 147 (180)
|++++|.+ ++|++++|+||| ||.+++.+...+....-..... ... ...... ....+ .++.
T Consensus 129 lrnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 99999988 779999999999 9999999988765533211111 100 010111 11111 1345
Q ss_pred CHHHHHHHHHHcCCeEEEEeec-CCceeEEE
Q 030291 148 TEQEWGSLFVNAGFTHYKIAPI-FGIKSLIE 177 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~ 177 (180)
+.+++.+.++++||+.+..... .|...+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 7899999999999998874444 44444443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.85 E-value=1.8e-20 Score=138.06 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=116.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcc-cCC--CccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-FIP--PSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-~~~--~~D~v~ 78 (180)
.+++.+|||+|||+|.++..+++.. +..+++++|+++ |++.+++ ..++++.++|+.+ +.+ +||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4678899999999999999888874 567899999976 9888753 2478999999855 333 599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhc-----c-ceeeEee-------cCCc
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL-----F-DIFMNFN-------VGGK 145 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~-------~~~~ 145 (180)
++.++|+++++. ++++++.++||| ||.+++.++..+.......+...... . ....... .-.+
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999999887 789999999999 99999999876554321111000000 0 0000000 0024
Q ss_pred ccCHHHHHHHHHHcCCeEEEEeecCC-ceeEEEE
Q 030291 146 ERTEQEWGSLFVNAGFTHYKIAPIFG-IKSLIEV 178 (180)
Q Consensus 146 ~~~~~~~~~~l~~aGf~~~~~~~~~~-~~~~~~~ 178 (180)
+.+.+++.++++++||+.++.....+ ...+..+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 57999999999999999988877654 4444433
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.85 E-value=2.5e-20 Score=137.22 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=109.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc--CCCccEEEec
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF--IPPSDAFFFK 80 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~--~~~~D~v~~~ 80 (180)
.+++.+. ..++.+|||||||+|.++..+++.+|+.+++++|+++ |++.+++ .++++.++|+.+. .+.||+|+++
T Consensus 20 ~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 20 DLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence 3555665 6678999999999999999999998889999999976 8888865 4688999998542 3469999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh---hccce-eeE-eecCCcccCHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK---LLFDI-FMN-FNVGGKERTEQEWGSL 155 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~-~~~~~~~~~~~~~~~~ 155 (180)
.++||++++. .++++++++|+| ||.+++.................. .+... ... ...+....+.+++.++
T Consensus 97 ~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 97 AALQWVPEHA--DLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred hhhhhCCCHH--HHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 9999999887 789999999999 898888643211111111011100 00000 000 0112245689999999
Q ss_pred HHHcCCeEEE
Q 030291 156 FVNAGFTHYK 165 (180)
Q Consensus 156 l~~aGf~~~~ 165 (180)
|+++||++..
T Consensus 172 l~~aGf~v~~ 181 (255)
T PRK14103 172 LTDAGCKVDA 181 (255)
T ss_pred HHhCCCeEEE
Confidence 9999998543
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.84 E-value=9.5e-20 Score=134.42 Aligned_cols=154 Identities=21% Similarity=0.318 Sum_probs=115.2
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC--Ccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP--PSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~--~~D 75 (180)
.+++.+. ++++.+|||||||+|..+..+++.+ +++++++|+++ +++.+++ ..++.+.++|+.+ +.+ .||
T Consensus 43 ~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 43 KILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 4555666 7888999999999999999888765 67999999966 8777764 3579999999865 333 699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|++..+++|++..+...++++++++|+| ||.+++.+........... ........ ......+.+++.++
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~ 189 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWDE--EFKAYIKK-----RKYTLIPIQEYGDL 189 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcHH--HHHHHHHh-----cCCCCCCHHHHHHH
Confidence 99999999898855556899999999999 9999999876543211110 11111100 11245688999999
Q ss_pred HHHcCCeEEEEeecC
Q 030291 156 FVNAGFTHYKIAPIF 170 (180)
Q Consensus 156 l~~aGf~~~~~~~~~ 170 (180)
++++||+.++..+..
T Consensus 190 l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 190 IKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHCCCCeeeEEeCc
Confidence 999999999887654
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.84 E-value=4.7e-20 Score=140.64 Aligned_cols=150 Identities=16% Similarity=0.230 Sum_probs=108.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
.++.+|||||||+|.++..+++.+ +++++++|+++ +++.+++ ..++++.++|+.+ +. ..||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 78999999976 8877653 3579999999865 32 36999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc-hhhhh-hhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD-RELTE-SKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
++|+++.. .+++++.++||| ||.+++.++........ ..+.. .....+............+.+++.++++++|
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 99999887 789999999999 99999988653221110 00000 0000000000001113458899999999999
Q ss_pred CeEEEEeec
Q 030291 161 FTHYKIAPI 169 (180)
Q Consensus 161 f~~~~~~~~ 169 (180)
|+.+++.+.
T Consensus 271 f~~v~~~d~ 279 (340)
T PLN02244 271 LQDIKTEDW 279 (340)
T ss_pred CCeeEeeeC
Confidence 999988765
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.83 E-value=5.9e-20 Score=133.38 Aligned_cols=166 Identities=17% Similarity=0.228 Sum_probs=120.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~ 73 (180)
+++.+. .+++.+|||+|||+|.++..+++.. +..+++++|+++ +++.+++ ..++++.++|..+ +. ..
T Consensus 37 ~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 37 TMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 445555 6678899999999999999998875 677999999965 8777653 3578999998855 22 36
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhc-c----cee-----------
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL-F----DIF----------- 137 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~----------- 137 (180)
||+|++..+++++++.. ++++++.++|+| ||.+++.+...+.... +...... + ...
T Consensus 115 fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYM--QVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred ccEEEEecccccCCCHH--HHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 99999999999999887 789999999999 9999988765433221 1111000 0 000
Q ss_pred e-EeecCCcccCHHHHHHHHHHcCCeEEEEeecC-CceeEEEEeC
Q 030291 138 M-NFNVGGKERTEQEWGSLFVNAGFTHYKIAPIF-GIKSLIEVYP 180 (180)
Q Consensus 138 ~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~-~~~~~~~~~~ 180 (180)
. .......+.+.+++.++++++||+++++.... +..+.+.++|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0 00011245688999999999999999888775 6777777665
No 10
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.83 E-value=1.5e-20 Score=137.10 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=112.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~~ 82 (180)
++..+|||||||+|..+..+++.+ |+.+++++|+++ |++.+++ ..++++.++|+.+ +.+.+|+|+++.+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 567899999999999999998874 689999999965 9888864 2478999999965 4457999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh-hhhhhhcc-ceeeEe-----------ecCCcccCH
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE-LTESKLLF-DIFMNF-----------NVGGKERTE 149 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~-----------~~~~~~~~~ 149 (180)
+||+++.+...+++++.++|+| ||.+++.+........... +.+....+ ...... .......+.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999887777999999999999 9999999876544322111 11110000 000000 011245799
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
+++.++++++||+.++....
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred HHHHHHHHHcCCchHHHHHH
Confidence 99999999999997665433
No 11
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.83 E-value=4.7e-20 Score=136.06 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=108.9
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~ 74 (180)
+.+++++. ++++.+|||||||.|.++..+++.+ +++++++++|+ ..+.+++ ..++++...|+.+..+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 45677888 9999999999999999999999998 89999999976 6666643 467999999997655589
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|.|++..+++|+.......+++++.++|+| ||.+++.............-........ .....++...+.+++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~i~--kyiFPgg~lps~~~~~~ 203 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDFIR--KYIFPGGYLPSLSEILR 203 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHHHH--HHTSTTS---BHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceEEE--EeeCCCCCCCCHHHHHH
Confidence 999999999999888778999999999999 8998887766554321110000000111 11234566778899999
Q ss_pred HHHHcCCeEEEEeecC
Q 030291 155 LFVNAGFTHYKIAPIF 170 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~ 170 (180)
.++++||++.+....+
T Consensus 204 ~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 204 AAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHTT-EEEEEEE-H
T ss_pred HHhcCCEEEEEEEEcC
Confidence 9999999998887653
No 12
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=4.9e-20 Score=134.49 Aligned_cols=157 Identities=20% Similarity=0.261 Sum_probs=127.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPS 74 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~ 74 (180)
+.+++.+. ++++.++||||||.|.++..+++.+ +++++|+++|+ +...+++ ..++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 45667777 8999999999999999999999999 89999999976 7777764 458999999997766679
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|-|++..+++|+.......+++++.+.|+| ||.+++.....+...... ...+. ..+...++...+..++..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i--~~yiFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFI--DKYIFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHH--HHhCCCCCcCCCHHHHHH
Confidence 999999999999998888999999999999 999999988776654310 00011 122335667778899999
Q ss_pred HHHHcCCeEEEEeecCC
Q 030291 155 LFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~~~ 171 (180)
..+++||.+.+....+.
T Consensus 210 ~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 210 LASEAGFVVLDVESLRP 226 (283)
T ss_pred HHHhcCcEEehHhhhcH
Confidence 99999999888766543
No 13
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.82 E-value=7.4e-20 Score=135.77 Aligned_cols=165 Identities=33% Similarity=0.565 Sum_probs=138.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCC-CCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQT-DNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
+......+|+|+|.|..+..++..+|....+-+|++..++.+... +.++.+-+|+++..|.-|+|++.+++||+.|.++
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedc 254 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDC 254 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHH
Confidence 456788999999999999999999999888888888888888775 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEeeeCC-CCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDIVIDE-KEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.++|++|+..|+| +|++++.|.+.+. ...+..........+..+... .+++.++.++++.++.++||.+..+.-.
T Consensus 255 vkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 255 VKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence 9999999999999 9999999997765 322211122333344433332 4478899999999999999999999999
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
....++|+++|
T Consensus 332 ~~~~~~Ie~~k 342 (342)
T KOG3178|consen 332 AYSYSVIEFHK 342 (342)
T ss_pred cCccchheeCC
Confidence 99999998875
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=8.7e-20 Score=133.63 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=111.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH--CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA--FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~--~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~ 81 (180)
.+++.+|||||||+|..+..+++. .|+.+++++|+++ |++.+++ ..+++++++|+.+ +.+.+|+|+++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 356789999999999999988874 5789999999966 9998875 2479999999865 445799999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh-hhhhhhcc-ceeeEee-----------cCCcccC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE-LTESKLLF-DIFMNFN-----------VGGKERT 148 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-----------~~~~~~~ 148 (180)
++||+++.+...++++++++|+| ||.+++.+........... +...+..+ ....++. ......+
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 99999987777999999999999 9999999866544332221 11111000 0001100 0113458
Q ss_pred HHHHHHHHHHcCCeEEEEe
Q 030291 149 EQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~ 167 (180)
.++..++|+++||+.++..
T Consensus 211 ~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 211 VETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHHcCchhHHHH
Confidence 8999999999999876554
No 15
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.82 E-value=6.2e-20 Score=125.89 Aligned_cols=137 Identities=19% Similarity=0.216 Sum_probs=97.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcccCCCccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~~~~~~D~v~~~~~l~~~~~ 88 (180)
..+..+|||||||.|.++..+.+. +.+++++|+++ +++. . +...... +...+...||+|++..+++|+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-~---~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-R---NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-T---TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-h---hhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 467889999999999999999776 44899999965 7666 1 2222222 22123457999999999999998
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
+. ++|+++.++|+| ||.+++.++........ ....+...... ..+...++.++|.++++++||++++
T Consensus 94 ~~--~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PE--EFLKELSRLLKP---GGYLVISDPNRDDPSPR--SFLKWRYDRPY---GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHCEEE---EEEEEEEEEBTTSHHHH--HHHHCCGTCHH---TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HH--HHHHHHHHhcCC---CCEEEEEEcCCcchhhh--HHHhcCCcCcc---CceeccCCHHHHHHHHHHCCCEEEE
Confidence 77 889999999999 89999988765321100 00111111100 0234678999999999999999886
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=1.9e-19 Score=135.54 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=105.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-c--CCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-F--IPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~--~~~~D~v~~~~~l 83 (180)
++.+|||||||+|.++..+++. +.+++++|++. +++.++. ..++++.++|+.+ + ...||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988864 77899999965 8888763 2478999998744 2 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccce-eeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDI-FMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+|++++. .+++++.++||| ||.+++.+.+................... ....+...++++++++.++++++||+
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9999998 889999999999 99999987653211000000000000000 00011112468999999999999999
Q ss_pred EEEEe
Q 030291 163 HYKIA 167 (180)
Q Consensus 163 ~~~~~ 167 (180)
++++.
T Consensus 284 i~~~~ 288 (322)
T PLN02396 284 VKEMA 288 (322)
T ss_pred EEEEe
Confidence 98884
No 17
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.80 E-value=1.3e-18 Score=130.45 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=104.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-------CCCCeeEEecCCcc--cCCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-------QTDNLKYIEGDMFQ--FIPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-------~~~~~~~~~~d~~~--~~~~~D~v~~~~~ 82 (180)
..++++|||||||+|.++..++...+ ..++++|++. |+.+++ ...++.+...++.+ ....||+|++.++
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gv 197 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGV 197 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcch
Confidence 45578999999999999998888754 3799999976 765432 14577788887743 2236999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
++|.+++. .+|++++++|+| ||.+++.+.......... +........ ........+.+++.+.++++||+
T Consensus 198 L~H~~dp~--~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~k----~~nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 198 LYHRKSPL--EHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYAK----MKNVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred hhccCCHH--HHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHHh----ccccccCCCHHHHHHHHHHCCCe
Confidence 99999987 789999999999 999999876554332111 000000000 00111345889999999999999
Q ss_pred EEEEeec
Q 030291 163 HYKIAPI 169 (180)
Q Consensus 163 ~~~~~~~ 169 (180)
.+++...
T Consensus 268 ~V~i~~~ 274 (314)
T TIGR00452 268 NFRILDV 274 (314)
T ss_pred EEEEEec
Confidence 9987754
No 18
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.80 E-value=1.5e-18 Score=138.14 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=114.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cCC--Cc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FIP--PS 74 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~~--~~ 74 (180)
.+++.+. ++++.+|||||||+|..+..+++.. +++++++|+++ ++..+++ ..++++.++|+.+ +.+ .|
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3455555 6678899999999999999888876 77999999976 8877754 3578999999865 333 59
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|++..+++|++++. .++++++++|+| ||.+++.+............ ..... ..+....+.+++.+
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~~~-----~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSPEF---AEYIK-----QRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcHHH---HHHHH-----hcCCCCCCHHHHHH
Confidence 9999999999999987 789999999999 99999988765432221111 11111 11235678899999
Q ss_pred HHHHcCCeEEEEeec
Q 030291 155 LFVNAGFTHYKIAPI 169 (180)
Q Consensus 155 ~l~~aGf~~~~~~~~ 169 (180)
+++++||+++.+.+.
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999876543
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.80 E-value=2.7e-19 Score=131.66 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=108.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~~ 81 (180)
..+.+|||+|||+|.++..+++. +.+++++|+++ |++.+++ ..+++++++|+.+. ...||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 56899999965 8888864 25788999988541 23699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh-hh---hccc-eeeEeecCCcccCHHHHHHHH
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE-SK---LLFD-IFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~~~~~~~~~~~~~~~~~~~~l 156 (180)
+++|++++. .+++++.++|+| ||.+++...+.........+.. .. .... ............+++++.+++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 999999887 789999999999 9999887654322100000000 00 0000 000011112346889999999
Q ss_pred HHcCCeEEEEeecCCce
Q 030291 157 VNAGFTHYKIAPIFGIK 173 (180)
Q Consensus 157 ~~aGf~~~~~~~~~~~~ 173 (180)
+++||++++..-...++
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998776554443
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.79 E-value=1.9e-18 Score=130.63 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=105.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-------CCCCeeEEecCCcc-c-CCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-------QTDNLKYIEGDMFQ-F-IPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-------~~~~~~~~~~d~~~-~-~~~~D~v~~~~~l 83 (180)
..+.+|||||||+|.++..+++..+. +++++|++. ++.+++ ...++.+..+|+.+ + ...||+|++..++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 35689999999999999999998644 699999976 665432 13579999998844 2 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
||..++. .+++++++.|+| ||.+++.+.......... +........ ........+.+++.++++++||+.
T Consensus 200 ~H~~dp~--~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~----~~~~~~lps~~~l~~~L~~aGF~~ 269 (322)
T PRK15068 200 YHRRSPL--DHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK----MRNVYFIPSVPALKNWLERAGFKD 269 (322)
T ss_pred hccCCHH--HHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc----CccceeCCCHHHHHHHHHHcCCce
Confidence 9999887 789999999999 999988766544332211 000000000 000112358899999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
+++...
T Consensus 270 i~~~~~ 275 (322)
T PRK15068 270 VRIVDV 275 (322)
T ss_pred EEEEeC
Confidence 988755
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.78 E-value=4.6e-18 Score=122.89 Aligned_cols=136 Identities=14% Similarity=0.190 Sum_probs=105.9
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC-CCccEEEeccccccC
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI-PPSDAFFFKTVFHFF 86 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~-~~~D~v~~~~~l~~~ 86 (180)
++|||||||+|..+..+++.+++++++++|+++ ++..+++ ..++++...|+.. +. +.||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 479999999999999999998888999999966 7776654 4578999999844 22 369999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
++.. .+++++.++|+| ||.+++.+......... . .........+.++|.++++++||++++.
T Consensus 81 ~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----------~---~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDKM--DLFSNISRHLKD---GGHLVLADFIANLLSAI----------E---HEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCHH--HHHHHHHHHcCC---CCEEEEEEcccccCccc----------c---ccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 8876 889999999999 99999988643221100 0 0001112468899999999999999988
Q ss_pred eecC
Q 030291 167 APIF 170 (180)
Q Consensus 167 ~~~~ 170 (180)
....
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7653
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.78 E-value=5e-18 Score=128.30 Aligned_cols=141 Identities=25% Similarity=0.295 Sum_probs=108.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~ 86 (180)
++..+|||||||+|.++..+++..+..+++++|.++ |++.+++ ..++++..+|+.+ +. ..||+|+++.+++|+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 356799999999999999998887778999999966 8888765 3578889999854 22 359999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
++.. .+++++.++|+| ||.+++.+...+..+.. . ...+.+. ...+.+++.++++++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~----r--~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLS----R--FFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHH----H--Hhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 9987 679999999999 99998876543221100 0 0111111 2357899999999999999988
Q ss_pred eecCC
Q 030291 167 APIFG 171 (180)
Q Consensus 167 ~~~~~ 171 (180)
.+..+
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 77644
No 23
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=3e-19 Score=126.36 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=106.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc--cC-CCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ--FI-PPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~--~~-~~~D~v~~~~~l~~ 85 (180)
.+.+|||||||.|.++..+++. +++|+++|+++ +++.|+. .-.+++.+....+ .. .+||+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 6789999999999999999999 68899999976 8888885 2334466665543 22 47999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcc-ceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLF-DIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+++++ .+++.|.+++|| ||.+++++.+.........+....... .+...++...++..++|+...+.++|+.+.
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 99999 789999999999 999999888744332211111100011 111122222356788999999999999887
Q ss_pred EEe
Q 030291 165 KIA 167 (180)
Q Consensus 165 ~~~ 167 (180)
+..
T Consensus 212 ~~~ 214 (243)
T COG2227 212 DRK 214 (243)
T ss_pred eec
Confidence 764
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=3.2e-18 Score=110.65 Aligned_cols=98 Identities=22% Similarity=0.512 Sum_probs=81.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCC-cc--cCCCccEEEecc-c
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDM-FQ--FIPPSDAFFFKT-V 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~-~~--~~~~~D~v~~~~-~ 82 (180)
++.+|||||||+|.++..+++.+++.+++++|+++ +++.+++ ..+++++++|+ .. ..+.||+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 46789999999999999999988899999999965 8888864 58999999999 32 344699999999 5
Q ss_pred cccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDD-EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++++.+ ++..++++++++.|+| ||.+++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 664443 4566899999999999 88888764
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=7.6e-18 Score=124.23 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=107.1
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--CCCccEEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--IPPSDAFFF 79 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~~~~D~v~~ 79 (180)
.++..+. ..++.+|||||||+|.++..+++.+|+.+++++|+++ +++.+++ ..++++..+|+.+. .+.||+|++
T Consensus 22 ~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 22 DLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFA 99 (258)
T ss_pred HHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEE
Confidence 4555555 6778999999999999999999998889999999976 8888876 56788999998542 236999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh---hccceeeEee-cCCcccCHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK---LLFDIFMNFN-VGGKERTEQEWGSL 155 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 155 (180)
+.++||+++.. .+++++.++|+| ||.+++.............+.+.. .+........ ......+..++.+.
T Consensus 100 ~~~l~~~~d~~--~~l~~~~~~Lkp---gG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 174 (258)
T PRK01683 100 NASLQWLPDHL--ELFPRLVSLLAP---GGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDA 174 (258)
T ss_pred ccChhhCCCHH--HHHHHHHHhcCC---CcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHH
Confidence 99999999887 789999999999 888877532111111100000000 0000000000 11234577889999
Q ss_pred HHHcCCeE
Q 030291 156 FVNAGFTH 163 (180)
Q Consensus 156 l~~aGf~~ 163 (180)
+.++|+.+
T Consensus 175 l~~~g~~v 182 (258)
T PRK01683 175 LAPAACRV 182 (258)
T ss_pred HHhCCCce
Confidence 99999874
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.77 E-value=8.4e-18 Score=119.14 Aligned_cols=139 Identities=16% Similarity=0.178 Sum_probs=102.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC-CCcc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI-PPSD 75 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~-~~~D 75 (180)
+++.+. ..++.+|||+|||+|..+..+++. +.+++++|+++ +++.+++ ..++++.+.|+.+ +. ..||
T Consensus 22 l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 22 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 344444 456789999999999999999987 56899999976 8887764 2457888888854 22 3599
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|+++.++||+++.....+++++.++|+| ||.+++........... .......++.+++.+.
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~---------------~~~~~~~~~~~el~~~ 159 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPC---------------TVGFPFAFKEGELRRY 159 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCC---------------CCCCCCccCHHHHHHH
Confidence 99999999999877778999999999999 89877665443322100 0001133578889888
Q ss_pred HHHcCCeEEEEe
Q 030291 156 FVNAGFTHYKIA 167 (180)
Q Consensus 156 l~~aGf~~~~~~ 167 (180)
++ ||++++..
T Consensus 160 ~~--~~~~~~~~ 169 (197)
T PRK11207 160 YE--GWEMVKYN 169 (197)
T ss_pred hC--CCeEEEee
Confidence 87 89887763
No 27
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.76 E-value=2.1e-17 Score=120.37 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=115.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~~~~D~v~~~ 80 (180)
..+..+|||+|||+|.++..+++.++ ..+++++|+++ +++.+++ ..++++...|+.+. .+.||+|+++
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 34568999999999999999999876 68999999965 7776654 25688898888552 2369999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh-h-cc----ceeeEee--------cCCcc
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK-L-LF----DIFMNFN--------VGGKE 146 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~~~~~~--------~~~~~ 146 (180)
.+++++++.. .+++++.++|+| ||.+++.+...+............ . .. ....... .-...
T Consensus 129 ~~l~~~~~~~--~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (239)
T PRK00216 129 FGLRNVPDID--KALREMYRVLKP---GGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAF 203 (239)
T ss_pred cccccCCCHH--HHHHHHHHhccC---CcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhC
Confidence 9999999887 779999999999 999999887654332110000000 0 00 0000000 00134
Q ss_pred cCHHHHHHHHHHcCCeEEEEeec-CCceeEEEEeC
Q 030291 147 RTEQEWGSLFVNAGFTHYKIAPI-FGIKSLIEVYP 180 (180)
Q Consensus 147 ~~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~~~~~ 180 (180)
++.++|.++++++||+.+++... .++..++.+++
T Consensus 204 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 204 PDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred CCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 57899999999999999999886 46666666553
No 28
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=1.8e-17 Score=121.84 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=104.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEE
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFF 78 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~ 78 (180)
.+++.+. ..+..+|||+|||+|.++..+.+. +.+++++|+++ +++.+++ .....+.++|+.. +. ..||+|+
T Consensus 33 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 33 ALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred HHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence 3444554 345789999999999999888775 67899999966 8888876 3345788888854 22 2599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHH
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (180)
++.++++.++.. .+++++.++|+| ||.++++.+...... ++...+...+ .......+.+.+++.+++++
T Consensus 109 s~~~l~~~~d~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~---el~~~~~~~~---~~~~~~~~~~~~~l~~~l~~ 177 (251)
T PRK10258 109 SNLAVQWCGNLS--TALRELYRVVRP---GGVVAFTTLVQGSLP---ELHQAWQAVD---ERPHANRFLPPDAIEQALNG 177 (251)
T ss_pred ECchhhhcCCHH--HHHHHHHHHcCC---CeEEEEEeCCCCchH---HHHHHHHHhc---cCCccccCCCHHHHHHHHHh
Confidence 999999998887 789999999999 899888765433211 1212211111 11123356789999999998
Q ss_pred cCCeE
Q 030291 159 AGFTH 163 (180)
Q Consensus 159 aGf~~ 163 (180)
.|++.
T Consensus 178 ~~~~~ 182 (251)
T PRK10258 178 WRYQH 182 (251)
T ss_pred CCcee
Confidence 88864
No 29
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.74 E-value=9.2e-18 Score=116.56 Aligned_cols=156 Identities=17% Similarity=0.197 Sum_probs=113.2
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc--cCCCccEEEe
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ--FIPPSDAFFF 79 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~--~~~~~D~v~~ 79 (180)
.++..++ .....+|.|+|||+|..+..|.+++|.+.++|+|.|. |++.|++ ..+++|..+|+.+ +.+..|++++
T Consensus 21 dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfa 98 (257)
T COG4106 21 DLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFA 98 (257)
T ss_pred HHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhh
Confidence 4666777 7889999999999999999999999999999999966 9999976 7899999999966 3447999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcc----ceeeEeecCCcccCHHHHHHH
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLF----DIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+.+|+++++.. .+|.++...|.| ||.+.+.-+..-+.+.+..+.+..... .+...........++..+-++
T Consensus 99 NAvlqWlpdH~--~ll~rL~~~L~P---gg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l 173 (257)
T COG4106 99 NAVLQWLPDHP--ELLPRLVSQLAP---GGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL 173 (257)
T ss_pred hhhhhhccccH--HHHHHHHHhhCC---CceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence 99999999998 789999999999 777776543322222222222222110 010100112234577788888
Q ss_pred HHHcCCeEEEEe
Q 030291 156 FVNAGFTHYKIA 167 (180)
Q Consensus 156 l~~aGf~~~~~~ 167 (180)
|...+-+ ++++
T Consensus 174 La~~~~r-vDiW 184 (257)
T COG4106 174 LAPLACR-VDIW 184 (257)
T ss_pred hCcccce-eeee
Confidence 8777654 3443
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.73 E-value=8.1e-17 Score=119.64 Aligned_cols=145 Identities=17% Similarity=0.285 Sum_probs=107.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D~v~~~~ 81 (180)
++++.+|||||||+|..+..+++. .+..+++++|+++ +++.+++ ..++++..+|+.+ +. ..||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567899999999999988777665 4556899999965 8888875 3588899998854 22 2699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
++++.++.. ++++++.++|+| ||.+++.+.......... . ...... .........+.+++.++++++||
T Consensus 155 v~~~~~d~~--~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~~-~---~~~~~~--~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKP---GGRFAISDVVLRGELPEE-I---RNDAEL--YAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCCHH-H---HHhHHH--HhccccCCCCHHHHHHHHHHCCC
Confidence 999998877 779999999999 999999987654432211 1 111111 11112234678999999999999
Q ss_pred eEEEEee
Q 030291 162 THYKIAP 168 (180)
Q Consensus 162 ~~~~~~~ 168 (180)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887644
No 31
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.73 E-value=8.3e-17 Score=124.34 Aligned_cols=153 Identities=11% Similarity=0.119 Sum_probs=111.9
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcccCCCccEEEec
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~~~~~~D~v~~~ 80 (180)
+++.+. ++++.+|||||||+|.++..+++.+ +++++++|+++ +++.+++ ..++++...|+.+..+.||.|++.
T Consensus 159 l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~ 235 (383)
T PRK11705 159 ICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV 235 (383)
T ss_pred HHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence 445555 6788999999999999999998876 67999999976 8887765 235778888885444579999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.+++|+++.....+++++.++|+| ||.+++.+......... .....+ .+...++...+.+++.+.++ .|
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~-----~~~~i~--~yifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTN-----VDPWIN--KYIFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCC-----CCCCce--eeecCCCcCCCHHHHHHHHH-CC
Confidence 999999877666899999999999 89999877644332111 011111 12234455667888877766 58
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|.+.++...+.
T Consensus 305 ~~v~d~~~~~~ 315 (383)
T PRK11705 305 FVMEDWHNFGA 315 (383)
T ss_pred cEEEEEecChh
Confidence 99888766543
No 32
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.73 E-value=1.2e-16 Score=115.17 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=114.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC----CCCeeEEecCCccc---CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF---IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~---~~~~D~v~~~~~l 83 (180)
..++.+|||+|||+|..+..+++..+. .+++++|+++ ++..+++ ..++++..+|+.+. .+.||+|+++.++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 346789999999999999999998865 6899999965 6666654 35788989988552 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh--hccceee--Ee-e---------cCCcccCH
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK--LLFDIFM--NF-N---------VGGKERTE 149 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~-~---------~~~~~~~~ 149 (180)
++.++.. .+++++.+.|+| ||.+++.+...+............ ....... .. . ....+.+.
T Consensus 117 ~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (223)
T TIGR01934 117 RNVTDIQ--KALREMYRVLKP---GGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQ 191 (223)
T ss_pred CCcccHH--HHHHHHHHHcCC---CcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCH
Confidence 9998877 789999999999 999999887544321111000000 0000000 00 0 00134588
Q ss_pred HHHHHHHHHcCCeEEEEeecCCc-eeEEEEeC
Q 030291 150 QEWGSLFVNAGFTHYKIAPIFGI-KSLIEVYP 180 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~~~~-~~~~~~~~ 180 (180)
++|.+.++++||+.++.....+. ..++.++|
T Consensus 192 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 192 EELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 99999999999999888877554 55665543
No 33
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.73 E-value=3.8e-18 Score=121.75 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=107.4
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CC----CeeEEecCCcccCCCccEEEeccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TD----NLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~----~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
+.+|||+|||+|.++..|++. ++.++|+|.++ |++.|++ .. ++++.+.+..+..+.||.|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 477999999999999999999 67899999976 8888874 23 466777777556667999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch--hhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR--ELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
++|+.|+. .++..+.+.|+| +|.+++++.+..-..... .+.+.....- ...++...++.+++++..+++.++
T Consensus 168 leHV~dp~--~~l~~l~~~lkP---~G~lfittinrt~lS~~~~i~~~E~vl~iv-p~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKP---NGRLFITTINRTILSFAGTIFLAEIVLRIV-PKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCC---CCceEeeehhhhHHHhhccccHHHHHHHhc-CCCCcCHHHcCCHHHHHHHHHhcC
Confidence 99999998 889999999999 999999987654322111 0111111111 011112235678999999999999
Q ss_pred CeEEEEe
Q 030291 161 FTHYKIA 167 (180)
Q Consensus 161 f~~~~~~ 167 (180)
+++..+.
T Consensus 242 ~~v~~v~ 248 (282)
T KOG1270|consen 242 AQVNDVV 248 (282)
T ss_pred cchhhhh
Confidence 9877664
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=4.2e-17 Score=111.09 Aligned_cols=99 Identities=26% Similarity=0.439 Sum_probs=85.7
Q ss_pred cCCCeEEEeCCcccHHHHHHH-HHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-c--C-CCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIIS-EAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-F--I-PPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~-~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~--~-~~~D~v~~~~ 81 (180)
+...+|||+|||+|.++..++ +.+++.+++++|+++ +++.+++ ..++++.++|+.+ + . ..||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 467899999999999999999 457889999999966 9988875 4589999999977 2 2 3699999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+++++.+.. .+++++.+.|++ +|.+++.+..
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKP---GGILIISDPN 112 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred chhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence 999999998 779999999999 8988888876
No 35
>PRK08317 hypothetical protein; Provisional
Probab=99.72 E-value=6.9e-17 Score=117.58 Aligned_cols=155 Identities=18% Similarity=0.224 Sum_probs=108.8
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-c--CCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-F--IPPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~--~~~~ 74 (180)
+++.+. +.++.+|||+|||+|.++..+++.+ |..+++++|+++ +++.+++ ..++++...|+.. + .+.|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445555 6778999999999999999999887 778999999965 7766653 4678899988754 2 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhh-hhhhccceeeEeecCCcccCHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELT-ESKLLFDIFMNFNVGGKERTEQEWG 153 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
|+|++..+++|+.++. .+++++.++|+| ||.+++.++............ ........+. ...........+.
T Consensus 89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 161 (241)
T PRK08317 89 DAVRSDRVLQHLEDPA--RALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DHFADPWLGRRLP 161 (241)
T ss_pred eEEEEechhhccCCHH--HHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHHH--hcCCCCcHHHHHH
Confidence 9999999999999987 789999999999 999999875322110000000 0000111000 0112334567899
Q ss_pred HHHHHcCCeEEEEee
Q 030291 154 SLFVNAGFTHYKIAP 168 (180)
Q Consensus 154 ~~l~~aGf~~~~~~~ 168 (180)
+.++++||+.+++..
T Consensus 162 ~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 162 GLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHcCCCceeEEE
Confidence 999999999776643
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.72 E-value=1.3e-16 Score=112.93 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=100.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-c-CCCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-F-IPPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~-~~~~D~ 76 (180)
+++.+. ..++.+|||+|||+|.++..+++. +.+++++|+++ +++.+++ .-++++.+.|... + .+.||+
T Consensus 22 l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 22 VREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 444554 456789999999999999999986 56899999966 8887653 2246677777643 2 236999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|+++.++|+++......+++++.++|+| ||.+++.+......... . ......++.+++.+.+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~-------------~--~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPC-------------H--MPFSFTFKEDELRQYY 159 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCC-------------C--CCcCccCCHHHHHHHh
Confidence 9999999999877777999999999999 89877766533221000 0 0011346888998888
Q ss_pred HHcCCeEEEEe
Q 030291 157 VNAGFTHYKIA 167 (180)
Q Consensus 157 ~~aGf~~~~~~ 167 (180)
+ +|+++...
T Consensus 160 ~--~~~~~~~~ 168 (195)
T TIGR00477 160 A--DWELLKYN 168 (195)
T ss_pred C--CCeEEEee
Confidence 6 58877665
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.71 E-value=1.8e-16 Score=115.25 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=100.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeCch-hhccCCC---CCCeeEEecCCc--c-cCCCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEA----FPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMF--Q-FIPPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~--~-~~~~~D~v~~~~~ 82 (180)
.++.+|||||||+|.++..+++. .++.+++++|+++ |++.+++ ..++++...+.. . ...+||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 46789999999999998888754 3567899999965 8888875 245666655442 2 2236999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-----cCCcccCHHHHHHHHH
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-----VGGKERTEQEWGSLFV 157 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~ 157 (180)
+||+++++..++++++.++++ |.+++.+...+...... +.............. ...+.++.+++.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999999877789999999986 56666665544211100 011111000000111 1125689999999999
Q ss_pred HcCCeEEEEeec
Q 030291 158 NAGFTHYKIAPI 169 (180)
Q Consensus 158 ~aGf~~~~~~~~ 169 (180)
+ ||++...+.+
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 9 9998776655
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.71 E-value=4.7e-17 Score=101.81 Aligned_cols=88 Identities=23% Similarity=0.480 Sum_probs=73.3
Q ss_pred EEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cC--CCccEEEeccccccCChHHHH
Q 030291 20 VDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 20 LdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~~~~ 92 (180)
||+|||+|..+..+++. +..+++++|+++ +++.+++ ..++++.+.|+.+ +. .+||+|++..+++|+++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~-- 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPE-- 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHH--
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHH--
Confidence 89999999999999999 788999999966 8888875 5567799999855 33 3699999999999997776
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+++++.++||| ||.+++
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 889999999999 888765
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.70 E-value=1.2e-17 Score=105.76 Aligned_cols=87 Identities=23% Similarity=0.447 Sum_probs=57.6
Q ss_pred EEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCe---eEEecCCcccC--CCccEEEeccccccCC
Q 030291 20 VDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNL---KYIEGDMFQFI--PPSDAFFFKTVFHFFD 87 (180)
Q Consensus 20 LdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~---~~~~~d~~~~~--~~~D~v~~~~~l~~~~ 87 (180)
||||||+|.++..+++.+|..+++++|+|+ |++.+++ ..+. ++...+..... .+||+|++..++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999999999999999999976 9988876 2233 33333332222 2799999999999997
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKV 111 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~ 111 (180)
+.. .++++++++|+| ||.+
T Consensus 81 ~~~--~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 DIE--AVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -HH--HHHHHHTTT-TS---S-EE
T ss_pred hHH--HHHHHHHHHcCC---CCCC
Confidence 776 889999999999 7865
No 40
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.70 E-value=1.1e-16 Score=116.55 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=101.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc-c--CCCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ-F--IPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~-~--~~~~D~v~~~~~l~~~~~ 88 (180)
.+.+|||+|||+|.++..+++.++..+++++|++. ++..+++ ..++.+..+|+.+ + .+.||+|+++.++||+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 45789999999999999999999888899999965 7766654 3478899999855 2 235999999999999988
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
.. .+++++.++|+| ||.+++..+..... ......... ....+.+.++|.++++++ |+.+...
T Consensus 114 ~~--~~l~~~~~~L~~---~G~l~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LS--QALSELARVLKP---GGLLAFSTFGPGTL------HELRQSFGQ-----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HH--HHHHHHHHHcCC---CcEEEEEeCCccCH------HHHHHHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 87 789999999999 89998876533221 111111110 123456788888888887 7765543
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.69 E-value=2.9e-16 Score=113.13 Aligned_cols=144 Identities=13% Similarity=0.169 Sum_probs=101.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
.+..+|||+|||+|.++..+++. +.+++++|+++ ++..+++ ..++++.++|+.+....||+|++..+++|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 45789999999999999999876 56899999965 8887764 14789999998654467999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeE--eecCCcccCHHHHHHHHHHcCCeE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMN--FNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++......+++++.+++++ |.++.... .... ............. .......++.+++.++++++||++
T Consensus 132 ~~~~~~~~~l~~i~~~~~~----~~~i~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 201 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKE----RVIFTFAP---KTAW---LAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKI 201 (219)
T ss_pred CCHHHHHHHHHHHHHHhCC----CEEEEECC---CchH---HHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCcee
Confidence 9877777889999999887 44333221 1111 1011111111000 011224568999999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
+.....
T Consensus 202 ~~~~~~ 207 (219)
T TIGR02021 202 VREGLV 207 (219)
T ss_pred eeeecc
Confidence 877644
No 42
>PRK05785 hypothetical protein; Provisional
Probab=99.68 E-value=9.1e-16 Score=110.86 Aligned_cols=155 Identities=11% Similarity=0.075 Sum_probs=100.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
.++.+|||||||+|..+..+.+.+ +.+++++|+++ |++.+++. ..+.++|+.+ +. .+||+|++.+++||+++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 357899999999999999998886 56899999976 99988753 2456777744 32 369999999999999998
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh--hccceeeE-eec-----------CCcccCHHHHHHH
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK--LLFDIFMN-FNV-----------GGKERTEQEWGSL 155 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~-----------~~~~~~~~~~~~~ 155 (180)
. ++++++.++||| ...+ .+...++......+.... ........ ... -..+.+.+++.++
T Consensus 127 ~--~~l~e~~RvLkp---~~~i--le~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~ 199 (226)
T PRK05785 127 E--KVIAEFTRVSRK---QVGF--IAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREI 199 (226)
T ss_pred H--HHHHHHHHHhcC---ceEE--EEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 8 779999999998 4322 333332221111010000 00000000 000 0134578999999
Q ss_pred HHHcCCeEEEEeec-CCceeEEEEe
Q 030291 156 FVNAGFTHYKIAPI-FGIKSLIEVY 179 (180)
Q Consensus 156 l~~aGf~~~~~~~~-~~~~~~~~~~ 179 (180)
++++| ..++.... .|...+...+
T Consensus 200 ~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 200 FEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHHh-CceEEEEccccEEEEEEEe
Confidence 99974 54555544 5566665554
No 43
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=2.1e-16 Score=100.36 Aligned_cols=86 Identities=17% Similarity=0.336 Sum_probs=71.0
Q ss_pred EEEeCCcccHHHHHHHHHC---CCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc---cCCCccEEEecc-cccc
Q 030291 19 MVDVGGGTGAFARIISEAF---PGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ---FIPPSDAFFFKT-VFHF 85 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~---~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~---~~~~~D~v~~~~-~l~~ 85 (180)
|||+|||+|..+..+.+.+ |..+++++|+++ |++.+++ ..+++++++|+.+ ..+.||+|++.+ +++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999886 457999999966 9988875 3589999999965 234799999955 5999
Q ss_pred CChHHHHHHHHHHHHhhcc
Q 030291 86 FDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p 104 (180)
+.+++...+++++.++|+|
T Consensus 81 ~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP 99 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=9.9e-16 Score=108.92 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=85.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccCC--CccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFIP--PSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~~--~~D~v~~~~~l~~~~~ 88 (180)
++++.+|||||||+|..+..+.+..++.+++++|+++ +++.+++ ..++.+.++|+.++.+ +||+|+++.+++|+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 4567899999999999999999887888999999976 9999876 4678888888866433 6999999999999987
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
....++++++.++++ +.+++.+...+
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~ 146 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNP 146 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCC
Confidence 777789999999873 78888887543
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=1.5e-15 Score=113.62 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=98.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc--CCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~ 85 (180)
..+.+|||+|||+|.++..+++. +.+++++|.++ +++.+++ ..++++...|+... ..+||+|++..++||
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999886 67899999976 8877654 33678888887442 236999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
++.+....+++++.++|+| ||.+++........... . ......++.+++.+.++. |+++.
T Consensus 197 l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~--------~-------~p~~~~~~~~el~~~~~~--~~i~~ 256 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPC--------P-------MPFSFTFKEGELKDYYQD--WEIVK 256 (287)
T ss_pred CCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCC--------C-------CCCCcccCHHHHHHHhCC--CEEEE
Confidence 9887788999999999999 89877755432221000 0 011234678899998854 88877
Q ss_pred Ee
Q 030291 166 IA 167 (180)
Q Consensus 166 ~~ 167 (180)
..
T Consensus 257 ~~ 258 (287)
T PRK12335 257 YN 258 (287)
T ss_pred Ee
Confidence 64
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=1.1e-15 Score=121.72 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=104.7
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc---cC--CCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ---FI--PPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~---~~--~~~ 74 (180)
+++.+. ..+..+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..++++.++|+.+ +. .+|
T Consensus 29 il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~f 104 (475)
T PLN02336 29 ILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSV 104 (475)
T ss_pred HHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCE
Confidence 344444 3456799999999999999999884 4799999965 8876643 4578999999853 22 369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
|+|+++.+++|++++....+++++.++|+| ||.+++.+........ ..+ .......+....|..
T Consensus 105 D~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~---------~~~----~~~~~~~~~~~~~~~ 168 (475)
T PLN02336 105 DLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGD---------SKR----KNNPTHYREPRFYTK 168 (475)
T ss_pred EEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCc---------ccc----cCCCCeecChHHHHH
Confidence 999999999999998777999999999999 9999998765332210 000 011123456789999
Q ss_pred HHHHcCCeEE
Q 030291 155 LFVNAGFTHY 164 (180)
Q Consensus 155 ~l~~aGf~~~ 164 (180)
++.++||...
T Consensus 169 ~f~~~~~~~~ 178 (475)
T PLN02336 169 VFKECHTRDE 178 (475)
T ss_pred HHHHheeccC
Confidence 9999998765
No 47
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.65 E-value=2.8e-15 Score=108.76 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=100.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCCCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
.+..+|||||||+|.++..+++. +.+++++|+++ ++..+++ ..++++..+|+....+.||+|++..+++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 45779999999999999999887 45699999966 8887764 14789999996334457999999999999
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee-E-eecCCcccCHHHHHHHHHHcCCeE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM-N-FNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++++....+++++.+.+++ |.++.... .... ..........+. . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFAP---YTPL---LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEECC---ccHH---HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9988877889999887654 44443221 1110 001111111100 0 011234568899999999999999
Q ss_pred EEEeecC
Q 030291 164 YKIAPIF 170 (180)
Q Consensus 164 ~~~~~~~ 170 (180)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 8887653
No 48
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.65 E-value=2.7e-15 Score=112.81 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC-----------CCeeEEecCCcccCCCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT-----------DNLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~-----------~~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
++.+|||||||+|.++..+++. +.+++++|+++ |++.+++. .++++.+.|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999987 67899999976 88877641 2567888887444457999999999
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
++|+++.....+++.+.+ +.+ |++++.. . +.......+......+.-.. .......++.+++.++++++||+
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~-~-p~~~~~~~l~~~g~~~~g~~-~~~r~y~~s~eel~~lL~~AGf~ 293 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF-A-PKTLYYDILKRIGELFPGPS-KATRAYLHAEADVERALKKAGWK 293 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe-C-CcchHHHHHHHHHhhcCCCC-cCceeeeCCHHHHHHHHHHCCCE
Confidence 999988776677777775 445 5555532 1 11111110101000110000 00001235899999999999999
Q ss_pred EEEEeecCC
Q 030291 163 HYKIAPIFG 171 (180)
Q Consensus 163 ~~~~~~~~~ 171 (180)
+.+......
T Consensus 294 v~~~~~~~~ 302 (315)
T PLN02585 294 VARREMTAT 302 (315)
T ss_pred EEEEEEeec
Confidence 887665543
No 49
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.64 E-value=5.8e-15 Score=108.34 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=98.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC---C----CCCeeEEecCCcc--cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP---Q----TDNLKYIEGDMFQ--FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~---~----~~~~~~~~~d~~~--~~~~~D~v~~~~~l 83 (180)
-.+++|||||||.|.++-.++...+ ..++|+|.+. ...+++ + ...+......+.+ ....||+|++.++|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 3578999999999999999998853 3689999854 333322 1 2233343333322 23469999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
+|..++- ..|.++++.|++ ||.+++-....+...... +........ ...-+...+...+...++++||+.
T Consensus 193 YHrr~Pl--~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa~----m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 193 YHRRSPL--DHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYAK----MRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred hccCCHH--HHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCcccC----CCceEEeCCHHHHHHHHHHcCCce
Confidence 9999999 779999999999 888887666555443322 111110000 001113358899999999999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
+++.+.
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 998755
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=1.4e-14 Score=101.22 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=101.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-CCCccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-IPPSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-~~~~D~v~~~~~l~~ 85 (180)
..++.+|||+|||+|.++..+.+..+ +++++|+++ +++.+++ ..++++..+|..+. .+.||+|+++-.+++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLP 94 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCC
Confidence 34567899999999999999998864 899999965 8877764 34678888888653 347999999988776
Q ss_pred CChH-------------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcc
Q 030291 86 FDDE-------------------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKE 146 (180)
Q Consensus 86 ~~~~-------------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
.++. ....+++++.++|+| ||.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~---------------------------- 143 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSL---------------------------- 143 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEecc----------------------------
Confidence 6532 135789999999999 99988865311
Q ss_pred cCHHHHHHHHHHcCCeEEEEeecCCceeEEEEe
Q 030291 147 RTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEVY 179 (180)
Q Consensus 147 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~ 179 (180)
...+++.+.+++.||+...+...+-+.--+.++
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 124778899999999988887776665444443
No 51
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=1.4e-14 Score=103.50 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=99.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC---
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI--- 71 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~--- 71 (180)
+++.+|||+|||.|..+..|+++ +..++++|+|+ +++.+.+ ..++++.++|+.+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 46689999999999999999988 77899999976 7776411 346889999997632
Q ss_pred -CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHH
Q 030291 72 -PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQ 150 (180)
Q Consensus 72 -~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
+.||.|+-..+++|++...+..+++.+.++|+| ||.+++.......... .......+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~-----------------~gpp~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEM-----------------AGPPFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCC-----------------CCcCCCCCHH
Confidence 469999999999999999889999999999999 8887776654432110 0011346888
Q ss_pred HHHHHHHHcCCeEEEEe
Q 030291 151 EWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 151 ~~~~~l~~aGf~~~~~~ 167 (180)
++.++++. +|++..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99888863 45554443
No 52
>PRK04266 fibrillarin; Provisional
Probab=99.62 E-value=6.9e-14 Score=100.78 Aligned_cols=139 Identities=10% Similarity=0.112 Sum_probs=96.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccC----CCCCCeeEEecCCccc------CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDM----PQTDNLKYIEGDMFQF------IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a----~~~~~~~~~~~d~~~~------~~~~D~v~~~~ 81 (180)
++++.+|||+|||+|.++..+++..+..+++++|.++ |++.+ ++..++.++.+|...+ ...+|+|++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d- 148 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQD- 148 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEEC-
Confidence 6788999999999999999999887656899999965 76633 3356889999998542 1259999853
Q ss_pred ccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 82 VFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 82 ~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
+.++. ...+++++.++||| ||.++++-.... .+... .. . ...++..+.++++|
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~--------------~d~~~---~~-~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARS--------------IDVTK---DP-K-EIFKEEIRKLEEGG 202 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCC---CcEEEEEEeccc--------------ccCcC---CH-H-HHHHHHHHHHHHcC
Confidence 22222 23568999999999 999999522110 00000 00 0 11234459999999
Q ss_pred CeEEEEeecCCc---eeEEEE
Q 030291 161 FTHYKIAPIFGI---KSLIEV 178 (180)
Q Consensus 161 f~~~~~~~~~~~---~~~~~~ 178 (180)
|+.++.....+. +..+.+
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEE
Confidence 999999888655 554443
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.62 E-value=4.9e-15 Score=104.28 Aligned_cols=119 Identities=17% Similarity=0.296 Sum_probs=91.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC-CccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP-PSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~-~~D~v~~~~~l~ 84 (180)
..++.+|||+|||+|.++..+++.+|+.+++++|.++ +++.+++ ..++++.++|.....+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 5678899999999999999999998889999999955 7777764 2478888888744333 699999977654
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
++ ..+++.+.+.|+| ||.+++..... -+.+++...+++.||+.+
T Consensus 109 ~~-----~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 NL-----TAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred CH-----HHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 32 2678999999999 88887743211 123567788999998766
Q ss_pred EEe
Q 030291 165 KIA 167 (180)
Q Consensus 165 ~~~ 167 (180)
++.
T Consensus 153 ~~~ 155 (187)
T PRK08287 153 DCV 155 (187)
T ss_pred eEE
Confidence 653
No 54
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.62 E-value=2.4e-15 Score=110.98 Aligned_cols=99 Identities=20% Similarity=0.365 Sum_probs=80.1
Q ss_pred cCCCeEEEeCCcccH----HHHHHHHHCC-----CCeEEEeeCch-hhccCCCC--------------------------
Q 030291 14 QGLRSMVDVGGGTGA----FARIISEAFP-----GIKCTVLDLPH-AVTDMPQT-------------------------- 57 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~----~~~~l~~~~~-----~~~~~~~D~~~-~~~~a~~~-------------------------- 57 (180)
.++.+|+|+|||+|. ++..+.+.++ +.+++++|+++ |++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999997 3445555543 57899999976 99888751
Q ss_pred -------CCeeEEecCCcccC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 58 -------DNLKYIEGDMFQFI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 58 -------~~~~~~~~d~~~~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+++|.+.|+.+.. +.||+|+|..+++|++++...++++++.++|+| ||.+++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 36889999997632 369999999999999988888999999999999 88888853
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.61 E-value=3.6e-15 Score=104.03 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=94.0
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-cC-CCccE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-FI-PPSDA 76 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~~-~~~D~ 76 (180)
+++.+. .-++.++||+|||.|..+..|++. +..|+++|.++ .++.+++ .-.++..+.|+.+ .. ..||+
T Consensus 22 v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 22 VLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 334444 456789999999999999999999 77899999976 7776653 4558888999855 22 36999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|++..+++|++.+.+.++++.+.+.++| ||.+++........... .. .....+.+.++.+.+
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~~~d~p~--------~~-------~~~f~~~~~EL~~~y 159 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFMETPDYPC--------PS-------PFPFLLKPGELREYY 159 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB--SSS----------SS---------S--B-TTHHHHHT
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecccCCCCC--------CC-------CCCcccCHHHHHHHh
Confidence 9999999999999999999999999999 88877755433221100 00 011234567777777
Q ss_pred HHcCCeEEEE
Q 030291 157 VNAGFTHYKI 166 (180)
Q Consensus 157 ~~aGf~~~~~ 166 (180)
. ||++++.
T Consensus 160 ~--dW~il~y 167 (192)
T PF03848_consen 160 A--DWEILKY 167 (192)
T ss_dssp T--TSEEEEE
T ss_pred C--CCeEEEE
Confidence 4 6887664
No 56
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.61 E-value=1.3e-14 Score=103.35 Aligned_cols=147 Identities=22% Similarity=0.287 Sum_probs=107.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC------CeEEEeeCc-hhhccCCC---------CCCeeEEecCCcc-cCC--C
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG------IKCTVLDLP-HAVTDMPQ---------TDNLKYIEGDMFQ-FIP--P 73 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~------~~~~~~D~~-~~~~~a~~---------~~~~~~~~~d~~~-~~~--~ 73 (180)
..+..++||++||||.++-.+++..+. .++++.|++ +|+..+++ ..++.++.+|..+ +++ .
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 455689999999999999999988655 789999995 59888764 3458899999954 444 5
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee---c--------
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN---V-------- 142 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------- 142 (180)
+|...+.+.+.++++.+ +.|++++|+||| ||++++.++..-+.+.-..+.+ ...++...... .
T Consensus 178 ~D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred ceeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhhhhHhhhhh
Confidence 99999999999999999 669999999999 9999998876544221111111 11111100000 0
Q ss_pred ----CCcccCHHHHHHHHHHcCCeEEE
Q 030291 143 ----GGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 143 ----~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
-.++.+-+++..+.+++||..+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 01445788999999999999886
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=4.8e-14 Score=98.76 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=89.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--CCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF--IPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~--~~~~D~v~~~~~l 83 (180)
++++.+|||+|||+|..+..++...++.+++++|.++ +++.+++ ..++++.++|+.+. ..+||+|+++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 3457899999999999999999988899999999965 8887764 34599999998552 236999999753
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.+.. .+++++.+.|+| ||.+++.... ....++.++.++.|+.+
T Consensus 122 ---~~~~--~~l~~~~~~Lkp---GG~lv~~~~~-----------------------------~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 ---ASLS--DLVELCLPLLKP---GGRFLALKGR-----------------------------DPEEEIAELPKALGGKV 164 (187)
T ss_pred ---cCHH--HHHHHHHHhcCC---CeEEEEEeCC-----------------------------ChHHHHHHHHHhcCceE
Confidence 3333 789999999999 8988886421 12345667777778886
Q ss_pred EEEe
Q 030291 164 YKIA 167 (180)
Q Consensus 164 ~~~~ 167 (180)
.+.+
T Consensus 165 ~~~~ 168 (187)
T PRK00107 165 EEVI 168 (187)
T ss_pred eeeE
Confidence 5554
No 58
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.61 E-value=2.4e-15 Score=106.44 Aligned_cols=147 Identities=10% Similarity=0.062 Sum_probs=95.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---cC--CCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---FI--PPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---~~--~~~D~v~~~~~l~~~ 86 (180)
++++.+|||||||+|.++..+++.. +..++++|+++ ++..+++ .++++.++|+.+ +. .+||+|+++.++||+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 4567899999999999998887664 56789999965 7777754 357788888744 12 259999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhc--cce---eeEeecCCcccCHHHHHHHHHHcCC
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLL--FDI---FMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
+++. .+++++.+.+++ +.+.+ +..........+...... ... ......+.++++.+++.++++++||
T Consensus 89 ~d~~--~~l~e~~r~~~~----~ii~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 89 RNPE--EILDEMLRVGRH----AIVSF--PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCHH--HHHHHHHHhCCe----EEEEc--CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 9987 779988887655 33222 111000000000000000 000 0000112357799999999999999
Q ss_pred eEEEEeec
Q 030291 162 THYKIAPI 169 (180)
Q Consensus 162 ~~~~~~~~ 169 (180)
++++....
T Consensus 161 ~v~~~~~~ 168 (194)
T TIGR02081 161 RILDRAAF 168 (194)
T ss_pred EEEEEEEe
Confidence 99887654
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.61 E-value=7.8e-15 Score=106.65 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=100.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc----CCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
.++.+|||||||+|.++..+.+. +++++++|+++ ++..+++ ..++++...+..+. ...||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45778999999999999988876 56799999965 7766653 33567777777432 2369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcccee-eEeecCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIF-MNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+|.++.. .+++++.+.|+| ||.+++........................ .......++.+.++|.++++++||+
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCHH--HHHHHHHHHcCC---CcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 9999887 779999999999 899887754321110000000000000000 0001123456889999999999999
Q ss_pred EEEEe
Q 030291 163 HYKIA 167 (180)
Q Consensus 163 ~~~~~ 167 (180)
+++..
T Consensus 200 ~v~~~ 204 (233)
T PRK05134 200 VQDIT 204 (233)
T ss_pred Eeeee
Confidence 98775
No 60
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.60 E-value=8.9e-15 Score=110.05 Aligned_cols=98 Identities=20% Similarity=0.347 Sum_probs=77.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-----C--CCeeEEecCCccc--C-CCc-----c
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-----T--DNLKYIEGDMFQF--I-PPS-----D 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-----~--~~~~~~~~d~~~~--~-~~~-----D 75 (180)
++++.+|||+|||+|..+..+++..+ +.+++++|+|+ |++.+++ . .++.++++|+.+. . +.+ .
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 34668999999999999999999876 57899999976 8877754 2 3467789999652 2 223 2
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++++...+++++..+...+|++++++|+| ||.+++
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 45556789999988888999999999999 888876
No 61
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.60 E-value=8.6e-15 Score=101.00 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=100.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-----CCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-----IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-----~~~~D~v~~~~~l~~~ 86 (180)
++++++|||+|||.|.+...|.+.. +++..|+|++. .+..|. ...++++++|+.+. ..+||.||++.+++++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 5789999999999999999888864 88999999955 454443 34577899999542 2369999999999999
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhh-hhcc-ce---eeEeecCCcccCHHHHHHHHHHcCC
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTES-KLLF-DI---FMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
.+++ ++|+++.++-+ ..+++-++.........+... +... +. ..+-..+-++.|..++++++++.|+
T Consensus 89 ~~P~--~vL~EmlRVgr------~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i 160 (193)
T PF07021_consen 89 RRPD--EVLEEMLRVGR------RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGI 160 (193)
T ss_pred hHHH--HHHHHHHHhcC------eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCC
Confidence 9998 67888877743 444433332111111000000 0000 00 0011133467799999999999999
Q ss_pred eEEEEeecCC
Q 030291 162 THYKIAPIFG 171 (180)
Q Consensus 162 ~~~~~~~~~~ 171 (180)
++.+.....+
T Consensus 161 ~I~~~~~~~~ 170 (193)
T PF07021_consen 161 RIEERVFLDG 170 (193)
T ss_pred EEEEEEEEcC
Confidence 9998876533
No 62
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=5e-14 Score=98.39 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=72.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc--CCCccEEEecccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF--IPPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~ 85 (180)
++.+|||+|||+|..+..++...+..+++++|.++ +++.+++ ..+++++++|+.+. .+.||+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 37899999999999999998888888999999965 7766653 34699999999652 34799999876 432
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.. .+++.+.++|+| ||.+++.
T Consensus 121 ---~~--~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 121 ---LN--VLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred ---HH--HHHHHHHHhcCC---CCEEEEE
Confidence 22 568889999999 8888874
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.59 E-value=2.1e-14 Score=103.79 Aligned_cols=147 Identities=15% Similarity=0.165 Sum_probs=100.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CC-CeeEEecCCccc----CCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TD-NLKYIEGDMFQF----IPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~-~~~~~~~d~~~~----~~~~D~v~~~~~l 83 (180)
.+.+|||+|||+|.++..+++. +.+++++|+++ ++..+++ .. ++++...|..+. .+.||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4779999999999999988876 45699999965 7776654 22 588888887441 1369999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhcccee-eEeecCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIF-MNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+|+.++. .+++++.++|+| ||.+++........................ ........+.+.+++.++++++||+
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~ 197 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLR 197 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCe
Confidence 9999888 789999999999 898888765322110000000000000000 0001112456889999999999999
Q ss_pred EEEEee
Q 030291 163 HYKIAP 168 (180)
Q Consensus 163 ~~~~~~ 168 (180)
++++..
T Consensus 198 i~~~~~ 203 (224)
T TIGR01983 198 VKDVKG 203 (224)
T ss_pred eeeeee
Confidence 988763
No 64
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.58 E-value=1.3e-14 Score=101.51 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=117.5
Q ss_pred ccCCC-eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC----C--CCCe-eEEecCCccc---C--------C
Q 030291 13 FQGLR-SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP----Q--TDNL-KYIEGDMFQF---I--------P 72 (180)
Q Consensus 13 ~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~----~--~~~~-~~~~~d~~~~---~--------~ 72 (180)
++... +|||||||||..+..+++.+|..++.-.|... .....+ . ..|+ .-+..|+.++ . .
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 34555 49999999999999999999999999999844 322222 1 2222 2334444331 1 1
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHH
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQE 151 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (180)
.||.|++..++|-.+-.....+++...++|++ ||.+++..+...++.... +....+|...... ..+-.++.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 59999999999999988888999999999999 999999887766554332 3444444333222 2345689999
Q ss_pred HHHHHHHcCCeEEEEeecCCceeEEEEeC
Q 030291 152 WGSLFVNAGFTHYKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 180 (180)
+.++.++.|++..++...+.=.-++.++|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999988877666666654
No 65
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.58 E-value=1.3e-14 Score=101.90 Aligned_cols=142 Identities=17% Similarity=0.243 Sum_probs=97.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-----C-CCeeEEecCCcc--cC-CCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-----T-DNLKYIEGDMFQ--FI-PPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-----~-~~~~~~~~d~~~--~~-~~~D~v~~~~~l 83 (180)
....+.||.|+|.|+.+..++... -.++..+|+. +.++.|++ . ...++++..+.+ +. ..||+|++.+++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 357899999999999999775443 3468999984 48888773 2 335677777755 32 269999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.|+.|.+...+|++|+++|+| +|.+++-+........ .+|.. -+.-.++.+.+.++|++||+++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~~----DsSvTRs~~~~~~lF~~AGl~~ 196 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDEE----DSSVTRSDEHFRELFKQAGLRL 196 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEETT----TTEEEEEHHHHHHHHHHCT-EE
T ss_pred ccCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCCc----cCeeecCHHHHHHHHHHcCCEE
Confidence 999999999999999999999 8888888876654311 11110 1123468899999999999999
Q ss_pred EEEeecCCc
Q 030291 164 YKIAPIFGI 172 (180)
Q Consensus 164 ~~~~~~~~~ 172 (180)
+......++
T Consensus 197 v~~~~Q~~f 205 (218)
T PF05891_consen 197 VKEEKQKGF 205 (218)
T ss_dssp EEEEE-TT-
T ss_pred EEeccccCC
Confidence 987766553
No 66
>PLN03075 nicotianamine synthase; Provisional
Probab=99.58 E-value=1.9e-14 Score=106.41 Aligned_cols=98 Identities=14% Similarity=0.224 Sum_probs=77.5
Q ss_pred ccCCCeEEEeCCcccHHHHHH--HHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcccC---CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARII--SEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQFI---PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l--~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~~---~~~D~v~ 78 (180)
..++++|+|||||.|.++..+ +..+|+.+++++|.++ +++.|++ ..+++|..+|..+.. ..||+|+
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 347899999999988554443 3457899999999955 8877764 367999999997632 4799999
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+. +++++......++++++++.|+| ||.+++-
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 99 88998655555899999999999 7777764
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.57 E-value=6.2e-14 Score=100.59 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=98.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCccc----
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQF---- 70 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~---- 70 (180)
+++.+|||+|||.|..+..|++. +..|+++|+++ +++++.+ ..++++.++|+.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999987 77899999976 6775421 35688999999763
Q ss_pred CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHH
Q 030291 71 IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQ 150 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
.+.||.|+-..+++|++...+..+++.+.++|+| ||.+++.......... ..+....+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~-----------------~gPp~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEEL-----------------AGPPFSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccC-----------------CCCCCCCCHH
Confidence 2469999999999999999999999999999999 8866665444332210 0011346889
Q ss_pred HHHHHHHHcCCeEEEEe
Q 030291 151 EWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 151 ~~~~~l~~aGf~~~~~~ 167 (180)
++.++++. +|++..+.
T Consensus 174 el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 174 EVEALYAG-CFEIELLE 189 (218)
T ss_pred HHHHHhcC-CceEEEee
Confidence 99998853 26655443
No 68
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.57 E-value=4.9e-15 Score=102.44 Aligned_cols=131 Identities=17% Similarity=0.267 Sum_probs=92.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccCC--CccEEEecccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFIP--PSDAFFFKTVFHF 85 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~~--~~D~v~~~~~l~~ 85 (180)
.+...++||+|||.|.++..|+... .+++++|+++ .++.+++ .+++++.+.|+.+..| .||+|+++.+++|
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4566899999999999999999995 4799999966 8888874 6899999999966433 6999999999999
Q ss_pred CCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 86 FDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 86 ~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
+.+ ++...++.++.++|+| ||.+++..... . .+ . . + ++....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~rd-~-~c-----~---~---w------gh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHARD-A-NC-----R---R---W------GHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE-H-H-HH-----H---H---T------T-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEecC-C-cc-----c---c---c------CcccchHHHHHHHHHH-hhhe
Confidence 986 5678899999999999 88888866421 0 00 0 0 1 1234668888888887 5555
Q ss_pred EEee
Q 030291 165 KIAP 168 (180)
Q Consensus 165 ~~~~ 168 (180)
+...
T Consensus 176 ~~~~ 179 (201)
T PF05401_consen 176 ERVE 179 (201)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5443
No 69
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.56 E-value=9.5e-15 Score=103.25 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=108.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-------CCCccEEEec
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-------IPPSDAFFFK 80 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-------~~~~D~v~~~ 80 (180)
+.+|||||||.|...-.+++..++ .++.+.|.++ +++..++ ..++...+.|+..+ .+++|.|.+.
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 348999999999999999999877 8999999965 7777765 35555556666432 1269999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCC---cccCHHHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGG---KERTEQEWGSLFV 157 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ 157 (180)
++|..++......++.+++++||| ||.+++.|....+-.... . .....++...+....+ .+++.+++.+++.
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-F-KKGQCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-c-cCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence 999999999888999999999999 999999887554332211 0 0111222222222222 4679999999999
Q ss_pred HcCCeEEEEe
Q 030291 158 NAGFTHYKIA 167 (180)
Q Consensus 158 ~aGf~~~~~~ 167 (180)
++||..++..
T Consensus 227 ~agf~~~~~~ 236 (264)
T KOG2361|consen 227 KAGFEEVQLE 236 (264)
T ss_pred hcccchhccc
Confidence 9999987653
No 70
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.56 E-value=2.1e-14 Score=99.27 Aligned_cols=150 Identities=18% Similarity=0.127 Sum_probs=102.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCee-EEecCCcc----cCCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLK-YIEGDMFQ----FIPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~-~~~~d~~~----~~~~~D~v~~~~ 81 (180)
.....+||||||||.+-.. ...-|.++++.+|+++ |-+.+.+ ..++. |+.++..+ +..+||.|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3456789999999987653 3334689999999965 6655543 45666 77776633 234799999999
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGF 161 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 161 (180)
++-...++. +.|.+++++|+| ||.+++.+....+...-+. ......+........+..++.+.+ +.++.+-|
T Consensus 154 vLCSve~~~--k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLCSVEDPV--KQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEeccCCHH--HHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhchhhheeccceEEehhHH-HHhhhccc
Confidence 999889998 669999999999 9999999987665433221 111122221111122345566655 67888889
Q ss_pred eEEEEeecCCc
Q 030291 162 THYKIAPIFGI 172 (180)
Q Consensus 162 ~~~~~~~~~~~ 172 (180)
+..........
T Consensus 226 ~~~~~kr~~~~ 236 (252)
T KOG4300|consen 226 SIDSCKRFNFG 236 (252)
T ss_pred ccchhhcccCC
Confidence 98776655433
No 71
>PRK06922 hypothetical protein; Provisional
Probab=99.55 E-value=3.2e-14 Score=114.37 Aligned_cols=103 Identities=20% Similarity=0.348 Sum_probs=84.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-c--C--CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ-F--I--PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~-~--~--~~~D~v~~~~~ 82 (180)
.++.+|||||||+|..+..+++.+|+.+++++|+++ |++.+++ ..++.+.++|..+ + . .+||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 457899999999999999999999999999999976 8888764 2467788888754 1 2 35999999999
Q ss_pred cccCC-----------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 83 FHFFD-----------DEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 83 l~~~~-----------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+|++. .....++++++.++||| ||.+++.+...+
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGrLII~D~v~~ 541 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGRIIIRDGIMT 541 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcEEEEEeCccC
Confidence 98752 34556899999999999 999999986544
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=3.2e-13 Score=99.15 Aligned_cols=126 Identities=19% Similarity=0.209 Sum_probs=91.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---C----CCeeEEecCCcccCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---T----DNLKYIEGDMFQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~----~~~~~~~~d~~~~~~~~D~v~~~~~l~ 84 (180)
..++.+|||+|||+|.++..+++..+ .+++++|+++ +++.+++ . .++.+..++ ..||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----~~fD~Vvani~~- 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----LKADVIVANILA- 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----CCcCEEEEcCcH-
Confidence 35788999999999999987776643 3699999966 8887765 1 122222221 169999987543
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
.....+++++.++|+| ||.+++++... ...+++.+.+++.||++.
T Consensus 190 ----~~~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 190 ----NPLLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLD 234 (250)
T ss_pred ----HHHHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEE
Confidence 2234779999999999 99999865321 134678899999999999
Q ss_pred EEeecCCceeEEEEeC
Q 030291 165 KIAPIFGIKSLIEVYP 180 (180)
Q Consensus 165 ~~~~~~~~~~~~~~~~ 180 (180)
+.....++.+++..++
T Consensus 235 ~~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 235 EVLERGEWVALVGKKK 250 (250)
T ss_pred EEEEeCCEEEEEEEeC
Confidence 9999888887766543
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=1e-13 Score=90.97 Aligned_cols=100 Identities=16% Similarity=0.286 Sum_probs=78.0
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---c-CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---F-IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~-~~~ 73 (180)
+++.+. +++..+|||+|||+|..+..+++..|..+++++|+++ +++.+++ ..++++...|... . .+.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 344454 5667899999999999999999998888999999965 7777653 3578888888643 1 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||.|++....+. ..++++.+.+.|+| ||.+++.
T Consensus 89 ~D~v~~~~~~~~-----~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGGL-----LQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcchh-----HHHHHHHHHHHcCC---CCEEEEE
Confidence 999999765432 23789999999999 8888775
No 74
>PTZ00146 fibrillarin; Provisional
Probab=99.49 E-value=3.1e-12 Score=94.51 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=91.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-----hhccCCCCCCeeEEecCCccc------CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQF------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~------~~~~D~v~~~ 80 (180)
+++..+|||+|||+|.++..+++.. +.-+++++|+++ ++..++...|+.++..|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 6788999999999999999999885 345899999964 455555567899999998543 2469999987
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
.. . +++ ...++.++.++||| ||.+++. .-.... +. .......++ +++ +.|+++|
T Consensus 210 va--~-pdq-~~il~~na~r~LKp---GG~~vI~-ika~~i-------------d~---g~~pe~~f~-~ev-~~L~~~G 263 (293)
T PTZ00146 210 VA--Q-PDQ-ARIVALNAQYFLKN---GGHFIIS-IKANCI-------------DS---TAKPEVVFA-SEV-QKLKKEG 263 (293)
T ss_pred CC--C-cch-HHHHHHHHHHhccC---CCEEEEE-Eecccc-------------cc---CCCHHHHHH-HHH-HHHHHcC
Confidence 64 1 232 22456789999999 8999883 211110 00 000001112 334 7899999
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|+.++..+..+
T Consensus 264 F~~~e~v~L~P 274 (293)
T PTZ00146 264 LKPKEQLTLEP 274 (293)
T ss_pred CceEEEEecCC
Confidence 99998888754
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.49 E-value=2.5e-13 Score=104.30 Aligned_cols=106 Identities=17% Similarity=0.284 Sum_probs=83.5
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcccC--C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQFI--P 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~~--~ 72 (180)
+++.++ .....+|||+|||+|.++..+++.+|..+++++|.+. +++.+++ ..++++...|..+.. .
T Consensus 220 lL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 220 FMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 445555 3335699999999999999999999999999999976 8888764 136788888886643 3
Q ss_pred CccEEEecccccc---CChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHF---FDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~---~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+||+|+++-.+|. +.+....++++.+.++|+| ||.++++.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 6999999866654 3344455889999999999 99998874
No 76
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.47 E-value=1.9e-13 Score=94.68 Aligned_cols=99 Identities=19% Similarity=0.373 Sum_probs=79.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC--CccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP--PSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~--~~D~v~~~~~l~ 84 (180)
....+|||+|||+|.++..+++..|..+++++|.++ +++.+++ ..+++++..|..+..+ .||+|+++=-++
T Consensus 30 ~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 30 HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence 367899999999999999999999998999999966 7777764 2338999999987554 699999987766
Q ss_pred cCCh---HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDD---EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~---~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.-.+ ....+++++..+.|+| ||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 5544 2356899999999999 89887754
No 77
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=4.8e-13 Score=102.00 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=79.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC-CCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI-PPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~ 86 (180)
....+|||+|||+|.++..+++.+|..+++++|++. +++.+++ .-..++...|..... ..||+|+++-.+|+.
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCC
Confidence 345689999999999999999999989999999976 8888764 223467777775543 369999999888864
Q ss_pred Ch---HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 DD---EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ~~---~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ .....+++++.+.|+| ||.++++..
T Consensus 275 ~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 32 2345889999999999 999998764
No 78
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.45 E-value=2.1e-12 Score=94.85 Aligned_cols=124 Identities=20% Similarity=0.337 Sum_probs=92.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEeccccc-
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFKTVFH- 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~~~l~- 84 (180)
.+.+|||+|||+|.++..+++..+..+++++|+++ +++.+++ ..++++.++|+.+.. ..||+|+++-...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 45689999999999999999998888999999965 8877764 346899999997644 3699999853322
Q ss_pred -----cCChH------------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee
Q 030291 85 -----FFDDE------------------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN 141 (180)
Q Consensus 85 -----~~~~~------------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (180)
.+... ....+++++.+.|+| ||.+++..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~-------------------------- 217 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEI-------------------------- 217 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEE--------------------------
Confidence 11111 123678999999999 88877621
Q ss_pred cCCcccCHHHHHHHHHHcCCeEEEEeecC
Q 030291 142 VGGKERTEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 142 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
.....+++.+.++++||+.+++....
T Consensus 218 ---~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 218 ---GYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred ---CccHHHHHHHHHHhCCCCceEEEeCC
Confidence 01234678899999999988776553
No 79
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.45 E-value=3.9e-12 Score=92.79 Aligned_cols=157 Identities=17% Similarity=0.237 Sum_probs=114.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC------CCCe-eEEecCCccc------CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ------TDNL-KYIEGDMFQF------IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~------~~~~-~~~~~d~~~~------~~~~D~v 77 (180)
..+.+||||.||+|......+...|. .++...|.++ .++..++ ..++ +|.++|.++. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 56889999999999999988888876 7899999976 7777764 3444 9999999873 3569999
Q ss_pred EeccccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCch--hhhhhhhccceeeEeecCCcccCHHHHHH
Q 030291 78 FFKTVFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDR--ELTESKLLFDIFMNFNVGGKERTEQEWGS 154 (180)
Q Consensus 78 ~~~~~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (180)
++++.++.++|.. ....++.+.+++.| ||.++.+...+.++.... .+........ +.+ +.++..|+.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle~IAr~LtsHr~g~~-WvM-----RrRsq~EmD~ 284 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLEMIARVLTSHRDGKA-WVM-----RRRSQAEMDQ 284 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchHHHHHHHhcccCCCc-eEE-----EecCHHHHHH
Confidence 9999999999876 44679999999999 888888764443332110 0000000011 111 5579999999
Q ss_pred HHHHcCCeEEE-EeecCCceeEEEEe
Q 030291 155 LFVNAGFTHYK-IAPIFGIKSLIEVY 179 (180)
Q Consensus 155 ~l~~aGf~~~~-~~~~~~~~~~~~~~ 179 (180)
+++++||+-++ .++.+++.++..++
T Consensus 285 Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 285 LVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHcCCchhhheeccCCceEEEeec
Confidence 99999999654 45667877776654
No 80
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.44 E-value=5.3e-13 Score=94.97 Aligned_cols=99 Identities=15% Similarity=0.207 Sum_probs=76.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCC-cc-c--C--CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDM-FQ-F--I--PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~-~~-~--~--~~~D~v~~~ 80 (180)
++..+|||+|||+|..+..+++.+|+.+++++|+++ +++.+++ ..++.+.++|+ .. + . ..||+|+++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 357899999999999999999998888999999965 8887764 36799999998 32 1 2 359999987
Q ss_pred cccccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFD------DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....+.. ......+++++.++|+| ||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 6543221 11134789999999999 89998864
No 81
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.43 E-value=3.8e-14 Score=99.58 Aligned_cols=144 Identities=13% Similarity=0.165 Sum_probs=102.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCe-eEEecCCc---c--cCCCccE
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNL-KYIEGDMF---Q--FIPPSDA 76 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~-~~~~~d~~---~--~~~~~D~ 76 (180)
+++...+ ..+..++||+|||||.....+.... .+.+++|+|+ |++++...+-. +..+.+.. . ...++|+
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 4455555 5568899999999999999999884 4599999988 99999763322 23333332 1 1236999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHH
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLF 156 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (180)
|.+..++-|+.+.+ .++.-....|+| ||.+.++.-..+.... +..........+..-..+.+
T Consensus 192 i~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~-------------f~l~ps~RyAH~~~YVr~~l 253 (287)
T COG4976 192 IVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGG-------------FVLGPSQRYAHSESYVRALL 253 (287)
T ss_pred hhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCC-------------eecchhhhhccchHHHHHHH
Confidence 99999999999988 789999999999 8888886533332211 11111111234667789999
Q ss_pred HHcCCeEEEEeec
Q 030291 157 VNAGFTHYKIAPI 169 (180)
Q Consensus 157 ~~aGf~~~~~~~~ 169 (180)
+..||+++++.++
T Consensus 254 ~~~Gl~~i~~~~t 266 (287)
T COG4976 254 AASGLEVIAIEDT 266 (287)
T ss_pred HhcCceEEEeecc
Confidence 9999999988654
No 82
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=94.43 Aligned_cols=125 Identities=14% Similarity=0.239 Sum_probs=94.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-----~~~~D~v~~ 79 (180)
.+...+|||+|||+|..+..++++.+.++++++|+.+ +.+.|++ ..++++.++|+.+. ..+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 4458999999999999999999998889999999966 8888875 68999999999652 225999999
Q ss_pred ccccc----------------cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecC
Q 030291 80 KTVFH----------------FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVG 143 (180)
Q Consensus 80 ~~~l~----------------~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
+=-.+ |.......++++.+.+.||| ||.+.++-.
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r--------------------------- 171 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHR--------------------------- 171 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEec---------------------------
Confidence 62211 11222345889999999999 999988641
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 144 GKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 144 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.-...++.+++.+.+|...++...
T Consensus 172 --~erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 172 --PERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHHHhcCCCceEEEEe
Confidence 123456777777777776665544
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=8.2e-13 Score=94.24 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=74.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC---C
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI---P 72 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~---~ 72 (180)
+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|.++ +++.+++ ..++++..+|..+.. .
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 56778999999999999998888753 56899999965 7777764 235899999986532 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.||+|++...+++++ +++.+.|+| ||.+++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 699999998887654 357789999 8888774
No 84
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.41 E-value=1.5e-12 Score=92.05 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=76.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----C--CCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----I--PPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~--~~~D~v~~~ 80 (180)
+...++||||||+|.++..+++.+|...++++|++. +++.+++ ..+++++++|+.+. . ..+|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 356799999999999999999999999999999966 8877753 35899999999541 2 259998887
Q ss_pred cccccCChH------HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDDE------DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....+.... ....+++++.++|+| ||.+++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 643332211 013689999999999 89888865
No 85
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.41 E-value=8.4e-12 Score=89.18 Aligned_cols=97 Identities=13% Similarity=0.238 Sum_probs=75.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------C--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------I--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~--~~~D~v~~~ 80 (180)
++++.+|||||||+|.++..+++.. +..+++++|++++. ...+++++++|+.+. . ..+|+|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 4678899999999999999998885 45689999997642 235689999998652 2 259999998
Q ss_pred cccccCChHH---------HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDED---------CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~---------~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+.++..++. ...+|+.+.++|+| ||.+++..+
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 8776654321 13689999999999 898888653
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=7.5e-12 Score=93.15 Aligned_cols=134 Identities=17% Similarity=0.339 Sum_probs=95.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~~~l 83 (180)
..+..+|||+|||+|.++..++...+..+++++|+++ +++.+++ ..++.+.++|+.+.. ..||+|+++-..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 3466789999999999999999999889999999965 7777664 357999999986654 369999985221
Q ss_pred ------ccCCh------------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeE
Q 030291 84 ------HFFDD------------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMN 139 (180)
Q Consensus 84 ------~~~~~------------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (180)
+.+.. .....+++++.+.|+| ||.+++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~g---------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EIG---------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EEC----------------------
Confidence 11111 1234788899999999 888777 210
Q ss_pred eecCCcccCHHHHHHHHHHcCCeEEEEe-ecCCceeEEEE
Q 030291 140 FNVGGKERTEQEWGSLFVNAGFTHYKIA-PIFGIKSLIEV 178 (180)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~-~~~~~~~~~~~ 178 (180)
....+++.+++++.||..+++. +..+...++.+
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~ 273 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLG 273 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence 0123568889999999876664 33444444433
No 87
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.39 E-value=1.3e-12 Score=89.57 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=86.1
Q ss_pred EEeeCch-hhccCCC---------CCCeeEEecCCcc-cCC--CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCc
Q 030291 43 TVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-FIP--PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERG 109 (180)
Q Consensus 43 ~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-~~~--~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G 109 (180)
+|+|+|+ |++.|++ ..+++++++|..+ +.+ +||+|++..+++++++.. +++++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCc---Ce
Confidence 4799976 9988743 1368999999955 332 599999999999999887 789999999999 99
Q ss_pred EEEEEEeeeCCCCCchhhhhhhhccc-------eeeEee-c------CCcccCHHHHHHHHHHcCCeEEEEeec-CCcee
Q 030291 110 KVLIIDIVIDEKEDDRELTESKLLFD-------IFMNFN-V------GGKERTEQEWGSLFVNAGFTHYKIAPI-FGIKS 174 (180)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~------~~~~~~~~~~~~~l~~aGf~~~~~~~~-~~~~~ 174 (180)
.+++.++..+....... ...+.... ...... . -..+.+.+++.++++++||+.+..... .+..+
T Consensus 76 ~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~ 154 (160)
T PLN02232 76 RVSILDFNKSNQSVTTF-MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMG 154 (160)
T ss_pred EEEEEECCCCChHHHHH-HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhH
Confidence 99999987544322110 00000000 000000 0 013468899999999999998876655 33444
Q ss_pred EE
Q 030291 175 LI 176 (180)
Q Consensus 175 ~~ 176 (180)
+.
T Consensus 155 ~~ 156 (160)
T PLN02232 155 NL 156 (160)
T ss_pred ee
Confidence 43
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=1.8e-12 Score=92.95 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=75.2
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~ 73 (180)
+++.+. +.++.+|||||||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|.... ...
T Consensus 68 ~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~ 145 (212)
T PRK13942 68 MCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAP 145 (212)
T ss_pred HHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCC
Confidence 445555 6788999999999999999888874 456899999965 8877764 35799999998652 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
||+|++....+++ .+.+.+.|+| ||.+++.
T Consensus 146 fD~I~~~~~~~~~--------~~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 146 YDRIYVTAAGPDI--------PKPLIEQLKD---GGIMVIP 175 (212)
T ss_pred cCEEEECCCcccc--------hHHHHHhhCC---CcEEEEE
Confidence 9999998776544 3456678999 8988774
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.38 E-value=3.1e-11 Score=84.78 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=89.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCC--eeEEecCCcccCC--CccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDN--LKYIEGDMFQFIP--PSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~--~~~~~~d~~~~~~--~~D~v~~~~~ 82 (180)
.++.+|||+|||+|.++..++.. +.+++++|.++ +++.+++ ..+ +.+++.|..+..+ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 56778999999999999999888 67899999965 7777753 122 8888898866443 5999998765
Q ss_pred cccCC-------------------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecC
Q 030291 83 FHFFD-------------------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVG 143 (180)
Q Consensus 83 l~~~~-------------------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (180)
+.... ......+++++.++|+| ||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~-------------------------- 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSS-------------------------- 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEcc--------------------------
Confidence 43211 11234689999999999 8888775310
Q ss_pred CcccCHHHHHHHHHHcCCeEEEEee
Q 030291 144 GKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 144 ~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
....+++.++++++||++.....
T Consensus 151 --~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 151 --LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred --cCCHHHHHHHHHHCCCeeeeeee
Confidence 11346788999999998876543
No 90
>PHA03411 putative methyltransferase; Provisional
Probab=99.37 E-value=1.4e-11 Score=90.16 Aligned_cols=124 Identities=12% Similarity=0.134 Sum_probs=89.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccC--CCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFI--PPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~--~~~D~v~~~~~l~~~~~~~ 90 (180)
...+|||+|||+|.++..++...+..+++++|+++ +++.+++ ..+++++++|+.+.. ..||+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 45799999999999999888887678999999966 8888775 467899999997633 3699999988887765432
Q ss_pred H------------------HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHH
Q 030291 91 C------------------LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEW 152 (180)
Q Consensus 91 ~------------------~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (180)
. .++++.....|+| +|.+.+.- ...+ .+ ...++.+++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~y---ss~~-------------~y------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFAY---SGRP-------------YY------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEEE---eccc-------------cc------cccCCHHHH
Confidence 2 2455666677777 66555541 1110 00 123577889
Q ss_pred HHHHHHcCCeE
Q 030291 153 GSLFVNAGFTH 163 (180)
Q Consensus 153 ~~~l~~aGf~~ 163 (180)
.+++++.||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999864
No 91
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.36 E-value=2.1e-12 Score=95.96 Aligned_cols=91 Identities=14% Similarity=0.254 Sum_probs=71.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC---CeEEEeeCch-hhccCCC-CCCeeEEecCCcc-cC--CCccEEEecccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG---IKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHF 85 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~ 85 (180)
....+|||+|||+|.++..+++..+. ..++++|+++ ++..+++ ..++++.++|..+ +. .+||+|++...-
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP-- 161 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--
Confidence 34578999999999999999887653 4789999976 8888865 5778899998855 33 369999986541
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..++++.++|+| ||.++++.+
T Consensus 162 -------~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 162 -------CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred -------CCHHHHHhhccC---CCEEEEEeC
Confidence 336889999999 999988764
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.36 E-value=3.1e-12 Score=91.95 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=75.4
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IP 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~ 72 (180)
.+++.+. +.++.+|||||||+|..+..+++..+ ..+++++|.++ +++.+++ ..++++.++|..+. ..
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3455555 67889999999999999999988853 46799999955 8877764 35799999998653 23
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.||+|++.....++ .+.+.+.|+| ||.+++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 69999988765543 4457789999 8888874
No 93
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.36 E-value=1.2e-11 Score=88.67 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=98.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI-- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~-- 71 (180)
.+++.+||..|||.|.-...|++. +..++|+|+|+ +++.+.+ ..++++.++|+++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 466779999999999999999998 67899999976 7776511 357899999998722
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+.||+|+=..++.-++...+.++.+.+.++|+| ||.+++.....+.... . .+....+.
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~----------------~-GPPf~v~~ 172 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEM----------------E-GPPFSVTE 172 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCS----------------S-SSS----H
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCC----------------C-CcCCCCCH
Confidence 269999999999999999999999999999999 8886666554332211 0 11123577
Q ss_pred HHHHHHHHHcCCeEEEEee
Q 030291 150 QEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~ 168 (180)
+++.+++. .+|++..+..
T Consensus 173 ~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 173 EEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHhc-CCcEEEEEec
Confidence 89999998 8888776653
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.35 E-value=5.7e-12 Score=94.35 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=85.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-CCCccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-IPPSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-~~~~D~v~~~~~l~ 84 (180)
.++.+|||+|||+|.++..+++.. ..+++++|+++ +++.+++ ..++.+...+.... ..+||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 467899999999999998877653 45899999966 8887764 23455666554232 23699999976543
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
....++.++.+.|+| ||.++++.... ...+++.+.+++. |+++
T Consensus 237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~~----------------------------~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKP---GGWLILSGILE----------------------------TQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred -----HHHHHHHHHHHHcCC---CcEEEEEeCcH----------------------------hHHHHHHHHHHcc-Ccee
Confidence 234789999999999 99998866321 1235566677665 8877
Q ss_pred EEeecCCc
Q 030291 165 KIAPIFGI 172 (180)
Q Consensus 165 ~~~~~~~~ 172 (180)
++....++
T Consensus 280 ~~~~~~~W 287 (288)
T TIGR00406 280 EIRQREEW 287 (288)
T ss_pred eEeccCCC
Confidence 77665543
No 95
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=8e-12 Score=93.07 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=90.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~D~v~~~~~l 83 (180)
..++.+|||+|||+|.++...++.. -.+++++|+.+ +++.++. ..++.+. ...+ ....||+|++|-..
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILA 235 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-H
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCH
Confidence 4567899999999999999988884 23799999954 7777764 3455442 1112 22579999986553
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.....++..+.+.|+| ||.++++..... ..+++.+.+++ ||++
T Consensus 236 -----~vL~~l~~~~~~~l~~---~G~lIlSGIl~~----------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 236 -----DVLLELAPDIASLLKP---GGYLILSGILEE----------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp -----HHHHHHHHHCHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHT-TEEE
T ss_pred -----HHHHHHHHHHHHhhCC---CCEEEEccccHH----------------------------HHHHHHHHHHC-CCEE
Confidence 3344788889999999 888888765321 23667788877 9999
Q ss_pred EEEeecCCceeEEEEeC
Q 030291 164 YKIAPIFGIKSLIEVYP 180 (180)
Q Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (180)
++.....++.++...+|
T Consensus 279 ~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 279 VEEREEGEWVALVFKKK 295 (295)
T ss_dssp EEEEEETTEEEEEEEE-
T ss_pred EEEEEECCEEEEEEEeC
Confidence 99999888877766553
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.35 E-value=4.1e-11 Score=82.45 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=81.0
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIPPS 74 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~~~ 74 (180)
.++++. +.++++++|||||+|..+..++...|..+++++|-.+ +++..++ -+|++++.++.-+ ..+++
T Consensus 26 ~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 26 TLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 345566 7889999999999999999999889999999999843 6655543 6899999999855 34479
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|.||..+. . +.+ .+|+.+...|+| ||++++..
T Consensus 104 daiFIGGg-~---~i~--~ile~~~~~l~~---ggrlV~na 135 (187)
T COG2242 104 DAIFIGGG-G---NIE--EILEAAWERLKP---GGRLVANA 135 (187)
T ss_pred CEEEECCC-C---CHH--HHHHHHHHHcCc---CCeEEEEe
Confidence 99999887 3 223 789999999999 88888854
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.34 E-value=4e-11 Score=92.68 Aligned_cols=131 Identities=16% Similarity=0.229 Sum_probs=91.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-C---CCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-I---PPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-~---~~~D~v~~~~~l 83 (180)
++..+|||+|||+|.++..++...|..+++++|+++ +++.+++ ..++++.++|+.+. . ..||+|+++=-.
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 455699999999999999999988899999999966 8888875 34789999998653 1 259999995321
Q ss_pred cc-----CC----------------h--HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe
Q 030291 84 HF-----FD----------------D--EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF 140 (180)
Q Consensus 84 ~~-----~~----------------~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (180)
.. .. + .-.+.+++.+.+.|+| ||.+++ +...
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lil-EiG~---------------------- 383 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLL-EHGF---------------------- 383 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEE-EECc----------------------
Confidence 00 00 0 1133667777889999 776654 2211
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEeec-CCceeEE
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAPI-FGIKSLI 176 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~-~~~~~~~ 176 (180)
...+.+.+++++.||..+++... .+...++
T Consensus 384 ------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v 414 (423)
T PRK14966 384 ------DQGAAVRGVLAENGFSGVETLPDLAGLDRVT 414 (423)
T ss_pred ------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEE
Confidence 13467888899999987776554 4444444
No 98
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=3.8e-11 Score=85.24 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=74.0
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C-CC
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I-PP 73 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~-~~ 73 (180)
..+. +.++.+|||+|||+|.++..++.. .+..+++++|.++ +++.+++ ..++++..+|..+. . +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3444 678889999999999999988776 4567899999955 8876653 35788888888542 2 46
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
||.|++.... .+. ..+++.+.+.|+| ||.+++
T Consensus 112 ~D~V~~~~~~---~~~--~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 112 FDRIFIGGGS---EKL--KEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCEEEECCCc---ccH--HHHHHHHHHHcCC---CcEEEE
Confidence 9999985421 223 3789999999999 888876
No 99
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.1e-11 Score=86.76 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=84.8
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC-Ccc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP-PSD 75 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~-~~D 75 (180)
.|++.++ .....+|||+|||.|.++..+++..|..+++.+|.+. +++.+++ ..+..+...|..++.. +||
T Consensus 149 lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 149 LLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 3555666 4545599999999999999999999999999999977 7888875 2333567788766544 699
Q ss_pred EEEeccccccCChH---HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 76 AFFFKTVFHFFDDE---DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 76 ~v~~~~~l~~~~~~---~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|+++=-+|--.+. -..++++...+.|++ ||.+.++..
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 99999888744332 233789999999999 999999875
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2e-11 Score=90.31 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=93.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCee----EEecCCcc-cC-CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLK----YIEGDMFQ-FI-PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~----~~~~d~~~-~~-~~~D~v~~~~~ 82 (180)
..++.++||+|||+|.++.+.++.. -.+++++|+.+ +++.++. ..++. ....+... .. .+||+|++|=.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 4689999999999999999999885 33699999955 7777764 22222 22222222 22 36999999763
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
- .....+...+.+.++| ||.++++..... ..+...+.++++||+
T Consensus 239 A-----~vl~~La~~~~~~lkp---gg~lIlSGIl~~----------------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 239 A-----EVLVELAPDIKRLLKP---GGRLILSGILED----------------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred H-----HHHHHHHHHHHHHcCC---CceEEEEeehHh----------------------------HHHHHHHHHHhCCCe
Confidence 2 2334789999999999 899999764221 136677899999999
Q ss_pred EEEEeecCCceeEEEE
Q 030291 163 HYKIAPIFGIKSLIEV 178 (180)
Q Consensus 163 ~~~~~~~~~~~~~~~~ 178 (180)
+++......+.++...
T Consensus 283 v~~~~~~~eW~~i~~k 298 (300)
T COG2264 283 VVEVLEREEWVAIVGK 298 (300)
T ss_pred EeEEEecCCEEEEEEE
Confidence 9999998777666543
No 101
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.32 E-value=3.3e-11 Score=90.12 Aligned_cols=94 Identities=16% Similarity=0.344 Sum_probs=73.0
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEec------
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFK------ 80 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~------ 80 (180)
.+|||+|||+|.++..++..+++.+++++|++. ++..+++ ..+++++++|+.+..+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 689999999999999999999889999999965 8877764 2459999999977543 59999986
Q ss_pred -------cccccCCh----------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 81 -------TVFHFFDD----------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 81 -------~~l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+..|-|. .....+++++.+.|+| ||.+++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 12222221 1345788999999999 776655
No 102
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.31 E-value=2.8e-11 Score=86.84 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=84.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------CCCeeEEecCCcccC---
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------TDNLKYIEGDMFQFI--- 71 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------~~~~~~~~~d~~~~~--- 71 (180)
+++.+||..|||.|..+..|++. +.+++++|+|+ .++.+.+ ..++++.++|+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 35689999999999999999998 66799999977 7766421 458999999998732
Q ss_pred ---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 72 ---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 72 ---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+.||+|+-..++.++++..+.++.+.+.++|+| ||.+++....
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~ 165 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVME 165 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEe
Confidence 369999999999999999999999999999999 8988887653
No 103
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.31 E-value=3.4e-11 Score=86.79 Aligned_cols=143 Identities=17% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccC-CCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFI-PPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~~~~~~~ 92 (180)
...++||||+|.|..+..++..+.. +++.|.|. |..+.++ .+++.+..+-.... ..||+|.|..+|....++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~-- 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL-- 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHH--
Confidence 4578999999999999999999766 99999987 7665554 45555544433332 3699999999999999998
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhh--ccceeeEeecCCc--ccCHHHHHHHHHHcCCeEEEEee
Q 030291 93 KLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKL--LFDIFMNFNVGGK--ERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
.+|+.++++|+| +|.++++-..+-.+ .. +... ...........+. .-....+.+.|+.+||+++....
T Consensus 169 ~LL~~i~~~l~p---~G~lilAvVlP~~p-yV----E~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILAVVLPFRP-YV----EFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEEEEecccc-cE----EcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 889999999999 78888865432211 10 0000 0000000000111 11234455889999999988875
Q ss_pred cC
Q 030291 169 IF 170 (180)
Q Consensus 169 ~~ 170 (180)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 54
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.30 E-value=2.3e-11 Score=90.79 Aligned_cols=96 Identities=18% Similarity=0.355 Sum_probs=73.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEecc---
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKT--- 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~--- 81 (180)
++.+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..+++++++|+.+..+ .||+|+++=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 45789999999999999999999889999999966 8887764 2478999999866443 599999861
Q ss_pred ---ccc-------cCCh----------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 82 ---VFH-------FFDD----------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 82 ---~l~-------~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+. |-+. .....+++.+.+.|+| ||.+++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 111 1111 1235779999999999 777665
No 105
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.29 E-value=1.9e-11 Score=93.87 Aligned_cols=99 Identities=11% Similarity=0.175 Sum_probs=75.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC--CCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI--PPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~--~~~D~v~~~~ 81 (180)
.....+||||||+|.++..++...|+..++|+|++. ++..+.+ ..|+.++++|+.. .. .++|.|++++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 445689999999999999999999999999999965 7776653 4689999999843 22 3699999865
Q ss_pred ccccCChH----HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDE----DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~----~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..-+.... ....+++++.++|+| ||.+.+..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKP---GGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCC---CcEEEEEE
Confidence 43221111 124789999999999 89888865
No 106
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.28 E-value=7.9e-12 Score=88.66 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=70.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC--c-----c---cCCCccEEEecccccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM--F-----Q---FIPPSDAFFFKTVFHF 85 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~--~-----~---~~~~~D~v~~~~~l~~ 85 (180)
+.++|+|||+|..+..+++.+.. ++++|+++ |++.+++..++++...-. . + ...+.|+|++..++|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW 112 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence 37899999999999989998765 99999976 999999866665554322 1 1 1236999999999998
Q ss_pred CChHHHHHHHHHHHHhhccCCCCc-EEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERG-KVLIID 115 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G-~~~~~~ 115 (180)
+..+ .+.+.+.++||+ .| .+.+=.
T Consensus 113 Fdle---~fy~~~~rvLRk---~Gg~iavW~ 137 (261)
T KOG3010|consen 113 FDLE---RFYKEAYRVLRK---DGGLIAVWN 137 (261)
T ss_pred hchH---HHHHHHHHHcCC---CCCEEEEEE
Confidence 8766 889999999999 55 544433
No 107
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.28 E-value=2.2e-11 Score=82.89 Aligned_cols=124 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccC---CCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFI---PPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~---~~~D~v~~~~~l 83 (180)
...+|||+|||.|.+...|++..-....+++|.++ +++-|+. ...|+|.+.|+.++. +.||+|+-.+++
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 34499999999999999999885344589999976 7766653 344999999998742 359998876655
Q ss_pred ccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 84 HFFD------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 84 ~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
..+. +.....++..+.+.|+| ||.++|..++ +|.+|+.+.++
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~ 194 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFE 194 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHh
Confidence 4431 12224678899999999 8888886532 46688888888
Q ss_pred HcCCeEEEEeecC
Q 030291 158 NAGFTHYKIAPIF 170 (180)
Q Consensus 158 ~aGf~~~~~~~~~ 170 (180)
..||+....+..+
T Consensus 195 ~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 195 NFNFEYLSTVPTP 207 (227)
T ss_pred cCCeEEEEeeccc
Confidence 8888876655443
No 108
>PRK14967 putative methyltransferase; Provisional
Probab=99.28 E-value=1.1e-10 Score=84.45 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=72.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccC--CCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFI--PPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~--~~~D~v~~~~~l~ 84 (180)
+.+..+|||+|||+|.++..+++.. ..+++++|+++ ++..+++ ..++++..+|+.+.. ..||+|+++-...
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4567899999999999999888763 34899999965 7776654 235788888886533 3699999974322
Q ss_pred cCCh-------------------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDD-------------------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~-------------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.... .....+++++.++|+| ||.+++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~ 160 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQS 160 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEe
Confidence 1111 1134678899999999 899887643
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=4.3e-11 Score=84.81 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=75.6
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC-CC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI-PP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~-~~ 73 (180)
+++.+. ..++.+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..++++..+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 5678899999999999999998888888999999955 8777764 3578999988854 22 34
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|.++.... .+ ...+++++.+.|+| ||.+++...
T Consensus 110 ~d~v~~~~~----~~--~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEGG----RP--IKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCEEEEECC----cC--HHHHHHHHHHhcCC---CeEEEEEee
Confidence 677655321 12 34789999999999 888888754
No 110
>PRK04457 spermidine synthase; Provisional
Probab=99.25 E-value=3.7e-11 Score=88.67 Aligned_cols=98 Identities=17% Similarity=0.319 Sum_probs=74.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-------CCCeeEEecCCccc----CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-------TDNLKYIEGDMFQF----IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-------~~~~~~~~~d~~~~----~~~~D~v~~~~ 81 (180)
+.+.+|||||||+|.++..+++..|..+++++|++ ++++.+++ .++++++.+|..+. ...||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45789999999999999999999999999999994 48777764 36899999998542 23699999753
Q ss_pred cc-ccCCh-HHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 VF-HFFDD-EDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~l-~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.- ...+. ....++++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 11 11111 1124899999999999 7887774
No 111
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.24 E-value=3e-10 Score=91.09 Aligned_cols=123 Identities=15% Similarity=0.331 Sum_probs=88.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEeccc--
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKTV-- 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~~-- 82 (180)
++.+|||+|||+|.++..++...|+.+++++|+++ +++.+++ ..++++.++|+.+..+ .||+|+++--
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 34689999999999999999998899999999966 8887764 2478999999866443 5999998421
Q ss_pred ------------cccCCh----------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEe
Q 030291 83 ------------FHFFDD----------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNF 140 (180)
Q Consensus 83 ------------l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (180)
..|-+. .....+++.+.+.|+| ||.+++ +...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~---------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF---------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC----------------------
Confidence 111111 1234578888999999 887765 3210
Q ss_pred ecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 141 NVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
...+.+.+++++.||..+++...
T Consensus 272 ------~q~~~v~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 272 ------KQEEAVTQIFLDHGYNIESVYKD 294 (506)
T ss_pred ------chHHHHHHHHHhcCCCceEEEec
Confidence 12356778888889887766544
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=5.6e-11 Score=89.59 Aligned_cols=94 Identities=19% Similarity=0.360 Sum_probs=72.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--CccEEEecc-----
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--PSDAFFFKT----- 81 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~~D~v~~~~----- 81 (180)
.+|||+|||+|.++..++..+|+.+++++|+++ +++.+++ ..++++.++|+.+..+ .||+|+++=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 689999999999999999999999999999966 8887764 2469999999866443 599999861
Q ss_pred -cc-------ccCCh----------HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 82 -VF-------HFFDD----------EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 82 -~l-------~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+ +|-+. .....+++++.+.|+| ||.+++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 11 11111 1234789999999999 777766
No 113
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.24 E-value=2e-10 Score=80.94 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=70.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------C--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------I--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~--~~~D~v~~~ 80 (180)
++++.+|||+|||+|.++..+++.+ +..+++++|++++. ...++++.++|+.+. . ..+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 5778899999999999999988875 55689999997633 235678888887541 1 259999986
Q ss_pred ccccc-----CCh----HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHF-----FDD----EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~-----~~~----~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
...+. ... .....++..+.++|+| ||.+++..
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~~ 146 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVKV 146 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 54221 111 1234789999999999 88888853
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.23 E-value=5.4e-11 Score=85.35 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=71.9
Q ss_pred cccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC---CCcc
Q 030291 6 VKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI---PPSD 75 (180)
Q Consensus 6 ~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~---~~~D 75 (180)
++.+. ..+..+|||+|||+|..+..+++.. .+++++|.++ ++..+++ ..++++..+|..+.. ..||
T Consensus 71 ~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 71 TELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred HHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcC
Confidence 34444 5678899999999999998877774 3799999965 7776654 346899999985532 3699
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+|++...++++ .+.+.+.|+| ||.+++.-
T Consensus 147 ~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 147 RILVTAAAPEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred EEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence 99998776544 4557789999 88888754
No 115
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.23 E-value=5.5e-11 Score=77.22 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=72.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-----CCCccEEEeccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-----IPPSDAFFFKTV 82 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-----~~~~D~v~~~~~ 82 (180)
+.+|||+|||+|.++..+++.. ..+++++|+++ .++.++. ..++++.++|..+. .++||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 3589999999999999999997 68999999955 6666653 46899999999652 246999999765
Q ss_pred cccCC------hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFD------DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~------~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..... ......+++++.+.|+| ||.+++.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 44321 11234889999999999 88887754
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.22 E-value=8.6e-11 Score=73.83 Aligned_cols=92 Identities=25% Similarity=0.420 Sum_probs=72.9
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC------CCCCeeEEecCCccc----CCCccEEEeccccccC
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP------QTDNLKYIEGDMFQF----IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~------~~~~~~~~~~d~~~~----~~~~D~v~~~~~l~~~ 86 (180)
+++|+|||.|..+..+++ .+..+++++|+++ ....++ ...++++...|..+. .+.+|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999888 5578999999965 555554 256788889888663 2369999999999884
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
......+++.+.+.++| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 33344889999999999 8888775
No 117
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=1.9e-10 Score=81.77 Aligned_cols=144 Identities=10% Similarity=0.181 Sum_probs=90.3
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----C-----------------------------
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----T----------------------------- 57 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~----------------------------- 57 (180)
.+-.+..+|||||..|.++..+++.+....+.|+|+.. .++.|++ .
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 34567889999999999999999999777899999955 7777764 0
Q ss_pred ---------------CCeeEEecCCcc-cCCCccEEEeccccc----cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 58 ---------------DNLKYIEGDMFQ-FIPPSDAFFFKTVFH----FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 58 ---------------~~~~~~~~d~~~-~~~~~D~v~~~~~l~----~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.|+.+...|+++ ..+.||+|+|.++-. .+.|+....+++++.+.|.| ||.+++ ++
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---gGiLvv-EP- 209 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---GGILVV-EP- 209 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---CcEEEE-cC-
Confidence 111111122221 234699999865432 34678889999999999999 555555 42
Q ss_pred eCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHc--CCeEEE
Q 030291 118 IDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNA--GFTHYK 165 (180)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~~~ 165 (180)
.++ ..+.......+.... ....-...++.+.+++.+. ||+-++
T Consensus 210 --QpW--ksY~kaar~~e~~~~-ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 210 --QPW--KSYKKAARRSEKLAA-NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --Cch--HHHHHHHHHHHHhhc-CccceecCHHHHHhhhhhhhhheeeec
Confidence 221 112222222211111 1111345788899998887 565443
No 118
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.22 E-value=8.7e-11 Score=89.62 Aligned_cols=122 Identities=17% Similarity=0.051 Sum_probs=86.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc-cC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ-FI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~-~~--~~~D~v~~~~~ 82 (180)
.+++.+|||+|||+|.++...+.. +.+++++|++. |+..++. ..++.+.++|+.+ +. ..||+|+++-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 567889999999999998776654 67899999965 8776653 2347888999865 22 36999999632
Q ss_pred cc-------cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 83 FH-------FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 83 l~-------~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
.. +.......++++++.++|+| ||++++..+. ..++.+.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence 11 11112245889999999999 8988875421 1235567
Q ss_pred HHHcCCeEEEEeecCC
Q 030291 156 FVNAGFTHYKIAPIFG 171 (180)
Q Consensus 156 l~~aGf~~~~~~~~~~ 171 (180)
++++|| ++......-
T Consensus 304 ~~~~g~-i~~~~~~~~ 318 (329)
T TIGR01177 304 AEDAFR-VVKRFEVRV 318 (329)
T ss_pred HhhcCc-chheeeeee
Confidence 888899 776665533
No 119
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.9e-11 Score=83.33 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=78.3
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC------CCCeeEEecCCccc---CCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ------TDNLKYIEGDMFQF---IPP 73 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~~~~~~~d~~~~---~~~ 73 (180)
.+++.+. ++++.+|||||||+|+.+.-+++... +++.+|. ++..+.|++ ..|+.+.++|-..- .+.
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3556666 78899999999999999999999853 7999998 446777764 56799999999653 346
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
||.|++......+|.. +.+.|++ ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhccc---CCEEEEEEc
Confidence 9999999998877765 4568999 899888553
No 120
>PRK00811 spermidine synthase; Provisional
Probab=99.20 E-value=1.3e-10 Score=86.80 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=74.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------CCCeeEEecCCccc----CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------TDNLKYIEGDMFQF----IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~~~~~~~~~d~~~~----~~~~D~v 77 (180)
+++.+||+||||+|..+..+++..+..+++++|+++ +++.+++ .++++++.+|.... ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 467899999999999999998875567899999955 8877764 35789999998652 2369999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 78 FFKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 78 ~~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++...-.+.+.. ...++++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 986543332222 134889999999999 7776653
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.20 E-value=4.8e-10 Score=82.35 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcccC-----CCccEEEecccc---
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQFI-----PPSDAFFFKTVF--- 83 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~~~-----~~~D~v~~~~~l--- 83 (180)
..+|||+|||+|.++..+++..++.+++++|+++ +++.+++ ..+.++.++|+.+.. +.||+|+++=-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 4589999999999999999988888999999965 8887775 233678899986532 359999986321
Q ss_pred ---ccCChH------------------HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 ---HFFDDE------------------DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ---~~~~~~------------------~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...++. ....+++.+.+.|+| ||.+++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 111111 134778888899999 8887763
No 122
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.15 E-value=6.6e-11 Score=83.40 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcccHHH--H--HHHHH----CC-CCeEEEeeCch-hhccCCC----------------------------
Q 030291 15 GLRSMVDVGGGTGAFA--R--IISEA----FP-GIKCTVLDLPH-AVTDMPQ---------------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~--~--~l~~~----~~-~~~~~~~D~~~-~~~~a~~---------------------------- 56 (180)
..-+|+..||++|.=. . .+.+. .+ ..++++.|++. +++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999632 2 23331 12 46899999966 8888862
Q ss_pred ------CCCeeEEecCCcc-cC--CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 57 ------TDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 57 ------~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..+++|...|..+ .. +.||+|+|..++-|+.++.+.++++++.+.|+| ||.+++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3679999999977 22 269999999999999999999999999999999 7777774
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.13 E-value=8.2e-11 Score=83.79 Aligned_cols=99 Identities=13% Similarity=0.202 Sum_probs=71.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC---C
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI---P 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~---~ 72 (180)
.+++.+. ++++.+|||||||+|+.+..++... +..+++++|..+ ..+.|++ ..++.+.++|..... .
T Consensus 63 ~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a 140 (209)
T PF01135_consen 63 RMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA 140 (209)
T ss_dssp HHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred HHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence 4566676 8899999999999999999998874 445789999854 7777764 568999999986532 3
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||.|++......++.. +.+.|++ ||++++.-
T Consensus 141 pfD~I~v~~a~~~ip~~--------l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPEA--------LLEQLKP---GGRLVAPI 172 (209)
T ss_dssp SEEEEEESSBBSS--HH--------HHHTEEE---EEEEEEEE
T ss_pred CcCEEEEeeccchHHHH--------HHHhcCC---CcEEEEEE
Confidence 69999999888655433 5667999 78777743
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3e-09 Score=79.22 Aligned_cols=122 Identities=17% Similarity=0.276 Sum_probs=86.5
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----C-CCeeEEecCCcccCC-CccEEEecc--cccc--
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----T-DNLKYIEGDMFQFIP-PSDAFFFKT--VFHF-- 85 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~-~~~~~~~~d~~~~~~-~~D~v~~~~--~l~~-- 85 (180)
+|||+|||+|..+..++...|.++++++|++. +++.|++ . .++.++.+|.++... .||+|++|= .-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 79999999999999999999999999999965 8877764 2 456677778877554 699999851 1111
Q ss_pred -C-C---------------h--HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcc
Q 030291 86 -F-D---------------D--EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKE 146 (180)
Q Consensus 86 -~-~---------------~--~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
. + + .....++..+.+.|+| ||.+++ +.. .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~l-e~g----------------------------~ 240 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLIL-EIG----------------------------L 240 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEE-EEC----------------------------C
Confidence 1 0 0 1345678888889998 555444 321 1
Q ss_pred cCHHHHHHHHHHcC-CeEEEEeecCC
Q 030291 147 RTEQEWGSLFVNAG-FTHYKIAPIFG 171 (180)
Q Consensus 147 ~~~~~~~~~l~~aG-f~~~~~~~~~~ 171 (180)
...+.+.+++.+.| |..+.......
T Consensus 241 ~q~~~v~~~~~~~~~~~~v~~~~d~~ 266 (280)
T COG2890 241 TQGEAVKALFEDTGFFEIVETLKDLF 266 (280)
T ss_pred CcHHHHHHHHHhcCCceEEEEEecCC
Confidence 13477889999999 67666655533
No 125
>PRK03612 spermidine synthase; Provisional
Probab=99.11 E-value=1.3e-09 Score=87.74 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=73.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------------CCCeeEEecCCccc----CCCcc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------TDNLKYIEGDMFQF----IPPSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------~~~~~~~~~d~~~~----~~~~D 75 (180)
+++++|||||||+|..+..+++..+..+++.+|+++ +++.+++ .++++++.+|..+. ..+||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 567899999999999999988754337999999955 8887765 25789999998652 23699
Q ss_pred EEEeccccccCCh---HHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 76 AFFFKTVFHFFDD---EDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 76 ~v~~~~~l~~~~~---~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+|++...-...+. ....++++.+++.|+| ||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 9999754322221 1123689999999999 7777664
No 126
>PRK01581 speE spermidine synthase; Validated
Probab=99.10 E-value=6.6e-10 Score=84.46 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------------CCCeeEEecCCccc----CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------TDNLKYIEGDMFQF----IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------~~~~~~~~~d~~~~----~~~~ 74 (180)
..++.+||+||||+|..++.+++..+..+++.+|+++ +++.|++ .++++++.+|..+. ...|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3567899999999999999888876667999999955 8887763 46899999998662 2369
Q ss_pred cEEEecccc---ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 75 DAFFFKTVF---HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 75 D~v~~~~~l---~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
|+|++...- .........++++.+++.|+| ||.++..
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999986421 111222335799999999999 7776654
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=3.6e-10 Score=85.48 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=69.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~~~ 81 (180)
++++.+|||||||+|.++..+++..+. ..++++|.++ +++.+++ ..++.+.++|..+. ...||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 567789999999999999999888643 4799999965 7776653 35788899987542 23699999976
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+.++ ...+.+.|+| ||.+++..
T Consensus 158 g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 65533 3346678999 89887753
No 128
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=4.5e-11 Score=84.37 Aligned_cols=143 Identities=16% Similarity=0.204 Sum_probs=98.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCC--C--CeeEEecCCcc---cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQT--D--NLKYIEGDMFQ---FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~--~--~~~~~~~d~~~---~~~~~D~v~~~~~l~ 84 (180)
.+....++|||||.|.....+.... --+++-+|.|. |++.++.. + .....++|... ...++|+|+++..+|
T Consensus 70 kk~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 70 KKSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh
Confidence 3556789999999999999998885 44689999977 99999862 3 34566666622 223699999999999
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-----cC-CcccCHHHHHHHHHH
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-----VG-GKERTEQEWGSLFVN 158 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~l~~ 158 (180)
+..+.. ..+.+|..+||| +|.++ ......+. +++.+....+..+.. .+ ..+....++..+|..
T Consensus 149 W~NdLP--g~m~~ck~~lKP---Dg~Fi-asmlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 149 WTNDLP--GSMIQCKLALKP---DGLFI-ASMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hhccCc--hHHHHHHHhcCC---Cccch-hHHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhh
Confidence 998877 779999999999 55544 33333332 223322222211111 11 234456889999999
Q ss_pred cCCeEEEEe
Q 030291 159 AGFTHYKIA 167 (180)
Q Consensus 159 aGf~~~~~~ 167 (180)
|||....+.
T Consensus 218 AGF~m~tvD 226 (325)
T KOG2940|consen 218 AGFSMLTVD 226 (325)
T ss_pred cCcccceec
Confidence 999876654
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.07 E-value=4.9e-10 Score=77.59 Aligned_cols=80 Identities=19% Similarity=0.412 Sum_probs=62.6
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCccc-CC--
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF-IP-- 72 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~-~~-- 72 (180)
+++.+++.+. +.++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..+++++++|+.+. .+
T Consensus 1 ~~~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 1 VIDKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred CHHHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcccc
Confidence 3456777777 778889999999999999999988 56899999965 7777654 35799999999662 22
Q ss_pred CccEEEeccccc
Q 030291 73 PSDAFFFKTVFH 84 (180)
Q Consensus 73 ~~D~v~~~~~l~ 84 (180)
.+|.|+++-..+
T Consensus 77 ~~d~vi~n~Py~ 88 (169)
T smart00650 77 QPYKVVGNLPYN 88 (169)
T ss_pred CCCEEEECCCcc
Confidence 489998875543
No 130
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.04 E-value=1.4e-09 Score=80.77 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=72.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++.+||+||||+|..+..+++..+..+++++|+++ +++.+++ ..++++...|.... ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 456799999999999999888876567899999965 7666653 25788888887542 34699999
Q ss_pred eccccccCChH--HHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+.......+.. ...++++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 86542222221 135889999999999 7887775
No 131
>PLN02672 methionine S-methyltransferase
Probab=99.04 E-value=2.4e-09 Score=91.54 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=54.1
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------------------CCCeeEEecCCcccCC
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------------------TDNLKYIEGDMFQFIP 72 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------------------~~~~~~~~~d~~~~~~ 72 (180)
+.+|||+|||+|.++..+++.++..+++++|++. +++.+++ ..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999999888999999966 8877743 1369999999977442
Q ss_pred ----CccEEEec
Q 030291 73 ----PSDAFFFK 80 (180)
Q Consensus 73 ----~~D~v~~~ 80 (180)
.||+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 49999985
No 132
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.02 E-value=3e-09 Score=78.20 Aligned_cols=97 Identities=15% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCeEEEeCCcccH----HHHHHHHHCC-----CCeEEEeeCch-hhccCCC----------------------------
Q 030291 15 GLRSMVDVGGGTGA----FARIISEAFP-----GIKCTVLDLPH-AVTDMPQ---------------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~----~~~~l~~~~~-----~~~~~~~D~~~-~~~~a~~---------------------------- 56 (180)
..-+|...||++|. ++..+.+.++ ..++++.|++. +++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47799999999995 3444455554 57899999966 8888863
Q ss_pred -------CCCeeEEecCCcccC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 57 -------TDNLKYIEGDMFQFI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 57 -------~~~~~~~~~d~~~~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...|.|...|..++. +.||+|+|..++-|+..+.+.+++.+.+..|+| ||.+++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 245778888886633 259999999999999999999999999999999 8888874
No 133
>PLN02366 spermidine synthase
Probab=99.01 E-value=3e-09 Score=80.10 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=72.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc---c--CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ---F--IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~---~--~~~~D~v 77 (180)
+++.+||+||||.|..++.+++..+..+++.+|+.+ +++.+++ .+|++++.+|... . ...||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 578999999999999999998775456899999965 7777664 3589999999743 2 2369999
Q ss_pred EeccccccCChH--HHHHHHHHHHHhhccCCCCcEEEE
Q 030291 78 FFKTVFHFFDDE--DCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 78 ~~~~~l~~~~~~--~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++...-...+.. ...++++.+++.|+| ||.++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985443222221 234789999999999 777755
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=4.1e-09 Score=83.14 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=77.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCccc-----CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQF-----IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~-----~~~~D~v~~~~ 81 (180)
..++.+|||+|||+|..+..+++..++.+++++|.++ ++..+++ ..++++.++|..+. ..+||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 4577899999999999999999987667999999965 8877764 23478888998542 13599999532
Q ss_pred ------ccccCC-------h-------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 82 ------VFHFFD-------D-------EDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 82 ------~l~~~~-------~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
++.+-+ . ..+.++|.++.++|+| ||.++++.+....
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~~~ 377 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSILP 377 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 121111 1 1234789999999999 9999988764433
No 135
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.00 E-value=1.8e-09 Score=80.34 Aligned_cols=97 Identities=14% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCeEEEeCCcccHH--HH--HHHHHCC----CCeEEEeeCch-hhccCCC-----------------------------
Q 030291 15 GLRSMVDVGGGTGAF--AR--IISEAFP----GIKCTVLDLPH-AVTDMPQ----------------------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~--~~--~l~~~~~----~~~~~~~D~~~-~~~~a~~----------------------------- 56 (180)
+.-+|+..||++|.- +. .+.+..+ ..+++++|++. +++.|++
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999963 22 2334322 46899999966 8888863
Q ss_pred --------CCCeeEEecCCcc-cC---CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 57 --------TDNLKYIEGDMFQ-FI---PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 57 --------~~~~~~~~~d~~~-~~---~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
...++|.+.|..+ +. +.||+|+|..++.|+.++.+.++++++.++|+| ||.+++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1446777778866 22 369999999999999998889999999999999 8877664
No 136
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.00 E-value=1.8e-08 Score=70.67 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=77.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cCC--CccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FIP--PSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~~--~~D~v~~~~~l~~~~~~ 89 (180)
.++...|.|+|||.+.++..+. ....+..+|+-.. .+ .+..+|+.. |++ ..|++++...|.- .
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~------n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---T 135 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP------NP--RVTACDIANVPLEDESVDVAVFCLSLMG---T 135 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S------ST--TEEES-TTS-S--TT-EEEEEEES---S---S
T ss_pred cCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC------CC--CEEEecCccCcCCCCceeEEEEEhhhhC---C
Confidence 3456789999999999996653 2346899997321 12 245677743 433 5999887666542 2
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+..++.+..|+||| ||.+.|++... ++.+.+.+.+.+++.||+.......
T Consensus 136 n~~~fi~EA~RvLK~---~G~L~IAEV~S--------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 136 NWPDFIREANRVLKP---GGILKIAEVKS--------------------------RFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEEEGG--------------------------G-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred CcHHHHHHHHheecc---CcEEEEEEecc--------------------------cCcCHHHHHHHHHHCCCeEEecccC
Confidence 344899999999999 89999987421 3346788999999999999887766
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
.....++++.|
T Consensus 187 n~~F~~f~F~K 197 (219)
T PF05148_consen 187 NKHFVLFEFKK 197 (219)
T ss_dssp STTEEEEEEEE
T ss_pred CCeEEEEEEEE
Confidence 77777777653
No 137
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.5e-09 Score=76.19 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=82.3
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCccc--CCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQF--IPP 73 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~~--~~~ 73 (180)
|+.... +.++.+|+|.|.|+|.++..|+.. .|..+++.+|. .+..+.|++ ..++++..+|+.+. ...
T Consensus 86 I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 86 IVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 455666 899999999999999999999864 67789999999 447777764 45599999999763 236
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|+|+. -++++. .+++.+.++|+| ||.+.+..+.
T Consensus 164 vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ 197 (256)
T COG2519 164 VDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPT 197 (256)
T ss_pred cCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCC
Confidence 999988 567888 789999999999 8888886644
No 138
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.98 E-value=3.4e-09 Score=74.92 Aligned_cols=96 Identities=14% Similarity=0.249 Sum_probs=68.7
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc------cCCCccEEEecccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ------FIPPSDAFFFKTVF 83 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~------~~~~~D~v~~~~~l 83 (180)
..+||||||.|.+...+++..|+..++|+|+.. .+..+.+ ..|+.++++|+.. +..+.|.|+.++-=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 388999999999999999999999999999944 5555542 7899999999865 22368888874321
Q ss_pred ccCCh------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDD------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
=+... -....+++.+.+.|+| ||.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 11110 0234899999999999 88887754
No 139
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.97 E-value=6.2e-10 Score=78.16 Aligned_cols=96 Identities=13% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccC----CCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFI----PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~----~~~D~v~~~~~l~~~~~ 88 (180)
.+.-|||||||+|..+..+.+. +..++++|+|. |++.|.+ .-.-.+..+|+=+.. +.||.+|+.+++.++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 3788999999999999988887 56799999966 9999975 212356777774432 25999998877766532
Q ss_pred ---------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 89 ---------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 89 ---------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.....|+..++.+|++ |+..++.-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhcc---CceeEEEe
Confidence 3445778889999999 77777643
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.96 E-value=6.5e-09 Score=75.60 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=71.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
..++++|||||||+|..+..++... +..+++++|.++ +.+.+++ ..+++++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4568899999999999998888775 467999999954 7777764 46799999999652 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|+|+.... .+....++..+.+.|+| ||.+++-+
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~---GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKV---GGIIAFDN 178 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence 99988432 23334789999999999 66655543
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.94 E-value=4.5e-09 Score=76.52 Aligned_cols=100 Identities=14% Similarity=0.238 Sum_probs=74.5
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC---
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--- 71 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--- 71 (180)
|+..++ +.++++|||.|.|+|.++..|+.. .|.-+++.+|..+ ..+.|++ ..++++.+.|+.. -+
T Consensus 32 I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 32 ILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 455566 899999999999999999999865 6788999999944 7777764 5689999999954 12
Q ss_pred --CCccEEEeccccccCChHHHHHHHHHHHHhh-ccCCCCcEEEEEEe
Q 030291 72 --PPSDAFFFKTVFHFFDDEDCLKLLKKCREAI-ASNGERGKVLIIDI 116 (180)
Q Consensus 72 --~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L-~p~~~~G~~~~~~~ 116 (180)
..+|.|+. -++++. .++..+.++| ++ ||.+....+
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP 147 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSP 147 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEES
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECC
Confidence 35999887 567787 6799999999 88 888777653
No 142
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.94 E-value=1.2e-08 Score=71.94 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=87.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cCC-----CccEEEeccccccCChH
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FIP-----PSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~~-----~~D~v~~~~~l~~~~~~ 89 (180)
.-++|||||=+..+...- .+...++.+|+.+. .+ .+.+.|+++ +.| .||+|.++.+|.++|++
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 468999998765544332 23445899998431 11 225667766 333 59999999999999977
Q ss_pred H-HHHHHHHHHHhhccCCCCcE-----EEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 90 D-CLKLLKKCREAIASNGERGK-----VLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 90 ~-~~~~l~~~~~~L~p~~~~G~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
. +-+++.++.+.|+| +|. ++++-+... ..+.++.+.+.|.++++..||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEE
Confidence 6 45999999999999 888 777643221 12447778899999999999999
Q ss_pred EEEeecCC
Q 030291 164 YKIAPIFG 171 (180)
Q Consensus 164 ~~~~~~~~ 171 (180)
++.....-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88765543
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.94 E-value=6.5e-09 Score=82.03 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=77.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CC--CeeEEecCCccc-----CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TD--NLKYIEGDMFQF-----IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~--~~~~~~~d~~~~-----~~~~D~v~~ 79 (180)
..++.+|||+|||+|..+..+++..+..+++++|.++ ++..+++ .- ++.+..+|.... ...||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 4567899999999999999999887667999999965 7777654 11 233356666431 235999995
Q ss_pred ------ccccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 80 ------KTVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 80 ------~~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
.+++++.++. .+.++|.++.++||| ||.++.+++......
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~~E 375 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLPEE 375 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChhh
Confidence 2456555441 135899999999999 999999887665443
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=7.2e-09 Score=82.19 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C-CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I-PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~-~~~D~v~~~ 80 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|..+. . ..||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4567899999999999999998875 567999999965 7776653 24589999998542 2 369999974
Q ss_pred c------ccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 81 T------VFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 81 ~------~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
. ++.+-++. .+..+|+.+.++|+| ||.++.+....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 2 22221111 124689999999999 89988766544
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.91 E-value=8.1e-09 Score=81.86 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=64.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-------CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-------PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-------~~~D~v~ 78 (180)
..++.+|||+|||+|.++..+++.. .+++++|.++ +++.+++ ..++++.++|+.+.. ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 4567899999999999999998884 5899999976 8888874 357999999985421 2599998
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+.=--. .....++.+.+ ++| ++.++++
T Consensus 373 ~dPPr~-----g~~~~~~~l~~-~~~---~~ivyvS 399 (443)
T PRK13168 373 LDPPRA-----GAAEVMQALAK-LGP---KRIVYVS 399 (443)
T ss_pred ECcCCc-----ChHHHHHHHHh-cCC---CeEEEEE
Confidence 732211 11244555555 577 5666654
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.91 E-value=1.3e-08 Score=73.10 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC---CCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc--CCCccEEEeccccccC-
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF---PGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF--IPPSDAFFFKTVFHFF- 86 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~---~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~--~~~~D~v~~~~~l~~~- 86 (180)
...+|||+|||+|.++..+++.. +..+++++|+++ ++..+++ ..++.+.++|+... ...||+|+++=-+.-.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 36799999999999999988764 356899999965 8888876 45688999999652 2369999996332211
Q ss_pred ---------ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 87 ---------DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 87 ---------~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
...-...+++++.+++++ |.+++
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQ----GTFII 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCC----CEEEe
Confidence 112234688999997776 66655
No 147
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.90 E-value=1.1e-08 Score=68.90 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=86.9
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-CCCeeEEecCCcc--------cCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ--------FIP 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~--------~~~ 72 (180)
.+.+..+ ...+.-|||+|.|+|.++++++++. +....+.+|.+. ......+ .+...++.+|..+ ..+
T Consensus 39 ~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 39 KMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred HHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCC
Confidence 4455555 5667789999999999999999884 566789999954 5554444 6667788888865 234
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.||.|+|.--+-.++-....++|+.+...|.+ ||.++.....
T Consensus 117 ~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 117 FFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred eeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 59999999888889988888999999999999 8888887765
No 148
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.90 E-value=7.9e-09 Score=78.53 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------------C----CCeeEEecCCcc-------c
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------T----DNLKYIEGDMFQ-------F 70 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------~----~~~~~~~~d~~~-------~ 70 (180)
++.+|||+|||-|.-...+.... -..++|+|++. .++.|++ . -...+.++|... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78899999999888777777664 45799999965 7777753 1 234566776643 1
Q ss_pred CC--CccEEEeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 IP--PSDAFFFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 ~~--~~D~v~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ .||+|-|.+++||.- ....+.+|.++.+.|+| ||.++.+.+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEec
Confidence 12 699999999999874 34466799999999999 777766554
No 149
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=1.4e-08 Score=80.58 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=76.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC--CCccEEEec--
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI--PPSDAFFFK-- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~--~~~D~v~~~-- 80 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.++|..... ..||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 4567899999999999998888764 345899999966 8877764 246889999986532 359999962
Q ss_pred ----cccc-------cCChH-------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 81 ----TVFH-------FFDDE-------DCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 81 ----~~l~-------~~~~~-------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
+++. ++... .+..+|.++.++|+| ||.++.+++.....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~~~ 383 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIEPE 383 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCChh
Confidence 2221 11111 234689999999999 99999988665433
No 150
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.5e-08 Score=80.18 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=77.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC-------CCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI-------PPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~-------~~~D~v 77 (180)
..++.+|||+|||+|..+..+++.. +..+++++|.+. ++..+++ ..++++.++|..... ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 4567899999999999999998875 346899999965 7777754 346899999985421 259999
Q ss_pred Eec------cccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 78 FFK------TVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 78 ~~~------~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++. +++++-++. .+.++|.++.++||| ||.++.+++..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 962 355544431 135889999999999 99988877554
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=3.5e-08 Score=77.85 Aligned_cols=108 Identities=12% Similarity=0.161 Sum_probs=78.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
..++.+|||+|||+|..+..+++.. +..+++++|+++ +++.+++ ..++++.+.|.... ...||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999988875 456899999966 8877764 24678889988542 2359999962
Q ss_pred ------cccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCC
Q 030291 81 ------TVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123 (180)
Q Consensus 81 ------~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~ 123 (180)
+++..-++ ..+.++|.++.+.|+| ||.++.+.+.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~~eEn 374 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVTKEEN 374 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCChhhC
Confidence 22222121 1245789999999999 9998888776544433
No 152
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.84 E-value=2.1e-08 Score=69.64 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=64.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCccc-------CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQF-------IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~-------~~~~D~ 76 (180)
...+.+|||+|||+|..+..++...+..+++..|.++.++..+. ..++++...|.-++ ...||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999998888866789999998654444432 35667777665321 125999
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
|+.+.+++.- .....+++.+.+.|++ +|.+++.....
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 9999999864 3445889999999999 77777766544
No 153
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.84 E-value=3.2e-08 Score=73.29 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=75.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCCCccEEEec-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIPPSDAFFFK- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~~~D~v~~~- 80 (180)
..++.+|||+|||+|..+..+++... ...++++|.+. +++.+++ ..++.+.+.|... ..+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999888753 35899999965 7776654 3468888888743 22469999962
Q ss_pred -----cccccCChH--------------HHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 81 -----TVFHFFDDE--------------DCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 81 -----~~l~~~~~~--------------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
+++.+-++. .+.++|+.+.+.|+| ||.++.+......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~~ 204 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLEP 204 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCh
Confidence 222222211 234689999999999 8998887765443
No 154
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.83 E-value=4.9e-09 Score=77.40 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=61.5
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCCCccE
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIPPSDA 76 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~~~D~ 76 (180)
+.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+++ +++.+++ ..++++.++|+.+ +.+.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 34555555 667889999999999999999998 45799999965 7777654 3689999999976 4567899
Q ss_pred EEeccccc
Q 030291 77 FFFKTVFH 84 (180)
Q Consensus 77 v~~~~~l~ 84 (180)
|+++-..+
T Consensus 95 Vv~NlPy~ 102 (258)
T PRK14896 95 VVSNLPYQ 102 (258)
T ss_pred EEEcCCcc
Confidence 99876643
No 155
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.82 E-value=1e-07 Score=68.68 Aligned_cols=123 Identities=16% Similarity=0.154 Sum_probs=87.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cC--CCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FI--PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~--~~~D~v~~~~~l~~~~~~ 89 (180)
.+....|.|+|||.+.++. .. ...+..+|+-. .+-.+..+|+.+ ++ .+.|++++...|. ..
T Consensus 178 r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~CLSLM---gt 241 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVFCLSLM---GT 241 (325)
T ss_pred CcCceEEEecccchhhhhh---cc--ccceeeeeeec--------CCCceeeccccCCcCccCcccEEEeeHhhh---cc
Confidence 3566788999999998876 22 23488888632 123446677755 33 3699877755443 22
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
.+..++.++.++|++ ||.+++.+.- .++-+...+...+...||.+......
T Consensus 242 n~~df~kEa~RiLk~---gG~l~IAEv~--------------------------SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 242 NLADFIKEANRILKP---GGLLYIAEVK--------------------------SRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred cHHHHHHHHHHHhcc---CceEEEEehh--------------------------hhcccHHHHHHHHHHcCCeeeehhhh
Confidence 334899999999999 9999997732 13446677999999999999888877
Q ss_pred CCceeEEEEeC
Q 030291 170 FGIKSLIEVYP 180 (180)
Q Consensus 170 ~~~~~~~~~~~ 180 (180)
.....++++.+
T Consensus 293 n~~F~lfefkK 303 (325)
T KOG3045|consen 293 NKYFTLFEFKK 303 (325)
T ss_pred cceEEEEEEec
Confidence 77777777754
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.82 E-value=3.2e-08 Score=82.54 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------C-CCeeEEecCCcccC----CCccEEEecc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------T-DNLKYIEGDMFQFI----PPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~-~~~~~~~~d~~~~~----~~~D~v~~~~ 81 (180)
.+.+|||+|||+|.++..++... ..+++++|.++ +++.+++ . .+++++++|+.+.. ..||+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47899999999999999988863 33699999976 8888875 1 47899999986532 3699999842
Q ss_pred c-cc------cCC--hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 V-FH------FFD--DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~-l~------~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
- +. ... ......++..+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 1 00 000 12234678889999999 8877664
No 157
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.81 E-value=2.2e-08 Score=72.13 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=70.7
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-----CC-CeeEEecCCccc------CCCccEEEecccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-----TD-NLKYIEGDMFQF------IPPSDAFFFKTVF 83 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-----~~-~~~~~~~d~~~~------~~~~D~v~~~~~l 83 (180)
..+||||||.|.+...+++..|...++|+|+. ..+..+.+ .- |+.+++.|+... .++.|-|+.++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 47999999999999999999999999999993 34444432 34 899999998551 2268888874331
Q ss_pred ccCCh------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDD------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
=+... -....+++.+.+.|+| ||.+.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 11100 1234899999999999 88888864
No 158
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.81 E-value=1.3e-08 Score=72.35 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=71.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
..++++|||||+++|..+..+++..| +.+++.+|..+ ..+.|++ ..+++++.+|..+. .+.|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45788999999999999999998865 68999999944 7777754 46899999999652 1369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+|+.-.. ......++..+.+.|+| |+++++|.
T Consensus 123 D~VFiDa~-----K~~y~~y~~~~~~ll~~----ggvii~DN 155 (205)
T PF01596_consen 123 DFVFIDAD-----KRNYLEYFEKALPLLRP----GGVIIADN 155 (205)
T ss_dssp EEEEEEST-----GGGHHHHHHHHHHHEEE----EEEEEEET
T ss_pred eEEEEccc-----ccchhhHHHHHhhhccC----CeEEEEcc
Confidence 99998543 22334778899999999 66666654
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.80 E-value=3.8e-08 Score=70.18 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCc-hhhccCCC-------CCCeeEEe-cCCcc---c--CCCccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLP-HAVTDMPQ-------TDNLKYIE-GDMFQ---F--IPPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~-~~~~~a~~-------~~~~~~~~-~d~~~---~--~~~~D~v 77 (180)
..++++|||||.+.|.-+..++...| +.+++.+|.. ++...|++ ..++..+. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 46789999999999999999999987 7799999994 58888875 45688888 57755 2 3579999
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
|.-.. ......++..+.+.|+| |++++.|...
T Consensus 137 FIDad-----K~~yp~~le~~~~lLr~----GGliv~DNvl 168 (219)
T COG4122 137 FIDAD-----KADYPEYLERALPLLRP----GGLIVADNVL 168 (219)
T ss_pred EEeCC-----hhhCHHHHHHHHHHhCC----CcEEEEeecc
Confidence 98433 22334889999999999 5555555443
No 160
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=6.1e-09 Score=77.45 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=58.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---CCCeeEEecCCcc-cCCC--cc
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---TDNLKYIEGDMFQ-FIPP--SD 75 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---~~~~~~~~~d~~~-~~~~--~D 75 (180)
+.+++.+. +.++.+|||||||+|.++..+++..+ +++++|+++ +++.+++ ..+++++++|+.+ +.+. +|
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 34455555 66788999999999999999999964 799999965 8888765 3689999999965 2333 47
Q ss_pred EEEeccc
Q 030291 76 AFFFKTV 82 (180)
Q Consensus 76 ~v~~~~~ 82 (180)
.|+++--
T Consensus 108 ~vv~NlP 114 (272)
T PRK00274 108 KVVANLP 114 (272)
T ss_pred eEEEeCC
Confidence 7777643
No 161
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.77 E-value=3.4e-08 Score=72.15 Aligned_cols=141 Identities=20% Similarity=0.358 Sum_probs=80.4
Q ss_pred CCCeEEEeCCccc--HHHHHHHH-HCCCCeEEEeeCch-hhccCCC----CCC--eeEEecCCcccC-----C----Ccc
Q 030291 15 GLRSMVDVGGGTG--AFARIISE-AFPGIKCTVLDLPH-AVTDMPQ----TDN--LKYIEGDMFQFI-----P----PSD 75 (180)
Q Consensus 15 ~~~~iLdiG~G~G--~~~~~l~~-~~~~~~~~~~D~~~-~~~~a~~----~~~--~~~~~~d~~~~~-----~----~~D 75 (180)
+-...||||||.- .+++.+++ ..|.+++..+|... .+..++. ..+ ..++++|+.++. + -.|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 5678999999974 25555554 47999999999955 7777764 344 889999997631 1 133
Q ss_pred -----EEEeccccccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 76 -----AFFFKTVFHFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 76 -----~v~~~~~l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
.+++..++||++| .+-..++++++++|.| |.+++++.......... . ......+.........++.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~--~---~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPER--A---EALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHH--H---HHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHH--H---HHHHHHHHcCCCCceecCH
Confidence 6888999999987 4566899999999999 88888887655332211 1 1111222222344577899
Q ss_pred HHHHHHHHHcCCeEEE
Q 030291 150 QEWGSLFVNAGFTHYK 165 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~ 165 (180)
+++..+|. ||++++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999986 887654
No 162
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.74 E-value=4.1e-08 Score=72.36 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=57.4
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCCCcc-
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIPPSD- 75 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~~~D- 75 (180)
+.+++.+. ..++.+|||||||+|.++..+++..+ .++++|.++ ++..+++ ..++++.++|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34555555 66788999999999999999999975 499999965 7766654 3689999999966 333566
Q ss_pred --EEEeccc
Q 030291 76 --AFFFKTV 82 (180)
Q Consensus 76 --~v~~~~~ 82 (180)
+|+++-.
T Consensus 95 ~~~vvsNlP 103 (253)
T TIGR00755 95 QLKVVSNLP 103 (253)
T ss_pred cceEEEcCC
Confidence 6666544
No 163
>PLN02476 O-methyltransferase
Probab=98.73 E-value=9e-08 Score=70.85 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=72.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
+.++++|||||+++|..+..++...+ +.+++.+|.++ ..+.|++ ..+++++.+|..+. .+.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999988754 56799999954 7777754 46899999998652 1369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|+|+.-.- ......+++.+.+.|+| ||.+++-+.
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~---GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRV---GGVIVMDNV 229 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEecC
Confidence 99998443 33345789999999999 555555333
No 164
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.73 E-value=1.2e-08 Score=76.42 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=61.7
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCC
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPP 73 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~ 73 (180)
+.+++... ..++.+|||||||+|.++..+++.. .+++++|+++ +++.+++ ..+++++++|+.+ ..+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34455555 6778899999999999999999884 5699999965 7777653 3679999999976 4557
Q ss_pred ccEEEeccccccCChH
Q 030291 74 SDAFFFKTVFHFFDDE 89 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~ 89 (180)
+|.|+++-- +++..+
T Consensus 102 ~d~VvaNlP-Y~Istp 116 (294)
T PTZ00338 102 FDVCVANVP-YQISSP 116 (294)
T ss_pred cCEEEecCC-cccCcH
Confidence 898887544 344444
No 165
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.69 E-value=2.5e-08 Score=72.32 Aligned_cols=76 Identities=22% Similarity=0.453 Sum_probs=62.9
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCcc-cCC
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQ-FIP 72 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~-~~~ 72 (180)
+..|++..+ +++++.|||||.|||.++..+++. +.+++++|+ +.|+....+ ....++..+|++. ++|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 345677777 899999999999999999999999 666999999 447666543 4788999999987 678
Q ss_pred CccEEEecc
Q 030291 73 PSDAFFFKT 81 (180)
Q Consensus 73 ~~D~v~~~~ 81 (180)
.||.++++-
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 999999853
No 166
>PLN02823 spermine synthase
Probab=98.68 E-value=1.2e-07 Score=72.25 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=71.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc----CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF----IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~----~~~~D~v~ 78 (180)
+++++||.||+|.|..++.+++..+..+++.+|+.+ +++.+++ .++++++.+|.... ...||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 467899999999999999988876677899999954 7777764 36889999988663 23699999
Q ss_pred eccccccC---C--hHHHHHHHH-HHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHFF---D--DEDCLKLLK-KCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~~---~--~~~~~~~l~-~~~~~L~p~~~~G~~~~ 113 (180)
+-.. ... + .....++++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8531 111 1 111237888 89999999 776554
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.65 E-value=8.6e-07 Score=67.10 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=85.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEe-cCC---ccc----CCCccEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIE-GDM---FQF----IPPSDAF 77 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~-~d~---~~~----~~~~D~v 77 (180)
...++||||||+|.+...++...++.+++++|+++ +++.|++ ..++++.. .|. ... ...||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 56899999999999988888887789999999965 8888874 23566654 222 221 2359999
Q ss_pred EeccccccCChHHHH---HHHHHH----------------HHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee
Q 030291 78 FFKTVFHFFDDEDCL---KLLKKC----------------REAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM 138 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~---~~l~~~----------------~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (180)
+|+=-++.-...... .-.+.+ .+++.+ ||.+-++.....+. ........++.
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS------~~~~~~~gwft 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEES------KAFAKQVLWFT 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHH------HHHHhhCcEEE
Confidence 998665433222100 111222 223335 56655544332221 01111111111
Q ss_pred EeecCCcccCHHHHHHHHHHcCCeEEEEeec
Q 030291 139 NFNVGGKERTEQEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 169 (180)
..-++.-+.+.+.+.|++.|...+.+...
T Consensus 265 --smv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 265 --SLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred --EEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11124458899999999999977666554
No 168
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.64 E-value=7.8e-07 Score=65.51 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=91.7
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hh-------ccCCC-----------------------------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AV-------TDMPQ----------------------------- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~-------~~a~~----------------------------- 56 (180)
....+||--|||.|+++..++.. +..+.+.|.|- |+ ....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45679999999999999999998 66788888654 42 22110
Q ss_pred ----------CCCeeEEecCCcc--cC----CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 57 ----------TDNLKYIEGDMFQ--FI----PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 57 ----------~~~~~~~~~d~~~--~~----~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..+++...+|+.+ .. ..||+|+..+.+...++-- ++++.+.++||| ||..+=..+..-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~--~Yi~tI~~lLkp---gG~WIN~GPLlyh 207 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENII--EYIETIEHLLKP---GGYWINFGPLLYH 207 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHH--HHHHHHHHHhcc---CCEEEecCCcccc
Confidence 2467788888866 12 2599999998887766655 899999999999 6633333322111
Q ss_pred CCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 121 KEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
. ..........-.++.+|+..++++.||+++....
T Consensus 208 ~-------------~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 F-------------EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-------------CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 0000000111346889999999999999876654
No 169
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.2e-06 Score=60.08 Aligned_cols=133 Identities=13% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCc-hhhccCCC-----CCCeeEEecCCccc--CCCccEEEeccc--c
Q 030291 15 GLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLP-HAVTDMPQ-----TDNLKYIEGDMFQF--IPPSDAFFFKTV--F 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~-~~~~~a~~-----~~~~~~~~~d~~~~--~~~~D~v~~~~~--l 83 (180)
.+.-++|||||+|..+..|.+. .|++.+...|++ ++.+..++ ..+++.++.|+.+. ..+.|+++.+=- .
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence 3677999999999999999887 478889999994 45554332 45678888888663 346888877522 1
Q ss_pred cc---CC--------------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcc
Q 030291 84 HF---FD--------------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKE 146 (180)
Q Consensus 84 ~~---~~--------------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (180)
.. +. -....+++.++-..|.| .|.+++......
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~N--------------------------- 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRAN--------------------------- 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhhc---------------------------
Confidence 11 10 01123556666677777 777777543211
Q ss_pred cCHHHHHHHHHHcCCeEEEEeec---CCceeEEEE
Q 030291 147 RTEQEWGSLFVNAGFTHYKIAPI---FGIKSLIEV 178 (180)
Q Consensus 147 ~~~~~~~~~l~~aGf~~~~~~~~---~~~~~~~~~ 178 (180)
.++++-..++..||........ +...+.+.+
T Consensus 173 -~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 173 -KPKEILKILEKKGYGVRIAMQRKAGGETLSILKF 206 (209)
T ss_pred -CHHHHHHHHhhcccceeEEEEEecCCceEEEEEE
Confidence 3466777888888876544432 334455544
No 170
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.63 E-value=7.3e-08 Score=71.51 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=73.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CC----CeeEEecCCcc---------c
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TD----NLKYIEGDMFQ---------F 70 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~----~~~~~~~d~~~---------~ 70 (180)
.++.+.++++|||-|.-++.+.+.. -..++++|+.+ .+++|++ .. ...|+++|-.. +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 4778889999999998888887764 33689999987 7888874 11 24666766532 2
Q ss_pred CCCccEEEeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 71 IPPSDAFFFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.|.||+|-|.+++||.- ....+-+|.++...|+| ||.++-+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 34599999999999764 34456789999999999 5655543
No 171
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.62 E-value=3.8e-09 Score=73.62 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=69.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec-CCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG-DMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~-d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..+.++||+|+|.|..+..++..+.. +++.++|. |..+.++. +..++.. +-.+..-.+|+|.|..++....++.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~- 186 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPF- 186 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCceeeehhhhhcCceeehHHHHHHHHhhcChH-
Confidence 34689999999999999999888655 88889977 88877652 2222211 1111222599999999999888888
Q ss_pred HHHHHHHHHhhccCCCCcEEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
++|+.++.+|.|. +|.++++
T Consensus 187 -kLL~Di~~vl~ps--ngrviva 206 (288)
T KOG3987|consen 187 -KLLEDIHLVLAPS--NGRVIVA 206 (288)
T ss_pred -HHHHHHHHHhccC--CCcEEEE
Confidence 7899999999994 5776664
No 172
>PRK04148 hypothetical protein; Provisional
Probab=98.61 E-value=1.6e-07 Score=61.82 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=63.3
Q ss_pred ccccccccccCCCeEEEeCCcccH-HHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCC----CccEEE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGA-FARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIP----PSDAFF 78 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~----~~D~v~ 78 (180)
|.+.+. -..+.+++|||||+|. .+..|.+. +..++++|.++ .++.+++ ..++++.+|.+++.. .+|+|.
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 444444 3445789999999996 77777766 67899999965 7777754 357889999987543 599999
Q ss_pred eccccccCChHHHHHHHHHHHHhhc
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIA 103 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~ 103 (180)
+... .++....+.++++.++
T Consensus 83 sirp-----p~el~~~~~~la~~~~ 102 (134)
T PRK04148 83 SIRP-----PRDLQPFILELAKKIN 102 (134)
T ss_pred EeCC-----CHHHHHHHHHHHHHcC
Confidence 8543 3444455666666664
No 173
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.60 E-value=3.8e-07 Score=71.14 Aligned_cols=98 Identities=13% Similarity=0.162 Sum_probs=69.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------C-CCeeEEecCCccc-------CCCccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------T-DNLKYIEGDMFQF-------IPPSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~-~~~~~~~~d~~~~-------~~~~D~v 77 (180)
..+.+|||+|||+|.++...+.. ...+++++|.++ +++.+++ . .+++++++|+.+. ...||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 35789999999999998765543 244899999976 8887764 1 3789999999662 1269999
Q ss_pred EeccccccCCh--------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 78 FFKTVFHFFDD--------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 78 ~~~~~l~~~~~--------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
++.=-. .... .....++..+.+.|+| ||.++.+.+
T Consensus 298 ilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred EECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 985321 1111 1233556678899999 888887654
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.60 E-value=5.1e-07 Score=65.20 Aligned_cols=132 Identities=12% Similarity=0.059 Sum_probs=77.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhcc-CCCCCCee-EEecCCcc--------cCCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTD-MPQTDNLK-YIEGDMFQ--------FIPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~-a~~~~~~~-~~~~d~~~--------~~~~~D~v~~~~~l 83 (180)
.+.++||+|||+|.++..+++.. -.+++++|.+. ++.. .++..++. +...|+.. ....+|+++.+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 56789999999999999999873 45799999965 6654 44444433 33333321 1224777776544
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCe
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~ 162 (180)
.++..+.+.|+| +-.+++..+-..-.. ......+... ...+..-.+.+...+.+.||+
T Consensus 153 ---------~~l~~i~~~l~~---~~~~~L~KPqFE~~~---------~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~ 211 (228)
T TIGR00478 153 ---------SILPELDLLLNP---NDLTLLFKPQFEAGR---------EKKNKKGVVRDKEAIALALHKVIDKGESPDFQ 211 (228)
T ss_pred ---------hHHHHHHHHhCc---CeEEEEcChHhhhcH---------hhcCcCCeecCHHHHHHHHHHHHHHHHcCCCe
Confidence 348889999998 444445422111100 0111111110 011223456777778889999
Q ss_pred EEEEeec
Q 030291 163 HYKIAPI 169 (180)
Q Consensus 163 ~~~~~~~ 169 (180)
+......
T Consensus 212 ~~~~~~s 218 (228)
T TIGR00478 212 EKKIIFS 218 (228)
T ss_pred EeeEEEC
Confidence 8776644
No 175
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.60 E-value=3e-07 Score=66.88 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCc----ccC----CCccEEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMF----QFI----PPSDAFF 78 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~----~~~----~~~D~v~ 78 (180)
.+..|||+|||+|..+..++...|.++++++|.|+ ++.-+.. .+++...+.++. .+. +.+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 34579999999999999999999999999999977 5554432 677877755443 222 3699988
Q ss_pred ec
Q 030291 79 FK 80 (180)
Q Consensus 79 ~~ 80 (180)
+|
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 86
No 176
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.3e-07 Score=65.25 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=53.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcccCCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~~~~~~D~v~~~ 80 (180)
.+++|+|+|||||.++...+-.. -.+++++|+ +++++-+++ ..++.+..+|+.+....+|.++.|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 46789999999999998877775 348999999 568887775 468999999997666789988885
No 177
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.59 E-value=1e-07 Score=72.44 Aligned_cols=64 Identities=25% Similarity=0.312 Sum_probs=52.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C-CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I-PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~-~~~D~v~~~ 80 (180)
++.+|||+|||+|.++..+++. +.+++++|.++ +++.+++ ..++++.++|+.+. . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4689999999999999999885 56899999965 8888764 34799999999542 1 259999985
No 178
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.58 E-value=2.1e-07 Score=69.58 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc-cCC-CccEEEeccccccC
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ-FIP-PSDAFFFKTVFHFF 86 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~-~~~-~~D~v~~~~~l~~~ 86 (180)
++.|||+|||+|.++-..++.. -.++.+++-|+|.+.|++ ..+|+++.+-+.+ .+| ..|++|+--+=.-+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 5679999999999998888875 447999999999999885 6889999998865 556 59999984433333
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
-++...+..--.++.|+| .|..+=
T Consensus 257 ~NERMLEsYl~Ark~l~P---~GkMfP 280 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKP---NGKMFP 280 (517)
T ss_pred hhHHHHHHHHHHHhhcCC---CCcccC
Confidence 344333333345699999 888774
No 179
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.58 E-value=1.7e-07 Score=70.89 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=74.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC----CCCeEEEeeCch-hhccCCC------CCCeeE--EecCCccc---C-----
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF----PGIKCTVLDLPH-AVTDMPQ------TDNLKY--IEGDMFQF---I----- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~----~~~~~~~~D~~~-~~~~a~~------~~~~~~--~~~d~~~~---~----- 71 (180)
++++..++|+|||+|.-+..|++.. ...+|+.+|+|. +++.+.+ .+.+++ +++|+.+. +
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 3567789999999999888877764 346899999976 7766643 244544 78888542 1
Q ss_pred -CCccEEEec-cccccCChHHHHHHHHHHHH-hhccCCCCcEEEEE
Q 030291 72 -PPSDAFFFK-TVFHFFDDEDCLKLLKKCRE-AIASNGERGKVLII 114 (180)
Q Consensus 72 -~~~D~v~~~-~~l~~~~~~~~~~~l~~~~~-~L~p~~~~G~~~~~ 114 (180)
+...+++.. +++.++++++...+|+++++ .|+| ||.+++.
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG 196 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIG 196 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEe
Confidence 125666664 58999999999999999999 9999 7887773
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.56 E-value=1.7e-07 Score=70.42 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=68.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-------CCCeeEEecCCcc---cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ---FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~---~~~~~D~v~~~~~l 83 (180)
=..++|||+|||+|.++..-++.+ -.+++++|-|++.+.+.+ ...+++..+.+.+ +.+..|+|++-++=
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 356789999999999999988887 568999999887777764 4568888888865 33479999997664
Q ss_pred ccCCh-HHHHHHHHHHHHhhccCCCCcEEE
Q 030291 84 HFFDD-EDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 84 ~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+++-- .-...+|-.-=++|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 44332 2222334444489999 66554
No 181
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.56 E-value=4.1e-07 Score=67.63 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=74.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC----------CCCeeEEecCCccc---CC-CccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ----------TDNLKYIEGDMFQF---IP-PSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~----------~~~~~~~~~d~~~~---~~-~~D~v~ 78 (180)
+++++||-||.|.|..++.+++..+..+++.+|+. .+++.+++ .+|++++..|..+. .+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 44579999999999999999999988999999995 48888875 37888999888662 23 599999
Q ss_pred eccccc--cCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 79 FKTVFH--FFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 79 ~~~~l~--~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+-..=. .-+..-...+++.++++|++ +|.++..
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 854422 11111223899999999999 6666654
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.1e-07 Score=66.54 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=70.9
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeC-chhhccCCC----------------CCCeeEEecCC
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDL-PHAVTDMPQ----------------TDNLKYIEGDM 67 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~----------------~~~~~~~~~d~ 67 (180)
+.+..-+.++.+.||+|+|+|.++..+.... ++....|+|. ++.++..++ ..+..++.+|-
T Consensus 74 e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg 153 (237)
T KOG1661|consen 74 EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG 153 (237)
T ss_pred HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc
Confidence 3333346788999999999999999887552 3433489998 666666653 46778888887
Q ss_pred cc---cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 68 FQ---FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 68 ~~---~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.. ...+||.|.+..... +..+++...|++ ||++++-
T Consensus 154 r~g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVGAAAS--------ELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred cccCCccCCcceEEEccCcc--------ccHHHHHHhhcc---CCeEEEe
Confidence 55 234699999975543 567788889999 9999884
No 183
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.53 E-value=2.5e-07 Score=68.89 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC----CCCeeE--EecCCc---ccCCCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ----TDNLKY--IEGDMF---QFIPPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~----~~~~~~--~~~d~~---~~~~~~D~v~~~~~l 83 (180)
.+.+|||+|+|+|..+-+..+.++ ..+++.+|.|. |++.++. ..+... ...+.. .+....|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 467899999999998877777765 45789999976 7776653 111110 011111 133356999999999
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..+++..+..+++++.+.+. +.++++|...+.
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~ 144 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA 144 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence 99999777788888888764 588888865443
No 184
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.52 E-value=3.7e-06 Score=60.03 Aligned_cols=131 Identities=14% Similarity=0.088 Sum_probs=90.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCc-hhhccCCC--------CCCeeEEecCCcc---c--CCCccEEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLP-HAVTDMPQ--------TDNLKYIEGDMFQ---F--IPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~-~~~~~a~~--------~~~~~~~~~d~~~---~--~~~~D~v~ 78 (180)
+.+.+|||...|.|.++...++. ++ .++.++.. ..++-|.- ..++.++.+|..+ . ..+||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45789999999999999999888 55 78899984 47776652 3578999999976 2 23699988
Q ss_pred ec-cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHH
Q 030291 79 FK-TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFV 157 (180)
Q Consensus 79 ~~-~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (180)
-- =-|.+........+.+++.++|+| ||.++=..-.+...-+ ..| -.....+.|+
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~Pg~ryr---------G~d------------~~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNPGKRYR---------GLD------------LPKGVAERLR 266 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCCCcccc---------cCC------------hhHHHHHHHH
Confidence 51 112222344455899999999999 8888764422211100 001 2356778999
Q ss_pred HcCCeEEEEeecC
Q 030291 158 NAGFTHYKIAPIF 170 (180)
Q Consensus 158 ~aGf~~~~~~~~~ 170 (180)
++||+++......
T Consensus 267 ~vGF~~v~~~~~~ 279 (287)
T COG2521 267 RVGFEVVKKVREA 279 (287)
T ss_pred hcCceeeeeehhc
Confidence 9999988766543
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.48 E-value=1e-06 Score=64.43 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=71.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----------CCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF----------IPP 73 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~----------~~~ 73 (180)
..++++|||||+++|..+..++... ++.+++.+|..+ ....|++ ..+++++.++..+. .+.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3568899999999999999998875 577999999944 6666653 57899999988652 146
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
||+|+.-.- ...-..+++.+.+.|+| |+++++|..
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~----GGviv~DNv 191 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKV----GGVIGYDNT 191 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCC----CeEEEEcCC
Confidence 999998543 22234678888999999 455555533
No 186
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.46 E-value=9e-07 Score=62.73 Aligned_cols=94 Identities=13% Similarity=0.227 Sum_probs=62.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC----CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----~~~D~v~~~~~ 82 (180)
..+.++||+|||+|.++..++... ..+++++|.++ +++.+++ ..+++++++|+.+.. ..||+|+++=-
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 356799999999999998765554 35899999955 6665553 347899999986522 25999998544
Q ss_pred cccCChHHHHHHHHHHHH--hhccCCCCcEEEEE
Q 030291 83 FHFFDDEDCLKLLKKCRE--AIASNGERGKVLII 114 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~--~L~p~~~~G~~~~~ 114 (180)
... . ....+++.+.+ +|+| ++.+++.
T Consensus 131 y~~-g--~~~~~l~~l~~~~~l~~---~~iv~ve 158 (199)
T PRK10909 131 FRK-G--LLEETINLLEDNGWLAD---EALIYVE 158 (199)
T ss_pred CCC-C--hHHHHHHHHHHCCCcCC---CcEEEEE
Confidence 321 1 11244555554 3777 5555543
No 187
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.4e-07 Score=66.88 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=60.0
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcc-cCC---C
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQ-FIP---P 73 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~-~~~---~ 73 (180)
+.+++... ..+.+.|||||+|.|.+|..|++. ..+++++|+.. +.+..++ ..+++++.+|++. +.+ .
T Consensus 20 ~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 20 DKIVEAAN--ISPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 34555555 666899999999999999999999 45599999854 5555543 5889999999977 455 4
Q ss_pred ccEEEeccccccCChH
Q 030291 74 SDAFFFKTVFHFFDDE 89 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~ 89 (180)
++.|+++-- +++..+
T Consensus 96 ~~~vVaNlP-Y~Issp 110 (259)
T COG0030 96 PYKVVANLP-YNISSP 110 (259)
T ss_pred CCEEEEcCC-CcccHH
Confidence 677776543 344443
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=9.9e-07 Score=71.06 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=70.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cC--CCccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FI--PPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~--~~~D~v~~~~~ 82 (180)
....+||||||.|.++..+++.+|+..++|+|... .+.++.+ ..|+.+.+.|+.. .+ .+.|.|+.++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46788999999999999999999999999999943 3333321 4678888777621 22 35888887443
Q ss_pred cccCCh------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDD------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
==+... -....+++.+.+.|+| ||.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 111110 1234889999999999 88888754
No 189
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.42 E-value=5.9e-07 Score=65.83 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=71.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc----cCC-CccEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ----FIP-PSDAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~----~~~-~~D~v 77 (180)
+++++||=||.|.|..++.+++..+..+++.+|+.+ +++.+++ .+|++++..|... ... .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 468999999999999999999887678999999955 7777764 4689999999855 233 69999
Q ss_pred EeccccccCCh--HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFKTVFHFFDD--EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~~~l~~~~~--~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+.-..-...+. .-..++++.+++.|+| +|.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 98332211111 1234889999999999 66666543
No 190
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.40 E-value=6.1e-07 Score=71.08 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=63.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc-----C--CCccEEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF-----I--PPSDAFF 78 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~-----~--~~~D~v~ 78 (180)
..+..+|||+|||+|.++..+++.. .+++++|.++ +++.+++ ..+++++++|+.+. . ..||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999998874 4799999965 8888775 35899999998542 1 2489998
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+.-.= ..-. ..+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr--~G~~--~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPR--KGCA--AEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCC--CCCC--HHHHHHHHh-cCC---CEEEEE
Confidence 73220 1101 255666554 778 665555
No 191
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.40 E-value=1.1e-06 Score=61.37 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=67.8
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch----hhccCCC---CCCeeEEecCCcc--cCCCccEEEeccccccCCh
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH----AVTDMPQ---TDNLKYIEGDMFQ--FIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~----~~~~a~~---~~~~~~~~~d~~~--~~~~~D~v~~~~~l~~~~~ 88 (180)
+++|||+|.|.-+..++=.+|..+++.+|... .+..+.. ..|+++++..+.+ ....||+|++..+- +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence 89999999999999999999999999999833 3333332 6789999999966 33469999998774 2
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.. .+++.+...+++ ||.+++.-
T Consensus 127 l~--~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 LD--KLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp HH--HHHHHHGGGEEE---EEEEEEEE
T ss_pred HH--HHHHHHHHhcCC---CCEEEEEc
Confidence 33 778999999999 78777753
No 192
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.40 E-value=6.8e-07 Score=63.55 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=59.1
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC---------------CCCCeeEEecCC
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP---------------QTDNLKYIEGDM 67 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~---------------~~~~~~~~~~d~ 67 (180)
.+++.+. +.+.+..+|||||.|......+...+-.+.+|+|+.+ ....++ ...++++..+|+
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4556666 7889999999999999888776665444599999843 332222 146788899999
Q ss_pred ccc------CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 68 FQF------IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 68 ~~~------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+. ....|+|+++... +++ +.-..|.+....||+ |..+++
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~----G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDP-DLNLALAELLLELKP----GARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-T----T-EEEE
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCC----CCEEEE
Confidence 762 2468999998764 333 333456777788998 444554
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=98.36 E-value=2.7e-06 Score=62.62 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=67.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCccc-CCCccEEEecc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQF-IPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~~-~~~~D~v~~~~ 81 (180)
+++++||=||+|.|..++.++++- .+++.+|+.+ +++.+++ .+|++++.. +.+. ...||+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 678999999999999999999984 3899999955 8877775 577777652 3222 24699999865
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
. .++ .+.+.++++|+| ||.++..
T Consensus 148 ~----~~~---~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 148 E----PDI---HKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred C----CCh---HHHHHHHHhcCC---CcEEEEC
Confidence 4 222 778999999999 6666553
No 194
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.35 E-value=5.6e-07 Score=65.89 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=74.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-c--CCCccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-F--IPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~--~~~~D~v~~~~~l~~~~~ 88 (180)
.+.+..++|+|||.|-.... .|.+..++.|++. .+.-+++.+......+|+.. + ..++|.+++..++||+..
T Consensus 43 ~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 34578899999999876543 3778899999976 55555543332566677755 2 236999999999999986
Q ss_pred HH-HHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 89 ED-CLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 89 ~~-~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. +.++++++.+.++| ||..++..+.
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyvwa 145 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEeh
Confidence 54 55899999999999 9998886654
No 195
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.33 E-value=1.2e-06 Score=69.41 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=61.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHC----CCCeEEEeeCch-hhccC----C--C-CCCeeEEecCCcc-cCC-CccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEAF----PGIKCTVLDLPH-AVTDM----P--Q-TDNLKYIEGDMFQ-FIP-PSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~----~~~~~~~~D~~~-~~~~a----~--~-~~~~~~~~~d~~~-~~~-~~D~v~~~~ 81 (180)
...|+|||||+|.++.+.++.. ...+++++|-+. +.... + . ..+|+++++|+.+ ..| .+|+|++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4679999999999987766553 346899999854 22221 1 1 5889999999976 334 699999844
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
+=....++...+.|....+.||| |++.+
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp----~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKP----DGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEE----EEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCC----CCEEe
Confidence 42233344455778888899999 46655
No 196
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.31 E-value=1e-06 Score=64.50 Aligned_cols=136 Identities=13% Similarity=0.179 Sum_probs=79.4
Q ss_pred CCCeEEEeCCcccHHHHH-HHHHCCCCeEEEeeCch-hhccCC----C------------------------------CC
Q 030291 15 GLRSMVDVGGGTGAFARI-ISEAFPGIKCTVLDLPH-AVTDMP----Q------------------------------TD 58 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~-l~~~~~~~~~~~~D~~~-~~~~a~----~------------------------------~~ 58 (180)
++.++||||||+-..... +++.+ ..++..|..+ ..+..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 467899999999544322 12222 2478888733 433221 1 12
Q ss_pred Cee-EEecCCccc--------CC-CccEEEeccccccCC--hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchh
Q 030291 59 NLK-YIEGDMFQF--------IP-PSDAFFFKTVFHFFD--DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRE 126 (180)
Q Consensus 59 ~~~-~~~~d~~~~--------~~-~~D~v~~~~~l~~~~--~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~ 126 (180)
.+. ++..|+.++ .| .+|+|++.++++... .+.....++++.++||| ||.+++........
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t~----- 205 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGSTY----- 205 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-SE-----
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCcee-----
Confidence 233 566777551 23 399999999998764 34567889999999999 88888876532110
Q ss_pred hhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEee
Q 030291 127 LTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 168 (180)
..+ +....+.-..+.+.+++.++++||.+.+...
T Consensus 206 -----Y~v---G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 206 -----YMV---GGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp -----EEE---TTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred -----EEE---CCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 000 0001112346889999999999999988774
No 197
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.28 E-value=2.2e-06 Score=66.66 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccC----CCccEEEecccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----PPSDAFFFKTVF 83 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----~~~D~v~~~~~l 83 (180)
++.+|||++||+|.++..++.. ..+++++|.++ +++.+++ ..++++.++|+.+.. ..||+|++.=--
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4578999999999999999865 56899999965 7777764 347899999985422 359999884221
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
. .-.. ++++.+. .++| ++.++++
T Consensus 311 ~--G~~~--~~l~~l~-~~~p---~~ivyvs 333 (374)
T TIGR02085 311 R--GIGK--ELCDYLS-QMAP---KFILYSS 333 (374)
T ss_pred C--CCcH--HHHHHHH-hcCC---CeEEEEE
Confidence 1 1111 4455554 4678 5555553
No 198
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.27 E-value=0.00016 Score=54.93 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=67.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC---CCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI---PPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~---~~~D~v~~~~~l~~~~~~ 89 (180)
+.++.++|||||++|.++..+++. +.+++++|...+-......++++....|..... ..+|+++|-.+- .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve----~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE----KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc----CH
Confidence 467889999999999999999998 669999998777666677889999988886633 259999986653 34
Q ss_pred HHHHHHHHHHHhhcc
Q 030291 90 DCLKLLKKCREAIAS 104 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p 104 (180)
. .+.+-+.++|..
T Consensus 283 ~--rva~lm~~Wl~~ 295 (357)
T PRK11760 283 A--RVAELMAQWLVN 295 (357)
T ss_pred H--HHHHHHHHHHhc
Confidence 4 557778888876
No 199
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.19 E-value=3.4e-06 Score=63.14 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=62.4
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC----CCCeeEEecCCccc---C
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQF---I 71 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~---~ 71 (180)
|++++++.+. ..++..++|.+||.|..+..+++..+ ..+++++|.++ +++.+++ ..+++++++|+.+. .
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 3456777776 67788999999999999999999985 68999999955 8888765 25899999999541 1
Q ss_pred ----CCccEEEecc
Q 030291 72 ----PPSDAFFFKT 81 (180)
Q Consensus 72 ----~~~D~v~~~~ 81 (180)
+.+|.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 2699988843
No 200
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.15 E-value=4.8e-05 Score=54.20 Aligned_cols=123 Identities=14% Similarity=0.217 Sum_probs=81.0
Q ss_pred EEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC--C-ccEEEeccccccCC
Q 030291 19 MVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP--P-SDAFFFKTVFHFFD 87 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~--~-~D~v~~~~~l~~~~ 87 (180)
|.||||-.|.+...|.+...-.++++.|+++ -++.|++ ..++++..+|=++.++ . .|.|+..+| .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 6899999999999999997666899999955 7777764 5789999999767543 3 888888776 3
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
.....++|++....++. ...+++ .+ ......++..|.+.||.+++..
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lIL-qP-----------------------------~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLIL-QP-----------------------------NTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEE-EE-----------------------------SS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEE-eC-----------------------------CCChHHHHHHHHHCCCEEEEeE
Confidence 34455677777666655 334443 11 1244778899999999987654
Q ss_pred ec---CCceeEEEE
Q 030291 168 PI---FGIKSLIEV 178 (180)
Q Consensus 168 ~~---~~~~~~~~~ 178 (180)
-. ..++.++.+
T Consensus 124 lv~e~~~~YeIi~~ 137 (205)
T PF04816_consen 124 LVEENGRFYEIIVA 137 (205)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEeECCEEEEEEEE
Confidence 33 224444444
No 201
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.09 E-value=9.6e-05 Score=56.32 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=73.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------------CCCeeEEecCCcccC----CCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------------TDNLKYIEGDMFQFI----PPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------------~~~~~~~~~d~~~~~----~~~ 74 (180)
.+...++|-+|+|.|...+.+++.-.--+++.+|+ |+|++-++. .+|++++..|..+.. ..|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 46788999999999999999887643568999999 669988873 578999999987632 259
Q ss_pred cEEEecc------ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 75 DAFFFKT------VFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 75 D~v~~~~------~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|.||.-. ++.. ....++..-+++.|++ +|.+++..
T Consensus 367 D~vIVDl~DP~tps~~r---lYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLPDPSTPSIGR---LYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEeCCCCCCcchhh---hhhHHHHHHHHHhcCc---CceEEEec
Confidence 9998721 2211 1233788889999999 77777643
No 202
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=1e-05 Score=58.29 Aligned_cols=98 Identities=17% Similarity=0.317 Sum_probs=73.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCC----CeEEEeeCch-hhccCC-----C--CCCeeEEecCCccc---CC---Ccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPG----IKCTVLDLPH-AVTDMP-----Q--TDNLKYIEGDMFQF---IP---PSD 75 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~----~~~~~~D~~~-~~~~a~-----~--~~~~~~~~~d~~~~---~~---~~D 75 (180)
-++.+.+|+|+|+..-++.|+..+.. .+++.+|++. .+.... + .-.+.-+++|+... +| +-=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999999988877643 7899999976 333222 1 33455667787432 22 233
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.++..+++..+.+.++..+|.+++.+|+| |..+++-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlG 192 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLG 192 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEe
Confidence 56668889999999999999999999999 8888774
No 203
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.07 E-value=1.6e-06 Score=68.24 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=63.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc---h-hhccCCCCCCeeEEecCC-cc--cCC--CccEEEeccccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP---H-AVTDMPQTDNLKYIEGDM-FQ--FIP--PSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~---~-~~~~a~~~~~~~~~~~d~-~~--~~~--~~D~v~~~~~l~ 84 (180)
..-+++||+|||+|.++..|++. +.....+-+. + .++.|.+ ..+....+-+ .. +.| .||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 34467899999999999999998 5333333321 1 2223322 1232222222 11 333 599999988876
Q ss_pred cCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 85 FFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 85 ~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+.. .. -+|-++-|+|+| ||.++++.+...
T Consensus 193 ~W~~~~g--~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDG--FLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhccc--ceeehhhhhhcc---CceEEecCCccc
Confidence 6654 34 579999999999 999999876443
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.06 E-value=7.7e-06 Score=57.17 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=56.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCcc---------cC----CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ---------FI----PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~---------~~----~~~D~v~~~ 80 (180)
+..++||+||++|.++..+++.. +..+++++|+..+.. ..++...++|+.+ .. ..+|+|++-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999986 567899999855311 1334444555432 11 369999986
Q ss_pred cccccCCh---------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 81 TVFHFFDD---------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 81 ~~l~~~~~---------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.......+ ......+.-+.+.|+| ||.+++--
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~ 139 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV 139 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence 63222211 1222344455577999 77666644
No 205
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=0.00035 Score=49.05 Aligned_cols=137 Identities=10% Similarity=0.064 Sum_probs=92.9
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-----hhccCCCCCCeeEEecCCcccC------CCcc
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQFI------PPSD 75 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~~------~~~D 75 (180)
+.++ ++++++||-+|+.+|.....+..-.+.-.+++++.+. .+..+++..|+-.+..|+..+. +..|
T Consensus 70 ~~~p--i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 70 KNFP--IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred ccCC--cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhccccc
Confidence 3455 8899999999999999999998887766889999843 4566667889999999995443 3588
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHH
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSL 155 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
+|+.--. +..+..-+..+....|++ +|.++++--...-. ... . .. .-.++-.+-
T Consensus 148 viy~DVA----Qp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSId--------------vT~---d-p~-~vf~~ev~k 201 (231)
T COG1889 148 VIYQDVA----QPNQAEILADNAEFFLKK---GGYVVIAIKARSID--------------VTA---D-PE-EVFKDEVEK 201 (231)
T ss_pred EEEEecC----CchHHHHHHHHHHHhccc---CCeEEEEEEeeccc--------------ccC---C-HH-HHHHHHHHH
Confidence 8876221 233334567788999999 88887754322111 000 0 00 001222356
Q ss_pred HHHcCCeEEEEeecCC
Q 030291 156 FVNAGFTHYKIAPIFG 171 (180)
Q Consensus 156 l~~aGf~~~~~~~~~~ 171 (180)
|++.||++.+..+.-+
T Consensus 202 L~~~~f~i~e~~~LeP 217 (231)
T COG1889 202 LEEGGFEILEVVDLEP 217 (231)
T ss_pred HHhcCceeeEEeccCC
Confidence 7889999999988754
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=1.4e-05 Score=57.11 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=69.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-ch---hhccCCC---CCCeeEEecCCcccC--CC-ccEEEecccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PH---AVTDMPQ---TDNLKYIEGDMFQFI--PP-SDAFFFKTVFHF 85 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~---~~~~a~~---~~~~~~~~~d~~~~~--~~-~D~v~~~~~l~~ 85 (180)
+.+++|||+|.|.-+..++-.+|+.+++.+|. .+ .++.+.+ ..|++++++.+.+.. .. ||+|.+..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998889999999997 33 3444443 678999999885432 24 99999977642
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
- ..+++-+...+++ ||+++.
T Consensus 147 ---L--~~l~e~~~pllk~---~g~~~~ 166 (215)
T COG0357 147 ---L--NVLLELCLPLLKV---GGGFLA 166 (215)
T ss_pred ---h--HHHHHHHHHhccc---CCcchh
Confidence 2 2667888899998 777765
No 207
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=62.43 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=74.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCch-hhccCCC--------CCCeeEEecCCcccC-------CCccEEE
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQFI-------PPSDAFF 78 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~~-------~~~D~v~ 78 (180)
+++||++=|=||.++...+.. ++ +++.+|+|. .++.+++ ..++.++++|+++.+ ..||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 889999999999999988877 66 899999987 9999985 466899999997732 2699999
Q ss_pred ec------cccccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 79 FK------TVFHFFD-DEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 79 ~~------~~l~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+- .--..+. ......++..+.+.|+| ||.++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEecCC
Confidence 71 1000011 12344789999999999 88888876543
No 208
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.00 E-value=4.4e-05 Score=53.78 Aligned_cols=95 Identities=11% Similarity=0.171 Sum_probs=61.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C---C-CccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I---P-PSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~---~-~~D~v~~ 79 (180)
.+.++||++||+|.++..++.... .+++++|.+. ++..+++ ..+++++++|+... . . .+|+|+.
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 467899999999999999999853 3799999955 6655543 34688999998542 1 1 2677776
Q ss_pred ccccccCChHHHHHHHHHHH--HhhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCR--EAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~~~~~ 117 (180)
.=-+.. .. ...+++.+. .+|++ +.+++.+..
T Consensus 128 DPPy~~-~~--~~~~l~~l~~~~~l~~----~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPFFN-GA--LQALLELCENNWILED----TVLIVVEED 160 (189)
T ss_pred CcCCCC-Cc--HHHHHHHHHHCCCCCC----CeEEEEEec
Confidence 222211 11 124455554 35776 556666543
No 209
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.99 E-value=4.4e-05 Score=59.50 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=68.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---CCCccEEEecccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---IPPSDAFFFKTVFHF 85 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~~~~D~v~~~~~l~~ 85 (180)
..+|||++||+|.++..++...+..+++++|.++ +++.+++ ..++++.+.|+... ...||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 3589999999999999998886556899999955 7776654 34566888888542 24699998842 1
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..+. .++....+.+++ +|.+.++..
T Consensus 135 -Gs~~--~~l~~al~~~~~---~gilyvSAt 159 (382)
T PRK04338 135 -GSPA--PFLDSAIRSVKR---GGLLCVTAT 159 (382)
T ss_pred -CCcH--HHHHHHHHHhcC---CCEEEEEec
Confidence 2333 678887788899 899999843
No 210
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.98 E-value=0.00015 Score=55.11 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=71.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEec-CCcc-cCCC--ccEEEec-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEG-DMFQ-FIPP--SDAFFFK- 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~-d~~~-~~~~--~D~v~~~- 80 (180)
...+..|||-=||||.+.....-. +++++|.|+.. |+.-++. -....+... |+.. +++. +|.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 567789999999999999887666 88899999976 8888875 134444444 7744 4443 9999872
Q ss_pred -----cccccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 -----TVFHFFD-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 -----~~l~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
....-.. +....++++.+.++|++ ||++++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1111111 34456889999999999 888888653
No 211
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=7e-05 Score=55.83 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=83.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-------h-hhccCCC------------------------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-------H-AVTDMPQ------------------------------ 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-------~-~~~~a~~------------------------------ 56 (180)
.+.+||--|||.|.++..++..++.++. =+.| . ++..++.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qG--NEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQG--NEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccc--cHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 3678999999999999999887544322 1211 1 1211110
Q ss_pred ---------CCCeeEEecCCccc--CC----CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 57 ---------TDNLKYIEGDMFQF--IP----PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 57 ---------~~~~~~~~~d~~~~--~~----~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
.++.+.-.+|+.+. .+ .||+|+..+.+..-.+-- +++..+...|+| ||..+=..+..-.-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~Nil--eYi~tI~~iLk~---GGvWiNlGPLlYHF 302 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNIL--EYIDTIYKILKP---GGVWINLGPLLYHF 302 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHH--HHHHHHHHhccC---CcEEEeccceeeec
Confidence 23444456777662 22 499999988877665555 899999999999 55554443321110
Q ss_pred CCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEe
Q 030291 122 EDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIA 167 (180)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 167 (180)
. +.........-..+.+++..+.+..||++.+..
T Consensus 303 ~------------d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 303 E------------DTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred c------------CCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 0 000001111234688999999999999987665
No 212
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=8.5e-05 Score=52.50 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=73.0
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEecCCccc---------CC-
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------IP- 72 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~~- 72 (180)
+|.+.+ ..+.++.+|+|||+..|.++..+++.. +...++++|+.++-. .+++.++++|+..+ .+
T Consensus 35 el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 35 ELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred HHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCC
Confidence 344555 357889999999999999999888774 455699999855322 34599999999652 12
Q ss_pred -CccEEEecccc--------ccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 73 -PSDAFFFKTVF--------HFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 73 -~~D~v~~~~~l--------~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.+|+|++-..- +|... ......+.-+..+|+| ||.+++-.+-.
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~fqg 162 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVFQG 162 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEEeC
Confidence 36999973322 22221 2233556667789999 88888766543
No 213
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.95 E-value=4e-06 Score=64.68 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=42.1
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ 69 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~ 69 (180)
.++||++||+|.++..+++.. .+++++|.+. +++.+++ ..++++.++|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 479999999999999888885 3799999965 8888775 2478899998854
No 214
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.94 E-value=0.00011 Score=52.42 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=70.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---------CCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---------IPPS 74 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---------~~~~ 74 (180)
+-+++++||||.=+|.-+..++...| +.+++++|+.. ..+.+.. ...++++++...+. .+.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 34688999999999999999888764 67999999854 5555542 67899999988652 2369
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|.+|. .+..+... .++.++.+++++ |+++++|.
T Consensus 151 DfaFv----DadK~nY~-~y~e~~l~Llr~----GGvi~~DN 183 (237)
T KOG1663|consen 151 DFAFV----DADKDNYS-NYYERLLRLLRV----GGVIVVDN 183 (237)
T ss_pred eEEEE----ccchHHHH-HHHHHHHhhccc----ccEEEEec
Confidence 99987 44444433 789999999999 55555554
No 215
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=0.00019 Score=50.04 Aligned_cols=144 Identities=17% Similarity=0.077 Sum_probs=85.5
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCC-------------CCCeeEEecCCcc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQ-------------TDNLKYIEGDMFQ 69 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~-------------~~~~~~~~~d~~~ 69 (180)
+++..+. ++++.+|+|+=.|.|++++.+.... |.-.++++=..+....+.. ..|.+.+-.....
T Consensus 39 E~L~FaG--lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAG--LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEec--cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccc
Confidence 4566666 8999999999999999999998874 4445554433222111111 2333333332222
Q ss_pred --cCCCccEEEeccccc-----cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeec
Q 030291 70 --FIPPSDAFFFKTVFH-----FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNV 142 (180)
Q Consensus 70 --~~~~~D~v~~~~~l~-----~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (180)
.....|+++.+..-| .++.....++.+.+.++||| ||.+++.|.......... +. .
T Consensus 117 ~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---------dt-----~ 179 (238)
T COG4798 117 LGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---------DT-----I 179 (238)
T ss_pred cCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---------hh-----h
Confidence 122466666532222 12233445889999999999 888888776554432211 00 0
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEE
Q 030291 143 GGKERTEQEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 143 ~~~~~~~~~~~~~l~~aGf~~~~~ 166 (180)
.....+.....+..+++||+....
T Consensus 180 ~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 180 TLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hhcccChHHHHHHHHhhcceeeee
Confidence 113356777888999999987643
No 216
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.92 E-value=2.9e-05 Score=55.04 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=60.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCcccC--CCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQFI--PPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~~~--~~~D~v~~~~~ 82 (180)
..++.+|+|.-||-|.++..+++..+...++++|+ |...+..++ ..++...++|..+.. ..+|-|+++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 46789999999999999999999777888999999 446666553 577899999996643 35999888543
Q ss_pred cccCChHHHHHHHHHHHHhhcc
Q 030291 83 FHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p 104 (180)
- ... .+|..+.+.+++
T Consensus 179 ~----~~~--~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 E----SSL--EFLDAALSLLKE 194 (200)
T ss_dssp S----SGG--GGHHHHHHHEEE
T ss_pred H----HHH--HHHHHHHHHhcC
Confidence 2 122 678889999998
No 217
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.87 E-value=3.1e-05 Score=53.60 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=69.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC------CCCeeEEecCCcc-cCCCccEEEeccccccCC
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ------TDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~ 87 (180)
.+.+.|+|+|+|.++...++. --++++++. |.....+.+ ..+++++.+|..+ .....|+|+|-..=..+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 367899999999998877776 446999998 445444443 5789999999976 456799999855433334
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++.+..++..+...|+. ++.++=
T Consensus 111 ~E~qVpV~n~vleFLr~---d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRY---DPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhc---CCcccc
Confidence 45556788999999998 777664
No 218
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.6e-05 Score=54.89 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=70.7
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc----
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---- 70 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---- 70 (180)
.|+..+. +.++++|+|-|.|+|.++.++++. .|.-+++.+|.-+ ..+++.+ ..++++.+-|+...
T Consensus 96 ~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 96 MILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 4566677 899999999999999999999887 5777899999844 4455543 68899999999541
Q ss_pred -CCCccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 71 -IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 71 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
...+|.|+. -++.+. ..+.-+..+||.
T Consensus 174 ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~ 201 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPW--EAIPHAAKILKD 201 (314)
T ss_pred cccccceEEE-----cCCChh--hhhhhhHHHhhh
Confidence 124888887 455666 558888889998
No 219
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.85 E-value=1.8e-05 Score=58.64 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=63.2
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----CCCeeEEecCCcccC-C---
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----TDNLKYIEGDMFQFI-P--- 72 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----~~~~~~~~~d~~~~~-~--- 72 (180)
++.+++.+. ..++..|+|||+|.|.+|..|++.. .+++++|..+ +....++ .++++++.+|++.-. +
T Consensus 19 ~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 19 ADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 345666666 6688999999999999999999995 7799999844 5444443 689999999997621 1
Q ss_pred --CccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 73 --PSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 73 --~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
....|+++-.. ++. ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 23355554332 222 2556666664333
No 220
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.83 E-value=0.00013 Score=54.08 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=92.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCcccC----------C-C
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQFI----------P-P 73 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~~----------~-~ 73 (180)
.+...|+.+|||.-....++.. .++.+++-+|.+++++..++ ..+..++..|+.+.+ + .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3456799999999777766532 23678888888875544332 467888888885311 1 2
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceee-EeecC-CcccCHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFM-NFNVG-GKERTEQE 151 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 151 (180)
.-++++-+++.|++.....++++.+.+...| |+ .++.+...+........ .......... ..... ....+.++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRPLDGEWRAG-MRAPVYHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccccchhHHHH-HHHHHHHhhhcccccccccCCChhh
Confidence 4578889999999999999999999998888 44 45555544311110000 0000000000 00011 12357899
Q ss_pred HHHHHHHcCCeEEEE
Q 030291 152 WGSLFVNAGFTHYKI 166 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~ 166 (180)
+.+.|++.||+..+.
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998765
No 221
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=1.5e-05 Score=52.80 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=50.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcccC---CCccEEEeccccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQFI---PPSDAFFFKTVFH 84 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~~~---~~~D~v~~~~~l~ 84 (180)
.+.+++|+|||.|.++.. ...+....+.|+|+ ++.++-+.+ .-++.++++|+.+.. +.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHH-hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 467899999999999833 33344567899999 558888875 456788999987633 3599988865543
No 222
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.81 E-value=1.7e-05 Score=61.49 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=42.0
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ 69 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~ 69 (180)
.++||++||+|.++..+++.. .+++++|.++ +++.+++ ..++++.++|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 579999999999999888875 3799999965 8877764 3478899999854
No 223
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.81 E-value=1.7e-05 Score=57.43 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCC--CccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIP--PSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~--~~D~v~~~~~l~ 84 (180)
++.+.+|+|||||.--++..+....++.+|++.|+.. +++.... ..+.++...|.....+ ..|+.+..-+++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 5679999999999999999888888889999999954 6655543 5678888889876433 599999988888
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+..+.. ..--++.+.++. -.++++-+
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfP 209 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFP 209 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEE
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEecc
Confidence 7766553 333455666664 45555443
No 224
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=1.1e-05 Score=54.33 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=64.8
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCcc-----cCCCccEEEe
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQ-----FIPPSDAFFF 79 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~-----~~~~~D~v~~ 79 (180)
+.+|||+|+|- |..+..++...|..++...|..+ .+...++ ..++..+.-+... ....||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999986 66666777778888999999854 5555443 1222222222211 1226999999
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..++.. ++....+++.+...|+| .|.-+++.+
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p---~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRP---SGRALLFSP 141 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCc---ccceeEecC
Confidence 988743 44445889999999999 788766543
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.76 E-value=0.00012 Score=51.13 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-----CCCCeeEEecCCcccCCCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-----QTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-----~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~ 88 (180)
.+++|||+|+|+|..+..-+... -..++..|+.. .....+ ...++.+...|...+.+.+|+++...+++.-+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~~ 157 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHTE 157 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCchH
Confidence 46899999999999988777764 33566677643 332222 145678888888776667999999998875444
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.. .++. +...+... |-.+++.++..+
T Consensus 158 a~--~l~~-~~~~l~~~--g~~vlvgdp~R~ 183 (218)
T COG3897 158 AD--RLIP-WKDRLAEA--GAAVLVGDPGRA 183 (218)
T ss_pred HH--HHHH-HHHHHHhC--CCEEEEeCCCCC
Confidence 44 5577 55555551 455555555443
No 226
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.75 E-value=5.2e-05 Score=52.99 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=62.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCe---------EEEeeCch-hhccCCC-------CCCeeEEecCC
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIK---------CTVLDLPH-AVTDMPQ-------TDNLKYIEGDM 67 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~---------~~~~D~~~-~~~~a~~-------~~~~~~~~~d~ 67 (180)
|+.... .+++..++|--||+|.+....+....+.. +++.|++. ++..+++ ...+.+.+.|+
T Consensus 20 ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 20 LLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 344444 56788999999999999887766655555 89999955 7777764 45688999999
Q ss_pred cc-cC--CCccEEEecccccc-CCh-----HHHHHHHHHHHHhhcc
Q 030291 68 FQ-FI--PPSDAFFFKTVFHF-FDD-----EDCLKLLKKCREAIAS 104 (180)
Q Consensus 68 ~~-~~--~~~D~v~~~~~l~~-~~~-----~~~~~~l~~~~~~L~p 104 (180)
.+ +. ..+|.|+++--... +.. .-..++++++.+++++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 65 31 35999998543221 121 1234667888888886
No 227
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.69 E-value=4.5e-05 Score=58.83 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=76.1
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cC--CCccEEEec
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFK 80 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~ 80 (180)
.+.+++.++|+|||-|.....+.... .+.++++|.+. .+.++.. .....+...|+.. +. ..+|.+.+.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 45667789999999999988776654 67799999854 4444432 3444457777755 23 369999999
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.+..|.++.. .+++++.++++| ||.+...+..
T Consensus 186 d~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i 217 (364)
T KOG1269|consen 186 EVVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWI 217 (364)
T ss_pred eecccCCcHH--HHHHHHhcccCC---CceEEeHHHH
Confidence 9999999999 779999999999 7777776654
No 228
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.68 E-value=0.00012 Score=54.76 Aligned_cols=97 Identities=22% Similarity=0.335 Sum_probs=67.5
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCch-hhccCCC--------CCCeeEEecCCccc------CCCccEEE
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQF------IPPSDAFF 78 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~------~~~~D~v~ 78 (180)
.+++|||+=|=||.++...+.. ++ +++.+|.|. +++.+++ ..++++++.|+++. ...||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 5789999999999999987665 44 799999987 8998875 36889999999762 23699999
Q ss_pred ec---cccccCC-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FK---TVFHFFD-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~---~~l~~~~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+- +.=..+. ......++.++.+.|+| ||.++.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 71 1101111 23345789999999999 777666543
No 229
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.63 E-value=0.00055 Score=54.80 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=72.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCC-CccEEEe-
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIP-PSDAFFF- 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~-~~D~v~~- 79 (180)
..++.+|||+++|.|.-+..+++... ...+++.|++. .+...++ ..++.+.+.|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 46788999999999999999988753 35799999954 4444432 3567777777643 222 5999994
Q ss_pred ---c--cccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 80 ---K--TVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 80 ---~--~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
+ +++..-++ ..+.++|....++||| ||.++-+.+..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 3 23433222 1236889999999999 88887776653
No 230
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00051 Score=49.46 Aligned_cols=140 Identities=10% Similarity=0.078 Sum_probs=83.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhc-cCCCCCCeeEE-ecCCcc-----cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVT-DMPQTDNLKYI-EGDMFQ-----FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~-~a~~~~~~~~~-~~d~~~-----~~~~~D~v~~~~~l~ 84 (180)
..++..+||||+.||.++..+++.. -..++++|... .+. ..++.+|+..+ ..|+.. .....|++++--.+-
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeehh
Confidence 3567889999999999999999995 33689999844 343 34445555433 233321 122578888754432
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee-cCCcccCHHHHHHHHHHcCCeE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN-VGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
... .+|..+...+++ ++-++..--...+.. .......+... ...+..-...+.+.+.+.||++
T Consensus 156 ---SL~--~iLp~l~~l~~~---~~~~v~LvKPQFEag--------r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 156 ---SLK--LILPALLLLLKD---GGDLVLLVKPQFEAG--------REQVGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred ---hHH--HHHHHHHHhcCC---CceEEEEecchhhhh--------hhhcCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 222 779999999999 666555321110100 01111111111 1123334577888899999999
Q ss_pred EEEeec
Q 030291 164 YKIAPI 169 (180)
Q Consensus 164 ~~~~~~ 169 (180)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 887644
No 231
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.56 E-value=0.0028 Score=45.18 Aligned_cols=88 Identities=9% Similarity=0.164 Sum_probs=68.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC---CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP---PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~---~~D~v~~~~ 81 (180)
.+...++.||||-.+.+...+.+..+...++..|+.+ .++.|.+ ..+++...+|-+..+. .+|+++..+
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 3456669999999999999999999888999999844 5555543 6788999998866432 599988876
Q ss_pred ccccCChHHHHHHHHHHHHhhcc
Q 030291 82 VFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
+ .......+|++-.+-|+.
T Consensus 94 M----GG~lI~~ILee~~~~l~~ 112 (226)
T COG2384 94 M----GGTLIREILEEGKEKLKG 112 (226)
T ss_pred C----cHHHHHHHHHHhhhhhcC
Confidence 6 345566788888888874
No 232
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.56 E-value=0.00083 Score=48.02 Aligned_cols=133 Identities=13% Similarity=0.084 Sum_probs=84.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCch-----hhccCCCCCCeeEEecCCcccC------CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQFI------PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~~------~~~D~v~~~ 80 (180)
++++.+||-+|+++|.....+..-. +.-.+++++.+. .+..|++..|+-.+..|+..+. +..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 7889999999999999999888873 466899999843 3455556899999999996532 369998873
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAG 160 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 160 (180)
-. ...+.+-++.++...||+ ||.++++--... .|... . ..--..+-.+.|++.|
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~s--------------iD~t~---~--p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKP---GGHLIISIKARS--------------IDSTA---D--PEEVFAEEVKKLKEEG 204 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------H-SSS---S--HHHHHHHHHHHHHCTT
T ss_pred CC----ChHHHHHHHHHHHhhccC---CcEEEEEEecCc--------------ccCcC---C--HHHHHHHHHHHHHHcC
Confidence 33 123333567888899999 888888642211 11000 0 0000122345677889
Q ss_pred CeEEEEeecCC
Q 030291 161 FTHYKIAPIFG 171 (180)
Q Consensus 161 f~~~~~~~~~~ 171 (180)
|++.+...+.+
T Consensus 205 ~~~~e~i~LeP 215 (229)
T PF01269_consen 205 FKPLEQITLEP 215 (229)
T ss_dssp CEEEEEEE-TT
T ss_pred CChheEeccCC
Confidence 99999888754
No 233
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.54 E-value=4.8e-05 Score=52.03 Aligned_cols=62 Identities=21% Similarity=0.425 Sum_probs=45.1
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcccCC-----C-ccEEEec
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQFIP-----P-SDAFFFK 80 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~~~-----~-~D~v~~~ 80 (180)
..|+|+.||.|..+..+++.+ .+++++|+.. .++.++. ..+++++++|+.+..+ . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999995 4599999954 6777663 5689999999976321 2 7999963
No 234
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.51 E-value=0.0012 Score=44.25 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=62.4
Q ss_pred EEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCCC---CC---eeEEecCCcc---cCC---CccEEEeccccc
Q 030291 19 MVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQT---DN---LKYIEGDMFQ---FIP---PSDAFFFKTVFH 84 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~~---~~---~~~~~~d~~~---~~~---~~D~v~~~~~l~ 84 (180)
++|+|||+|... .+....+. ..++++|.+. ++...+.. .. +.+...+... +.. .+|++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 34444322 4788899965 55553321 11 4677776543 222 599994444444
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
+.. .. ..+.++.+.++| +|.+++.......
T Consensus 131 ~~~-~~--~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP-PA--KALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred cCC-HH--HHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 444 33 779999999999 8888887765443
No 235
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.49 E-value=9.2e-05 Score=47.01 Aligned_cols=90 Identities=23% Similarity=0.375 Sum_probs=37.5
Q ss_pred EEeCCcccHHHHHHHHHCCC---CeEEEeeC-c---hhhccCCC---CCCeeEEecCCccc-----CCCccEEEeccccc
Q 030291 20 VDVGGGTGAFARIISEAFPG---IKCTVLDL-P---HAVTDMPQ---TDNLKYIEGDMFQF-----IPPSDAFFFKTVFH 84 (180)
Q Consensus 20 LdiG~G~G~~~~~l~~~~~~---~~~~~~D~-~---~~~~~a~~---~~~~~~~~~d~~~~-----~~~~D~v~~~~~l~ 84 (180)
||||+..|..+..+++..+. .+++++|. + ...+..++ ..+++++.++..+. ...+|+++.-+. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 69999999998888876533 26899998 4 23333332 56899999998542 247999988553 2
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..+. ....++.+.+.|+| ||.+++.|
T Consensus 80 ~~~~--~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 SYEA--VLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp -HHH--HHHHHHHHGGGEEE---EEEEEEE-
T ss_pred CHHH--HHHHHHHHHHHcCC---CeEEEEeC
Confidence 2222 23668899999999 77666654
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.48 E-value=0.00022 Score=50.03 Aligned_cols=98 Identities=16% Similarity=0.307 Sum_probs=67.3
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-------------CCCeeEEecCCcccCCC-ccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-------------TDNLKYIEGDMFQFIPP-SDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-------------~~~~~~~~~d~~~~~~~-~D~v~~ 79 (180)
....+.|||||-|.+...|...+|.-.+.|.++. ++-+..+. ..|+.+...+.....|+ |..-..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4467899999999999999999999999999982 23333321 35666666666555553 444444
Q ss_pred ccccccCChHH-----------HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 80 KTVFHFFDDED-----------CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 80 ~~~l~~~~~~~-----------~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+-+++.++|+. ...++.+..=+|++ ||.++...
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEe
Confidence 44555555542 23678888899999 77777654
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.45 E-value=0.00031 Score=46.97 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=41.9
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC------CCCeeEEecCCcccC
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ------TDNLKYIEGDMFQFI 71 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~------~~~~~~~~~d~~~~~ 71 (180)
+++|||||.|..+..+++.++..+++++|+. .+.+.+++ ..++++.+..+.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 4899999999999999999888899999994 47666654 245777777664433
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.43 E-value=0.00038 Score=46.70 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=48.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeCch-hhccCCC---------CCCeeEEecCCccc--CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA----FPGIKCTVLDLPH-AVTDMPQ---------TDNLKYIEGDMFQF--IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~~~-~~~~a~~---------~~~~~~~~~d~~~~--~~~~D~ 76 (180)
..+..+|+|+|||.|.++..++.. .++.+++++|..+ ..+.+.+ ..+.++...+..+. ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356889999999999999999882 2688999999844 5555543 24555555555332 335777
Q ss_pred EEeccc
Q 030291 77 FFFKTV 82 (180)
Q Consensus 77 v~~~~~ 82 (180)
++..++
T Consensus 103 ~vgLHa 108 (141)
T PF13679_consen 103 LVGLHA 108 (141)
T ss_pred EEEeec
Confidence 776444
No 239
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0014 Score=48.95 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=100.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCC---C------------------------CCCeeE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMP---Q------------------------TDNLKY 62 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~---~------------------------~~~~~~ 62 (180)
......|+.+|||.-.+.-.|...+ +.+.++-+|.|+ ...++. + .++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3567889999999999999998886 677888888876 333331 0 233334
Q ss_pred EecCCcc--c----C-------CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh
Q 030291 63 IEGDMFQ--F----I-------PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE 129 (180)
Q Consensus 63 ~~~d~~~--~----~-------~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~ 129 (180)
.-.|..+ . + .-+-++++-.++-|++++....+++.+.+.... +.++..+...+..+....+..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLA 240 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHH
Confidence 4444432 0 0 014456777888899998888889999988875 899999988866655432222
Q ss_pred hhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 130 SKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
.-.......... ...-+.+..++-+.++||+-+.+.+...
T Consensus 241 nlk~r~~~L~gl--e~y~s~Esq~~Rf~~~Gw~~v~a~Dm~e 280 (335)
T KOG2918|consen 241 NLKRRGCPLHGL--ETYNSIESQRSRFLKAGWEYVIAVDMNE 280 (335)
T ss_pred HHHhcCCCCchh--hhcccHHHHHHHHHhcCCceeehhhHHH
Confidence 111111111000 1345788899999999999888776543
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.40 E-value=0.0012 Score=49.01 Aligned_cols=96 Identities=16% Similarity=0.303 Sum_probs=54.4
Q ss_pred CCCeEEEeCCcccHHHHH-HHHH-CCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcc---cCCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARI-ISEA-FPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQ---FIPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~-l~~~-~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~---~~~~~D~v~~~ 80 (180)
.+++|+=||||.=-+|.. +++. .++..++++|..+ +.+.+++ ..++++.++|..+ ....||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 356999999998655554 4443 4678899999944 6666643 6789999999865 24579999987
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
....- ....+.+++..+.+.++| |..+++-
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 76542 222345899999999999 6666553
No 241
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.37 E-value=0.00027 Score=53.64 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-------CCCCeEEEeeCch-hhccCC------C--CCCeeEEecCCccc-----C
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-------FPGIKCTVLDLPH-AVTDMP------Q--TDNLKYIEGDMFQF-----I 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-------~~~~~~~~~D~~~-~~~~a~------~--~~~~~~~~~d~~~~-----~ 71 (180)
..++.+|+|.+||+|.+...+.+. .+...++|+|+.+ +...++ . ..+..+..+|.+.. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456778999999999998887663 3678899999944 444332 1 33345778887652 2
Q ss_pred CCccEEEecc--ccc-c----C-----------C-hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 PPSDAFFFKT--VFH-F----F-----------D-DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 ~~~D~v~~~~--~l~-~----~-----------~-~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..||+|+++= ... + . + ...-..++..+.+.|++ +|++.+.-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 3699999842 211 0 0 0 01112588999999999 888766554
No 242
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.33 E-value=0.0012 Score=46.23 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc-------CCCccEEEe
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF-------IPPSDAFFF 79 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~-------~~~~D~v~~ 79 (180)
.+.++||+=||+|.++...+.+. -.+++.+|.+. .....++ ..+++.+..|.... ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 57899999999999999988885 34799999854 5555543 34688888887441 236999998
Q ss_pred ccccccCChHHHHHHHHHHH--HhhccCCCCcEEEEEEeeeC
Q 030291 80 KTVFHFFDDEDCLKLLKKCR--EAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~--~~L~p~~~~G~~~~~~~~~~ 119 (180)
-=-. ..... ..+++..+. .+|++ +.+++.+....
T Consensus 121 DPPY-~~~~~-~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGLY-YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --ST-TSCHH-HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCc-ccchH-HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 3221 11221 236677777 78998 66677676544
No 243
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.0001 Score=55.89 Aligned_cols=103 Identities=15% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCchhhccCCC-------CCCeeEEecCCcc---cCC---CccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPHAVTDMPQ-------TDNLKYIEGDMFQ---FIP---PSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~a~~-------~~~~~~~~~d~~~---~~~---~~D~v~~~~ 81 (180)
+++|||+|.|.|.-..++-..+|.. +++.++.+..+...-. .........|+.. ++| .|++++...
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 5679999999998887777777653 3455555443333221 2233344444432 344 377777655
Q ss_pred ccccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 82 VFHFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 82 ~l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
-|-+... ......++++.+.+.| ||.+++++...+.+
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp~G 231 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTPAG 231 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCchh
Confidence 4444433 3344589999999999 99999998754443
No 244
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.27 E-value=0.00072 Score=55.11 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=44.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC--------CCeEEEeeCch-hhccCCC----C--CCeeEEecCCcc--------cC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP--------GIKCTVLDLPH-AVTDMPQ----T--DNLKYIEGDMFQ--------FI 71 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~--------~~~~~~~D~~~-~~~~a~~----~--~~~~~~~~d~~~--------~~ 71 (180)
...+|||.+||+|.+...++...+ ...++++|+.+ .+..++. . ..+...+.|... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 456899999999999988876643 24679999955 6655542 1 234445555432 12
Q ss_pred CCccEEEec
Q 030291 72 PPSDAFFFK 80 (180)
Q Consensus 72 ~~~D~v~~~ 80 (180)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 369999985
No 245
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.23 E-value=0.0019 Score=50.28 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCC-CeEEEeeCch-hhccCCC------CCCeeEEecCCcccC----CCccEEEeccccc
Q 030291 17 RSMVDVGGGTGAFARIISEAFPG-IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFI----PPSDAFFFKTVFH 84 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~----~~~D~v~~~~~l~ 84 (180)
-+|||+-||+|..+..++...++ .+++++|.+. .++.+++ ..++++.+.|....+ ..||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 48999999999999999988533 5799999954 6666654 235788888885422 3599998733 2
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+. .++..+.+.+++ +|.+.++.+.
T Consensus 124 --Gs~~--~fld~al~~~~~---~glL~vTaTD 149 (374)
T TIGR00308 124 --GTPA--PFVDSAIQASAE---RGLLLVTATD 149 (374)
T ss_pred --CCcH--HHHHHHHHhccc---CCEEEEEecc
Confidence 2333 679999999998 8899998543
No 246
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.22 E-value=0.0024 Score=53.94 Aligned_cols=100 Identities=10% Similarity=0.111 Sum_probs=65.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC----C--------------------------------------CCeEEEeeCch-h
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF----P--------------------------------------GIKCTVLDLPH-A 50 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~----~--------------------------------------~~~~~~~D~~~-~ 50 (180)
+++..++|..||+|.+....+... | ..+++++|+++ +
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 457889999999999887654420 1 23689999955 8
Q ss_pred hccCCC-------CCCeeEEecCCccc-C----CCccEEEeccccc-cCC-hHHHHHHHHHHHHhhc---cCCCCcEEEE
Q 030291 51 VTDMPQ-------TDNLKYIEGDMFQF-I----PPSDAFFFKTVFH-FFD-DEDCLKLLKKCREAIA---SNGERGKVLI 113 (180)
Q Consensus 51 ~~~a~~-------~~~~~~~~~d~~~~-~----~~~D~v~~~~~l~-~~~-~~~~~~~l~~~~~~L~---p~~~~G~~~~ 113 (180)
+..|+. ...+++.++|+.+. . ..+|+|+++=-.. .+. ......+.+.+.+.++ + |+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 888774 35688999998652 1 2499999973321 122 2333355555555555 6 777766
Q ss_pred EEe
Q 030291 114 IDI 116 (180)
Q Consensus 114 ~~~ 116 (180)
...
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 543
No 247
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.20 E-value=0.0095 Score=41.57 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=61.0
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHC-CCCeEEEeeCchhhccCCCCCCeeEEec-CCccc---------CC--C
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAF-PGIKCTVLDLPHAVTDMPQTDNLKYIEG-DMFQF---------IP--P 73 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~~~~~~~-d~~~~---------~~--~ 73 (180)
++|. .+++.++|||+||.+|.++.-..+.. |+..+.++|+-.. .-....+++++ |+.++ +| .
T Consensus 62 dKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 62 DKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred hhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 3444 46889999999999999999887774 8889999997331 11233444444 55442 34 4
Q ss_pred ccEEEecccccc----CChHH-----HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 74 SDAFFFKTVFHF----FDDED-----CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 74 ~D~v~~~~~l~~----~~~~~-----~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.|+|++-..-.. +.|.. +..++--....+.| +|.++.--+
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvcK~w 185 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVCKLW 185 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEEEEe
Confidence 898887433211 11222 22233333456778 666665443
No 248
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.19 E-value=0.0042 Score=45.42 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=63.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchh---hccCCC---------CCCeeEEecCCcc------cCCC-cc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHA---VTDMPQ---------TDNLKYIEGDMFQ------FIPP-SD 75 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~---~~~a~~---------~~~~~~~~~d~~~------~~~~-~D 75 (180)
....|||+|+|+|..+...+... ...+...|.+.. +....+ ...+.....+.-. ..+. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35679999999997777666654 667888887552 222221 1233333332211 1235 89
Q ss_pred EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 76 AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 76 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
+|+++.++++-.... .++..++..|.. ++.+++...
T Consensus 165 lilasDvvy~~~~~e--~Lv~tla~ll~~---~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEESFE--GLVKTLAFLLAK---DGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCcch--hHHHHHHHHHhc---CCeEEEEEe
Confidence 999999998777666 778999999988 775555443
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.14 E-value=0.0011 Score=50.09 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=60.5
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcc-----
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQ----- 69 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~----- 69 (180)
|++++++.+. ..++..++|.=+|.|..+..+++..+..+++++|... ++..+++ ..+++++++++.+
T Consensus 8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 3456777776 6778899999999999999999987668999999944 7777754 3589999988854
Q ss_pred ---cCCCccEEEec
Q 030291 70 ---FIPPSDAFFFK 80 (180)
Q Consensus 70 ---~~~~~D~v~~~ 80 (180)
....+|.|++.
T Consensus 86 ~~~~~~~vDgIl~D 99 (305)
T TIGR00006 86 DELLVTKIDGILVD 99 (305)
T ss_pred HhcCCCcccEEEEe
Confidence 11358888874
No 250
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.13 E-value=0.0023 Score=48.33 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=91.8
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCcc-cCC------C-----c
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQ-FIP------P-----S 74 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~-~~~------~-----~ 74 (180)
...|+-+|||.-.-..++-.- ++.+++-+|+|++++.-++ ....+++..|+.+ ..+ . .
T Consensus 93 ~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p 171 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP 171 (297)
T ss_pred ccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence 578999999885544443222 2678899999986655543 2378999999973 221 2 4
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee-eCCCCCchhhhhhhhcccee-e-EeecCCcccCHHH
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV-IDEKEDDRELTESKLLFDIF-M-NFNVGGKERTEQE 151 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 151 (180)
-++++-+++.|++.+...++++.+...+.| |-.++.+.. .........-.......... . .........+..+
T Consensus 172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~----gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e 247 (297)
T COG3315 172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAP----GSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAE 247 (297)
T ss_pred eEEEeccccccCCHHHHHHHHHHHHHhCCC----CceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHH
Confidence 478899999999999999999999999998 555555542 11110000000000011000 0 0001112346899
Q ss_pred HHHHHHHcCCeEEEEe
Q 030291 152 WGSLFVNAGFTHYKIA 167 (180)
Q Consensus 152 ~~~~l~~aGf~~~~~~ 167 (180)
+...+.+.||......
T Consensus 248 ~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 248 IETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHhcCEEEEecC
Confidence 9999999999887663
No 251
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.07 E-value=0.0041 Score=44.18 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcccHHHHHHH---HHC-CCCeEEEeeCc--hhhccCCC----CCCeeEEecCCccc--------C---CC
Q 030291 15 GLRSMVDVGGGTGAFARIIS---EAF-PGIKCTVLDLP--HAVTDMPQ----TDNLKYIEGDMFQF--------I---PP 73 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~---~~~-~~~~~~~~D~~--~~~~~a~~----~~~~~~~~~d~~~~--------~---~~ 73 (180)
.++.|+|+|.-.|.-+..++ +.. +..+++++|+. ..-..+.+ .++|+++.+|-.++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 57899999988887666554 343 77899999982 22222223 48999999998652 1 12
Q ss_pred ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+|+. ..-|...+.. +.|+.....+++ |+++++-|+.
T Consensus 112 ~vlVil-Ds~H~~~hvl--~eL~~y~plv~~---G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVIL-DSSHTHEHVL--AELEAYAPLVSP---GSYLIVEDTI 149 (206)
T ss_dssp SEEEEE-SS----SSHH--HHHHHHHHT--T---T-EEEETSHH
T ss_pred ceEEEE-CCCccHHHHH--HHHHHhCccCCC---CCEEEEEecc
Confidence 334443 3333334444 558889999999 8888887664
No 252
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0016 Score=46.26 Aligned_cols=99 Identities=18% Similarity=0.333 Sum_probs=69.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcc---cCC--CccEEEecc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQ---FIP--PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~---~~~--~~D~v~~~~ 81 (180)
..++.+||+||-|-|.....+.+..|..++ .++. ++++.+.+. ..|+-.+.+-..+ .++ .||-|+.--
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~-IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHW-IIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceE-EEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence 467899999999999998888777665444 5555 667766664 5677666654433 333 599998754
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.-.+.++.. .+..-+.+.||| +|.+-.+...
T Consensus 178 y~e~yEdl~--~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 178 YSELYEDLR--HFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred hhhHHHHHH--HHHHHHhhhcCC---CceEEEecCc
Confidence 434444444 788899999999 8877666543
No 253
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.04 E-value=0.00029 Score=54.48 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=36.8
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCC
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDM 67 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~ 67 (180)
.++||+=||.|.++..+++.. .+++|+|..+ +++.|+. ..|++|..++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 379999999999999998884 4699999955 8888874 56889988765
No 254
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.001 Score=52.77 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=51.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCccc---C---CCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF---I---PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~---~---~~~D~v~~ 79 (180)
..+..+++|+=||.|.++..+++. ..+++++|+++ +++.|++ ..|++|..++..+. . ..+|.|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 346679999999999999999977 56799999955 8888764 46689999988552 1 25899987
No 255
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.91 E-value=0.02 Score=44.72 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCCeEEEeCCcccHHHHHHH--------HH-------CCCCeEEEeeCch-hhc-cCCC------------------CCC
Q 030291 15 GLRSMVDVGGGTGAFARIIS--------EA-------FPGIKCTVLDLPH-AVT-DMPQ------------------TDN 59 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~--------~~-------~~~~~~~~~D~~~-~~~-~a~~------------------~~~ 59 (180)
..-+|+|+|||+|.++..+. +. .|..++..-|+|. ... -.+. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 36689999999998765443 22 1456778888753 111 0110 001
Q ss_pred -e--eEEecCCcc---cCCCccEEEeccccccCCh------------------------------------HHHHHHHHH
Q 030291 60 -L--KYIEGDMFQ---FIPPSDAFFFKTVFHFFDD------------------------------------EDCLKLLKK 97 (180)
Q Consensus 60 -~--~~~~~d~~~---~~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~ 97 (180)
+ ..+.+++.. +..+.++++++.++|++.. .++..+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222355555 2235999999999998852 023445666
Q ss_pred HHHhhccCCCCcEEEEEEeeeCCCCCc-hh-hhhh------hhcccee--e--------EeecCCcccCHHHHHHHHHHc
Q 030291 98 CREAIASNGERGKVLIIDIVIDEKEDD-RE-LTES------KLLFDIF--M--------NFNVGGKERTEQEWGSLFVNA 159 (180)
Q Consensus 98 ~~~~L~p~~~~G~~~~~~~~~~~~~~~-~~-~~~~------~~~~~~~--~--------~~~~~~~~~~~~~~~~~l~~a 159 (180)
=++-|.| ||.+++.-...+..... .. .... ..+.++. + ....+....+.+|+++.+++.
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 6678999 99999876554321111 00 0000 0000100 0 001223456899999999988
Q ss_pred C-CeEEEEe
Q 030291 160 G-FTHYKIA 167 (180)
Q Consensus 160 G-f~~~~~~ 167 (180)
| |++.++.
T Consensus 300 gsF~I~~le 308 (386)
T PLN02668 300 GSFAIDKLE 308 (386)
T ss_pred CCEEeeeeE
Confidence 7 5555444
No 256
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.84 E-value=0.0051 Score=47.10 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=73.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-------CCCeeEEecCCcccC---CCccEEEeccc
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-------TDNLKYIEGDMFQFI---PPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~~~~~~~d~~~~~---~~~D~v~~~~~ 82 (180)
..+.+|+|.=+|-|.++..++... ..+++++|+ |......++ ...++.+++|..... +.+|-|+++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 458899999999999999999885 233999999 446665553 455889999997633 45999999665
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
- ... +++....+.+++ ||.+-..+....
T Consensus 266 ~----~a~--~fl~~A~~~~k~---~g~iHyy~~~~e 293 (341)
T COG2520 266 K----SAH--EFLPLALELLKD---GGIIHYYEFVPE 293 (341)
T ss_pred C----cch--hhHHHHHHHhhc---CcEEEEEeccch
Confidence 3 233 789999999999 788877775443
No 257
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.81 E-value=0.024 Score=38.60 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=62.0
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCe-eEEecCCcc----cCCCccEEEeccccccCCh-
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNL-KYIEGDMFQ----FIPPSDAFFFKTVFHFFDD- 88 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~-~~~~~d~~~----~~~~~D~v~~~~~l~~~~~- 88 (180)
+.+.+=+|+..-+.-...++.. ..++..+|..+ .++.-- ..++ ++.+.|+.. ....||.+.+.++++|+.-
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~-~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEF-RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccc-ccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 4567778887655554444443 45688888644 222111 1222 233344432 2346999999999988721
Q ss_pred --------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 89 --------EDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 89 --------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..-...+.+++++||| ||.+++.-+...+
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~---GG~L~l~vPvG~d 116 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKP---GGLLFLGVPVGTD 116 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhcc---CCeEEEEeecCCc
Confidence 1223669999999999 9999998776543
No 258
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.80 E-value=0.039 Score=42.36 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=67.0
Q ss_pred ccCCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC---CcccCC-CccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQFIP-PSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~~~~-~~D~v~~~~~l~~~ 86 (180)
.+++++|+=+|+| .|..+..+++.. +++++++|.++ -.+.+++...-.++... ..+... .+|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 6788899988877 356777788876 59999999966 78888775555555543 211222 3999887444 2
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
..+....+.|++ +|.+++.....
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 458888899999 99999988763
No 259
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0083 Score=47.64 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=72.5
Q ss_pred cCCC-eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC-----CCCCeeEEecCCcc---cCCCccEEEecccc
Q 030291 14 QGLR-SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-----QTDNLKYIEGDMFQ---FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-----~~~~~~~~~~d~~~---~~~~~D~v~~~~~l 83 (180)
.+.. +++.+|||...++..+.+.. ...++.+|.|+ .++... ...-.++...|+.. +.++||+|+..+.+
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcc
Confidence 3444 89999999999888887774 33589999976 444332 24556777777754 34579999999988
Q ss_pred ccCChH--------HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDE--------DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~--------~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+++... .....+.++.+++++ ||+.+.....
T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~ 163 (482)
T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV 163 (482)
T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence 877422 223567899999999 8998887763
No 260
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.76 E-value=0.0013 Score=41.42 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL 47 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~ 47 (180)
.+....+|||||.|.+...|.+. +....|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 35678999999999999999998 555788885
No 261
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.74 E-value=0.047 Score=39.72 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=50.0
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-----CCCeeEEecCCcccCC-----CccEEEec--
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----TDNLKYIEGDMFQFIP-----PSDAFFFK-- 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----~~~~~~~~~d~~~~~~-----~~D~v~~~-- 80 (180)
-.+++||-+|= .-..+.+++...+..+++.+|+.+ .++..++ .-+++....|+..++| .||+++..
T Consensus 43 L~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 43 LEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred ccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC
Confidence 35788999983 334555566566678999999966 6666653 4459999999987665 59998872
Q ss_pred cccccCChHHHHHHHHHHHHhhcc
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
.++ +...-++.+..+.||.
T Consensus 122 yT~-----~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 YTP-----EGLKLFLSRGIEALKG 140 (243)
T ss_dssp SSH-----HHHHHHHHHHHHTB-S
T ss_pred CCH-----HHHHHHHHHHHHHhCC
Confidence 332 3455889999999998
No 262
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.024 Score=44.05 Aligned_cols=109 Identities=12% Similarity=0.191 Sum_probs=74.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC--CeEEEeeCch-hhccCCC------CCCeeEEecCCcc---cCC---CccEE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG--IKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---FIP---PSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~--~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~~~---~~D~v 77 (180)
..++.+|||..++.|.=|..+++..++ ..++++|.+. -+...+. ..++...+.|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 467799999999999999988888654 5669999954 4444432 3455666766532 112 39999
Q ss_pred Ee------ccccccCCh--------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 78 FF------KTVFHFFDD--------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 78 ~~------~~~l~~~~~--------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
++ .+++.--|+ ..+.++|....+.||| ||.++.+.+.......+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~eENE 297 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTPEENE 297 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCchhcCH
Confidence 86 334432222 2355899999999999 89888887765544433
No 263
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.46 E-value=0.019 Score=44.22 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=77.2
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH--------C--------CCCeEEEeeCch-hhcc-CCC----------CCCe--eE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA--------F--------PGIKCTVLDLPH-AVTD-MPQ----------TDNL--KY 62 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~--------~--------~~~~~~~~D~~~-~~~~-a~~----------~~~~--~~ 62 (180)
.+..-+|+|+||.+|.++..+... + |...++.-|+|. .... .+. ..++ ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456678999999999988765432 1 235778888854 1111 111 2333 23
Q ss_pred EecCCcc---cCCCccEEEeccccccCCh-------------------------------------HHHHHHHHHHHHhh
Q 030291 63 IEGDMFQ---FIPPSDAFFFKTVFHFFDD-------------------------------------EDCLKLLKKCREAI 102 (180)
Q Consensus 63 ~~~d~~~---~~~~~D~v~~~~~l~~~~~-------------------------------------~~~~~~l~~~~~~L 102 (180)
+.+++.+ +..+.|++++..++|++.. .++..+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 4577766 2336999999999988742 12334555556778
Q ss_pred ccCCCCcEEEEEEeeeCCCCCchh--------hhhhh------hccceeeE--eecCCcccCHHHHHHHHHHcC-CeEEE
Q 030291 103 ASNGERGKVLIIDIVIDEKEDDRE--------LTESK------LLFDIFMN--FNVGGKERTEQEWGSLFVNAG-FTHYK 165 (180)
Q Consensus 103 ~p~~~~G~~~~~~~~~~~~~~~~~--------~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~l~~aG-f~~~~ 165 (180)
+| ||.+++.-...++...... +...+ ...+.... ...+...++.+|+.+.+++.| |++.+
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~ 250 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEK 250 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEE
Confidence 99 8888888776655211110 00000 00000000 012234578999999999776 55544
Q ss_pred E
Q 030291 166 I 166 (180)
Q Consensus 166 ~ 166 (180)
+
T Consensus 251 l 251 (334)
T PF03492_consen 251 L 251 (334)
T ss_dssp E
T ss_pred E
Confidence 4
No 264
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=96.26 E-value=0.011 Score=41.47 Aligned_cols=84 Identities=21% Similarity=0.365 Sum_probs=57.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC---------CCCeeEEecCCccc------------CCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ---------TDNLKYIEGDMFQF------------IPP 73 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~~~~~~~d~~~~------------~~~ 73 (180)
+...|+.+|||--....++....++.+++-+|++++++..++ ..+.+++..|+.+. ...
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345899999999999888888767888999999885555443 12356799999641 113
Q ss_pred ccEEEeccccccCChHHHHHHHHHH
Q 030291 74 SDAFFFKTVFHFFDDEDCLKLLKKC 98 (180)
Q Consensus 74 ~D~v~~~~~l~~~~~~~~~~~l~~~ 98 (180)
.-++++-+++.|++......+++.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 5588889999999998877777765
No 265
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.024 Score=39.73 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=62.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCccc---C---CCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQF---I---PPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~~---~---~~~D~v~~~ 80 (180)
.+.++||+=+|+|.++...+.++ -.+++.+|.+. .....++ ..++.++..|.... . +.||+|+.-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 47889999999999999998886 45789999854 4444432 47888888888532 1 149999983
Q ss_pred cccc-cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFH-FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~-~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
=-++ -+-+....-.+..-..+|+| +.+++++..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~ 155 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHD 155 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeC
Confidence 3332 11122212112224478999 555555543
No 266
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.19 E-value=0.026 Score=42.40 Aligned_cols=107 Identities=13% Similarity=0.123 Sum_probs=74.1
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCccc----CC-CccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQF----IP-PSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~----~~-~~D~v~~ 79 (180)
..++.+|||..++.|.-+..+++... ...+++.|.+. .+...+. ..++.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999988865 66899999854 4444432 45677776666432 23 4999996
Q ss_pred ------ccccccCCh--------------HHHHHHHHHHHHhh----ccCCCCcEEEEEEeeeCCCC
Q 030291 80 ------KTVFHFFDD--------------EDCLKLLKKCREAI----ASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 80 ------~~~l~~~~~--------------~~~~~~l~~~~~~L----~p~~~~G~~~~~~~~~~~~~ 122 (180)
.+++..-++ ..+.++|+.+.+.+ +| ||.++.+........
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSLSPEE 226 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHHHGGG
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccHHHHH
Confidence 223333332 13457899999999 99 888888776554443
No 267
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.13 E-value=0.0065 Score=45.95 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=48.8
Q ss_pred CcccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC-----CCCeeEEecCCcc
Q 030291 1 MATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQ 69 (180)
Q Consensus 1 ~~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~ 69 (180)
|.+++++.+. ..++..++|.=-|.|..+..+++..|+.+++++|- +.+++.+++ ..++.++++++.+
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 3456677776 77888999999999999999999998899999999 557766654 4788888888843
No 268
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.0017 Score=43.78 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=37.8
Q ss_pred CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 72 PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 72 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+.|+|++.++++|+.-.+-..+++.|.+.||| ||++-++-+
T Consensus 46 ns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 46 NSVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 369999999999999988888999999999999 999888654
No 269
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.91 E-value=0.0089 Score=46.31 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=51.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCC--------------------------------C-------eEEEeeCch-hhc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPG--------------------------------I-------KCTVLDLPH-AVT 52 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~--------------------------------~-------~~~~~D~~~-~~~ 52 (180)
+.+...++|-=||+|.+....+...++ + .++++|+.. +++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 556679999999999998876655421 1 267999955 888
Q ss_pred cCCC-------CCCeeEEecCCcc-cC--CCccEEEec
Q 030291 53 DMPQ-------TDNLKYIEGDMFQ-FI--PPSDAFFFK 80 (180)
Q Consensus 53 ~a~~-------~~~~~~~~~d~~~-~~--~~~D~v~~~ 80 (180)
.|+. .+.|+|.+.|+.. .. ..+|+||++
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 8874 5779999999965 22 369999996
No 270
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.90 E-value=0.0053 Score=38.92 Aligned_cols=87 Identities=13% Similarity=0.214 Sum_probs=42.5
Q ss_pred CccEEEeccccccC----ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccC
Q 030291 73 PSDAFFFKTVFHFF----DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERT 148 (180)
Q Consensus 73 ~~D~v~~~~~l~~~----~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (180)
.||+|+|.++.-++ .|+....+++++.+.|+| | ++++.++- + ...+........... .....-...
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---G-G~lilEpQ---~--w~sY~~~~~~~~~~~-~n~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---G-GILILEPQ---P--WKSYKKAKRLSEEIR-ENYKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---E-EEEEEE--------HHHHHTTTTS-HHHH-HHHHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---C-CEEEEeCC---C--cHHHHHHhhhhHHHH-hHHhceEEC
Confidence 48999998775433 577788999999999999 4 55554431 1 111111110000000 000001135
Q ss_pred HHHHHHHHHH--cCCeEEEEeec
Q 030291 149 EQEWGSLFVN--AGFTHYKIAPI 169 (180)
Q Consensus 149 ~~~~~~~l~~--aGf~~~~~~~~ 169 (180)
++.+.+.|.+ -||..++....
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE--
T ss_pred hHHHHHHHHhcccceEEEEEccc
Confidence 6678888887 59998876544
No 271
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.77 E-value=0.058 Score=39.29 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH-CCCCeEEEeeCch-----hhccCCCCCCeeEEecCCcccC------CCccEEEec
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA-FPGIKCTVLDLPH-----AVTDMPQTDNLKYIEGDMFQFI------PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~-~~~~~~~~~D~~~-----~~~~a~~~~~~~~~~~d~~~~~------~~~D~v~~~ 80 (180)
++++.+||-+|+++|......... .|.--+++++.+. .+..|++..|+-.+.-|+..+. +-.|+|++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 688999999999999988777765 4666788888732 5777777888888888885432 24677666
Q ss_pred cccccCChHH-HHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDED-CLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~-~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
-+..++ .+-+.-+....||+ ||.++++-.
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk~---gGhfvisik 262 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLKN---GGHFVISIK 262 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhcc---CCeEEEEEe
Confidence 233333 33445577789999 999998754
No 272
>PRK10742 putative methyltransferase; Provisional
Probab=95.67 E-value=0.021 Score=41.84 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=51.5
Q ss_pred cccccccccccCCC--eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-h-------hccCC------C--CCCeeEEec
Q 030291 4 LLVKDCRPIFQGLR--SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-A-------VTDMP------Q--TDNLKYIEG 65 (180)
Q Consensus 4 ~l~~~~~~~~~~~~--~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~-------~~~a~------~--~~~~~~~~~ 65 (180)
.|++.+. ++++. +|||+=+|+|..+..++.. +++++.+|-+. + +..+. . ..+++++++
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3555665 66766 9999999999999999988 78899999643 2 22211 0 146888888
Q ss_pred CCcccC----CCccEEEec
Q 030291 66 DMFQFI----PPSDAFFFK 80 (180)
Q Consensus 66 d~~~~~----~~~D~v~~~ 80 (180)
|..+.+ ..||+|++-
T Consensus 153 da~~~L~~~~~~fDVVYlD 171 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLD 171 (250)
T ss_pred cHHHHHhhCCCCCcEEEEC
Confidence 885532 258998863
No 273
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.62 E-value=0.0064 Score=48.57 Aligned_cols=55 Identities=20% Similarity=0.356 Sum_probs=44.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ 69 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~ 69 (180)
++....++|+-||||.++..+++.. .+++|++++. .+..|+. -.|.+|+++-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 5677889999999999999998884 4699999954 8888874 4788999995534
No 274
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.51 E-value=0.11 Score=43.84 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCeEEEeCCcccHHHHHHHHHC-------C-----CCeEEEeeC-c---hhhccCC----------------------C-
Q 030291 16 LRSMVDVGGGTGAFARIISEAF-------P-----GIKCTVLDL-P---HAVTDMP----------------------Q- 56 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~-------~-----~~~~~~~D~-~---~~~~~a~----------------------~- 56 (180)
.-+|+|+|=|+|.+.....+.+ | ..+++.+|. + +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999777665433 3 357888885 2 1111110 0
Q ss_pred ------CC--CeeEEecCCcccC----CCccEEEecc-ccccCChHHHHHHHHHHHHhhccCCCCcEEE
Q 030291 57 ------TD--NLKYIEGDMFQFI----PPSDAFFFKT-VFHFFDDEDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 57 ------~~--~~~~~~~d~~~~~----~~~D~v~~~~-~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
.. ++++..+|+.+.+ ..+|+++.-. .-..-|+--..++++++++.++| ||.+.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEE
Confidence 12 3446667775422 2489988743 33333333345889999999999 55554
No 275
>KOG2730 consensus Methylase [General function prediction only]
Probab=95.36 E-value=0.012 Score=42.20 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ 69 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~ 69 (180)
....|+|.-||.|..+..++.+++. ++++|++. -+..|+. ..+++|+++|+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5677999999999999999988554 99999955 5666653 5799999999976
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.30 E-value=0.41 Score=37.16 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=67.0
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc--------ccC-C-CccEEEeccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF--------QFI-P-PSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~--------~~~-~-~~D~v~~~~~ 82 (180)
...+++=+|||+ |.++..+++...-.+++.+|.++ .++.|++..........-. +.. + .+|+++-...
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 344899999999 99998888888778899999955 8888876222222111110 111 2 4999886444
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
. + ..+..+.+++++ +|.+.+.......
T Consensus 248 ~-----~---~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 S-----P---PALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred C-----H---HHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 1 1 569999999999 9999998877555
No 277
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.018 Score=38.61 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=66.6
Q ss_pred cccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc-cCCCc
Q 030291 4 LLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ-FIPPS 74 (180)
Q Consensus 4 ~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~-~~~~~ 74 (180)
++++.+. -++..+.+|+|+|.|......++.. -...+++++.+ .+...+- ..+..|..-|.+. ++..|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 4455555 4667899999999999988877774 34578999854 4444431 5677788888866 45556
Q ss_pred cEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 75 DAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..++...+-.-++ .+-.+++.-+.. +..++-.-+..+.
T Consensus 140 ~~vviFgaes~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFGAESVMP-----DLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred ceEEEeehHHHHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 6555533322222 334455556666 6777766554443
No 278
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.26 E-value=0.041 Score=40.57 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=25.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHC--------CCCeEEEeeCch
Q 030291 16 LRSMVDVGGGTGAFARIISEAF--------PGIKCTVLDLPH 49 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~--------~~~~~~~~D~~~ 49 (180)
+-+|+|+|+|+|.++..++... ...+++.+|.|+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 4699999999999999988763 246899999865
No 279
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.22 E-value=0.089 Score=35.30 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ 69 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~ 69 (180)
..-|||+|-|.|..-..|.+.+|+.+++++|-.-......-.+.-.++.+|+.+
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE 82 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH
Confidence 467999999999999999999999999999942111111113445667888854
No 280
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.09 E-value=0.29 Score=37.32 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=67.8
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC-c--cc--------C--CCccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM-F--QF--------I--PPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~-~--~~--------~--~~~D~v 77 (180)
.+.++++|=+|+|+ |..+...++.+.-.+++.+|+.+ .++.|++.+--.+.+..- . +. . ..+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 57789999999998 88888888888667899999965 899888721111111111 0 10 1 138888
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
+-...++ ..++....++++ +|.++++.+..+
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAE 277 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCCC
Confidence 8766654 557778899999 999888876543
No 281
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.02 E-value=0.072 Score=39.95 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=67.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------CCCeeEEecCCcc-----cCCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------TDNLKYIEGDMFQ-----FIPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------~~~~~~~~~d~~~-----~~~~~D~ 76 (180)
..+++++|=||.|.|...+...++-.--.+...|+.+ .++..++ .+++....+|-.. ....||+
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 6789999999999999988877663222466777654 3433332 5788888887644 2346999
Q ss_pred EEec--cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 77 FFFK--TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 77 v~~~--~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
|+.- ....--...-...+..-+.++||+ +|.+....
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEec
Confidence 9973 233222223344678888999999 78777754
No 282
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.91 E-value=0.052 Score=40.80 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=53.3
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCC-CeEEEeeC-chhhccCCC-----CCCeeEEecCCcc
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPG-IKCTVLDL-PHAVTDMPQ-----TDNLKYIEGDMFQ 69 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~-----~~~~~~~~~d~~~ 69 (180)
.+++++.+. .++....+|.--|.|..+..+++.++. .+++++|- +.+++.+++ .+++++++.++.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 345566666 777899999999999999999999864 45999999 458888875 5689999998843
No 283
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.83 E-value=0.037 Score=41.72 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=40.3
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCC----cccC----CCccE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDM----FQFI----PPSDA 76 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~----~~~~----~~~D~ 76 (180)
+...++||||+|....--.|.....+-++++.|+.+ .++.|++ ..+|+++...- +... ..||+
T Consensus 101 ~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 101 PEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp S---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 346789999999986654444333377899999955 7888864 56788875532 2211 25999
Q ss_pred EEeccccccCChH
Q 030291 77 FFFKTVFHFFDDE 89 (180)
Q Consensus 77 v~~~~~l~~~~~~ 89 (180)
.+|+=-+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998777655443
No 284
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.53 E-value=0.4 Score=39.16 Aligned_cols=96 Identities=9% Similarity=0.085 Sum_probs=63.5
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc--------------cc-------
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF--------------QF------- 70 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~--------------~~------- 70 (180)
.++.+|+=+|+|. |..+...++.. +++++++|... .++.+++.+ .++...|.. +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 4689999999998 77777777776 67899999954 777776522 222211110 00
Q ss_pred -----CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 -----IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 -----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
...+|++|.......-+.+. .+.++..+.+|| ||.++....
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~--lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPK--LITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcc--hHHHHHHHhcCC---CCEEEEEcc
Confidence 13589998866543222232 225999999999 888887765
No 285
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.26 E-value=0.097 Score=42.03 Aligned_cols=95 Identities=19% Similarity=0.373 Sum_probs=59.8
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-----chhhccCCCCCCeeEEecCCcccC---C-CccEEEecccc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-----PHAVTDMPQTDNLKYIEGDMFQFI---P-PSDAFFFKTVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-----~~~~~~a~~~~~~~~~~~d~~~~~---~-~~D~v~~~~~l 83 (180)
...-+.|+|..+|.|.++.+|.+. . +..... +..+...-..+=| -.-.|..+.+ | .||++.+.+++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~--~--VWVMNVVP~~~~ntL~vIydRGLI-G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD--P--VWVMNVVPVSGPNTLPVIYDRGLI-GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC--C--ceEEEecccCCCCcchhhhhcccc-hhccchhhccCCCCcchhheehhhhh
Confidence 345678999999999999999765 3 333322 1111111111111 1122333332 3 59999999888
Q ss_pred ccCChH-HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDDE-DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~~-~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
....+. ....+|-++=|.|+| +|.+++-|
T Consensus 438 s~~~~rC~~~~illEmDRILRP---~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP---GGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC---CceEEEec
Confidence 776542 344789999999999 99998865
No 286
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.11 E-value=0.092 Score=39.72 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=63.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC--------------------CCCeEEEeeCc---hhhccCCC---------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF--------------------PGIKCTVLDLP---HAVTDMPQ--------------- 56 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~--------------------~~~~~~~~D~~---~~~~~a~~--------------- 56 (180)
+..+||.||+|.|.-..+++..+ +...++.+|+. .++.+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999986444443332 12478999972 23333221
Q ss_pred --------CCCeeEEecCCcccC----------CCccEEEeccccccCC---hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 57 --------TDNLKYIEGDMFQFI----------PPSDAFFFKTVFHFFD---DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 57 --------~~~~~~~~~d~~~~~----------~~~D~v~~~~~l~~~~---~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.-+++|.+.|++... +..|+|-..+++..+- -.+..++|.++-..++| |-.++++|
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvD 242 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVD 242 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEc
Confidence 235778888886511 2367776666554332 23345899999999999 77777776
Q ss_pred e
Q 030291 116 I 116 (180)
Q Consensus 116 ~ 116 (180)
.
T Consensus 243 S 243 (315)
T PF11312_consen 243 S 243 (315)
T ss_pred C
Confidence 4
No 287
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.02 E-value=0.047 Score=39.69 Aligned_cols=77 Identities=25% Similarity=0.403 Sum_probs=44.1
Q ss_pred cccccccccccCC--CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhh----ccC----CC--------CCCeeEEec
Q 030291 4 LLVKDCRPIFQGL--RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAV----TDM----PQ--------TDNLKYIEG 65 (180)
Q Consensus 4 ~l~~~~~~~~~~~--~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~----~~a----~~--------~~~~~~~~~ 65 (180)
.|++.+. ++++ .+|||.-+|.|.-+..++.. +++++++|-+..+ ..+ .+ ..+++++++
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3455555 5554 38999999999999888766 7789999975522 211 11 258999999
Q ss_pred CCcccC----CCccEEEeccccc
Q 030291 66 DMFQFI----PPSDAFFFKTVFH 84 (180)
Q Consensus 66 d~~~~~----~~~D~v~~~~~l~ 84 (180)
|..+.+ .++|+|+.-=|+.
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S--
T ss_pred CHHHHHhhcCCCCCEEEECCCCC
Confidence 987743 3699999854543
No 288
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.79 E-value=0.17 Score=39.75 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=50.5
Q ss_pred CCCeeEEecCCcc-----cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 57 TDNLKYIEGDMFQ-----FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 57 ~~~~~~~~~d~~~-----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+++++++++.+ +.+++|.++.+..+.++++....+.++++.+.++| ||++++-...
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~ 336 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAA 336 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCC
Confidence 5889999999866 23469999999999999999999999999999999 9999986544
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.59 E-value=1 Score=35.25 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=62.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC----Ccc------cCCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD----MFQ------FIPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d----~~~------~~~~~D~v~~~ 80 (180)
..++.+||.+|+|. |..+..+++.....+++++|.++ ..+.+++.....++... ..+ ....+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45678899999988 88888888887433588888744 66666543222222211 111 11248988764
Q ss_pred ccc---------------ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVF---------------HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l---------------~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
-.- +..++.. ..+.++.+.+++ +|.+++....
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~---~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRP--DALREAIQAVRK---GGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccCch--HHHHHHHHHhcc---CCEEEEEcCC
Confidence 211 1112333 568899999999 8999887643
No 290
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.57 E-value=0.68 Score=30.30 Aligned_cols=87 Identities=16% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCeeEEecCCcc---cC-CCccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhh
Q 030291 57 TDNLKYIEGDMFQ---FI-PPSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESK 131 (180)
Q Consensus 57 ~~~~~~~~~d~~~---~~-~~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~ 131 (180)
.-.+++..+|+.+ .+ ..+|+++.-.. -..-++--..++++++++.+++ || .+.+-
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~---~~-~l~Ty---------------- 89 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKP---GG-TLATY---------------- 89 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEE---EE-EEEES----------------
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCC---Cc-EEEEe----------------
Confidence 3456778888855 22 46999887542 2222222244889999999999 44 33311
Q ss_pred hccceeeEeecCCcccCHHHHHHHHHHcCCeEEEEeecCCceeEEEE
Q 030291 132 LLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYKIAPIFGIKSLIEV 178 (180)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 178 (180)
.....++..|.++||.+.+.-..++...++.+
T Consensus 90 ---------------s~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a 121 (124)
T PF05430_consen 90 ---------------SSAGAVRRALQQAGFEVEKVPGFGRKREMLRA 121 (124)
T ss_dssp -----------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEE
T ss_pred ---------------echHHHHHHHHHcCCEEEEcCCCCCcchheEE
Confidence 12245788999999999888877776444443
No 291
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.064 Score=41.33 Aligned_cols=39 Identities=15% Similarity=0.358 Sum_probs=30.6
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHH----C----CCCeEEEeeCchhh
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEA----F----PGIKCTVLDLPHAV 51 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~----~----~~~~~~~~D~~~~~ 51 (180)
.+.+-.++|||+|+|.++..++.. + ..+++..+|.|+.+
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 455678999999999999887754 2 36799999997633
No 292
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=92.86 E-value=0.14 Score=38.20 Aligned_cols=97 Identities=9% Similarity=0.028 Sum_probs=54.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC----------------CCCeeEEec---CCcc-cCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ----------------TDNLKYIEG---DMFQ-FIP 72 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~----------------~~~~~~~~~---d~~~-~~~ 72 (180)
-..++|||+|||.|.-........ .+++...|.+. .+....- ..-....+. |-.. ...
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-cceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 457899999999998777665553 26677777644 3322110 011111222 1100 112
Q ss_pred --CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 73 --PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 73 --~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.||+|.++-+++......... .-.....+++ +|.++++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~~---D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLY-LLHRPCLLKT---DGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhH-hhhhhhcCCc---cchhhhhh
Confidence 599999988887655554221 3344455566 77777754
No 293
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=92.73 E-value=0.16 Score=37.72 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=30.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC-----CCCeEEEeeC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF-----PGIKCTVLDL 47 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~-----~~~~~~~~D~ 47 (180)
+++...++|.|||.|.++..+.+.. +...++.+|-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5677889999999999999998887 5678999997
No 294
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.66 E-value=1.3 Score=31.40 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=70.5
Q ss_pred cCCCeEEEeCCcccHHHHHHHH----HCCCCeEEEeeCch-hhccCC-CCCCeeEEecCCcccC---------CCc-cEE
Q 030291 14 QGLRSMVDVGGGTGAFARIISE----AFPGIKCTVLDLPH-AVTDMP-QTDNLKYIEGDMFQFI---------PPS-DAF 77 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~----~~~~~~~~~~D~~~-~~~~a~-~~~~~~~~~~d~~~~~---------~~~-D~v 77 (180)
..++.|+|+|.-.|..+..++. .....++.++|++- .++.+. +.+++.++.++-.++. ..| -+.
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 4578899999988876555543 33457899999854 444443 3789999999886531 123 334
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCC
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKE 122 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~ 122 (180)
++...-|+..... ..|+-...+|.. |-++++.|.+..+-+
T Consensus 148 vilDsdHs~~hvL--Ael~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 148 VILDSDHSMEHVL--AELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EEecCCchHHHHH--HHHHHhhhHhhc---CceEEEecccccCCC
Confidence 4455666655555 448888899999 888888887765543
No 295
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.63 E-value=3.8 Score=31.56 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=56.7
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHH-CCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEA-FPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~-~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~ 89 (180)
.+++++||=+|||. |.++..+++. ....+++++|.++ .++.+++... .....+. .....+|+|+-... ..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~-~~~~~~~-~~~~g~d~viD~~G-----~~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE-TYLIDDI-PEDLAVDHAFECVG-----GR 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc-eeehhhh-hhccCCcEEEECCC-----CC
Confidence 35678999999866 5566666664 4456789999854 5555554211 1111111 11124888874222 10
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.....+....+.|++ +|.+++....
T Consensus 234 ~~~~~~~~~~~~l~~---~G~iv~~G~~ 258 (341)
T cd08237 234 GSQSAINQIIDYIRP---QGTIGLMGVS 258 (341)
T ss_pred ccHHHHHHHHHhCcC---CcEEEEEeec
Confidence 011458888999999 9999987753
No 296
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.55 E-value=0.25 Score=35.83 Aligned_cols=95 Identities=21% Similarity=0.417 Sum_probs=62.8
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHC----C--CC---eEEEeeCchhhccCCCCCCeeEEecCCccc---------CC-
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAF----P--GI---KCTVLDLPHAVTDMPQTDNLKYIEGDMFQF---------IP- 72 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~----~--~~---~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~---------~~- 72 (180)
.+.+-.+++|+.+..|.++.-|.++. + +. .++++|+..|.. ...+..+++|+... ++
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 35677899999999999888776653 1 11 389999866432 34566778888541 12
Q ss_pred -CccEEEeccc-----cccCCh----HHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 73 -PSDAFFFKTV-----FHFFDD----EDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 73 -~~D~v~~~~~-----l~~~~~----~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
..|+|+|-+. +|.+.. +.....|.-...+|+| ||.++-
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 5999998543 454433 2333456666789999 676654
No 297
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.50 E-value=0.43 Score=31.88 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=46.1
Q ss_pred eEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cCC--CccEEEeccccccCCh---------HHHHHHHHHH
Q 030291 41 KCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FIP--PSDAFFFKTVFHFFDD---------EDCLKLLKKC 98 (180)
Q Consensus 41 ~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~~--~~D~v~~~~~l~~~~~---------~~~~~~l~~~ 98 (180)
+++++|+.+ +++..++ ..++++++.+=.. ..+ +.|+++.+.. |+|. ......++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 478999955 7777764 3578888765522 222 5888777533 4432 2344779999
Q ss_pred HHhhccCCCCcEEEEEEeeeC
Q 030291 99 REAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 99 ~~~L~p~~~~G~~~~~~~~~~ 119 (180)
.+.|+| ||.+.++-....
T Consensus 79 l~lL~~---gG~i~iv~Y~GH 96 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGH 96 (140)
T ss_dssp HHHEEE---EEEEEEEE--ST
T ss_pred HHhhcc---CCEEEEEEeCCC
Confidence 999999 888888765433
No 298
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.29 E-value=0.13 Score=39.98 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=34.2
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
-+...++|+|.|.|.++..+.-.+ +.++.++|.+. ..++++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHH
Confidence 467889999999999999988777 88999999876 555554
No 299
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=91.98 E-value=0.19 Score=39.91 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc-hhhccCCC-------CCCeeEEecCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP-HAVTDMPQ-------TDNLKYIEGDM 67 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~-------~~~~~~~~~d~ 67 (180)
+..-+||||.|||.++....... .-++++++.- +|.+.+++ ..+|+++.-.-
T Consensus 66 gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 34568999999999999888886 4479999984 48877764 45666665433
No 300
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.72 E-value=0.19 Score=39.15 Aligned_cols=107 Identities=10% Similarity=0.177 Sum_probs=71.4
Q ss_pred ccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc----hhhccCCC------------CCCeeEEecCCc
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP----HAVTDMPQ------------TDNLKYIEGDMF 68 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~----~~~~~a~~------------~~~~~~~~~d~~ 68 (180)
+.+.+. +++.+...|+|+|.|.....++.......-.|+++. ++....++ ...+..+++++.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 445555 788888999999999999888776544344666652 22222221 456788888886
Q ss_pred ccC------CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 69 QFI------PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 69 ~~~------~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
++. +..++|+++.+.. -++...+ +.++..-+++ |-+++-.....+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F-dp~L~lr--~~eil~~ck~---gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF-DPELKLR--SKEILQKCKD---GTRIISSKPLVP 312 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC-CHHHHHh--hHHHHhhCCC---cceEeccccccc
Confidence 632 3588999877642 2333334 6689999999 777777776655
No 301
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.68 E-value=2.6 Score=31.56 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=41.5
Q ss_pred eEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----c-CCCccEEEecc
Q 030291 18 SMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----F-IPPSDAFFFKT 81 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----~-~~~~D~v~~~~ 81 (180)
+++|+-||.|.++..+.+.. -..+.++|..+ +.+..+....-...+.|+.+ . .+.+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999999888774 33467899854 44444432111255666644 1 34699988753
No 302
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.43 E-value=0.58 Score=30.63 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=42.4
Q ss_pred cCCCeEEEeCCcccH-HHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCC----CccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGA-FARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP----PSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~----~~D~v~~~~~l~~~~~ 88 (180)
.+..+|+|||-|.=. .+..|.+. +..++++|..+. .+ ...+.++..|++++.. ..|+|.+... .
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 356699999999865 44555555 688999998543 22 3678889999987532 5889888543 2
Q ss_pred HHHHHHHHHHHHhhc
Q 030291 89 EDCLKLLKKCREAIA 103 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~ 103 (180)
++....+-++++.+.
T Consensus 81 ~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 81 PELQPPILELAKKVG 95 (127)
T ss_dssp TTSHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhC
Confidence 222344666666664
No 303
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=91.43 E-value=2.7 Score=33.04 Aligned_cols=107 Identities=14% Similarity=0.247 Sum_probs=57.9
Q ss_pred ccccccccccCCCeEEEeCCcccH----HHHHHHHH---CCCCeEEEeeCc----h-hhccCCC---------CCCeeEE
Q 030291 5 LVKDCRPIFQGLRSMVDVGGGTGA----FARIISEA---FPGIKCTVLDLP----H-AVTDMPQ---------TDNLKYI 63 (180)
Q Consensus 5 l~~~~~~~~~~~~~iLdiG~G~G~----~~~~l~~~---~~~~~~~~~D~~----~-~~~~a~~---------~~~~~~~ 63 (180)
|++.+. -.....|+|+|.|.|. +...|+++ .|..++|+++.+ . .++...+ .-..+|.
T Consensus 102 IleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 102 ILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 444444 3456688999999985 33344443 267899999982 2 3333321 2344444
Q ss_pred ec--CCcccC-------CCccEEE--eccccccCChH------HHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 64 EG--DMFQFI-------PPSDAFF--FKTVFHFFDDE------DCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 64 ~~--d~~~~~-------~~~D~v~--~~~~l~~~~~~------~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.. +-.+.. ..-+.++ +...+||+.+. ....+|+.++ .|+| -.+++++...
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea 246 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEA 246 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecC
Confidence 42 211211 1222333 45557888632 1234665555 7899 6777777653
No 304
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.05 E-value=2.9 Score=26.98 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=52.2
Q ss_pred cCCCeEEEeCCcccH-HHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC----CCccEEEeccccccCCh
Q 030291 14 QGLRSMVDVGGGTGA-FARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI----PPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~----~~~D~v~~~~~l~~~~~ 88 (180)
...++|+|+|.|-=. .+..|++. ++.++++|+.+. .+ ...+.++..|++++. ...|+|.+... .
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiRp-----p 80 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIRP-----P 80 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecCC-----C
Confidence 455699999998854 45555555 577999998553 23 367889999997643 25888887433 3
Q ss_pred HHHHHHHHHHHHhhc
Q 030291 89 EDCLKLLKKCREAIA 103 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~ 103 (180)
++....+-++++.++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 443355556666654
No 305
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.65 E-value=3.1 Score=31.86 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=55.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~ 89 (180)
.+++++||=.|+|. |..+..+++.. ++++++++.++ ..+.+++..--.++ +..+ ....+|+++..... .
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi--~~~~~~~~~~d~~i~~~~~-----~ 234 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG--GAYDTPPEPLDAAILFAPA-----G 234 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec--cccccCcccceEEEECCCc-----H
Confidence 56788999888654 55666666765 67888888744 56666552211111 1111 12247876543221 1
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+....++|++ +|.+++....
T Consensus 235 ---~~~~~~~~~l~~---~G~~v~~G~~ 256 (329)
T TIGR02822 235 ---GLVPPALEALDR---GGVLAVAGIH 256 (329)
T ss_pred ---HHHHHHHHhhCC---CcEEEEEecc
Confidence 357888899999 9999887753
No 306
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.40 E-value=6.3 Score=29.83 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEecCCcc-cCCCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.+.++|=+|+|. |.++..+++.. +++ +.++|..+ .++.+.... ..|..+ ....+|+|+-... .+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~~~-----~i~~~~~~~~g~Dvvid~~G-----~~- 211 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATGYE-----VLDPEKDPRRDYRAIYDASG-----DP- 211 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhhcc-----ccChhhccCCCCCEEEECCC-----CH-
Confidence 356788888765 77777788776 554 66677643 555544321 112211 1225888876432 22
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..+..+.+.+++ +|.+++....
T Consensus 212 --~~~~~~~~~l~~---~G~iv~~G~~ 233 (308)
T TIGR01202 212 --SLIDTLVRRLAK---GGEIVLAGFY 233 (308)
T ss_pred --HHHHHHHHhhhc---CcEEEEEeec
Confidence 457888899999 9999987653
No 307
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.37 E-value=0.96 Score=32.58 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=55.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCC----------------------------------
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQ---------------------------------- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~---------------------------------- 56 (180)
..+-++.|-.||+|.+.--+.-.. .-..+++.|+.+ +++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 457789999999999766554333 234689999954 8877752
Q ss_pred --------------CCCeeEEecCCcccC-------C-CccEEEecc---ccccCC----hHHHHHHHHHHHHhhccCCC
Q 030291 57 --------------TDNLKYIEGDMFQFI-------P-PSDAFFFKT---VFHFFD----DEDCLKLLKKCREAIASNGE 107 (180)
Q Consensus 57 --------------~~~~~~~~~d~~~~~-------~-~~D~v~~~~---~l~~~~----~~~~~~~l~~~~~~L~p~~~ 107 (180)
.......+.|++++. + ..|+|+.-- -+..|. .....++|..+.++|.+
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 123567788887621 2 379988721 122332 34466899999999954
Q ss_pred CcEEEE
Q 030291 108 RGKVLI 113 (180)
Q Consensus 108 ~G~~~~ 113 (180)
++.+.+
T Consensus 207 ~sVV~v 212 (246)
T PF11599_consen 207 RSVVAV 212 (246)
T ss_dssp T-EEEE
T ss_pred CcEEEE
Confidence 455555
No 308
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.17 E-value=1.5 Score=32.63 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=64.1
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCC---CccEEEeccccccCCh
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIP---PSDAFFFKTVFHFFDD 88 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~---~~D~v~~~~~l~~~~~ 88 (180)
.+.++...+|+|+..|.++..|.++ +..++++|...|.+..-..+.++-...|-+...| +.|..+|-.+ +.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV----Ek 281 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV----EK 281 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh----cC
Confidence 4577889999999999999999988 7889999987776666667778877777766444 4888887555 33
Q ss_pred HHHHHHHHHHHHhhcc
Q 030291 89 EDCLKLLKKCREAIAS 104 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p 104 (180)
+. .+-..+..+|..
T Consensus 282 P~--rv~~li~~Wl~n 295 (358)
T COG2933 282 PA--RVAALIAKWLVN 295 (358)
T ss_pred cH--HHHHHHHHHHHc
Confidence 44 445666777775
No 309
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=90.10 E-value=0.63 Score=34.49 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHHHHHHHHhhcc
Q 030291 29 FARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 29 ~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
+++.|.+..+..++++.|.++ .+..+.+.+-+.-...+ .+....+|+|+..- |-....++++++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 466788888789999999955 77776543333333332 23445689988743 344455777777777777
No 310
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=90.07 E-value=1.7 Score=32.66 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=54.7
Q ss_pred CeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC-cccCCCccEEEeccccccCChHHHH
Q 030291 17 RSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM-FQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 17 ~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~-~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+|+=+|.|. |.+++.+.+......+++.|.+. ....+....-+.-...+. .......|+|+.+-- -....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-----i~~~~ 78 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-----IEATE 78 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-----HHHHH
Confidence 4566666665 67888888887777788998855 455554322221112222 234556899988443 33444
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~ 113 (180)
++++++...|++ |.++.
T Consensus 79 ~~l~~l~~~l~~----g~iv~ 95 (279)
T COG0287 79 EVLKELAPHLKK----GAIVT 95 (279)
T ss_pred HHHHHhcccCCC----CCEEE
Confidence 788888888888 55554
No 311
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.52 E-value=3.2 Score=26.73 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCc---c----cCC--CccEEEeccccccCChHHHHHH
Q 030291 25 GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMF---Q----FIP--PSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 25 G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~---~----~~~--~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
|.|..+..+++... .+++++|.++ ..+.+++..--.+...+-. + ..+ .+|+|+-.-. .. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~---~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SG---DT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SH---HH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cH---HH
Confidence 45788888888874 9999999965 6666665332222222111 1 122 5898876433 22 56
Q ss_pred HHHHHHhhccCCCCcEEEEEEeee
Q 030291 95 LKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 95 l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
++...+++++ +|.+++.....
T Consensus 72 ~~~~~~~l~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRP---GGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEE---EEEEEEESSTS
T ss_pred HHHHHHHhcc---CCEEEEEEccC
Confidence 9999999999 89999987654
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.74 E-value=6.1 Score=30.36 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=55.4
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe---cCCcc---cCCCccEEEeccccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ---FIPPSDAFFFKTVFH 84 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~---~~~~~D~v~~~~~l~ 84 (180)
.++++||=+|+|. |..+..+++.. ++ +++++|.++ .++.+++..-..++. .++.+ ..+.+|+|+-...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 3567888888765 66777777776 55 688888754 666665522111111 11111 1124888775322
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+ ..+....+++++ +|.+++...
T Consensus 245 ---~~---~~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 245 ---HP---SSINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred ---CH---HHHHHHHHHhhc---CCEEEEEcc
Confidence 22 457778889999 999998764
No 313
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.69 E-value=9.4 Score=29.44 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=55.5
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeC---ch-hhccCCCCCCeeEEe---cCCc--ccCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDL---PH-AVTDMPQTDNLKYIE---GDMF--QFIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~---~~-~~~~a~~~~~~~~~~---~d~~--~~~~~~D~v~~~~~l 83 (180)
.++.+||=+|+|. |.++..+++.. ++++++++. ++ ..+.+++.. .+.+. .+.. .....+|+|+-...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~G-a~~v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELG-ATYVNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcC-CEEecCCccchhhhhhcCCCCEEEECcC-
Confidence 4677888888765 66777777776 668888875 22 444444321 12211 1110 01234888776432
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.. ..+.+..+.|++ +|.+++.....
T Consensus 248 ----~~---~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 248 ----VP---PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred ----CH---HHHHHHHHHccC---CcEEEEEecCC
Confidence 22 457888899999 89988876543
No 314
>PRK11524 putative methyltransferase; Provisional
Probab=88.59 E-value=0.31 Score=36.63 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=33.6
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~ 56 (180)
.+++.|||-=+|+|..+.+..+. +-+++|+|+++ ..+.+++
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 67899999999999999887777 66799999954 6666653
No 315
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.23 E-value=2.2 Score=35.00 Aligned_cols=93 Identities=10% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc-----------------------
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----------------------- 69 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----------------------- 69 (180)
++.+++=+|+|. |..+..+++.. ++.++++|... .++.+++. ..+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999998 56666666665 67799999844 66666542 22222222100
Q ss_pred ---cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 70 ---FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 70 ---~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
....+|+|+....+.--+.+. -+.++..+.+|| |+.++-.
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~--Lit~emv~~MKp---GsvIVDl 283 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPK--LITEEMVDSMKA---GSVIVDL 283 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCe--eehHHHHhhCCC---CCEEEEe
Confidence 123699998766554433443 347788899999 6665433
No 316
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=88.11 E-value=1.9 Score=34.81 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=67.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC------CCCeeEEecCCcc----------cCCCcc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ------TDNLKYIEGDMFQ----------FIPPSD 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~~~~~~~d~~~----------~~~~~D 75 (180)
......+|-+|-|.|.+...+....|..+++++++ +++++.+.+ ..+..+...|-.+ ....||
T Consensus 293 ~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 293 LDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 34567788888888999999998999999999999 669998875 1223333222222 122599
Q ss_pred EEEe------ccccccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 AFFF------KTVFHFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 ~v~~------~~~l~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+++. ++.+.+-+. -....+|..++..|.| .|.+.+.-..
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f~inlv~ 418 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPP---RGMFIINLVT 418 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCc---cceEEEEEec
Confidence 8885 122222221 2234788899999999 7777654433
No 317
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.94 E-value=4.3 Score=25.66 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCChHHHHH
Q 030291 24 GGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 24 ~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~~~~~~~ 93 (180)
||.|.++..+++.. .+..++.+|..+ ..+.++.. .+.++.+|..++ ..++|.+++..- ++....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC-----CHHHHH
Confidence 56666776665542 245799999854 65555533 378899999652 236887777332 334334
Q ss_pred HHHHHHHhhccCCCCcEEEE
Q 030291 94 LLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 94 ~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+....+.+.| ...++.
T Consensus 78 ~~~~~~r~~~~---~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNP---DIRIIA 94 (116)
T ss_dssp HHHHHHHHHTT---TSEEEE
T ss_pred HHHHHHHHHCC---CCeEEE
Confidence 45566677777 555555
No 318
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.67 E-value=6.3 Score=29.84 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=55.7
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC---c------ccCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM---F------QFIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~---~------~~~~~~D~v~~~~ 81 (180)
+..+.+||-.|+|. |..+..+++.. +.+++.++.++ ..+.+++.. ++....+- . .....+|+++...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 45677888888764 77777777776 67788888744 555543311 11111111 0 0122589887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. . ..++.+.+.|++ +|.++....
T Consensus 241 g~------~--~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 GT------Q--PTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred CC------H--HHHHHHHHHhhc---CCEEEEECC
Confidence 21 1 458888999999 898887653
No 319
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=87.06 E-value=1.9 Score=35.29 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCeEEEeCCcccHHHHHHHHH----CCCCeEEEeeC-chhhccCC--C----CCCeeEEecCCcc-cCC--CccEEEecc
Q 030291 16 LRSMVDVGGGTGAFARIISEA----FPGIKCTVLDL-PHAVTDMP--Q----TDNLKYIEGDMFQ-FIP--PSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~--~----~~~~~~~~~d~~~-~~~--~~D~v~~~~ 81 (180)
...|+-+|+|-|-+..+.++. ....++++++- |.++...+ + ..+++++-.|+.. ..| ..|++++ .
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence 557789999999887765543 34678899997 44333222 2 6899999999966 233 4888765 3
Q ss_pred ccccCCh-HHHHHHHHHHHHhhcc
Q 030291 82 VFHFFDD-EDCLKLLKKCREAIAS 104 (180)
Q Consensus 82 ~l~~~~~-~~~~~~l~~~~~~L~p 104 (180)
.|..+.| +..++.|.-+.+.|||
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCC
Confidence 3344444 3355889999999999
No 320
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.96 E-value=4.2 Score=32.46 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=55.0
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..+++|+=+|+|. |......++.. +++++++|.++ ....++..+ .+.. +..+.....|+|+..- ...
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G-~~~~--~~~e~v~~aDVVI~at-----G~~-- 268 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEG-YEVM--TMEEAVKEGDIFVTTT-----GNK-- 268 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcC-CEEc--cHHHHHcCCCEEEECC-----CCH--
Confidence 4678999999998 66666666665 77899999854 555555422 2221 1212334689988642 222
Q ss_pred HHHHHH-HHHhhccCCCCcEEEEEE
Q 030291 92 LKLLKK-CREAIASNGERGKVLIID 115 (180)
Q Consensus 92 ~~~l~~-~~~~L~p~~~~G~~~~~~ 115 (180)
.++.. ..+.+++ ||.++.+.
T Consensus 269 -~~i~~~~l~~mk~---GgilvnvG 289 (413)
T cd00401 269 -DIITGEHFEQMKD---GAIVCNIG 289 (413)
T ss_pred -HHHHHHHHhcCCC---CcEEEEeC
Confidence 34554 4889999 77777765
No 321
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.67 E-value=3.5 Score=30.84 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=46.4
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
+|.=||+|. |.++..+.+. +.+++++|.+. .++.+.+...+.....+. +.....|+|+.. ++.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 355567765 3455555555 56799999854 555554332222222222 223468988874 344555577
Q ss_pred HHHHHHhhcc
Q 030291 95 LKKCREAIAS 104 (180)
Q Consensus 95 l~~~~~~L~p 104 (180)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 8888888887
No 322
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.62 E-value=3.5 Score=31.59 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=61.1
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCcc---cCCCccEEEeccccccCCh
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQ---FIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~---~~~~~D~v~~~~~l~~~~~ 88 (180)
+.+|.=||.|. |..+..++--. ++.++.+|++. .+.+... ..++..+-.+... ....+|++|..-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 35677788887 77777666555 77899999964 5555544 5667776666533 3457999887555544455
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVL 112 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~ 112 (180)
+. -+.+++...+|| |+.++
T Consensus 247 Pk--Lvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 PK--LVTREMVKQMKP---GSVIV 265 (371)
T ss_pred ce--ehhHHHHHhcCC---CcEEE
Confidence 65 347888999999 44444
No 323
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.49 E-value=11 Score=27.95 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=54.3
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEe-cCCcc------cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIE-GDMFQ------FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~-~d~~~------~~~~~D~v~~~~~l 83 (180)
.++++||=+|+|. |..+..+++.. +++ ++.+|.++ ..+.+++..--.++. .+..+ ....+|+++-...
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 3567888888765 66666677766 554 88888743 555554421111111 11101 1124888775322
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. ..+....+.+++ +|.+++....
T Consensus 197 ----~~---~~~~~~~~~l~~---~G~iv~~G~~ 220 (280)
T TIGR03366 197 ----AT---AAVRACLESLDV---GGTAVLAGSV 220 (280)
T ss_pred ----Ch---HHHHHHHHHhcC---CCEEEEeccC
Confidence 12 457888899999 8999987754
No 324
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=86.34 E-value=6 Score=24.65 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEee--cCCcccCHHHHHHHHHH
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFN--VGGKERTEQEWGSLFVN 158 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 158 (180)
.+|-|.+.++..++|+.+.+..+ |.++++- .|... .+.-.++.-.++-... ..-.....+++.+.+++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T~---~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~ 72 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRTP---LLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAA 72 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCCH---HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHh
Confidence 45567788888888999988875 5555532 11111 1112222221111100 01123578899999999
Q ss_pred cCCeEEEEeecC
Q 030291 159 AGFTHYKIAPIF 170 (180)
Q Consensus 159 aGf~~~~~~~~~ 170 (180)
+||++.+.....
T Consensus 73 ~g~~~~r~~ris 84 (97)
T PF07109_consen 73 AGWRIGRTERIS 84 (97)
T ss_pred CCCeeeeccccc
Confidence 999998776553
No 325
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.01 E-value=6 Score=30.02 Aligned_cols=84 Identities=10% Similarity=0.004 Sum_probs=46.7
Q ss_pred CCeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 16 LRSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 16 ~~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
..+|.=||+|. | .++..+.+.....+++++|.++ ..+.+++..-......+..+.....|+|+..- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 35688888876 3 3444454443224789999854 55544432211111222222345689888744 333334
Q ss_pred HHHHHHHHhhcc
Q 030291 93 KLLKKCREAIAS 104 (180)
Q Consensus 93 ~~l~~~~~~L~p 104 (180)
.+++++...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 667888888888
No 326
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=85.97 E-value=9.2 Score=26.38 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=68.5
Q ss_pred eCCcccHHHHHHHHHCC-CCeEE--EeeCch-hhccCCC---------CCCeeEE-ecCCcc---cC----CCccEEEec
Q 030291 22 VGGGTGAFARIISEAFP-GIKCT--VLDLPH-AVTDMPQ---------TDNLKYI-EGDMFQ---FI----PPSDAFFFK 80 (180)
Q Consensus 22 iG~G~G~~~~~l~~~~~-~~~~~--~~D~~~-~~~~a~~---------~~~~~~~-~~d~~~---~~----~~~D~v~~~ 80 (180)
||=|.=.++..|++... ...++ ..|..+ ...+... ..++++. ..|+.. .. ..||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 45555567788888865 44454 444422 3433331 2333332 344432 11 259999987
Q ss_pred ccccc-----------CChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCH
Q 030291 81 TVFHF-----------FDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTE 149 (180)
Q Consensus 81 ~~l~~-----------~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (180)
+---- ....-...+++.+.++|++ +|.+.++-..... ++.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~~ 133 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YDS 133 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Ccc
Confidence 65221 0012355788999999999 8998886432111 111
Q ss_pred HHHHHHHHHcCCeEEEEeec
Q 030291 150 QEWGSLFVNAGFTHYKIAPI 169 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~~~~ 169 (180)
=.+.++.+++||...+...+
T Consensus 134 W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred ccHHHHHHhcCCEEEEEecC
Confidence 22457778889988877665
No 327
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=85.94 E-value=7.7 Score=30.35 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCC----eEEEeeCch----hhccCCC---CCCeeEEecCCcc-------cC---
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGI----KCTVLDLPH----AVTDMPQ---TDNLKYIEGDMFQ-------FI--- 71 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~----~~~~~D~~~----~~~~a~~---~~~~~~~~~d~~~-------~~--- 71 (180)
.+++.+|||..+..|.-+..+++..... .+++=|... ++....+ ..++.+...|... ..
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 6789999999999999998888875322 466667622 2222211 2233333333211 01
Q ss_pred C--CccEEEec------cccccCCh---------------HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 72 P--PSDAFFFK------TVFHFFDD---------------EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 72 ~--~~D~v~~~------~~l~~~~~---------------~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
. .||-|++- +++.+-++ ..+..+|.+..++|++ ||.++-+.......+.+
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~---GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKV---GGRLVYSTCSLNPIENE 305 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcC---CCEEEEeccCCCchhhH
Confidence 1 37877751 12222211 2244789999999999 99999988766554443
No 328
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.82 E-value=11 Score=27.24 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=54.6
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc-----cCCCccEEEecccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ-----FIPPSDAFFFKTVF 83 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~-----~~~~~D~v~~~~~l 83 (180)
.++.+||-.|+|+ |..+..+++.. +.++++++.++ ..+.+++.....++.. +... ....+|+++....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~- 210 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG- 210 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC-
Confidence 5678999999886 66666666665 57888888753 4444332111111111 1100 1235899886432
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. ..+..+.+.+++ +|.++.....
T Consensus 211 ----~~---~~~~~~~~~l~~---~G~~v~~~~~ 234 (271)
T cd05188 211 ----GP---ETLAQALRLLRP---GGRIVVVGGT 234 (271)
T ss_pred ----CH---HHHHHHHHhccc---CCEEEEEccC
Confidence 21 346777888899 8988876543
No 329
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=83.14 E-value=8.1 Score=30.59 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=43.9
Q ss_pred CeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC--CCCeeEEecCCccc------CCCccEEEeccc
Q 030291 17 RSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--TDNLKYIEGDMFQF------IPPSDAFFFKTV 82 (180)
Q Consensus 17 ~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--~~~~~~~~~d~~~~------~~~~D~v~~~~~ 82 (180)
.+||=||||. |......+.+....+++..|-+. ...++.. ..+++..+.|+.+. +..+|+|+....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4689999966 55444443333347899999863 5555543 45899999999663 236899887543
No 330
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=83.10 E-value=11 Score=28.78 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=61.1
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch--hhccCCCCCCeeEEe-cCCcccCCCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH--AVTDMPQTDNLKYIE-GDMFQFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~--~~~~a~~~~~~~~~~-~d~~~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.+.+|+=+|+|. |......+.......++.++.+. ..+.+++.+. .... .+..+....+|+|+..-.-.+.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~---- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHY---- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCch----
Confidence 578899999876 54444444433235688888743 2333333221 2222 1222234569999986543322
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHH
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVN 158 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 158 (180)
...++...+.. + ++..++.|...|..-... .. ...+...++.++|.+..++
T Consensus 252 -~~~~~~~~~~~-~---~~~~~viDlavPrdi~~~-------v~-----~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 -AKIVERAMKKR-S---GKPRLIVDLAVPRDIEPE-------VG-----ELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred -HHHHHHHHhhC-C---CCCeEEEEeCCCCCCchh-------hc-----cCCCcEEEEHHHhHHHHHH
Confidence 12344433333 2 355666676654332110 00 1122345677888776654
No 331
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=83.06 E-value=3.8 Score=33.00 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=54.9
Q ss_pred CCeEEEeCCcccHHH--HHHHHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc---cC---CCccEEEe
Q 030291 16 LRSMVDVGGGTGAFA--RIISEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ---FI---PPSDAFFF 79 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~--~~l~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~---~~---~~~D~v~~ 79 (180)
++.+.|+|.|.|.-. ...+-....-.++.||.+. |...... .........-+.. +. ..||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 456777887766433 2222222244688999865 5554432 1111111111211 11 14999999
Q ss_pred ccccccCChHHHH-HHHHHHH-HhhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCL-KLLKKCR-EAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~-~~l~~~~-~~L~p~~~~G~~~~~~~~ 117 (180)
.+.++++.....+ ...+..+ +..++ |+.+++.+..
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecC
Confidence 9999999875533 3344443 55666 7788887653
No 332
>PRK13699 putative methylase; Provisional
Probab=82.65 E-value=1.4 Score=32.04 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=32.1
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
.+++.|||-=||+|..+.+..+. +.+++++|+++ ..+.+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHH
Confidence 57889999999999999887777 66799999955 555443
No 333
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=82.44 E-value=5.8 Score=31.27 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=63.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC-------CC-CeeEEecCCccc----CCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ-------TD-NLKYIEGDMFQF----IPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~-------~~-~~~~~~~d~~~~----~~~~D~v~~~ 80 (180)
.+-++||.=+|+|.-+.+++.+.+ ..+++.-|+++ ..+.+++ .. ++++.+.|...- ...||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 456899999999999999988843 45788999955 6666653 23 678888888442 235998765
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.-+..+. .+|....+.++. ||.+.++.+.
T Consensus 128 ---DPfGSp~--pfldsA~~~v~~---gGll~vTaTD 156 (377)
T PF02005_consen 128 ---DPFGSPA--PFLDSALQAVKD---GGLLCVTATD 156 (377)
T ss_dssp -----SS--H--HHHHHHHHHEEE---EEEEEEEE--
T ss_pred ---CCCCCcc--HhHHHHHHHhhc---CCEEEEeccc
Confidence 3344455 889999999999 8888887654
No 334
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.34 E-value=16 Score=28.43 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=55.0
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc----c-CCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----F-IPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~-~~~~D~v~~~~ 81 (180)
++++++||=.|+|. |..+..+++.. ++ .++++|.++ ..+.+++..-..++.. +..+ . ...+|+++-..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 55677888888765 66666677766 65 588888744 5555544221111111 1111 0 11488887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. .. ..+....+.+++ +|.+++....
T Consensus 268 G-----~~---~~~~~~~~~l~~---~G~iv~~G~~ 292 (371)
T cd08281 268 G-----SV---PALETAYEITRR---GGTTVTAGLP 292 (371)
T ss_pred C-----Ch---HHHHHHHHHHhc---CCEEEEEccC
Confidence 1 11 447778889999 8998887643
No 335
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=82.09 E-value=7.1 Score=28.89 Aligned_cols=97 Identities=16% Similarity=0.324 Sum_probs=49.4
Q ss_pred cCCCeEEEeCCcccHHHHHHH---HHC--CCCeEEEeeC----ch-hhcc-----------CC---------------C-
Q 030291 14 QGLRSMVDVGGGTGAFARIIS---EAF--PGIKCTVLDL----PH-AVTD-----------MP---------------Q- 56 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~---~~~--~~~~~~~~D~----~~-~~~~-----------a~---------------~- 56 (180)
.-+..|+|.||-.|..+..++ +.+ ++-+++++|. |+ ..+. .. +
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 446789999999997665543 322 3557888883 22 1100 00 0
Q ss_pred ---CCCeeEEecCCcccCCC---ccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 57 ---TDNLKYIEGDMFQFIPP---SDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 57 ---~~~~~~~~~d~~~~~~~---~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..++.++.+.+.+.+|. -.+.++.-=........ ..|+.+...|.| ||.+++-|
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~--~aLe~lyprl~~---GGiIi~DD 212 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTK--DALEFLYPRLSP---GGIIIFDD 212 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHH--HHHHHHGGGEEE---EEEEEESS
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHH--HHHHHHHhhcCC---CeEEEEeC
Confidence 25788888888554432 12222211111112333 779999999999 66666644
No 336
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.09 E-value=21 Score=27.55 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=55.5
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe---cCCcc----cC--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ----FI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~----~~--~~~D~v~~~ 80 (180)
..++++||=.|+|. |..+..+++.. ++ +++++|.++ ..+.+++..--.++. .+..+ .. ..+|+++-.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 46678898888765 66667777776 55 488888744 555554322111221 11111 11 248888753
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
. ..+ ..+....+.+++ +|.+++....
T Consensus 253 ~-----g~~---~~~~~~~~~~~~---~G~iv~~G~~ 278 (358)
T TIGR03451 253 V-----GRP---ETYKQAFYARDL---AGTVVLVGVP 278 (358)
T ss_pred C-----CCH---HHHHHHHHHhcc---CCEEEEECCC
Confidence 2 222 346777889999 8999887643
No 337
>PHA01634 hypothetical protein
Probab=81.98 E-value=2.9 Score=27.62 Aligned_cols=40 Identities=13% Similarity=-0.056 Sum_probs=30.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~ 55 (180)
.+.+|+|||++-|..+..++... -..+++++..+ ..+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHH
Confidence 46789999999999999888774 23688999854 444443
No 338
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.13 E-value=16 Score=27.90 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=53.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEec---C---Ccc--cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIEG---D---MFQ--FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~~---d---~~~--~~~~~D~v~~~~ 81 (180)
+.++.+||=+|+|. |..+..+++.. +++ +++++.++ ..+.+++..--.++.. + +.+ ....+|+++-..
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~ 239 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECS 239 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECC
Confidence 45678888888754 55666667665 666 88888743 4555443211111111 1 001 112589887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. .. ..+....+.|++ +|.+++...
T Consensus 240 g-----~~---~~~~~~~~~l~~---~G~~v~~g~ 263 (339)
T cd08239 240 G-----NT---AARRLALEAVRP---WGRLVLVGE 263 (339)
T ss_pred C-----CH---HHHHHHHHHhhc---CCEEEEEcC
Confidence 2 12 346677788999 899987664
No 339
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.98 E-value=11 Score=30.30 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=64.2
Q ss_pred cCCCeEEEeC-CcccH------HHHHHHHHCCCCeEEEeeC--chhhccCCC---CCCeeEEecCCc-ccC---------
Q 030291 14 QGLRSMVDVG-GGTGA------FARIISEAFPGIKCTVLDL--PHAVTDMPQ---TDNLKYIEGDMF-QFI--------- 71 (180)
Q Consensus 14 ~~~~~iLdiG-~G~G~------~~~~l~~~~~~~~~~~~D~--~~~~~~a~~---~~~~~~~~~d~~-~~~--------- 71 (180)
+++..|+=+| =|+|- ++..+.+.....-+++.|. |.++++.+. .-++.|+..+-. ++.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4567788888 35553 3334444434555688887 447777765 566766665321 121
Q ss_pred ---CCccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCC
Q 030291 72 ---PPSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDE 120 (180)
Q Consensus 72 ---~~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~ 120 (180)
..||+|++--. =+|+ |...-.=+.++++.++| .-.+++.|-....
T Consensus 178 ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik~~~~P---~E~llVvDam~GQ 226 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHI-DEELMDELKEIKEVINP---DETLLVVDAMIGQ 226 (451)
T ss_pred HHHcCCCEEEEeCCCcccc-cHHHHHHHHHHHhhcCC---CeEEEEEecccch
Confidence 25899998433 2233 44444558899999999 7888888865443
No 340
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=80.54 E-value=11 Score=34.29 Aligned_cols=104 Identities=16% Similarity=0.090 Sum_probs=57.4
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCC-CCCeeEEecCCccc----CCCccEEEeccccccC--
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQ-TDNLKYIEGDMFQF----IPPSDAFFFKTVFHFF-- 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~~~~~~~d~~~~----~~~~D~v~~~~~l~~~-- 86 (180)
..+..+||+|.|.-.-. |...-+...++.+|.-+..+.... ....+|++.|++.+ ...+|.+.|...|..-
T Consensus 821 ~~~~~~lDLGTGPE~Ri--LsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA 898 (1289)
T PF06016_consen 821 TDPDHWLDLGTGPECRI--LSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAA 898 (1289)
T ss_dssp CCC-CEEEET--TT-CH--HHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHHH
T ss_pred cCcceEEEccCCcccee--eeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhhh
Confidence 34688999988874322 222234778999998443332222 46788999999763 2369998887665432
Q ss_pred -ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 87 -DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 87 -~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
..-...+.++++.+.+++. |..-++...+.+-.
T Consensus 899 ~a~~tl~~~l~~~l~~~~~~--~~~~l~lQLNcPl~ 932 (1289)
T PF06016_consen 899 SANVTLDAGLQQFLSQCVQA--NVKRLWLQLNCPLD 932 (1289)
T ss_dssp HCT--HHHHHHHHHHHHHCT--T-SEEEEE-B--SS
T ss_pred cCCCcHHHHHHHHHHHHHhC--CccEEEEEecCCCC
Confidence 2334557788888888873 56666667665544
No 341
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=79.89 E-value=23 Score=26.94 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEecC---Ccc--c-CCCccEEEecccccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEGD---MFQ--F-IPPSDAFFFKTVFHF 85 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~d---~~~--~-~~~~D~v~~~~~l~~ 85 (180)
++.+||-.|+|. |..+..+++.. +. ++++++.++ ..+.+++..--.++..+ ... . ...+|+++.....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 577888888765 66777777765 55 678887643 44433321111111111 101 1 1248888864331
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. ..++.+.+.|++ +|.++....
T Consensus 242 ----~--~~~~~~~~~L~~---~G~~v~~g~ 263 (339)
T cd08232 242 ----P--AALASALRVVRP---GGTVVQVGM 263 (339)
T ss_pred ----H--HHHHHHHHHHhc---CCEEEEEec
Confidence 1 347788899999 888887653
No 342
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=79.74 E-value=0.77 Score=33.47 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=43.8
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcc--------cCCCccE
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQ--------FIPPSDA 76 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~--------~~~~~D~ 76 (180)
++..++||||.|..-.--.+-.+-.+-+++|.|+++ .++.|+. ...++.....-.+ ....||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456789999988755443333222266789999855 6666653 2234443322111 1225999
Q ss_pred EEeccccccC
Q 030291 77 FFFKTVFHFF 86 (180)
Q Consensus 77 v~~~~~l~~~ 86 (180)
..|+=-+|..
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999888743
No 343
>PRK06545 prephenate dehydrogenase; Validated
Probab=75.81 E-value=15 Score=28.65 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=41.1
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
+|.=||+|. |.++..+.+......++..|... ....+....-+.-...+..+.....|+|+.. ++......+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVila-----vP~~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLA-----VPVDATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEe-----CCHHHHHHH
Confidence 455566665 44555565554444455555433 2222221111111111221223468988873 344455677
Q ss_pred HHHHHH-hhcc
Q 030291 95 LKKCRE-AIAS 104 (180)
Q Consensus 95 l~~~~~-~L~p 104 (180)
++++.. .++|
T Consensus 77 l~~l~~~~l~~ 87 (359)
T PRK06545 77 LAELADLELKP 87 (359)
T ss_pred HHHHhhcCCCC
Confidence 888887 3777
No 344
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=75.60 E-value=28 Score=25.57 Aligned_cols=92 Identities=14% Similarity=0.029 Sum_probs=52.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCC-CeeEEecC-CcccCCCccEEEeccccccCC
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTD-NLKYIEGD-MFQFIPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~-~~~~~~~d-~~~~~~~~D~v~~~~~l~~~~ 87 (180)
..++.++|=.|+|. |..+..+++.. +.+ +++++.++ ....+++.. --...... .......+|+++....-
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~---- 169 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGS---- 169 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCC----
Confidence 55678888888765 66666666765 556 88888643 444433321 00011100 00112358888753221
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. ..+....+.+++ +|.++....
T Consensus 170 --~--~~~~~~~~~l~~---~g~~~~~g~ 191 (277)
T cd08255 170 --P--SALETALRLLRD---RGRVVLVGW 191 (277)
T ss_pred --h--HHHHHHHHHhcC---CcEEEEEec
Confidence 1 347778889999 888887653
No 345
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.09 E-value=22 Score=27.29 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=37.7
Q ss_pred EEEeCCcccHHHHHHHHHCCCCe-EEEeeCch-hhccCCC-CCCeeEEecCCcc----cCCCccEEEec
Q 030291 19 MVDVGGGTGAFARIISEAFPGIK-CTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQ----FIPPSDAFFFK 80 (180)
Q Consensus 19 iLdiG~G~G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~----~~~~~D~v~~~ 80 (180)
|+|+-||.|.++..+.+.. .+ +.++|..+ ..+-.+. .+. ....+|+.+ ..+..|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 5899999999999988773 44 46788844 3333332 222 445567644 24568888764
No 346
>PLN02740 Alcohol dehydrogenase-like
Probab=74.64 E-value=39 Score=26.44 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=55.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEecC-----Ccc---c-C-CCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEGD-----MFQ---F-I-PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~d-----~~~---~-~-~~~D~v~~ 79 (180)
++++++||=+|+|. |..+..+++.. ++ +++++|.++ .++.+++..--.++..+ ..+ . . +.+|+++-
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid 274 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARAR-GASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFE 274 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEE
Confidence 56788899898765 66667777776 55 688888744 56665542211122111 111 0 1 14888876
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~~ 117 (180)
... .. ..+....+.+++ + |.+++....
T Consensus 275 ~~G-----~~---~~~~~a~~~~~~---g~G~~v~~G~~ 302 (381)
T PLN02740 275 CAG-----NV---EVLREAFLSTHD---GWGLTVLLGIH 302 (381)
T ss_pred CCC-----Ch---HHHHHHHHhhhc---CCCEEEEEccC
Confidence 332 22 447777788888 7 888776643
No 347
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.12 E-value=18 Score=27.07 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=49.8
Q ss_pred eEEEeCCcc--cHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+|.=||||. +.++..|.+.. +...+++.|.+. .++.+.+...+.. ..+..+.....|+|+. .+++....
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~~~~~e~~~~aDiIiL-----avkP~~~~ 77 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-TTNNNEVANSADILIL-----SIKPDLYS 77 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-eCCcHHHHhhCCEEEE-----EeChHHHH
Confidence 566788876 33444555442 234688888744 4444332112322 2333222346798877 34456666
Q ss_pred HHHHHHHHhhccCCCCcEEEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+++++...+++ +.++++-
T Consensus 78 ~vl~~l~~~~~~----~~lvISi 96 (272)
T PRK12491 78 SVINQIKDQIKN----DVIVVTI 96 (272)
T ss_pred HHHHHHHHhhcC----CcEEEEe
Confidence 888888888876 6666643
No 348
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.91 E-value=35 Score=28.93 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccC
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~ 86 (180)
..+|+=+|+|. |......++.. +..++.+|.++ .++.+++ .+...+.+|..++ ..+.|++++. .
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~-----~ 472 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINA-----I 472 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE-----e
Confidence 35677788776 55444433332 56799999954 6766654 3577888998652 2368887763 3
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+|++....+....+.+.| +-.++..
T Consensus 473 ~d~~~n~~i~~~ar~~~p---~~~iiaR 497 (621)
T PRK03562 473 DDPQTSLQLVELVKEHFP---HLQIIAR 497 (621)
T ss_pred CCHHHHHHHHHHHHHhCC---CCeEEEE
Confidence 444444445555666677 5666553
No 349
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=73.86 E-value=16 Score=28.31 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=49.2
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
-.+++|.=||.|. |......+..+ +.++++.+.+. ..+.+.. ..++. .+..+-....|+|+.. +|++..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~-G~~ViV~~r~~~s~~~A~~-~G~~v--~sl~Eaak~ADVV~ll-----LPd~~t 84 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDS-GVEVVVGVRPGKSFEVAKA-DGFEV--MSVSEAVRTAQVVQML-----LPDEQQ 84 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHC-cCEEEEEECcchhhHHHHH-cCCEE--CCHHHHHhcCCEEEEe-----CCChHH
Confidence 3467788888876 54333333333 77887776432 2222221 12222 2443345579998884 344333
Q ss_pred HHHH-HHHHHhhccCCCCcEEEE
Q 030291 92 LKLL-KKCREAIASNGERGKVLI 113 (180)
Q Consensus 92 ~~~l-~~~~~~L~p~~~~G~~~~ 113 (180)
..++ ..+...|+| |..+++
T Consensus 85 ~~V~~~eil~~MK~---GaiL~f 104 (335)
T PRK13403 85 AHVYKAEVEENLRE---GQMLLF 104 (335)
T ss_pred HHHHHHHHHhcCCC---CCEEEE
Confidence 4555 578899999 555544
No 350
>PRK08507 prephenate dehydrogenase; Validated
Probab=73.34 E-value=15 Score=27.37 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=46.2
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKL 94 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~ 94 (180)
+|.=||+|. +.++..+.+......++++|.++ ..+.+.+..-+.. ..+. ......|+|+. .+++....++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~-~~~~~aD~Vil-----avp~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSF-EELKKCDVIFL-----AIPVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCH-HHHhcCCEEEE-----eCcHHHHHHH
Confidence 355577765 34555565553334788889844 4444433221111 1122 11224888887 3455555677
Q ss_pred HHHHHHhhccCCCCcEEEE
Q 030291 95 LKKCREAIASNGERGKVLI 113 (180)
Q Consensus 95 l~~~~~~L~p~~~~G~~~~ 113 (180)
+.++.. +++ |.+++
T Consensus 75 ~~~l~~-l~~----~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKE----NTTII 88 (275)
T ss_pred HHHHhc-cCC----CCEEE
Confidence 888888 877 55554
No 351
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=73.23 E-value=9.2 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.037 Sum_probs=23.8
Q ss_pred cccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 145 KERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
.-++.+++..+++++||++.+.+....
T Consensus 94 ~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 94 YKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 457999999999999999999988755
No 352
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=73.14 E-value=3 Score=25.43 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=35.5
Q ss_pred CeEEEe-eCc-hhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 40 IKCTVL-DLP-HAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 40 ~~~~~~-D~~-~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+++.+ +.+ +......+.-.+.+...+..+-....|+|+. .+++.....+++++ ..+.+ +.++++
T Consensus 26 ~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvil-----av~p~~~~~v~~~i-~~~~~----~~~vis 92 (96)
T PF03807_consen 26 HEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVIL-----AVKPQQLPEVLSEI-PHLLK----GKLVIS 92 (96)
T ss_dssp GEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHHHH-HHHHT----TSEEEE
T ss_pred eeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEE-----EECHHHHHHHHHHH-hhccC----CCEEEE
Confidence 566634 763 3444443322333333333333446899888 44556666788888 66666 666664
No 353
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=73.06 E-value=16 Score=27.68 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe-cCCcccCCCccEEEeccccccCChHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE-GDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~-~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
.+.+++=||.|. |......+... +++++.+|.+. ....++.. ..++.. .+..+....+|+|+..- +..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~-G~~~~~~~~l~~~l~~aDiVI~t~-----p~~-- 221 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM-GLSPFHLSELAEEVGKIDIIFNTI-----PAL-- 221 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-CCeeecHHHHHHHhCCCCEEEECC-----Chh--
Confidence 468999999876 44444444444 67899999843 44443322 222221 12222345799999842 221
Q ss_pred HHHHHHHHHhhccCCCCcEEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
-+-++..+.+++ ++.++-.
T Consensus 222 -~i~~~~l~~~~~---g~vIIDl 240 (296)
T PRK08306 222 -VLTKEVLSKMPP---EALIIDL 240 (296)
T ss_pred -hhhHHHHHcCCC---CcEEEEE
Confidence 223556677888 5544433
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=72.92 E-value=39 Score=25.69 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=49.5
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCc-hhhccCCCCCCeeEE--------ecCC--cccCCCccEEEecccc
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLP-HAVTDMPQTDNLKYI--------EGDM--FQFIPPSDAFFFKTVF 83 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~~~~~~~~--------~~d~--~~~~~~~D~v~~~~~l 83 (180)
.+|+=+|+|. | .++..|.+. +..++.++-+ +-++..++...+... .... .+..+.+|+|+..-=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH
Confidence 3688899887 4 466666665 4568888764 333333221112111 1101 0123469988874322
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+ +....++.+...+.+ +..++...
T Consensus 81 ~-----~~~~al~~l~~~l~~---~t~vv~lQ 104 (305)
T PRK05708 81 Y-----DAEPAVASLAHRLAP---GAELLLLQ 104 (305)
T ss_pred H-----hHHHHHHHHHhhCCC---CCEEEEEe
Confidence 2 223678999999998 67666654
No 355
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.79 E-value=21 Score=30.05 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=51.9
Q ss_pred CeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccC
Q 030291 17 RSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~ 86 (180)
..|+=+|+|. ++..+.+.. .+..++.+|..+ .++.+++ .....+.+|..++ ..+.|.+++. .
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~-----~ 472 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVIT-----C 472 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEE-----e
Confidence 4555555554 444433321 256799999844 6776654 4577888998652 2368877762 3
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+|++....+....+.+.| .-.++...
T Consensus 473 ~d~~~n~~i~~~~r~~~p---~~~IiaRa 498 (601)
T PRK03659 473 NEPEDTMKIVELCQQHFP---HLHILARA 498 (601)
T ss_pred CCHHHHHHHHHHHHHHCC---CCeEEEEe
Confidence 344433345455566777 67777643
No 356
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=72.76 E-value=14 Score=21.95 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=20.5
Q ss_pred ccCCCeEEEeCCcccH-HHHHHHHH-CCCCeEEEeeC
Q 030291 13 FQGLRSMVDVGGGTGA-FARIISEA-FPGIKCTVLDL 47 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~-~~~~l~~~-~~~~~~~~~D~ 47 (180)
++.+++||=|||.+|. ++.++... ..++..+++-.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 4677899999999997 45455544 44666666654
No 357
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.43 E-value=39 Score=25.51 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=52.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEecCCcc-------cCCCccEEEeccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIEGDMFQ-------FIPPSDAFFFKTV 82 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~~d~~~-------~~~~~D~v~~~~~ 82 (180)
+.++++||-+|+|. |..+..+++.. +++ ++.++.++ ..+.+++..--.++..+-.+ ....+|+++....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 45678899888653 55666666665 555 67776633 44443321111122211111 1235899886321
Q ss_pred cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 83 FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. . ..+....+.|++ +|.++....
T Consensus 236 -----~-~--~~~~~~~~~l~~---~G~~v~~g~ 258 (334)
T cd08234 236 -----V-P--KTLEQAIEYARR---GGTVLVFGV 258 (334)
T ss_pred -----C-h--HHHHHHHHHHhc---CCEEEEEec
Confidence 1 1 457788899999 898887654
No 358
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=72.06 E-value=16 Score=26.05 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=41.1
Q ss_pred CCCeEEEeCCcccHH--HHHHHHHCCCCeEEEeeC--chhhccCCCCCCeeEEecCCcc-cCCCccEEEec
Q 030291 15 GLRSMVDVGGGTGAF--ARIISEAFPGIKCTVLDL--PHAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~--~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~ 80 (180)
.+.+||=||+|.-.. ...|++. ++.++.++. .+.+....+..++++...++.. ....+|+|++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 356899999987433 3334444 778888886 2233333334589998888743 34578888773
No 359
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=71.00 E-value=8.1 Score=29.18 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=32.6
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCe----EEEeeCchhhccCCCCCCeeEEecCC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIK----CTVLDLPHAVTDMPQTDNLKYIEGDM 67 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~----~~~~D~~~~~~~a~~~~~~~~~~~d~ 67 (180)
++..|+=+|++.|.....|.+.++... +..+|+.+.-...++..++++.+.=+
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~ff 114 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQRFF 114 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES--
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehhhC
Confidence 346899999999999999998887644 89999855222333344466655433
No 360
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=70.77 E-value=8.7 Score=29.29 Aligned_cols=56 Identities=9% Similarity=0.151 Sum_probs=47.4
Q ss_pred CCCeeEEecCCcc-----cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 57 TDNLKYIEGDMFQ-----FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 57 ~~~~~~~~~d~~~-----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
..++.++.+|+.+ +.++.|.++...+-.++++.+...++.++.+-+.+ |..+++-.
T Consensus 306 ~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifRt 366 (414)
T COG5379 306 LRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFRT 366 (414)
T ss_pred hhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEec
Confidence 5678899999865 34579999999999999999999999999999999 77777644
No 361
>PRK11524 putative methyltransferase; Provisional
Probab=69.94 E-value=17 Score=27.36 Aligned_cols=20 Identities=15% Similarity=0.607 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccCCCCcEEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..++..+.++||| ||.+++.
T Consensus 60 ~~~l~~~~rvLK~---~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKK---QGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCC---CcEEEEE
Confidence 3688999999999 8998875
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=69.90 E-value=11 Score=25.59 Aligned_cols=85 Identities=14% Similarity=0.241 Sum_probs=44.8
Q ss_pred EEEeCCcccHHHHHH-HHHCCCCeEEEeeCch-hhccCCC-------------CCCeeEEecCCcccCCCccEEEecccc
Q 030291 19 MVDVGGGTGAFARII-SEAFPGIKCTVLDLPH-AVTDMPQ-------------TDNLKYIEGDMFQFIPPSDAFFFKTVF 83 (180)
Q Consensus 19 iLdiG~G~G~~~~~l-~~~~~~~~~~~~D~~~-~~~~a~~-------------~~~~~~~~~d~~~~~~~~D~v~~~~~l 83 (180)
|.=||+|....+.+. +... +.+++....++ .++..++ ..++.+ ..|..+.....|+|+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iii---- 75 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIII---- 75 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEe----
Confidence 556788875544432 2332 55677666632 3332221 123322 3344233456888887
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+|....+.+++++...+++ +..++.
T Consensus 76 -avPs~~~~~~~~~l~~~l~~----~~~ii~ 101 (157)
T PF01210_consen 76 -AVPSQAHREVLEQLAPYLKK----GQIIIS 101 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSHT----T-EEEE
T ss_pred -cccHHHHHHHHHHHhhccCC----CCEEEE
Confidence 33444455889999999987 655554
No 363
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=69.86 E-value=6.6 Score=32.95 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=37.1
Q ss_pred cccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCchhhccCCCCCCeeEEecCCc
Q 030291 12 IFQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPHAVTDMPQTDNLKYIEGDMF 68 (180)
Q Consensus 12 ~~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~ 68 (180)
.+.+...|||++|.+|.+..-..+..| +.-++|+|+-++. -.+++...+.|+.
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik----p~~~c~t~v~dIt 94 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK----PIPNCDTLVEDIT 94 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc----cCCccchhhhhhh
Confidence 467889999999999999988888765 4567899974311 1234444555553
No 364
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=69.75 E-value=27 Score=28.15 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=50.0
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+++|+=+|+|. |......++.. +++++.+|... ....+... .+++ .++.+.....|+|+..- ...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~-G~~v--~~l~eal~~aDVVI~aT-----G~~--- 278 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD-GFRV--MTMEEAAELGDIFVTAT-----GNK--- 278 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc-CCEe--cCHHHHHhCCCEEEECC-----CCH---
Confidence 578899999987 55444445555 77899999743 32222221 2222 22322344789988742 222
Q ss_pred HHHH-HHHHhhccCCCCcEEEEEE
Q 030291 93 KLLK-KCREAIASNGERGKVLIID 115 (180)
Q Consensus 93 ~~l~-~~~~~L~p~~~~G~~~~~~ 115 (180)
.++. .....+|+ |+.++...
T Consensus 279 ~vI~~~~~~~mK~---GailiNvG 299 (425)
T PRK05476 279 DVITAEHMEAMKD---GAILANIG 299 (425)
T ss_pred HHHHHHHHhcCCC---CCEEEEcC
Confidence 3454 67788998 55555544
No 365
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=68.59 E-value=19 Score=27.26 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=55.7
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcccCC-----CccEEEeccc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQFIP-----PSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~~~~-----~~D~v~~~~~ 82 (180)
.++.|+-+| -.-..+.+++-..---++..+|+.+ .+....+ ..+++...-|..+++| .||+.+. .-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT-DP 229 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT-DP 229 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec-Cc
Confidence 456788888 4445555555443344789999966 4433332 5678888999987777 5999665 22
Q ss_pred cccCChHHHHHHHHHHHHhhcc
Q 030291 83 FHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 83 l~~~~~~~~~~~l~~~~~~L~p 104 (180)
-+.++.. ..++.+-.+.||.
T Consensus 230 peTi~al--k~FlgRGI~tLkg 249 (354)
T COG1568 230 PETIKAL--KLFLGRGIATLKG 249 (354)
T ss_pred hhhHHHH--HHHHhccHHHhcC
Confidence 2223333 3678888888887
No 366
>PLN02827 Alcohol dehydrogenase-like
Probab=68.50 E-value=55 Score=25.62 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-----CCcc----cC-CCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-----DMFQ----FI-PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-----d~~~----~~-~~~D~v~~ 79 (180)
+.++++||=.|+|. |.++..+++.. +. .++++|.++ ..+.+++..--.++.. +... .. ..+|+|+-
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 56688899888765 66666677766 55 578888643 5555543221111111 1100 01 14888775
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEe
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDI 116 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~ 116 (180)
... .. ..+....+++++ + |.+++...
T Consensus 270 ~~G-----~~---~~~~~~l~~l~~---g~G~iv~~G~ 296 (378)
T PLN02827 270 CVG-----DT---GIATTALQSCSD---GWGLTVTLGV 296 (378)
T ss_pred CCC-----Ch---HHHHHHHHhhcc---CCCEEEEECC
Confidence 322 22 347778888999 8 88887654
No 367
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=67.93 E-value=43 Score=25.71 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=55.6
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch--hhccCCC-------CCCeeEEecCCcccCCCccEEEeccc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH--AVTDMPQ-------TDNLKYIEGDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~--~~~~a~~-------~~~~~~~~~d~~~~~~~~D~v~~~~~ 82 (180)
+.+.+|.=||+|. |.....++...+-+ ++..+|..+ ....+.. ..++.....++ +.....|+|+....
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag 82 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAG 82 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecC
Confidence 3456899999977 65544444443333 688999733 1111111 13445554444 45678999888554
Q ss_pred cccCChH-------HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDDE-------DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~~-------~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.-.-+.. .-..+++++...++.+++++.+++..
T Consensus 83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 83 APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 4222211 12245666565555433478887765
No 368
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=67.86 E-value=38 Score=27.13 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=50.8
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..+++|+=+|+|. |......++.+ +++++++|... ....+... ...+ .+..+.....|+++..- ...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~~-G~~v--~~leeal~~aDVVItaT-----G~~-- 261 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAMD-GFRV--MTMEEAAKIGDIFITAT-----GNK-- 261 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHhc-CCEe--CCHHHHHhcCCEEEECC-----CCH--
Confidence 4578999999998 66555555655 77899998733 22222221 2222 12222344689887632 122
Q ss_pred HHHHH-HHHHhhccCCCCcEEEEEE
Q 030291 92 LKLLK-KCREAIASNGERGKVLIID 115 (180)
Q Consensus 92 ~~~l~-~~~~~L~p~~~~G~~~~~~ 115 (180)
.++. +....+|+ |+.++.+.
T Consensus 262 -~vI~~~~~~~mK~---GailiN~G 282 (406)
T TIGR00936 262 -DVIRGEHFENMKD---GAIVANIG 282 (406)
T ss_pred -HHHHHHHHhcCCC---CcEEEEEC
Confidence 4454 47788998 66665543
No 369
>PRK08818 prephenate dehydrogenase; Provisional
Probab=67.22 E-value=46 Score=26.30 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=46.0
Q ss_pred CCeEEEeCC-cc--cHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 16 LRSMVDVGG-GT--GAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 16 ~~~iLdiG~-G~--G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
..+|.=||. |. |.++..+.+.. +.+++++|..+. ...+..+.....|+|+.. .|-....
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~------------~~~~~~~~v~~aDlVila-----vPv~~~~ 65 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP------------GSLDPATLLQRADVLIFS-----APIRHTA 65 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc------------ccCCHHHHhcCCCEEEEe-----CCHHHHH
Confidence 456777887 65 55667776654 778999996310 001111234568998884 3444455
Q ss_pred HHHHHHHHh---hccCCCCcEEEE
Q 030291 93 KLLKKCREA---IASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~---L~p~~~~G~~~~ 113 (180)
++++++... |+| |.++.
T Consensus 66 ~~l~~l~~~~~~l~~----~~iVt 85 (370)
T PRK08818 66 ALIEEYVALAGGRAA----GQLWL 85 (370)
T ss_pred HHHHHHhhhhcCCCC----CeEEE
Confidence 778888775 677 55444
No 370
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=67.22 E-value=66 Score=26.00 Aligned_cols=109 Identities=13% Similarity=0.038 Sum_probs=66.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCC-CCeEEEeeCch-hhccCCC------CCCeeEEecCCcc----cC-CCccEEEe
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFP-GIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ----FI-PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~----~~-~~~D~v~~ 79 (180)
.+++.||||..+..|.-+..++.... .-.+++.|... .+..... -.+.-..+.|..+ .. ++||-|+.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeee
Confidence 46788999999999987776665532 33678888643 3333222 2344444555532 12 26888874
Q ss_pred ----cc--cccc------CC--------hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 80 ----KT--VFHF------FD--------DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 80 ----~~--~l~~------~~--------~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
++ ++.- .. ...++++|....+.+++ ||.++-+.+.......+
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~---GGvLVYSTCSI~~~ENE 380 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA---GGVLVYSTCSITVEENE 380 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC---CcEEEEEeeecchhhhH
Confidence 33 2211 10 12345788999999999 88888887765544433
No 371
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=67.07 E-value=1.6 Score=34.68 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=42.5
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-chhhccCCC--------CCCeeEEecCCc
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-PHAVTDMPQ--------TDNLKYIEGDMF 68 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--------~~~~~~~~~d~~ 68 (180)
++++..|.|+-||.|.++..+++. ++++++.|+ ++++++.+. ..+++.+..|..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~ 309 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAK 309 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHH
Confidence 678899999999999999998888 699999999 557766653 334666666653
No 372
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.85 E-value=52 Score=24.71 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=50.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCc-hhhccCCCCCCeeEEecCCc--ccCCCccEEEeccccccCCh
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLP-HAVTDMPQTDNLKYIEGDMF--QFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~-~~~~~a~~~~~~~~~~~d~~--~~~~~~D~v~~~~~l~~~~~ 88 (180)
..++.+||=.|+|. |..+..+++.. +.+++.++.+ +..+.+++.. .... .+.. .....+|+++-.. ..
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~g-~~~~-~~~~~~~~~~~~d~vid~~-----g~ 224 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRLG-VETV-LPDEAESEGGGFDVVVEAT-----GS 224 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHcC-CcEE-eCccccccCCCCCEEEECC-----CC
Confidence 45677888777543 44455555555 6678877764 3555554311 1111 1111 1223589887632 11
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
. ..+....+.|++ +|.++...
T Consensus 225 ~---~~~~~~~~~l~~---~g~~v~~~ 245 (319)
T cd08242 225 P---SGLELALRLVRP---RGTVVLKS 245 (319)
T ss_pred h---HHHHHHHHHhhc---CCEEEEEc
Confidence 1 347778888999 89888744
No 373
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.80 E-value=56 Score=25.03 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=52.8
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEecCC--cc------cCCCcc-EEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIEGDM--FQ------FIPPSD-AFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~~d~--~~------~~~~~D-~v~~~ 80 (180)
..++++||=.|+|. |..+..+++.. +++ +++++.++ ..+.+++..--.++..+- .+ ....+| +++-
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d- 235 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILE- 235 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEE-
Confidence 45677888888765 56666667766 554 67887643 444444321111111110 01 112466 5443
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
..... ..+....++|++ +|.+++....
T Consensus 236 ----~~G~~---~~~~~~~~~l~~---~G~iv~~G~~ 262 (347)
T PRK10309 236 ----TAGVP---QTVELAIEIAGP---RAQLALVGTL 262 (347)
T ss_pred ----CCCCH---HHHHHHHHHhhc---CCEEEEEccC
Confidence 22222 458888899999 9999987654
No 374
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=66.57 E-value=35 Score=27.37 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCc-h-hhccCCCCCCeeEEecCC-cccCCCccEEEecc-ccccCChH
Q 030291 15 GLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLP-H-AVTDMPQTDNLKYIEGDM-FQFIPPSDAFFFKT-VFHFFDDE 89 (180)
Q Consensus 15 ~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~-~-~~~~a~~~~~~~~~~~d~-~~~~~~~D~v~~~~-~l~~~~~~ 89 (180)
...++|=||.| .|.....-+....-..++..--. + ..+-|++.. ..+...+- .+.++.+|+||++- .-|++-.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTsa~~~ii~- 254 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISSTSAPHPIIT- 254 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecCCCccccC-
Confidence 57789999999 57665544433322345555432 1 222233222 22222222 12456899999854 3443322
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
-..+.+.+++ .-.++++|...|..
T Consensus 255 -----~~~ve~a~~~---r~~~livDiavPRd 278 (414)
T COG0373 255 -----REMVERALKI---RKRLLIVDIAVPRD 278 (414)
T ss_pred -----HHHHHHHHhc---ccCeEEEEecCCCC
Confidence 3345566666 23388888876654
No 375
>PTZ00357 methyltransferase; Provisional
Probab=66.32 E-value=13 Score=32.01 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=54.8
Q ss_pred CeEEEeCCcccHHHHHHHHHC----CCCeEEEeeCc-hhh--ccCC--C-----------CCCeeEEecCCccc-CC---
Q 030291 17 RSMVDVGGGTGAFARIISEAF----PGIKCTVLDLP-HAV--TDMP--Q-----------TDNLKYIEGDMFQF-IP--- 72 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~----~~~~~~~~D~~-~~~--~~a~--~-----------~~~~~~~~~d~~~~-~~--- 72 (180)
..|+=+|+|-|-+....++.. -..+++++|-. ... ...+ + ..+++++..|+..- .+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 468999999998877665542 25678999973 411 1111 1 24589999999652 11
Q ss_pred ----------CccEEEeccccccCCh-HHHHHHHHHHHHhhcc
Q 030291 73 ----------PSDAFFFKTVFHFFDD-EDCLKLLKKCREAIAS 104 (180)
Q Consensus 73 ----------~~D~v~~~~~l~~~~~-~~~~~~l~~~~~~L~p 104 (180)
.+|++|+ -.|.-|.| +..++.|.-+.+.||+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhh
Confidence 4898876 23333443 3355778888877763
No 376
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.20 E-value=11 Score=28.51 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=43.5
Q ss_pred CCeeEEecCCcccCC-------CccEEEeccc-cccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhh
Q 030291 58 DNLKYIEGDMFQFIP-------PSDAFFFKTV-FHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTE 129 (180)
Q Consensus 58 ~~~~~~~~d~~~~~~-------~~D~v~~~~~-l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~ 129 (180)
-+|.|+..+....++ .||+|+.+.. .|.+.+. +.++++| +.++++++..-
T Consensus 200 vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~----~A~LvvEtaKf---------- 257 (289)
T PF14740_consen 200 VKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP----DAVLVVETAKF---------- 257 (289)
T ss_pred cEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC----CCEEEEEcchh----------
Confidence 455666666544332 4999988654 4444333 6678899 55666554211
Q ss_pred hhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 130 SKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
..++... ...--.+.+.++++++||+.+.
T Consensus 258 ---mvdLrKE----q~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 258 ---MVDLRKE----QLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred ---heeCCHH----HHHHHHHHHHHHHHHCCCcccc
Confidence 1111000 0001235678899999998654
No 377
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=65.96 E-value=61 Score=25.17 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=51.6
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-h-hccCCCCCCeeEEe-cC---CcccCCCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-A-VTDMPQTDNLKYIE-GD---MFQFIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~-~~~a~~~~~~~~~~-~d---~~~~~~~~D~v~~~~~l~~~ 86 (180)
.++++||=.|+|. |..+..+++.. +.+++.++.+. . ...+++..-..++. .+ +....+.+|+++-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g---- 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS---- 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC----
Confidence 4567788788765 66777777776 66777777633 2 22222211111111 11 1011124788775322
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. ..+.+..+.+++ +|.++....
T Consensus 257 -~~---~~~~~~~~~l~~---~G~iv~vG~ 279 (360)
T PLN02586 257 -AV---HALGPLLGLLKV---NGKLITLGL 279 (360)
T ss_pred -CH---HHHHHHHHHhcC---CcEEEEeCC
Confidence 22 347778899999 899888754
No 378
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=65.91 E-value=52 Score=26.43 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=36.1
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-h-hccCCCCCCeeEEe-cCCcccCCCccEEEecc
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-A-VTDMPQTDNLKYIE-GDMFQFIPPSDAFFFKT 81 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~-~~~a~~~~~~~~~~-~d~~~~~~~~D~v~~~~ 81 (180)
..+.+|+=+|+|. |......+.......++.++.+. . ...++..+ ..... .+..+....+|+|+..-
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g-~~~~~~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG-GEAIPLDELPEALAEADIVISST 250 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-CcEeeHHHHHHHhccCCEEEECC
Confidence 3568899999877 55554444444223688888743 2 22232211 11221 22222345799999854
No 379
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=65.72 E-value=32 Score=26.51 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=58.7
Q ss_pred ccCCCeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeC-chhhccCCCC---CCeeEEecCCccc----CC--CccEEEec
Q 030291 13 FQGLRSMVDVGGGT--GAFARIISEAFPGIKCTVLDL-PHAVTDMPQT---DNLKYIEGDMFQF----IP--PSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~~~~~~~d~~~~----~~--~~D~v~~~ 80 (180)
++++.+||=.|+.. |.++..|++.. +..++++-. ++..+.+++. .-+.+...|+.+. .+ .+|+|+-.
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 66788999888444 67888888887 324444444 4444455542 2334444444331 12 49998874
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
-. . ..+.+..+.|++ +|.++......
T Consensus 219 vG-----~----~~~~~~l~~l~~---~G~lv~ig~~~ 244 (326)
T COG0604 219 VG-----G----DTFAASLAALAP---GGRLVSIGALS 244 (326)
T ss_pred CC-----H----HHHHHHHHHhcc---CCEEEEEecCC
Confidence 33 1 457888999999 89999877654
No 380
>PRK13699 putative methylase; Provisional
Probab=65.48 E-value=40 Score=24.51 Aligned_cols=19 Identities=0% Similarity=-0.048 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhccCCCCcEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
..++.++.++||| ||.+++
T Consensus 52 ~~~l~E~~RVLKp---gg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKK---DALMVS 70 (227)
T ss_pred HHHHHHHHHHcCC---CCEEEE
Confidence 4789999999999 777765
No 381
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=65.27 E-value=6.5 Score=28.66 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=34.4
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC-----ch--hhccCCCCCCeeEEecCCcc
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL-----PH--AVTDMPQTDNLKYIEGDMFQ 69 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~-----~~--~~~~a~~~~~~~~~~~d~~~ 69 (180)
...-|.+||.|.|..++.++... -.+...++. +. ++..|. ..+.....+|++.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa-~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAA-PGKLRIHHGDVLR 109 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcC-CcceEEeccccce
Confidence 34678999999999999998774 234555553 11 333332 4566777777753
No 382
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=65.15 E-value=74 Score=26.55 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=48.9
Q ss_pred CeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccC
Q 030291 17 RSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFF 86 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~ 86 (180)
..++=+|||. .+..+++.. .+..++.+|..+ ..+.+++ .....+.+|..++ ..++|.+++.-
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~----- 489 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTI----- 489 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEc-----
Confidence 4555566655 444444332 256799999854 6666664 5688899999663 23688666522
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+++.....+....+...| +-.++..
T Consensus 490 ~~~~~~~~iv~~~~~~~~---~~~iiar 514 (558)
T PRK10669 490 PNGYEAGEIVASAREKRP---DIEIIAR 514 (558)
T ss_pred CChHHHHHHHHHHHHHCC---CCeEEEE
Confidence 222211223334455566 5555553
No 383
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=65.15 E-value=54 Score=26.72 Aligned_cols=122 Identities=17% Similarity=0.191 Sum_probs=63.7
Q ss_pred EEeCCcccHHHHH--HHHHCCCCeEEEeeCch--hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHHHH
Q 030291 20 VDVGGGTGAFARI--ISEAFPGIKCTVLDLPH--AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLKLL 95 (180)
Q Consensus 20 LdiG~G~G~~~~~--l~~~~~~~~~~~~D~~~--~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~~l 95 (180)
+=| ||+|.-+.+ |.+. +.++.|.|... +.++.++. .+.+..+--.+.....|.|+.+..+- =.+++ +
T Consensus 13 IGI-gG~GMsglA~iL~~~--G~~VsGSD~~~~~~t~~L~~~-G~~i~~gh~~~ni~~~~~VV~s~Ai~-~~NpE----i 83 (459)
T COG0773 13 IGI-GGIGMSGLAEILLNL--GYKVSGSDLAESPMTQRLEAL-GIEIFIGHDAENILDADVVVVSNAIK-EDNPE----I 83 (459)
T ss_pred Eee-ccccHHHHHHHHHhC--CCceECccccccHHHHHHHHC-CCeEeCCCCHHHcCCCceEEEecccC-CCCHH----H
Confidence 444 666665444 4444 77899999843 66665543 34444332224455666677777665 23343 2
Q ss_pred HHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEEE
Q 030291 96 KKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHYK 165 (180)
Q Consensus 96 ~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 165 (180)
. .++.. |.=++.- ...+.+.........-++.+++..|-.=+..+|+++|+...-
T Consensus 84 ~---~A~e~----~ipi~~r--------~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf 138 (459)
T COG0773 84 V---AALER----GIPVISR--------AEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTF 138 (459)
T ss_pred H---HHHHc----CCCeEcH--------HHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEE
Confidence 2 22222 2223310 011222222222223345667777888888889999876443
No 384
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=65.00 E-value=9.7 Score=30.91 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=49.1
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCc------------hhhccCCCCCCeeEEecCCcccCCCccEEEec
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLP------------HAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~------------~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~ 80 (180)
-.+++|+=||||+ |. +.++ +.+..+++.. +..+.|.. ..++ ..+..+..+..|+|++
T Consensus 34 LkgKtIaIIGyGSqG~-AqAl-----NLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF~--v~~~~Ea~~~ADvVvi- 103 (487)
T PRK05225 34 LKGKKIVIVGCGAQGL-NQGL-----NMRDSGLDISYALRKEAIAEKRASWRKATE-NGFK--VGTYEELIPQADLVIN- 103 (487)
T ss_pred hCCCEEEEEccCHHHH-HHhC-----CCccccceeEEeccccccccccchHHHHHh-cCCc--cCCHHHHHHhCCEEEE-
Confidence 4568999999998 44 2222 3334344322 12222221 2222 2334334567999888
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+||.....+.+++...||| |..+.++
T Consensus 104 ----LlPDt~q~~v~~~i~p~LK~---Ga~L~fs 130 (487)
T PRK05225 104 ----LTPDKQHSDVVRAVQPLMKQ---GAALGYS 130 (487)
T ss_pred ----cCChHHHHHHHHHHHhhCCC---CCEEEec
Confidence 34555556778999999999 6666664
No 385
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=64.77 E-value=35 Score=26.89 Aligned_cols=93 Identities=14% Similarity=0.102 Sum_probs=66.8
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC------CCCeeEEecCCcc---c-CCCccEEEeccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ------TDNLKYIEGDMFQ---F-IPPSDAFFFKTVFH 84 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------~~~~~~~~~d~~~---~-~~~~D~v~~~~~l~ 84 (180)
+.+|+|-=+|+|.-+.+++...+..+++.-|+++ ..+.+++ ..+....+.|... . ...||+|=. .
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence 7889999999999999999888777999999954 7766664 2234444455532 1 234777532 3
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
-+..+. .++....+.++. +|.+-++.+.
T Consensus 129 PFGSPa--PFlDaA~~s~~~---~G~l~vTATD 156 (380)
T COG1867 129 PFGSPA--PFLDAALRSVRR---GGLLCVTATD 156 (380)
T ss_pred CCCCCc--hHHHHHHHHhhc---CCEEEEEecc
Confidence 444455 789999999998 8988887664
No 386
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=64.67 E-value=59 Score=24.54 Aligned_cols=92 Identities=10% Similarity=0.123 Sum_probs=52.7
Q ss_pred ccCCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc----cCCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ----FIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~----~~~~~D~v~~~~~l~~~ 86 (180)
...+.+||-.|+| .|..+..+++.. +.+++.++.++ ..+.+++..--.+....-.. ....+|+++....
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~---- 234 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV---- 234 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC----
Confidence 5667788888886 466666666665 66788877643 44444321111111111000 1125888875322
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. ..+..+.+.|++ +|.++....
T Consensus 235 -~~---~~~~~~~~~l~~---~G~~i~~~~ 257 (330)
T cd08245 235 -SG---AAAEAALGGLRR---GGRIVLVGL 257 (330)
T ss_pred -cH---HHHHHHHHhccc---CCEEEEECC
Confidence 11 347778889999 888887653
No 387
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.56 E-value=61 Score=26.53 Aligned_cols=133 Identities=16% Similarity=0.101 Sum_probs=70.1
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCC-cccCCCccEEEeccccccCChHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDM-FQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~-~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
.+++|+=+|.|. |..+..++... ++++++.|... ....+++ ..+.+..++. .+....+|+|+.+-.+.. .++
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~~~~~~~l~~-~g~~~~~~~~~~~~l~~~D~VV~SpGi~~-~~p-- 85 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRF-GARPTVCDDDPDALRPHAE-RGVATVSTSDAVQQIADYALVVTSPGFRP-TAP-- 85 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHh-CCCEEEcCcchHhHhhcCCEEEECCCCCC-CCH--
Confidence 567899999776 55555555544 78899999743 4333332 2445544322 123446899888766542 122
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.+..+++ .|.-++.+.-........ ............++.+++..+..-+..+|+++|...
T Consensus 86 --~~~~a~~-------~gi~v~~~iel~~~~~~~--~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~ 146 (488)
T PRK03369 86 --VLAAAAA-------AGVPIWGDVELAWRLDAA--GCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRS 146 (488)
T ss_pred --HHHHHHH-------CCCcEeeHHHHhhhhhhh--hccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCce
Confidence 2333332 244455432211000000 000001123445667788888888888999888653
No 388
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.96 E-value=43 Score=22.76 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=36.1
Q ss_pred cCCCeEEEeCCcc-cHH-HHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcc-cCCCccEEEe
Q 030291 14 QGLRSMVDVGGGT-GAF-ARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFF 79 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~-~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~ 79 (180)
-.+.+||=+|+|. |.. +..|++. ++.++.++. +..+...+...+++....+.+ ....+|+|++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp-~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP-EICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC-ccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 4578899999887 322 3334454 677888863 222222223355555555533 3457898887
No 389
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=63.75 E-value=61 Score=24.43 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=50.2
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeE-EecCCcccCCCccEEEeccccccCChH
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKY-IEGDMFQFIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~-~~~d~~~~~~~~D~v~~~~~l~~~~~~ 89 (180)
..++.++|=.|+|. |..+..+++.. +.+++.++.++ ..+.+++.. ++. ...+. .....+|+++.....
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~-~~~~~vD~vi~~~~~------ 235 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQ-GAEVFAFTRSGEHQELARELG-ADWAGDSDD-LPPEPLDAAIIFAPV------ 235 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEcCChHHHHHHHHhC-CcEEeccCc-cCCCcccEEEEcCCc------
Confidence 45566777677654 44555555554 67788777643 444443211 211 11111 122248887653211
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. ..+....+.|++ +|.++....
T Consensus 236 ~--~~~~~~~~~l~~---~G~~v~~g~ 257 (329)
T cd08298 236 G--ALVPAALRAVKK---GGRVVLAGI 257 (329)
T ss_pred H--HHHHHHHHHhhc---CCEEEEEcC
Confidence 1 458888999999 899887653
No 390
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=62.70 E-value=31 Score=26.25 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=47.6
Q ss_pred eCCcc-cHHHHHHHHHCCC-CeEEEeeCch--hhccCCC--------CCCeeEEecCCcccCCCccEEEeccccccCChH
Q 030291 22 VGGGT-GAFARIISEAFPG-IKCTVLDLPH--AVTDMPQ--------TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 22 iG~G~-G~~~~~l~~~~~~-~~~~~~D~~~--~~~~a~~--------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~ 89 (180)
||+|. |.....++...+- .++..+|..+ ....+.. ..++.+..+|+ +.....|+|+.....-.-+..
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~-~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY-SDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCH-HHHCCCCEEEECCCCCCCCCC
Confidence 56666 5544444433333 3688999733 1111111 23445554444 566689998886554322221
Q ss_pred H-------HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 90 D-------CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 90 ~-------~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
. ...+++++.+.++.+++.|.+++..
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 1 1234455555444434478887765
No 391
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=62.49 E-value=16 Score=28.75 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=48.3
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCC-C-CCeeEEecCC---cccCCCccEEEeccccccCC
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQ-T-DNLKYIEGDM---FQFIPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-~-~~~~~~~~d~---~~~~~~~D~v~~~~~l~~~~ 87 (180)
++.+|+=+|+|. |..+...+... +++++.+|... ..+.+.. . ..+.....+. .+....+|+|+..-...--.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 356689999885 66666666665 66899999843 4433322 1 1121111111 11234799999753221111
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+. -+-++..+.++| ++.++-..
T Consensus 245 ~p~--lit~~~l~~mk~---g~vIvDva 267 (370)
T TIGR00518 245 APK--LVSNSLVAQMKP---GAVIVDVA 267 (370)
T ss_pred CCc--CcCHHHHhcCCC---CCEEEEEe
Confidence 111 112444566788 65544433
No 392
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=61.95 E-value=67 Score=24.28 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=53.9
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec----CCcc---c--CCCccEEEec
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG----DMFQ---F--IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~----d~~~---~--~~~~D~v~~~ 80 (180)
..++++||=.|+ |.|..+..+++.. ++++++++.++ ..+.+++..--.++.. +..+ . ...+|+++-.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 566788888874 4577777787776 67788877643 5555443211111111 1111 1 1248887752
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
... ..+....+.|++ +|.++....
T Consensus 215 -----~G~----~~~~~~~~~l~~---~G~iv~~G~ 238 (325)
T TIGR02825 215 -----VGG----EFSNTVIGQMKK---FGRIAICGA 238 (325)
T ss_pred -----CCH----HHHHHHHHHhCc---CcEEEEecc
Confidence 222 235778899999 899987654
No 393
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.69 E-value=6.2 Score=32.27 Aligned_cols=42 Identities=12% Similarity=0.053 Sum_probs=27.9
Q ss_pred cCCCeEEEeCCcccHHHHHHHHHCC----CCeEEEeeCch-hhccCC
Q 030291 14 QGLRSMVDVGGGTGAFARIISEAFP----GIKCTVLDLPH-AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~~l~~~~~----~~~~~~~D~~~-~~~~a~ 55 (180)
.+..+|+|..||+|.+.....+... ...++|.|... ...-++
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~ 231 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAK 231 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHH
Confidence 3556999999999987665544431 36789999733 444443
No 394
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=61.63 E-value=32 Score=22.71 Aligned_cols=87 Identities=11% Similarity=0.210 Sum_probs=45.2
Q ss_pred EEEeCCcc-cHH-HHHHHHHCCCCeEEEeeCchhhccCCC-------CC-CeeEEecCCc-c---cCCCccEEEeccccc
Q 030291 19 MVDVGGGT-GAF-ARIISEAFPGIKCTVLDLPHAVTDMPQ-------TD-NLKYIEGDMF-Q---FIPPSDAFFFKTVFH 84 (180)
Q Consensus 19 iLdiG~G~-G~~-~~~l~~~~~~~~~~~~D~~~~~~~a~~-------~~-~~~~~~~d~~-~---~~~~~D~v~~~~~l~ 84 (180)
|+=+|+|. |.+ +..|.+ .+..++.++-+.-.+..++ .. +..+...... . ....+|+|+..-
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v--- 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV--- 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S---
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe---
Confidence 34466665 443 333444 3777888887542222221 11 1111111111 1 233699988843
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
...+..+.++.+++.+.+ +..+++..
T Consensus 76 --Ka~~~~~~l~~l~~~~~~---~t~iv~~q 101 (151)
T PF02558_consen 76 --KAYQLEQALQSLKPYLDP---NTTIVSLQ 101 (151)
T ss_dssp --SGGGHHHHHHHHCTGEET---TEEEEEES
T ss_pred --cccchHHHHHHHhhccCC---CcEEEEEe
Confidence 222333779999999999 66666543
No 395
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.98 E-value=88 Score=25.32 Aligned_cols=127 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred cCCCeEEEeCCc-ccHHH-HHHHHHCCCCeEEEeeCch--hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChH
Q 030291 14 QGLRSMVDVGGG-TGAFA-RIISEAFPGIKCTVLDLPH--AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDE 89 (180)
Q Consensus 14 ~~~~~iLdiG~G-~G~~~-~~l~~~~~~~~~~~~D~~~--~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~ 89 (180)
....+|+=+|.| +|..+ ..++... +.++++.|... .....+ ...+.+..+...+.+..+|+|+.+-.+.. .++
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~-G~~V~~~D~~~~~~~~~l~-~~gi~~~~~~~~~~~~~~d~vv~spgi~~-~~~ 81 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNL-GYKVSGSDLKESAVTQRLL-ELGAIIFIGHDAENIKDADVVVYSSAIPD-DNP 81 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhC-CCeEEEECCCCChHHHHHH-HCCCEEeCCCCHHHCCCCCEEEECCCCCC-CCH
Confidence 345578888844 67662 4444443 78899999732 222221 22455543322123446999888766542 122
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 90 DCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 90 ~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
.+.++++. |.-++.+.-. .............++.+++..+..-+..+|+++|+.
T Consensus 82 ----~~~~a~~~-------~i~i~~~~e~--------~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~ 135 (461)
T PRK00421 82 ----ELVAAREL-------GIPVVRRAEM--------LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 135 (461)
T ss_pred ----HHHHHHHC-------CCcEEeHHHH--------HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 24444332 4335543211 011111112345566778888888889999999964
No 396
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=60.84 E-value=60 Score=24.86 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=25.8
Q ss_pred CeEEEeCCcccH----HHHHHHHHCCCCeEEEeeCc
Q 030291 17 RSMVDVGGGTGA----FARIISEAFPGIKCTVLDLP 48 (180)
Q Consensus 17 ~~iLdiG~G~G~----~~~~l~~~~~~~~~~~~D~~ 48 (180)
-..+=.|+|||- .++.|.+.+|+.+++++|+.
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~ 205 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPE 205 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCC
Confidence 567778888875 46677888999999999983
No 397
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.49 E-value=76 Score=24.42 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=50.2
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEecC---C-------cc--cCCCccEEE
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEGD---M-------FQ--FIPPSDAFF 78 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~d---~-------~~--~~~~~D~v~ 78 (180)
.++.+||=.|+|. |..+..+++.. +. ++++++.++ ....+++..--.++..+ . .+ ....+|+++
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vi 254 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVI 254 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEE
Confidence 3567777777644 55556666665 56 788887643 33333321111111111 1 00 112589887
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
-... .. ..+....+.+++ +|.++....
T Consensus 255 d~~g-----~~---~~~~~~~~~l~~---~G~~v~~g~ 281 (361)
T cd08231 255 EASG-----HP---AAVPEGLELLRR---GGTYVLVGS 281 (361)
T ss_pred ECCC-----Ch---HHHHHHHHHhcc---CCEEEEEcC
Confidence 5321 11 347777889999 899987654
No 398
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=59.56 E-value=75 Score=24.09 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=52.8
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe---cCCcc------cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ------FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~------~~~~~D~v~~~~ 81 (180)
+.++.+||-.|+|. |..+..+++.. +.+++.+..++ ..+..++..-..++. .+..+ ....+|+++...
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECC
Confidence 45677899888764 66777777775 67777775533 444333211111111 11101 112489887642
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
. .. ..+..+.+.|++ +|.++....
T Consensus 236 g-----~~---~~~~~~~~~l~~---~G~~i~~g~ 259 (337)
T cd08261 236 G-----NP---ASMEEAVELVAH---GGRVVLVGL 259 (337)
T ss_pred C-----CH---HHHHHHHHHHhc---CCEEEEEcC
Confidence 2 11 457888899999 888876543
No 399
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=59.00 E-value=80 Score=24.19 Aligned_cols=87 Identities=13% Similarity=0.146 Sum_probs=47.4
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEE---------ecCC--cccCCCccEEEeccccc
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYI---------EGDM--FQFIPPSDAFFFKTVFH 84 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~---------~~d~--~~~~~~~D~v~~~~~l~ 84 (180)
+|+=+|+|. +.++..|.+.. ..++.+--++.++..++. ++... ..-. .+..+.+|+|+..-=-+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~ 78 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG--HDVTLLVRSRRLEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY 78 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHHHHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEeccc
Confidence 677788887 45566666664 234444334444444431 11111 1111 11334699988733221
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+..++++.+...+++ ...+++..
T Consensus 79 -----q~~~al~~l~~~~~~---~t~vl~lq 101 (307)
T COG1893 79 -----QLEEALPSLAPLLGP---NTVVLFLQ 101 (307)
T ss_pred -----cHHHHHHHhhhcCCC---CcEEEEEe
Confidence 223779999999999 66666654
No 400
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=59.00 E-value=19 Score=27.10 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.4
Q ss_pred CCeEEEeCCcccHHHHHHHHHCCC----CeEEEeeCch
Q 030291 16 LRSMVDVGGGTGAFARIISEAFPG----IKCTVLDLPH 49 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~~~----~~~~~~D~~~ 49 (180)
+..|+=+|++.|.....|.+.++. .++..+|..+
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~ 98 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRK 98 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCc
Confidence 569999999999999999888765 5789999744
No 401
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=58.92 E-value=3.7 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=17.0
Q ss_pred eEEEeCCcccHHHHHHHHHC-CCCeEEEe
Q 030291 18 SMVDVGGGTGAFARIISEAF-PGIKCTVL 45 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~-~~~~~~~~ 45 (180)
-=+|||||.|....+..... ...++.-+
T Consensus 5 gNIDIGcG~GNTmda~fRsct~htSyYy~ 33 (124)
T PF07101_consen 5 GNIDIGCGAGNTMDAAFRSCTLHTSYYYL 33 (124)
T ss_pred CccccccCCCcchhhhhhccccccceEEE
Confidence 34799999998766544432 33344443
No 402
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.76 E-value=55 Score=24.49 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=44.8
Q ss_pred eEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeC-chhhccCCC-CCCe-----eE--E-ecCCcccCCCccEEEecccccc
Q 030291 18 SMVDVGGGT-GA-FARIISEAFPGIKCTVLDL-PHAVTDMPQ-TDNL-----KY--I-EGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 18 ~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~~-----~~--~-~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
+|+=||+|. |. ++..|.+. +..++.++. ++..+..++ ..++ .. . ..+. .....+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~d~vila~k~-- 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDP-AELGPQDLVILAVKA-- 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCCh-hHcCCCCEEEEeccc--
Confidence 477788876 33 44444444 556888886 333333322 1111 00 0 0111 122468988874332
Q ss_pred CChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 86 FDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 86 ~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.....+++.+...+.+ +..++..
T Consensus 77 ---~~~~~~~~~l~~~l~~---~~~iv~~ 99 (304)
T PRK06522 77 ---YQLPAALPSLAPLLGP---DTPVLFL 99 (304)
T ss_pred ---ccHHHHHHHHhhhcCC---CCEEEEe
Confidence 2233778888888887 5555543
No 403
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=58.64 E-value=87 Score=24.54 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=53.2
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCc-h-hhccCCCCCCeeEEec-C---CcccCCCccEEEeccccccC
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLP-H-AVTDMPQTDNLKYIEG-D---MFQFIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~-~-~~~~a~~~~~~~~~~~-d---~~~~~~~~D~v~~~~~l~~~ 86 (180)
+++++|+=.|+|. |..+..+++.. ++++++++.+ + ..+.+++..--.++.. + +.+..+.+|+++-...
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G---- 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVS---- 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCC----
Confidence 3577888888765 66667777776 6778888763 3 2344433211111111 1 1011234788775322
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.+ ..+....+.+++ +|.++.....
T Consensus 252 -~~---~~~~~~~~~l~~---~G~iv~vG~~ 275 (375)
T PLN02178 252 -AE---HALLPLFSLLKV---SGKLVALGLP 275 (375)
T ss_pred -cH---HHHHHHHHhhcC---CCEEEEEccC
Confidence 22 347778889999 8999887643
No 404
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=58.50 E-value=80 Score=24.03 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=50.4
Q ss_pred eEEEeCCcc-cHHHHH-HHHHCCCCeEEEeeCch-h-hccCCC--------CCCeeEEecCCcccCCCccEEEecccccc
Q 030291 18 SMVDVGGGT-GAFARI-ISEAFPGIKCTVLDLPH-A-VTDMPQ--------TDNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 18 ~iLdiG~G~-G~~~~~-l~~~~~~~~~~~~D~~~-~-~~~a~~--------~~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
+|.=||+|. |..... ++......++..+|..+ . ...+.. ..+......+. +.....|+|+.....-.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~~ 80 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAPQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCCC
Confidence 566788876 433333 33332123789999733 2 222221 12333444444 34567999887554322
Q ss_pred CChH-------HHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 86 FDDE-------DCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 86 ~~~~-------~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
-+.. .-..+++++.+.++.+++.+.+++..
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 2211 12245666666666555578877764
No 405
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=58.04 E-value=14 Score=29.20 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=26.8
Q ss_pred ccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch
Q 030291 7 KDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH 49 (180)
Q Consensus 7 ~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~ 49 (180)
+.+. +.+.++||-|.+|..... .++...| .++++||++.
T Consensus 29 ~aL~--i~~~d~vl~ItSaG~N~L-~yL~~~P-~~I~aVDlNp 67 (380)
T PF11899_consen 29 EALN--IGPDDRVLTITSAGCNAL-DYLLAGP-KRIHAVDLNP 67 (380)
T ss_pred HHhC--CCCCCeEEEEccCCchHH-HHHhcCC-ceEEEEeCCH
Confidence 3444 788999999966555444 4455544 5899999954
No 406
>PLN02494 adenosylhomocysteinase
Probab=57.88 E-value=35 Score=27.93 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=52.0
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
-.+++++=+|+|. |......++.+ +++++++|.+. ....+.. ....+. +..+.....|+++....- ..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADVVI~tTGt-----~~- 321 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM-EGYQVL--TLEDVVSEADIFVTTTGN-----KD- 321 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCEEEECCCC-----cc-
Confidence 4578899999987 55555555555 77899998743 2223321 112221 232234568998873221 11
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
-+..+..+.+|+ |+.++.+..
T Consensus 322 -vI~~e~L~~MK~---GAiLiNvGr 342 (477)
T PLN02494 322 -IIMVDHMRKMKN---NAIVCNIGH 342 (477)
T ss_pred -chHHHHHhcCCC---CCEEEEcCC
Confidence 224677789999 667666543
No 407
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=57.38 E-value=53 Score=28.37 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHH
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~ 93 (180)
.+|.=||+|. | .++..+.......+++++|.++ ..+.+++..-......+..+.....|+|+.. ++......
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 78 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLA-----VPVLAMEK 78 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEEC-----CCHHHHHH
Confidence 4566777765 2 2344444442224688999854 4444433211100111221123468888873 33444557
Q ss_pred HHHHHHHhhcc
Q 030291 94 LLKKCREAIAS 104 (180)
Q Consensus 94 ~l~~~~~~L~p 104 (180)
+++++...+++
T Consensus 79 vl~~l~~~~~~ 89 (735)
T PRK14806 79 VLADLKPLLSE 89 (735)
T ss_pred HHHHHHHhcCC
Confidence 78888888877
No 408
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=57.07 E-value=73 Score=23.14 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=51.3
Q ss_pred CCCeEEEeCCcccH--HHHHH--HHHCCCCeEEEeeCch-hhccCCC-------CCCeeEEecCCcc----cCCCccEEE
Q 030291 15 GLRSMVDVGGGTGA--FARII--SEAFPGIKCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ----FIPPSDAFF 78 (180)
Q Consensus 15 ~~~~iLdiG~G~G~--~~~~l--~~~~~~~~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~----~~~~~D~v~ 78 (180)
+.+.|+++.|+.|. .+..| +.+..+-+++.+-..+ .+...++ ...++|+.++..+ .+...|.++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 46778899655442 34443 3444466777666522 2222211 2446888887533 344689888
Q ss_pred eccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 79 FKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 79 ~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.-.-.+ .+.+++.++++. ++.|.+++.....
T Consensus 121 VDc~~~--------d~~~~vl~~~~~-~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 121 VDCKRE--------DFAARVLRAAKL-SPRGAVVVCYNAF 151 (218)
T ss_pred EeCCch--------hHHHHHHHHhcc-CCCceEEEEeccc
Confidence 744432 334455555554 2267777766543
No 409
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.81 E-value=66 Score=25.84 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred ccCCCeEEEeC-CcccH------HHHHHHHHCCCCeEEEeeC--chhhccCCC---CCCeeEEec-CCccc---------
Q 030291 13 FQGLRSMVDVG-GGTGA------FARIISEAFPGIKCTVLDL--PHAVTDMPQ---TDNLKYIEG-DMFQF--------- 70 (180)
Q Consensus 13 ~~~~~~iLdiG-~G~G~------~~~~l~~~~~~~~~~~~D~--~~~~~~a~~---~~~~~~~~~-d~~~~--------- 70 (180)
...+..|+=+| -|.|- ++..+.+....+-.++.|- ..+.++.++ ..++.|+.. +..++
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 34556677776 24442 2333334434555677775 225555443 566776653 22121
Q ss_pred ---CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeC
Q 030291 71 ---IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVID 119 (180)
Q Consensus 71 ---~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~ 119 (180)
-..||+|++--.=.|-.+...-+-+..+.++++| +-.+++.|-...
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~P---d~vi~VmDasiG 226 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKP---DEIIFVMDASIG 226 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCC---CeEEEEEecccc
Confidence 1269999995554454555555567788899999 788888886544
No 410
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=56.69 E-value=75 Score=23.17 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=39.9
Q ss_pred cCCCeEEEeCCcccHHHH--HHHHHCCCCeEEEeeC--chhhccCCCCCCeeEEecCCcc-cCCCccEEEec
Q 030291 14 QGLRSMVDVGGGTGAFAR--IISEAFPGIKCTVLDL--PHAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFK 80 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~~--~l~~~~~~~~~~~~D~--~~~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~ 80 (180)
..+.+||=||+|.=..-+ .|++. +++++.+-+ ++-+....+.+++++...++.. ....+++|++.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 346789999999855433 33444 666776643 4322222335678888877743 34568888774
No 411
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=56.64 E-value=92 Score=24.17 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=54.3
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec-C----Ccc----cC-CCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG-D----MFQ----FI-PPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~-d----~~~----~~-~~~D~v~~ 79 (180)
++++++||=+|+|. |..+..+++.. ++ +++++|.++ ..+.+++..--.++.. + ..+ .. ..+|+|+-
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 262 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFE 262 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEE
Confidence 56678888888754 56666677776 56 688888744 5555543211111111 1 111 01 24888875
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~~ 117 (180)
.. ... ..+....+.+++ + |.+++....
T Consensus 263 ~~-----g~~---~~~~~a~~~l~~---~~G~~v~~g~~ 290 (368)
T cd08300 263 CI-----GNV---KVMRAALEACHK---GWGTSVIIGVA 290 (368)
T ss_pred CC-----CCh---HHHHHHHHhhcc---CCCeEEEEccC
Confidence 32 212 457778889988 6 888877643
No 412
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=56.43 E-value=84 Score=25.15 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=47.3
Q ss_pred CCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCC-CCCeeEEecCCccc-------CCCccEEEeccccc
Q 030291 16 LRSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQF-------IPPSDAFFFKTVFH 84 (180)
Q Consensus 16 ~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~ 84 (180)
..+++=+|+ |.++..+++.. .+..++.+|.++ ..+..++ ..++.++.+|..+. ...+|.+++..-
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~-- 306 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN-- 306 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC--
Confidence 566777777 44555544432 256799999844 5555543 34677888888542 235888776322
Q ss_pred cCChHHHHHHHHHHHHhhcc
Q 030291 85 FFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p 104 (180)
+....-+...+.+.+.+
T Consensus 307 ---~~~~n~~~~~~~~~~~~ 323 (453)
T PRK09496 307 ---DDEANILSSLLAKRLGA 323 (453)
T ss_pred ---CcHHHHHHHHHHHHhCC
Confidence 22222334455566665
No 413
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=56.34 E-value=94 Score=24.17 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=54.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEe-cC----Ccc----c-CCCccEEEe
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIE-GD----MFQ----F-IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~-~d----~~~----~-~~~~D~v~~ 79 (180)
.+.+++||=.|+|. |..+..+++.. ++ +++.+|.++ ..+.+++..--..+. .+ ..+ . ...+|+++-
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~-G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMA-KASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 56678888888765 66777777776 55 688888744 555554421111111 11 101 0 124788775
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~~ 117 (180)
... .+ ..+....+.+++ + |.+++....
T Consensus 262 ~~G-----~~---~~~~~~~~~~~~---~~G~~v~~g~~ 289 (368)
T TIGR02818 262 CIG-----NV---NVMRAALECCHK---GWGESIIIGVA 289 (368)
T ss_pred CCC-----CH---HHHHHHHHHhhc---CCCeEEEEecc
Confidence 322 22 447777888887 6 888877653
No 414
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.86 E-value=97 Score=24.20 Aligned_cols=95 Identities=14% Similarity=0.222 Sum_probs=54.2
Q ss_pred ccCCCeEEEeC-CcccHHHHHHHHHCCCCeEEEeeCch-hhccC-CCCCCeeEEecC--C--ccc-CCCccEEEec-ccc
Q 030291 13 FQGLRSMVDVG-GGTGAFARIISEAFPGIKCTVLDLPH-AVTDM-PQTDNLKYIEGD--M--FQF-IPPSDAFFFK-TVF 83 (180)
Q Consensus 13 ~~~~~~iLdiG-~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a-~~~~~~~~~~~d--~--~~~-~~~~D~v~~~-~~l 83 (180)
+.+++++-=+| +|.|.++..+++.. +.+++++|-++ --+.+ +....-.|+... . ... ....|.++-. ..+
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL 257 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec
Confidence 56667666566 45799999999998 88999999853 33333 222222222221 1 111 1124433211 001
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
.. ..+..+...||+ +|.+++.....
T Consensus 258 -----a~--~~~~~~~~~lk~---~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 258 -----AE--HALEPLLGLLKV---NGTLVLVGLPE 282 (360)
T ss_pred -----cc--cchHHHHHHhhc---CCEEEEEeCcC
Confidence 11 336777889999 99999987644
No 415
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=55.79 E-value=68 Score=23.96 Aligned_cols=88 Identities=17% Similarity=0.253 Sum_probs=48.4
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHC--CCCeEEEeeCc-h-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHH
Q 030291 17 RSMVDVGGGT-G-AFARIISEAF--PGIKCTVLDLP-H-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~--~~~~~~~~D~~-~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.+|.=||||. | .++..+++.. +...++..|.+ + .++......+++. ..+..+.....|+|+. .+++..
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~-~~~~~e~~~~aDvVil-----av~p~~ 77 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKG-THNKKELLTDANILFL-----AMKPKD 77 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceE-eCCHHHHHhcCCEEEE-----EeCHHH
Confidence 4677788876 3 3445555542 22457777752 2 3333222212332 2233222345798887 445666
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEE
Q 030291 91 CLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..+++..+...+++ +.+++.
T Consensus 78 ~~~vl~~l~~~~~~----~~liIs 97 (279)
T PRK07679 78 VAEALIPFKEYIHN----NQLIIS 97 (279)
T ss_pred HHHHHHHHHhhcCC----CCEEEE
Confidence 66778888888877 555554
No 416
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.76 E-value=90 Score=23.80 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=51.2
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCe-EEEeeCch-hhccCCCCCCeeEEe---cC-------CcccC--CCccEE
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIK-CTVLDLPH-AVTDMPQTDNLKYIE---GD-------MFQFI--PPSDAF 77 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~-~~~~D~~~-~~~~a~~~~~~~~~~---~d-------~~~~~--~~~D~v 77 (180)
..++.+||=.|+|. |..+..+++.. +.+ ++.++.++ ..+.+++...-.++. .+ +.... ..+|+|
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 45677887777665 66777777776 555 77776533 333332211111111 11 10111 248998
Q ss_pred EeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 78 FFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 78 ~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+-...- . ..+....+.|++ +|.++...
T Consensus 239 ld~~g~-----~---~~~~~~~~~l~~---~G~~v~~g 265 (343)
T cd05285 239 IECTGA-----E---SCIQTAIYATRP---GGTVVLVG 265 (343)
T ss_pred EECCCC-----H---HHHHHHHHHhhc---CCEEEEEc
Confidence 864331 1 357788899999 89887664
No 417
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=55.62 E-value=18 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=16.1
Q ss_pred EeCCccc--HHHHHHH--HHCCCCeEEEeeCc
Q 030291 21 DVGGGTG--AFARIIS--EAFPGIKCTVLDLP 48 (180)
Q Consensus 21 diG~G~G--~~~~~l~--~~~~~~~~~~~D~~ 48 (180)
|||+..| .....+. ...+..+++++|+.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~ 32 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPN 32 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECC
Confidence 8999999 5544443 34678899999983
No 418
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.60 E-value=1.1e+02 Score=24.59 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCeEEEeCC-cccHHHHHHHHHCCCCeEEEeeCchh---hccCCCCCCeeEEecCCc-ccCCCccEEEeccccccCChHH
Q 030291 16 LRSMVDVGG-GTGAFARIISEAFPGIKCTVLDLPHA---VTDMPQTDNLKYIEGDMF-QFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 16 ~~~iLdiG~-G~G~~~~~l~~~~~~~~~~~~D~~~~---~~~a~~~~~~~~~~~d~~-~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.++|+=+|. |+|..+..++... +.++++.|.... .... ..++.+..+... .....+|+++.+-.+..- .+
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~-G~~v~~~D~~~~~~~~~~l--~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~-~~- 80 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLAR-GVTPRVIDTRITPPGLDKL--PENVERHTGSLNDEWLLAADLIVASPGIALA-HP- 80 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCCCchhHHHH--hcCCEEEeCCCCHHHhcCCCEEEECCCCCCC-CH-
Confidence 345666664 4566665655554 678999997321 1111 125555554321 124468999887766421 22
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
.+.+ +.+. |.-++.+.-. +.... ......-++.+++..|..-+..+|+.+|+...
T Consensus 81 ---~~~~---a~~~----g~~v~~~~el--------~~~~~-~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 81 ---SLSA---AADA----GIEIVGDIEL--------FCREA-QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred ---HHHH---HHHC----CCeEEEHHHH--------Hhhhc-CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 2333 3333 5555554211 00100 11234455677888888888999999998643
No 419
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.58 E-value=92 Score=23.85 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=53.6
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccCCCCCCeeEEec---CCcc----cC--CCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ----FI--PPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~----~~--~~~D~v~~~ 80 (180)
++++++||=.|+|. |..+..+++.. +. .++++|.++ ..+.+++..--.++.. +... .. ..+|+++-.
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEEC
Confidence 55677888888764 56666677766 55 588888743 4444443211111111 1111 11 248988753
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. .. ..+..+.+.|++ +|.++.....
T Consensus 243 ~g-----~~---~~~~~~~~~l~~---~G~~v~~g~~ 268 (351)
T cd08285 243 GG-----GQ---DTFEQALKVLKP---GGTISNVNYY 268 (351)
T ss_pred CC-----CH---HHHHHHHHHhhc---CCEEEEeccc
Confidence 22 11 457888999999 8988876543
No 420
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.45 E-value=98 Score=24.15 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=58.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeC-chhhccCCCCCCeeEEec-CCccc---------CCCccEEEec
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDL-PHAVTDMPQTDNLKYIEG-DMFQF---------IPPSDAFFFK 80 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~-d~~~~---------~~~~D~v~~~ 80 (180)
..+++++.=+|+|. |.....-++...-.+++++|+ ++-.+.+++..-.++++- |...+ ...+|..+
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysf-- 267 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSF-- 267 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEE--
Confidence 56778888888776 555544455555668999999 458888887444444432 23221 12466544
Q ss_pred cccccCChHHHHHHHHHHHHhhccCCCC-cEEEEEEeeeC
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIASNGER-GKVLIIDIVID 119 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p~~~~-G~~~~~~~~~~ 119 (180)
+...+. +.+++....... | |.-++......
T Consensus 268 ---Ec~G~~---~~m~~al~s~h~---GwG~sv~iGv~~~ 298 (375)
T KOG0022|consen 268 ---ECIGNV---STMRAALESCHK---GWGKSVVIGVAAA 298 (375)
T ss_pred ---EecCCH---HHHHHHHHHhhc---CCCeEEEEEecCC
Confidence 333333 667777777777 6 77777665443
No 421
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=55.37 E-value=97 Score=27.27 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=66.3
Q ss_pred eEEEeC-CcccHHH-HHHHHHCCCCeEEEeeCch--hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHHH
Q 030291 18 SMVDVG-GGTGAFA-RIISEAFPGIKCTVLDLPH--AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCLK 93 (180)
Q Consensus 18 ~iLdiG-~G~G~~~-~~l~~~~~~~~~~~~D~~~--~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~~ 93 (180)
+|+=+| ||+|..+ ..++... +.++++.|... ..... +..++.+..+.-.+....+|+|+.+-.+.. .++.
T Consensus 6 ~i~viG~G~sG~salA~~L~~~-G~~V~~sD~~~~~~~~~L-~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~-~~p~--- 79 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR-GYSVSGSDLSEGKTVEKL-KAKGARFFLGHQEEHVPEDAVVVYSSSISK-DNVE--- 79 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC-CCeEEEECCCCChHHHHH-HHCCCEEeCCCCHHHcCCCCEEEECCCcCC-CCHH---
Confidence 466666 4566655 3344443 78899999732 22222 123566655543234456899888766643 2222
Q ss_pred HHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 94 LLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 94 ~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+..++ +. |.-++.+.-. .............++.+++.+|..-+..+|+++|+.
T Consensus 80 -~~~a~---~~----gi~v~~~~el--------~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~ 132 (809)
T PRK14573 80 -YLSAK---SR----GNRLVHRAEL--------LAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKD 132 (809)
T ss_pred -HHHHH---HC----CCcEEeHHHH--------HHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence 33332 22 4445543211 001111112345566778888888888899998875
No 422
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.02 E-value=1.1e+02 Score=24.59 Aligned_cols=126 Identities=15% Similarity=0.213 Sum_probs=68.7
Q ss_pred CCCeEEEeCC-cccHHHHHHHHHCCC-CeEEEeeCch---hhccCCCCCCeeEEecCC-cccCCCccEEEeccccccCCh
Q 030291 15 GLRSMVDVGG-GTGAFARIISEAFPG-IKCTVLDLPH---AVTDMPQTDNLKYIEGDM-FQFIPPSDAFFFKTVFHFFDD 88 (180)
Q Consensus 15 ~~~~iLdiG~-G~G~~~~~l~~~~~~-~~~~~~D~~~---~~~~a~~~~~~~~~~~d~-~~~~~~~D~v~~~~~l~~~~~ 88 (180)
+.++|+=+|. |+|..+.+++....+ ..+++.|... ..+..+ . ++++..+.. .+....+|+|+.+-.+.. .+
T Consensus 6 ~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~-~~ 82 (438)
T PRK04663 6 GIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-E-DVELHSGGWNLEWLLEADLVVTNPGIAL-AT 82 (438)
T ss_pred CCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-c-CCEEEeCCCChHHhccCCEEEECCCCCC-CC
Confidence 3356777774 457766666655434 7899999732 112221 2 566655532 123557999888776642 22
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
+. +.++++ . |.-++.+.-. +.... .......++.+++..|..-+..+|+.+|...
T Consensus 83 p~----~~~a~~---~----gi~i~~~~el--------~~~~~-~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~ 137 (438)
T PRK04663 83 PE----IQQVLA---A----GIPVVGDIEL--------FAWAV-DKPVIAITGSNGKSTVTDLTGVMAKAAGVKV 137 (438)
T ss_pred HH----HHHHHH---C----CCcEEEHHHH--------HHhhc-CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence 22 333332 2 4334433211 00100 1123345567778888888888888888764
No 423
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.97 E-value=19 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=25.7
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEE---eeC
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTV---LDL 47 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~---~D~ 47 (180)
.-.+|.|||-|.++..+...++...++. +|-
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR 217 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDR 217 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecc
Confidence 6789999999999999998877666655 664
No 424
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.49 E-value=91 Score=23.46 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=49.7
Q ss_pred CCeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------C------------CCeeEEecCCcc
Q 030291 16 LRSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------T------------DNLKYIEGDMFQ 69 (180)
Q Consensus 16 ~~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------~------------~~~~~~~~d~~~ 69 (180)
-.+|.=||+|. | .++..++.. +..++++|.+. .++.+++ . .++.+ ..+. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-H
Confidence 35677788875 3 344444444 67899999854 5443211 1 11211 1222 3
Q ss_pred cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 70 FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 70 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.....|+|+..-. + .......+++++.+.+++ +.+++++.
T Consensus 80 ~~~~aD~Vieav~-e--~~~~k~~v~~~l~~~~~~----~~il~s~t 119 (295)
T PLN02545 80 ELRDADFIIEAIV-E--SEDLKKKLFSELDRICKP----SAILASNT 119 (295)
T ss_pred HhCCCCEEEEcCc-c--CHHHHHHHHHHHHhhCCC----CcEEEECC
Confidence 3446888877422 1 123345778889988888 56665443
No 425
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=54.44 E-value=51 Score=23.09 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=46.3
Q ss_pred eEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeCch-hhccCCC-------------------CCCeeEEecCCcccCCCcc
Q 030291 18 SMVDVGGGT-GA-FARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------------TDNLKYIEGDMFQFIPPSD 75 (180)
Q Consensus 18 ~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------------~~~~~~~~~d~~~~~~~~D 75 (180)
+|-=+|.|- |. .+..+++. +.+++++|..+ .++..++ ..+..+ ..|........|
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai~~ad 78 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAIKDAD 78 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHHHH-S
T ss_pred EEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhhhccc
Confidence 344566555 33 23333444 67899999943 4444432 122222 122211233577
Q ss_pred EEEecc-c-c--ccCCh-HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 76 AFFFKT-V-F--HFFDD-EDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 76 ~v~~~~-~-l--~~~~~-~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
+++..- + . ...+| ....++++.+.+.+++ |.+++.....+..
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 766522 1 1 11112 2244779999999998 7777766544443
No 426
>PRK08655 prephenate dehydrogenase; Provisional
Probab=54.38 E-value=50 Score=26.67 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=40.5
Q ss_pred eEEEeC-Ccc-cH-HHHHHHHHCCCCeEEEeeCch-hh-ccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 18 SMVDVG-GGT-GA-FARIISEAFPGIKCTVLDLPH-AV-TDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 18 ~iLdiG-~G~-G~-~~~~l~~~~~~~~~~~~D~~~-~~-~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+|.=|| +|. |. ++..+.+. +..++++|.+. .. ..+.+ .++.+ ..+..+.....|+|+..- +.....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~-~gv~~-~~~~~e~~~~aDvVIlav-----p~~~~~ 72 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE-LGVEY-ANDNIDAAKDADIVIISV-----PINVTE 72 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH-cCCee-ccCHHHHhccCCEEEEec-----CHHHHH
Confidence 455565 342 33 44444443 45688888743 32 22222 12221 222222344689888743 333344
Q ss_pred HHHHHHHHhhcc
Q 030291 93 KLLKKCREAIAS 104 (180)
Q Consensus 93 ~~l~~~~~~L~p 104 (180)
.+++++...+++
T Consensus 73 ~vl~~l~~~l~~ 84 (437)
T PRK08655 73 DVIKEVAPHVKE 84 (437)
T ss_pred HHHHHHHhhCCC
Confidence 778888888887
No 427
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.98 E-value=31 Score=24.24 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=28.7
Q ss_pred CCCccEEEeccccccCCh----------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 IPPSDAFFFKTVFHFFDD----------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~~----------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+..|+|+.+++|+-+.- .-..+++.++.++|++ +-.++...+
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~---~allIW~tt 100 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI---ECLIVWNTA 100 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC---ccEEEEecC
Confidence 345899999999876532 2234667778888888 555555443
No 428
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.46 E-value=1e+02 Score=23.81 Aligned_cols=92 Identities=12% Similarity=0.198 Sum_probs=52.2
Q ss_pred CCCeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCC-------------------CCCeeEEecCCcccCC
Q 030291 15 GLRSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQ-------------------TDNLKYIEGDMFQFIP 72 (180)
Q Consensus 15 ~~~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-------------------~~~~~~~~~d~~~~~~ 72 (180)
+-++|-=||+|+ | .++..++.. +..++..|.+. .++.++. ..++++. .++.+...
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av~ 82 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACVA 82 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHhc
Confidence 346788888885 2 344444444 78899999843 4443221 1222322 22212334
Q ss_pred CccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 73 PSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 73 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
..|+|+-+ +.+.. +.+..+++++-+.++| +.++-+.+
T Consensus 83 ~aDlViEa-vpE~l--~vK~~lf~~l~~~~~~----~aIlaSnT 119 (321)
T PRK07066 83 DADFIQES-APERE--ALKLELHERISRAAKP----DAIIASST 119 (321)
T ss_pred CCCEEEEC-CcCCH--HHHHHHHHHHHHhCCC----CeEEEECC
Confidence 68887764 22222 2245789999999998 55555443
No 429
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=53.22 E-value=98 Score=23.48 Aligned_cols=92 Identities=11% Similarity=0.134 Sum_probs=50.8
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc------cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ------FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~------~~~~~D~v~~~~ 81 (180)
.+++.+||-.|+|. |..+..+++......++.++.++ ..+.+++..-..++.. +..+ ....+|+++-..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 45677888877653 66666677766323677776643 3333332111111111 1101 113589887532
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.- . ..+....+.|++ +|.++...
T Consensus 245 g~------~--~~~~~~~~~l~~---~G~~v~~g 267 (347)
T cd05278 245 GF------E--ETFEQAVKVVRP---GGTIANVG 267 (347)
T ss_pred CC------H--HHHHHHHHHhhc---CCEEEEEc
Confidence 21 1 357888899999 88887664
No 430
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.30 E-value=32 Score=25.20 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=33.9
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHC--CCCeEEEeeC--chhhccCCCCCCeeEEecCC
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAF--PGIKCTVLDL--PHAVTDMPQTDNLKYIEGDM 67 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~--~~~~~~a~~~~~~~~~~~d~ 67 (180)
...+..||=.||..|.+..+++..+ .++.+.+.-- +.|.+-+. ..++.....|+
T Consensus 4 ~~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~-~~gl~~~kLDV 61 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI-QFGLKPYKLDV 61 (289)
T ss_pred ccCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH-hhCCeeEEecc
Confidence 3567789999999999999888775 4666655543 22433332 22344444454
No 431
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=52.00 E-value=96 Score=23.77 Aligned_cols=79 Identities=11% Similarity=0.169 Sum_probs=42.1
Q ss_pred eEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCchhhccCCC-CCCe--------e-----E-EecCCcccCCCccEEEec
Q 030291 18 SMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPHAVTDMPQ-TDNL--------K-----Y-IEGDMFQFIPPSDAFFFK 80 (180)
Q Consensus 18 ~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~~~~~a~~-~~~~--------~-----~-~~~d~~~~~~~~D~v~~~ 80 (180)
+|.=||+|. | .++..|.+. +..++.+|.++..+..++ ...+ . + ...+. +....+|+|+..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA--GADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 577788886 3 455555555 556888887442222221 0000 0 1 01122 233468988873
Q ss_pred cccccCChHHHHHHHHHHHHhhcc
Q 030291 81 TVFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 81 ~~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
-- ......+++.+...+++
T Consensus 81 vk-----~~~~~~~~~~l~~~~~~ 99 (341)
T PRK08229 81 VK-----SAATADAAAALAGHARP 99 (341)
T ss_pred ec-----CcchHHHHHHHHhhCCC
Confidence 32 22233678888888887
No 432
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=51.91 E-value=85 Score=22.34 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCCeEEEeCCcc-cHH-HHHHHHHCCCCeEEEeeCc--hhhccCCCCCCeeEEecCCcc-cCCCccEEEec
Q 030291 15 GLRSMVDVGGGT-GAF-ARIISEAFPGIKCTVLDLP--HAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFFK 80 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~-~~~l~~~~~~~~~~~~D~~--~~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~~ 80 (180)
.+.+||=||+|. |.. +..|++. ++.++.++.. +.+........+.+....+.. ....+|+|++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEc
Confidence 467899999876 332 2334444 5678888642 222222223456666554433 35578988873
No 433
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.84 E-value=1e+02 Score=23.16 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=49.1
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCC-----------------------CCCeeEEecCCccc
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQ-----------------------TDNLKYIEGDMFQF 70 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~-----------------------~~~~~~~~~d~~~~ 70 (180)
++|.=||+|. | .++..+++. +..++.+|.++ .++.+.+ ..++++ ..+..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 3567778875 2 344444444 56789999844 5555431 012222 2233223
Q ss_pred CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 71 IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
....|+|+..-. . .......++.++.+.+++ +.++.+++
T Consensus 79 ~~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~----~~il~~~t 117 (288)
T PRK09260 79 VADADLVIEAVP-E--KLELKKAVFETADAHAPA----ECYIATNT 117 (288)
T ss_pred hcCCCEEEEecc-C--CHHHHHHHHHHHHhhCCC----CcEEEEcC
Confidence 456888886422 1 112234678888888888 66555443
No 434
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.84 E-value=1.2e+02 Score=24.21 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=47.5
Q ss_pred eEEEeCCcccHHHHHHHHHC--CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCC
Q 030291 18 SMVDVGGGTGAFARIISEAF--PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~ 87 (180)
+|+=+|+ |..+..+++.. .+..++.+|.+. ..+.++....+.+..+|..+. ...+|.+++.. +
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~-----~ 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT-----D 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec-----C
Confidence 4556666 55666555532 266789999844 555554435677888888542 23688877742 2
Q ss_pred hHHHHHHHHHHHHhhcc
Q 030291 88 DEDCLKLLKKCREAIAS 104 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p 104 (180)
+......+....+.+.|
T Consensus 75 ~~~~n~~~~~~~r~~~~ 91 (453)
T PRK09496 75 SDETNMVACQIAKSLFG 91 (453)
T ss_pred ChHHHHHHHHHHHHhcC
Confidence 33333445566666655
No 435
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=50.89 E-value=1.1e+02 Score=23.53 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=55.3
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCC-CCCCeeEEec----CCcc----c-CCCccEEEe
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMP-QTDNLKYIEG----DMFQ----F-IPPSDAFFF 79 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-~~~~~~~~~~----d~~~----~-~~~~D~v~~ 79 (180)
..++++||=.|+ |.|..+..+++.. ++++++++.++ ..+.++ +..--.++.. +..+ . ...+|+++-
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 566788988887 3577888888776 77888887644 444443 2111111111 1111 0 124888775
Q ss_pred ccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 80 KTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 80 ~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
.. .. ..+..+.+.|++ +|.+++....
T Consensus 235 ~v-----G~----~~~~~~~~~l~~---~G~iv~~G~~ 260 (348)
T PLN03154 235 NV-----GG----DMLDAALLNMKI---HGRIAVCGMV 260 (348)
T ss_pred CC-----CH----HHHHHHHHHhcc---CCEEEEECcc
Confidence 22 21 347788899999 8999887643
No 436
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=50.38 E-value=58 Score=22.54 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=46.0
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeC--chhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDL--PHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
..++|.=||.|+=..+.++--+-.+..++.-.. +...++|++. .+ ...++.+.....|+|+. .+||..+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~-Gf--~v~~~~eAv~~aDvV~~-----L~PD~~q~ 74 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD-GF--EVMSVAEAVKKADVVML-----LLPDEVQP 74 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT-T---ECCEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC-CC--eeccHHHHHhhCCEEEE-----eCChHHHH
Confidence 357889999987443333322223666664444 3245555431 12 12233223346898887 56788777
Q ss_pred HHH-HHHHHhhccCCCCcEEEEE
Q 030291 93 KLL-KKCREAIASNGERGKVLII 114 (180)
Q Consensus 93 ~~l-~~~~~~L~p~~~~G~~~~~ 114 (180)
+++ +++...|++ |..+.+
T Consensus 75 ~vy~~~I~p~l~~----G~~L~f 93 (165)
T PF07991_consen 75 EVYEEEIAPNLKP----GATLVF 93 (165)
T ss_dssp HHHHHHHHHHS-T----T-EEEE
T ss_pred HHHHHHHHhhCCC----CCEEEe
Confidence 777 889999999 555554
No 437
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=49.88 E-value=36 Score=20.41 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeecC
Q 030291 148 TEQEWGSLFVNAGFTHYKIAPIF 170 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~~~ 170 (180)
....+.+.|++.||+++.+....
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc
Confidence 45789999999999999887654
No 438
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=49.79 E-value=1.1e+02 Score=23.21 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=45.3
Q ss_pred CCeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch--hhc-cCCC----CCCeeEEec---CCcccCCCccEEEecccc
Q 030291 16 LRSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH--AVT-DMPQ----TDNLKYIEG---DMFQFIPPSDAFFFKTVF 83 (180)
Q Consensus 16 ~~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~--~~~-~a~~----~~~~~~~~~---d~~~~~~~~D~v~~~~~l 83 (180)
..+|+=||+|. | .++..|.+. +..++.+.-+. .+. .... ..+..+... +..+..+.+|+|+..---
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 45788899887 4 455556655 44565555422 211 1100 111111111 111123469988874322
Q ss_pred ccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 84 HFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 84 ~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+. ..++++.+...+++ ++.++..
T Consensus 83 ~~-----~~~~~~~l~~~~~~---~~~iv~l 105 (313)
T PRK06249 83 TA-----NALLAPLIPQVAAP---DAKVLLL 105 (313)
T ss_pred CC-----hHhHHHHHhhhcCC---CCEEEEe
Confidence 21 12668888888988 6766554
No 439
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=49.72 E-value=39 Score=27.74 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=18.7
Q ss_pred CCCeEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeC
Q 030291 15 GLRSMVDVGGGT-GA-FARIISEAFPGIKCTVLDL 47 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~ 47 (180)
...+||-||||. |- +..-|+... --+++.+|+
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~g-f~~IhiIDl 44 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTG-FEEIHIIDL 44 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhc-CCeeEEEec
Confidence 467899999986 54 333333331 234666664
No 440
>PRK07574 formate dehydrogenase; Provisional
Probab=49.57 E-value=1e+02 Score=24.53 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=43.8
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+++|.=||.|. |......++.+ +.++++.|... ..+..+ ..++++ ..+..+-.+..|+|+....+. ++..
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr~~~~~~~~~-~~g~~~-~~~l~ell~~aDvV~l~lPlt----~~T~ 263 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDRHRLPEEVEQ-ELGLTY-HVSFDSLVSVCDVVTIHCPLH----PETE 263 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCCCCchhhHh-hcCcee-cCCHHHHhhcCCEEEEcCCCC----HHHH
Confidence 356788888876 65444444444 77899999743 111111 112222 223323456789988855442 1112
Q ss_pred HHH-HHHHHhhcc
Q 030291 93 KLL-KKCREAIAS 104 (180)
Q Consensus 93 ~~l-~~~~~~L~p 104 (180)
.++ ++..+.+|+
T Consensus 264 ~li~~~~l~~mk~ 276 (385)
T PRK07574 264 HLFDADVLSRMKR 276 (385)
T ss_pred HHhCHHHHhcCCC
Confidence 333 446667777
No 441
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=49.41 E-value=1e+02 Score=23.33 Aligned_cols=79 Identities=16% Similarity=0.326 Sum_probs=41.7
Q ss_pred eEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCC-------------CeeEEecCCcccCCCccEEEecc
Q 030291 18 SMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTD-------------NLKYIEGDMFQFIPPSDAFFFKT 81 (180)
Q Consensus 18 ~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~-------------~~~~~~~d~~~~~~~~D~v~~~~ 81 (180)
+|.=||+|. | .++..+++. +..++.+|.+. ..+..++.. ++.. ..+..+.....|+|+..-
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEALADADLILVAV 79 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHHhCCCEEEEeC
Confidence 466677765 3 344444444 45678888743 433332210 1211 122211233678887733
Q ss_pred ccccCChHHHHHHHHHHHHhhcc
Q 030291 82 VFHFFDDEDCLKLLKKCREAIAS 104 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p 104 (180)
++.....+++.+...+++
T Consensus 80 -----~~~~~~~v~~~l~~~~~~ 97 (325)
T PRK00094 80 -----PSQALREVLKQLKPLLPP 97 (325)
T ss_pred -----CHHHHHHHHHHHHhhcCC
Confidence 334455778888888887
No 442
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=49.02 E-value=30 Score=23.02 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=19.3
Q ss_pred cccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 145 KERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
+.....+++++|+++||+.++.+-.+|
T Consensus 17 nki~MaeLr~~l~~~Gf~~V~Tyi~SG 43 (137)
T PF08002_consen 17 NKIKMAELREALEDLGFTNVRTYIQSG 43 (137)
T ss_dssp S---HHHHHHHHHHCT-EEEEEETTTT
T ss_pred CcccHHHHHHHHHHcCCCCceEEEeeC
Confidence 446789999999999999998765544
No 443
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=48.93 E-value=1.2e+02 Score=23.09 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=53.1
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEec---CCcc---cCCCccEEEeccccc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEG---DMFQ---FIPPSDAFFFKTVFH 84 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~---d~~~---~~~~~D~v~~~~~l~ 84 (180)
...+++||=.|+|. |..+..+++.. +.+++.++.++ ..+.+++..--.++.. +... ....+|+++...
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~--- 236 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATA--- 236 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECC---
Confidence 45677888888544 56666666765 66788887743 4444433211111111 1100 123478887521
Q ss_pred cCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 85 FFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 85 ~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
... ..+....+.|++ +|.++.....
T Consensus 237 --g~~---~~~~~~~~~l~~---~G~~v~~g~~ 261 (333)
T cd08296 237 --PNA---KAISALVGGLAP---RGKLLILGAA 261 (333)
T ss_pred --Cch---HHHHHHHHHccc---CCEEEEEecC
Confidence 111 457778889999 8988876543
No 444
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=48.81 E-value=42 Score=25.39 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=45.0
Q ss_pred EEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcc---cCCCccEEEeccccccCChHHHH
Q 030291 19 MVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQ---FIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 19 iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~---~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
|-=||+|. | .++..+++. +.++++.|.+. ..+.+.+.. ... ..+..+ .....|+|++. +++....
T Consensus 3 Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-~~~-~~s~~~~~~~~~~~dvIi~~-----vp~~~~~ 73 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-TTG-VANLRELSQRLSAPRVVWVM-----VPHGIVD 73 (298)
T ss_pred EEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-Ccc-cCCHHHHHhhcCCCCEEEEE-----cCchHHH
Confidence 45567665 2 244444444 56788888843 444443321 111 112211 22357888773 3444555
Q ss_pred HHHHHHHHhhccCCCCcEEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.+++++...+++ |.+++.
T Consensus 74 ~v~~~l~~~l~~----g~ivid 91 (298)
T TIGR00872 74 AVLEELAPTLEK----GDIVID 91 (298)
T ss_pred HHHHHHHhhCCC----CCEEEE
Confidence 778888889988 565553
No 445
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=48.71 E-value=1.2e+02 Score=24.38 Aligned_cols=30 Identities=7% Similarity=0.182 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCc
Q 030291 91 CLKLLKKCREAIASNGERGKVLIIDIVIDEKEDD 124 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~ 124 (180)
.....+.+...|++ |-+++.+...+....+
T Consensus 107 v~~aa~sIa~~L~k----G~LVIlEST~~PGTTe 136 (436)
T COG0677 107 VESAARSIAPVLKK----GDLVILESTTPPGTTE 136 (436)
T ss_pred HHHHHHHHHHhcCC----CCEEEEecCCCCCcHH
Confidence 33667788899998 7788877665544433
No 446
>PLN03139 formate dehydrogenase; Provisional
Probab=48.57 E-value=88 Score=24.91 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=41.6
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+++|.=||.|. |......+..+ +.++.+.|.+. ..+... ..++.+ ..++.+-.+..|+|++...+. ++..
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~af-G~~V~~~d~~~~~~~~~~-~~g~~~-~~~l~ell~~sDvV~l~lPlt----~~T~ 270 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPF-NCNLLYHDRLKMDPELEK-ETGAKF-EEDLDAMLPKCDVVVINTPLT----EKTR 270 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-CCEEEEECCCCcchhhHh-hcCcee-cCCHHHHHhhCCEEEEeCCCC----HHHH
Confidence 456777777665 43333333334 77899998643 111111 112222 123323345789988854332 1112
Q ss_pred HHH-HHHHHhhcc
Q 030291 93 KLL-KKCREAIAS 104 (180)
Q Consensus 93 ~~l-~~~~~~L~p 104 (180)
.++ ++..+.+|+
T Consensus 271 ~li~~~~l~~mk~ 283 (386)
T PLN03139 271 GMFNKERIAKMKK 283 (386)
T ss_pred HHhCHHHHhhCCC
Confidence 223 456677787
No 447
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=48.05 E-value=21 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=23.6
Q ss_pred cCCCccEEEeccccc-cC-ChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 70 FIPPSDAFFFKTVFH-FF-DDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 70 ~~~~~D~v~~~~~l~-~~-~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+..||+||...+=. .+ ........++.+++..+. ||.+++..
T Consensus 64 ~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~---GGgLlmig 108 (177)
T PF07090_consen 64 ELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRD---GGGLLMIG 108 (177)
T ss_dssp HHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHT---T-EEEEE-
T ss_pred HHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHh---CCEEEEEe
Confidence 456799999865422 11 000012557888888888 88888865
No 448
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=47.84 E-value=82 Score=24.83 Aligned_cols=73 Identities=15% Similarity=0.268 Sum_probs=40.4
Q ss_pred CCCeEEEeC-Ccc--cHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 15 GLRSMVDVG-GGT--GAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 15 ~~~~iLdiG-~G~--G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
...+|.=|| .|. |.++..+.+. +..++++|.+.. .+..+.....|+|+..- |....
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------~~~~~~~~~aDlVilav-----P~~~~ 155 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------DRAEDILADAGMVIVSV-----PIHLT 155 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------hhHHHHHhcCCEEEEeC-----cHHHH
Confidence 446788887 444 3344455554 456888875320 01111234578877733 44444
Q ss_pred HHHHHHHHHhhccCCCCcEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
..+++++.. ++| |.+++
T Consensus 156 ~~~~~~l~~-l~~----~~iv~ 172 (374)
T PRK11199 156 EEVIARLPP-LPE----DCILV 172 (374)
T ss_pred HHHHHHHhC-CCC----CcEEE
Confidence 567777777 766 55555
No 449
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.65 E-value=1.3e+02 Score=23.12 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=53.6
Q ss_pred EEEeCCcc-cHHHHH-HHHHCCCCeEEEeeCch--hhccCC------C-C--CCeeEEecCCcccCCCccEEEecccccc
Q 030291 19 MVDVGGGT-GAFARI-ISEAFPGIKCTVLDLPH--AVTDMP------Q-T--DNLKYIEGDMFQFIPPSDAFFFKTVFHF 85 (180)
Q Consensus 19 iLdiG~G~-G~~~~~-l~~~~~~~~~~~~D~~~--~~~~a~------~-~--~~~~~~~~d~~~~~~~~D~v~~~~~l~~ 85 (180)
|-=||+|. |..... ++...-...+..+|..+ ....+. . . .++....+|+ +.....|+|+.....-.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 44578876 554433 33332223688999732 111111 1 1 2456666665 56778998887554422
Q ss_pred CCh---------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 86 FDD---------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 86 ~~~---------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
-+. ..-.++++++...++.++++|.+++..
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 221 122366777777777666678877754
No 450
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=47.45 E-value=1.3e+02 Score=23.20 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=36.6
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCchhhccCCC----------CCCeeEEe-cCCcccCCCccEEEecc
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPHAVTDMPQ----------TDNLKYIE-GDMFQFIPPSDAFFFKT 81 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~----------~~~~~~~~-~d~~~~~~~~D~v~~~~ 81 (180)
..+|.=||+|. |......+.......+..+|.++....++. ....++.. .|+ +.....|+|+...
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 35799999988 443333333322247999998442122211 12344443 555 5566799988744
No 451
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.33 E-value=1.4e+02 Score=24.31 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=68.7
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecC-CcccCCCccEEEeccccccCChHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGD-MFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..++|+=+|+|. |.....++... +..+++.|... ..........+.+..+. ..+....+|+|+.+-.+.. .++
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~-~~p-- 89 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSEL-GCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRP-DSP-- 89 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHC-CCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCC-CCH--
Confidence 346789999776 44333333333 66899999632 22111122355555542 2123457899888766542 222
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeEE
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTHY 164 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 164 (180)
.+.+++ + .|.-++.+.-....... .............++.+++..+..-+..+|+.+|+...
T Consensus 90 --~~~~a~---~----~gi~v~~~~el~~~~~~--~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (473)
T PRK00141 90 --LLVDAQ---S----QGLEVIGDVELAWRLDQ--AGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQ 151 (473)
T ss_pred --HHHHHH---H----CCCceeeHHHHHHHhhh--hhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEE
Confidence 233332 2 24444433211000000 00000011234556677888888888999999998754
No 452
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=46.89 E-value=64 Score=24.41 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe-cCCcccCCCccEEEecc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE-GDMFQFIPPSDAFFFKT 81 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~-~d~~~~~~~~D~v~~~~ 81 (180)
.+++++=+|.|. |......+..+ +++++..+.+. ....+... ...... .+..+....+|+|+..-
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~~~~~~~~~~-g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSSADLARITEM-GLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHC-CCeeecHHHHHHHhccCCEEEECC
Confidence 357899999876 44333333444 56888888743 33332221 111111 12212345799999854
No 453
>PLN02712 arogenate dehydrogenase
Probab=46.85 E-value=1.1e+02 Score=26.27 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=44.4
Q ss_pred CCeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC-CCccEEEeccccccCChHHHH
Q 030291 16 LRSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI-PPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 16 ~~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~~~~~~~ 92 (180)
..+|.=||+|. +.++..+.+. +.+++++|.+.....+++. ++.. ..|..+.. ...|+|+.. ++.....
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~A~~~-Gv~~-~~d~~e~~~~~aDvViLa-----vP~~~~~ 122 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHSLAARSL-GVSF-FLDPHDLCERHPDVILLC-----TSIISTE 122 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHc-CCEE-eCCHHHHhhcCCCEEEEc-----CCHHHHH
Confidence 35788899875 3455555544 5678888875422333322 2322 22332212 347988873 4444555
Q ss_pred HHHHHHH-Hhhcc
Q 030291 93 KLLKKCR-EAIAS 104 (180)
Q Consensus 93 ~~l~~~~-~~L~p 104 (180)
.+++++. ..+++
T Consensus 123 ~vl~~l~~~~l~~ 135 (667)
T PLN02712 123 NVLKSLPLQRLKR 135 (667)
T ss_pred HHHHhhhhhcCCC
Confidence 6777775 55777
No 454
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=46.85 E-value=29 Score=26.93 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=39.5
Q ss_pred CeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhc-cCCC----------------CCCeeEEecCCcccCCCccE
Q 030291 17 RSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVT-DMPQ----------------TDNLKYIEGDMFQFIPPSDA 76 (180)
Q Consensus 17 ~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~-~a~~----------------~~~~~~~~~d~~~~~~~~D~ 76 (180)
.+|..||+|- |.....++...|..+++.+|++. .+. +... .++--|.-.|+.......|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 3678888885 55556677788999999999854 332 2221 23333444555334446888
Q ss_pred EEec
Q 030291 77 FFFK 80 (180)
Q Consensus 77 v~~~ 80 (180)
|+.+
T Consensus 82 vfis 85 (481)
T KOG2666|consen 82 VFIS 85 (481)
T ss_pred EEEE
Confidence 7763
No 455
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=46.69 E-value=1.2e+02 Score=22.71 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=53.4
Q ss_pred ccCCCeEEEeCC--cccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe---cCCcc-----cCCCccEEEecc
Q 030291 13 FQGLRSMVDVGG--GTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE---GDMFQ-----FIPPSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~--G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~---~d~~~-----~~~~~D~v~~~~ 81 (180)
..++++||=.|+ +.|..+..+++.. ++++++++.++ ..+.+++..--.++. .+..+ ....+|+|+-..
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECC
Confidence 456788887773 4577777778776 77888877643 444444321111111 11111 012488877522
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.. ..+....+.|++ +|.++....
T Consensus 220 -----g~----~~~~~~~~~l~~---~G~iv~~g~ 242 (329)
T cd08294 220 -----GG----EFSSTVLSHMND---FGRVAVCGS 242 (329)
T ss_pred -----CH----HHHHHHHHhhcc---CCEEEEEcc
Confidence 22 347788899999 899887653
No 456
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=46.64 E-value=10 Score=26.00 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLP 48 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~ 48 (180)
++.+|+=+|.|. |.-+..++... +++++..|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCC
Confidence 457899999888 67777777777 7889999973
No 457
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=46.56 E-value=32 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred cccCHHHHHHHHHHcCCeEEEEeecCC
Q 030291 145 KERTEQEWGSLFVNAGFTHYKIAPIFG 171 (180)
Q Consensus 145 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 171 (180)
.-++.+++..+++++||++.+.+....
T Consensus 286 ~Kyt~~~~~~l~~~aG~~~~~~W~d~~ 312 (319)
T TIGR03439 286 GKYDKDEREKLCQSAGLKVVDVWTNED 312 (319)
T ss_pred eCCCHHHHHHHHHHCCCeeeEEEECCC
Confidence 457999999999999999999998865
No 458
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.27 E-value=91 Score=22.41 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=53.5
Q ss_pred cCCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
..+..+|=+|.= +|.+...++.. .++++.+|+.+ +-... .+++.|..+-. -..+.+|+|+-.-.+.-+.+..
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~l--p~~v~Fr~~~~-~~~G~~DlivDlTGlGG~~Pe~- 116 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFL--PNNVKFRNLLK-FIRGEVDLIVDLTGLGGIEPEF- 116 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcC--CCCccHhhhcC-CCCCceeEEEeccccCCCCHHH-
Confidence 456788888854 57777777766 67899999955 43333 34566655522 1233699999876666444432
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 92 LKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.+-++| +.+++-++
T Consensus 117 -------L~~fnp----~vfiVEdP 130 (254)
T COG4017 117 -------LAKFNP----KVFIVEDP 130 (254)
T ss_pred -------HhccCC----ceEEEECC
Confidence 234566 66666544
No 459
>PRK07680 late competence protein ComER; Validated
Probab=45.35 E-value=96 Score=23.04 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=43.0
Q ss_pred EEEeCCcc-c-HHHHHHHHHC--CCCeEEEeeCch-hhccCCC-CCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 19 MVDVGGGT-G-AFARIISEAF--PGIKCTVLDLPH-AVTDMPQ-TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 19 iLdiG~G~-G-~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~-~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
|.=||||. | .++..|.+.. +...+++.|.+. ..+...+ ..++.. ..+..+.....|+|+.. +++....
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~aDiVila-----v~p~~~~ 76 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHV-AKTIEEVISQSDLIFIC-----VKPLDIY 76 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEE-ECCHHHHHHhCCEEEEe-----cCHHHHH
Confidence 55577766 2 3444454442 113577777743 3333222 223433 22332223468988763 3555566
Q ss_pred HHHHHHHHhhcc
Q 030291 93 KLLKKCREAIAS 104 (180)
Q Consensus 93 ~~l~~~~~~L~p 104 (180)
++++.+...+++
T Consensus 77 ~vl~~l~~~l~~ 88 (273)
T PRK07680 77 PLLQKLAPHLTD 88 (273)
T ss_pred HHHHHHHhhcCC
Confidence 788888888887
No 460
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=45.15 E-value=1e+02 Score=25.39 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=48.3
Q ss_pred cCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 14 QGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 14 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
-.+++++=+|+|. |......+..+ ++++++.|... ....+.. ..+++ .++.+.....|+|+..-. ..
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~-Ga~ViV~e~dp~~a~~A~~-~G~~~--~~leell~~ADIVI~atG-----t~-- 320 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGF-GARVVVTEIDPICALQAAM-EGYQV--VTLEDVVETADIFVTATG-----NK-- 320 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHh-cCcee--ccHHHHHhcCCEEEECCC-----cc--
Confidence 3577899999987 54444444444 77898987633 2212221 12222 233223457999887422 11
Q ss_pred HHHH-HHHHHhhccCCCCcEEEEE
Q 030291 92 LKLL-KKCREAIASNGERGKVLII 114 (180)
Q Consensus 92 ~~~l-~~~~~~L~p~~~~G~~~~~ 114 (180)
.++ .+..+.+|| |+.++-+
T Consensus 321 -~iI~~e~~~~MKp---GAiLINv 340 (476)
T PTZ00075 321 -DIITLEHMRRMKN---NAIVGNI 340 (476)
T ss_pred -cccCHHHHhccCC---CcEEEEc
Confidence 334 367778998 5555554
No 461
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=45.13 E-value=85 Score=24.41 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCc-h-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHH
Q 030291 15 GLRSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLP-H-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 15 ~~~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~-~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
.+.+|-=||+|. | ..+..|... +..+++.+.+ . ....+++ ..+. ..+..+.....|+|+. .+++..
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~-~G~~--~~s~~eaa~~ADVVvL-----aVPd~~ 85 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA-DGFE--VLTVAEAAKWADVIMI-----LLPDEV 85 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH-CCCe--eCCHHHHHhcCCEEEE-----cCCHHH
Confidence 356788888887 2 233444433 5567665542 2 3233322 1222 2244333456899888 556665
Q ss_pred HHHHH-HHHHHhhcc
Q 030291 91 CLKLL-KKCREAIAS 104 (180)
Q Consensus 91 ~~~~l-~~~~~~L~p 104 (180)
...++ +++...+++
T Consensus 86 ~~~V~~~~I~~~Lk~ 100 (330)
T PRK05479 86 QAEVYEEEIEPNLKE 100 (330)
T ss_pred HHHHHHHHHHhcCCC
Confidence 56777 778889998
No 462
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=44.87 E-value=18 Score=29.64 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=62.7
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCC-eEEEeeCch-hhccCCC-------CCCeeEEecCCcc----c---CCCccE
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGI-KCTVLDLPH-AVTDMPQ-------TDNLKYIEGDMFQ----F---IPPSDA 76 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a~~-------~~~~~~~~~d~~~----~---~~~~D~ 76 (180)
..++-+|||.=|++|.-+.+.++..++. .+++.|.+. .+...++ ...++....|... . ...||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 3466789999999999999999998774 567888855 5554443 1223334444421 1 125888
Q ss_pred EEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 77 FFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 77 v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
|=. .-+..+. .+|....+.++. ||.+.++.+
T Consensus 187 IDL----DPyGs~s--~FLDsAvqav~~---gGLL~vT~T 217 (525)
T KOG1253|consen 187 IDL----DPYGSPS--PFLDSAVQAVRD---GGLLCVTCT 217 (525)
T ss_pred Eec----CCCCCcc--HHHHHHHHHhhc---CCEEEEEec
Confidence 754 2223333 789999999998 777777654
No 463
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.73 E-value=1.1e+02 Score=22.94 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=44.9
Q ss_pred eEEEeCCcc-c-HHHHHHHHHC--CCCeEEEeeCch--hhccCCC-CCCeeEEecCCcccCCCccEEEeccccccCChHH
Q 030291 18 SMVDVGGGT-G-AFARIISEAF--PGIKCTVLDLPH--AVTDMPQ-TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDED 90 (180)
Q Consensus 18 ~iLdiG~G~-G-~~~~~l~~~~--~~~~~~~~D~~~--~~~~a~~-~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~ 90 (180)
+|.=||||. | .++..+.+.. +..++.+++.+. ....... ...+. ...|..+.....|+|+. .++...
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~-~~~~~~e~~~~aDvVil-----avpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVE-LADNEAEIFTKCDHSFI-----CVPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeE-EeCCHHHHHhhCCEEEE-----ecCHHH
Confidence 455678776 3 3444555442 124577777532 2222211 11222 12333222346898876 334455
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEE
Q 030291 91 CLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 91 ~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
..++++++...+++ +.++++
T Consensus 77 ~~~vl~~l~~~l~~----~~~ivS 96 (277)
T PRK06928 77 VLPLLKDCAPVLTP----DRHVVS 96 (277)
T ss_pred HHHHHHHHHhhcCC----CCEEEE
Confidence 55778888888877 555554
No 464
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=44.48 E-value=23 Score=27.77 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=61.0
Q ss_pred ccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC---------------CCCeeEEecCCccc-CC---
Q 030291 13 FQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ---------------TDNLKYIEGDMFQF-IP--- 72 (180)
Q Consensus 13 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~---------------~~~~~~~~~d~~~~-~~--- 72 (180)
.++++-|+|-=.|||.+...-+.. ++-++|.|+.- ++...+. ..-..++.+|+..+ +-
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred cCCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 467889999999999887766665 77799999966 4432321 12234555666331 11
Q ss_pred CccEEEec------------------------cccccCCh-------HHHHHHHHHHHHhhccCCCCcEEEEEEe
Q 030291 73 PSDAFFFK------------------------TVFHFFDD-------EDCLKLLKKCREAIASNGERGKVLIIDI 116 (180)
Q Consensus 73 ~~D~v~~~------------------------~~l~~~~~-------~~~~~~l~~~~~~L~p~~~~G~~~~~~~ 116 (180)
.||.|+|- ..-.|.|. .-.-.+|.-.++.|.. ||++++--+
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~---ggrlv~w~p 355 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVD---GGRLVFWLP 355 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhc---CceEEEecC
Confidence 48888873 11122222 1122456667788988 888887433
No 465
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=44.41 E-value=1.4e+02 Score=22.85 Aligned_cols=93 Identities=11% Similarity=0.151 Sum_probs=54.4
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEe-cC-----Ccc------cCCCcc---
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIE-GD-----MFQ------FIPPSD--- 75 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~-~d-----~~~------~~~~~D--- 75 (180)
.+++.+|+=.|+|. |..+..+++.. +.+++++|.++ .++.+++..--.++. .+ +.+ ....+|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 56678999999866 67777777776 66788888744 555554421111111 11 100 001244
Q ss_pred -EEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 76 -AFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 76 -~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
+|+- ..... ..+....+.|++ +|.+++....
T Consensus 243 d~v~d-----~~g~~---~~~~~~~~~l~~---~G~iv~~G~~ 274 (349)
T TIGR03201 243 WKIFE-----CSGSK---PGQESALSLLSH---GGTLVVVGYT 274 (349)
T ss_pred CEEEE-----CCCCh---HHHHHHHHHHhc---CCeEEEECcC
Confidence 4442 22222 456777889999 8999987654
No 466
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.09 E-value=1.2e+02 Score=22.67 Aligned_cols=88 Identities=13% Similarity=0.179 Sum_probs=48.6
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCC------------------------CCCeeEEecCCcc
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQ------------------------TDNLKYIEGDMFQ 69 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~------------------------~~~~~~~~~d~~~ 69 (180)
.+|.=||+|. | .++..++.. +..++.+|.+. .++.+++ ..++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 4677788876 2 233334443 66799999843 4444431 012322 233322
Q ss_pred cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 70 FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 70 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
.....|+|+..-. +. .+....+++++.+.+++ +.++..
T Consensus 81 a~~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~----~~ii~s 118 (287)
T PRK08293 81 AVKDADLVIEAVP-ED--PEIKGDFYEELAKVAPE----KTIFAT 118 (287)
T ss_pred HhcCCCEEEEecc-CC--HHHHHHHHHHHHhhCCC----CCEEEE
Confidence 3456888877432 11 12345778899888877 555544
No 467
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=43.74 E-value=1.6e+02 Score=23.21 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=65.9
Q ss_pred ccCCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeC-chhhccCCCCCCeeEEecC----Ccc----cCC-CccEEEecc
Q 030291 13 FQGLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDL-PHAVTDMPQTDNLKYIEGD----MFQ----FIP-PSDAFFFKT 81 (180)
Q Consensus 13 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~d----~~~----~~~-~~D~v~~~~ 81 (180)
.+++.++.=+|||. |..+..-+....-.+++++|+ ++.++.|++..-..+++.. +.+ -.+ ..|.++
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~--- 259 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAF--- 259 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEE---
Confidence 57788999999887 777766666665668999999 4588888885555555442 211 112 466653
Q ss_pred ccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 82 VFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 82 ~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
+...+. ..++....++.+ +|..++.....+..
T Consensus 260 --e~~G~~---~~~~~al~~~~~---~G~~v~iGv~~~~~ 291 (366)
T COG1062 260 --ECVGNV---EVMRQALEATHR---GGTSVIIGVAGAGQ 291 (366)
T ss_pred --EccCCH---HHHHHHHHHHhc---CCeEEEEecCCCCc
Confidence 233333 468888888888 89999887654443
No 468
>PRK03094 hypothetical protein; Provisional
Probab=43.68 E-value=29 Score=20.81 Aligned_cols=21 Identities=5% Similarity=0.161 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHcCCeEEEEee
Q 030291 148 TEQEWGSLFVNAGFTHYKIAP 168 (180)
Q Consensus 148 ~~~~~~~~l~~aGf~~~~~~~ 168 (180)
....+.+.|++.||+++.+..
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCc
Confidence 457899999999999998865
No 469
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=43.15 E-value=89 Score=24.69 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCch-hhccCCC--------CCCeeEEecCCcccC--------------
Q 030291 15 GLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------TDNLKYIEGDMFQFI-------------- 71 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------~~~~~~~~~d~~~~~-------------- 71 (180)
+..+.+|.+|+.+.....+.+.++..+--|++... .+..... .....+..+|.....
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 45789999999999999999988666666666532 2222221 122233333332100
Q ss_pred ------------------CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCC
Q 030291 72 ------------------PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKED 123 (180)
Q Consensus 72 ------------------~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~ 123 (180)
..+|. ..+..|+++.. .+.......+++ +|.+++.+.....+..
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~--~~f~~~~~~~~~---~~~v~~~e~~~~~p~g 321 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKS--ALFRGRVATLKP---GGKVLILEYIRGLPEG 321 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeeccccc--HHHHhHhhccCc---CceEEehhhcCcCCcC
Confidence 01122 34555666555 668889999999 8999998876555443
No 470
>PLN00203 glutamyl-tRNA reductase
Probab=43.07 E-value=1.8e+02 Score=24.31 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=47.4
Q ss_pred CCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCC-CCCC--eeEEec-CCcccCCCccEEEeccc-cccCCh
Q 030291 16 LRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMP-QTDN--LKYIEG-DMFQFIPPSDAFFFKTV-FHFFDD 88 (180)
Q Consensus 16 ~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-~~~~--~~~~~~-d~~~~~~~~D~v~~~~~-l~~~~~ 88 (180)
..+|+=||+|. |......+.......++.++.+. ...... ..+. +.+... +..+.....|+|++.-. -+.+-.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pvI~ 345 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPLFL 345 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCeeC
Confidence 67899999865 43333322233223588887743 322222 1112 222221 22123457999887532 222222
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCC
Q 030291 89 EDCLKLLKKCREAIASNGERGKVLIIDIVIDEK 121 (180)
Q Consensus 89 ~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~ 121 (180)
. +.++.+...-+. .+...++.|...|..
T Consensus 346 ~---e~l~~~~~~~~~--~~~~~~~IDLAvPRd 373 (519)
T PLN00203 346 K---EHVEALPPASDT--VGGKRLFVDISVPRN 373 (519)
T ss_pred H---HHHHHhhhcccc--cCCCeEEEEeCCCCC
Confidence 2 334444322111 023478888876643
No 471
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=42.84 E-value=1.4e+02 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.1
Q ss_pred CCCeEEEeCCcccHHHHHHHHHC
Q 030291 15 GLRSMVDVGGGTGAFARIISEAF 37 (180)
Q Consensus 15 ~~~~iLdiG~G~G~~~~~l~~~~ 37 (180)
..-.|+|+|-|+|.....+.+.+
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~ 80 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAI 80 (252)
T ss_pred cceeehhhhcccchhHHHHHhhh
Confidence 45678999999999887776554
No 472
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=42.84 E-value=1.4e+02 Score=22.48 Aligned_cols=88 Identities=11% Similarity=0.252 Sum_probs=48.9
Q ss_pred CeEEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCC--------------C------------CCeeEEecCC
Q 030291 17 RSMVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQ--------------T------------DNLKYIEGDM 67 (180)
Q Consensus 17 ~~iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~--------------~------------~~~~~~~~d~ 67 (180)
.+|.=||+|. | .++..++.. +..++.+|.++ .++.+++ . .++.+ ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH
Confidence 4677788886 3 344444444 56799999854 5543211 0 11111 1222
Q ss_pred cccCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 68 FQFIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 68 ~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+.....|+|+..-. . .......+++++.+.+++ +.++++.
T Consensus 81 -~~~~~aDlVieav~-e--~~~~k~~~~~~l~~~~~~----~~il~S~ 120 (291)
T PRK06035 81 -ESLSDADFIVEAVP-E--KLDLKRKVFAELERNVSP----ETIIASN 120 (291)
T ss_pred -HHhCCCCEEEEcCc-C--cHHHHHHHHHHHHhhCCC----CeEEEEc
Confidence 23346788776431 1 111245788899998888 6666644
No 473
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=42.21 E-value=1.6e+02 Score=22.79 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=45.6
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
.+.+|.=||+|. |......+..+ +.++++.|.+. .... ... ...+..+-....|+|+....+. .....
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~-G~~V~~~d~~~~~~~~-----~~~-~~~~l~ell~~aDiVil~lP~t---~~t~~ 214 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGF-GATITAYDAYPNKDLD-----FLT-YKDSVKEAIKDADIISLHVPAN---KESYH 214 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCChhHhhh-----hhh-ccCCHHHHHhcCCEEEEeCCCc---HHHHH
Confidence 345788888887 54333333344 77899999743 2111 111 1223322345788888744332 22223
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 030291 93 KLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+.++..+.+++ |.+++
T Consensus 215 li~~~~l~~mk~----gavlI 231 (330)
T PRK12480 215 LFDKAMFDHVKK----GAILV 231 (330)
T ss_pred HHhHHHHhcCCC----CcEEE
Confidence 456677788887 55444
No 474
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=42.16 E-value=37 Score=23.05 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=40.1
Q ss_pred EEEeCCcc-c-HHHHHHHHHCCCCeEEEeeCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCCh-HHHHHH
Q 030291 19 MVDVGGGT-G-AFARIISEAFPGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDD-EDCLKL 94 (180)
Q Consensus 19 iLdiG~G~-G-~~~~~l~~~~~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~-~~~~~~ 94 (180)
|-=||.|. | .++..|.+. +..+++.|.+. ..+...+. ..+. ..+..+-....|+|++. +++ .....+
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-g~~~-~~s~~e~~~~~dvvi~~-----v~~~~~v~~v 74 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-GAEV-ADSPAEAAEQADVVILC-----VPDDDAVEAV 74 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-TEEE-ESSHHHHHHHBSEEEE------SSSHHHHHHH
T ss_pred EEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-hhhh-hhhhhhHhhcccceEee-----cccchhhhhh
Confidence 33455544 2 233444444 67899999843 44444322 2222 22222222346888873 333 334466
Q ss_pred HHH--HHHhhccCCCCcEEEE
Q 030291 95 LKK--CREAIASNGERGKVLI 113 (180)
Q Consensus 95 l~~--~~~~L~p~~~~G~~~~ 113 (180)
+.. +...|++ |.+++
T Consensus 75 ~~~~~i~~~l~~----g~iii 91 (163)
T PF03446_consen 75 LFGENILAGLRP----GKIII 91 (163)
T ss_dssp HHCTTHGGGS-T----TEEEE
T ss_pred hhhhHHhhcccc----ceEEE
Confidence 777 7778877 66555
No 475
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.82 E-value=1.4e+02 Score=22.23 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=50.4
Q ss_pred eEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCch-hhccCC-----------CC------------CCeeEEecCCcccC
Q 030291 18 SMVDVGGGT--GAFARIISEAFPGIKCTVLDLPH-AVTDMP-----------QT------------DNLKYIEGDMFQFI 71 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~-~~~~a~-----------~~------------~~~~~~~~d~~~~~ 71 (180)
+|.=||+|. +.++..++.. +..++++|.+. .++.++ +. .++++ ..|. +..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~~ 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DDL 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HHh
Confidence 566778875 3455555555 55799999844 443221 11 13332 2333 334
Q ss_pred CCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEee
Q 030291 72 PPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIV 117 (180)
Q Consensus 72 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~ 117 (180)
...|+|+..-. .. ......+++++.+.+++ +.++.+...
T Consensus 81 ~~aDlVi~av~-e~--~~~k~~~~~~l~~~~~~----~~il~s~ts 119 (282)
T PRK05808 81 KDADLVIEAAT-EN--MDLKKKIFAQLDEIAKP----EAILATNTS 119 (282)
T ss_pred ccCCeeeeccc-cc--HHHHHHHHHHHHhhCCC----CcEEEECCC
Confidence 56888876321 11 12234889999999998 666655443
No 476
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=41.57 E-value=92 Score=22.53 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEEEEeee
Q 030291 71 IPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLIIDIVI 118 (180)
Q Consensus 71 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~ 118 (180)
....|+|+..--+++++ .+++++++.+ +|++++..+++
T Consensus 58 ~~~aDVVvLAVP~~a~~-----~v~~~l~~~~-----~~KIvID~tnp 95 (211)
T COG2085 58 AALADVVVLAVPFEAIP-----DVLAELRDAL-----GGKIVIDATNP 95 (211)
T ss_pred HhcCCEEEEeccHHHHH-----hHHHHHHHHh-----CCeEEEecCCC
Confidence 34689999865555443 6688888887 47888866654
No 477
>PLN02688 pyrroline-5-carboxylate reductase
Probab=41.50 E-value=1.2e+02 Score=22.28 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=46.2
Q ss_pred eEEEeCCcc--cHHHHHHHHHC--CCCeEEEe-eCch-hhccCCCCCCeeEEecCCcccCCCccEEEeccccccCChHHH
Q 030291 18 SMVDVGGGT--GAFARIISEAF--PGIKCTVL-DLPH-AVTDMPQTDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 18 ~iLdiG~G~--G~~~~~l~~~~--~~~~~~~~-D~~~-~~~~a~~~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~ 91 (180)
+|.=||||. +.++..|++.. +...+++. +.+. ..+.+.+ .++.. ..+..+.....|+|+..- ++...
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~-~~~~~e~~~~aDvVil~v-----~~~~~ 74 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKT-AASNTEVVKSSDVIILAV-----KPQVV 74 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEE-eCChHHHHhcCCEEEEEE-----CcHHH
Confidence 355577775 34555555542 12267777 6633 3333322 22332 222222233578887733 34445
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEE
Q 030291 92 LKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 92 ~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.+++..+...+++ |.++++.
T Consensus 75 ~~vl~~l~~~~~~----~~~iIs~ 94 (266)
T PLN02688 75 KDVLTELRPLLSK----DKLLVSV 94 (266)
T ss_pred HHHHHHHHhhcCC----CCEEEEe
Confidence 5778888888877 6666644
No 478
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=41.27 E-value=36 Score=18.31 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCeEEEE
Q 030291 150 QEWGSLFVNAGFTHYKI 166 (180)
Q Consensus 150 ~~~~~~l~~aGf~~~~~ 166 (180)
.++..+|++.||+..+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 57889999999998743
No 479
>PRK10637 cysG siroheme synthase; Provisional
Probab=40.81 E-value=2e+02 Score=23.44 Aligned_cols=64 Identities=23% Similarity=0.237 Sum_probs=40.0
Q ss_pred cCCCeEEEeCCcccHHH--HHHHHHCCCCeEEEee--CchhhccCCCCCCeeEEecCCcc-cCCCccEEEe
Q 030291 14 QGLRSMVDVGGGTGAFA--RIISEAFPGIKCTVLD--LPHAVTDMPQTDNLKYIEGDMFQ-FIPPSDAFFF 79 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~~~--~~l~~~~~~~~~~~~D--~~~~~~~a~~~~~~~~~~~d~~~-~~~~~D~v~~ 79 (180)
-.+.+||=||+|.=..- ..|++. +++++.+- +++-+.......++++...++.. .+..+++|++
T Consensus 10 l~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~ 78 (457)
T PRK10637 10 LRDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIA 78 (457)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEE
Confidence 35788999999884432 334444 66677664 33333333346788888887744 4556888776
No 480
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.48 E-value=1.7e+02 Score=22.50 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCC-CCeEEEeeCch--hhccCCC-------CCCeeEEe-cCCcccCCCccEEEeccc
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFP-GIKCTVLDLPH--AVTDMPQ-------TDNLKYIE-GDMFQFIPPSDAFFFKTV 82 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~~~~D~~~--~~~~a~~-------~~~~~~~~-~d~~~~~~~~D~v~~~~~ 82 (180)
+..+|.=||+|. |......+.... ...+..+|..+ ....+.. .....+.. .|+ +.....|+|+....
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG 80 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAG 80 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCC
Confidence 445788899866 443333333322 34688999743 2111111 11224443 555 45667999887433
Q ss_pred cccCChHH-------HHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 83 FHFFDDED-------CLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 83 l~~~~~~~-------~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.-.-+... -..+++++.+.++.++++|.+++..
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 22222211 1234555555554444478888765
No 481
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=40.18 E-value=1.1e+02 Score=23.97 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=33.4
Q ss_pred EEEeCCcc-cHHHHHHHHHCCCC-eEEEeeCch-hhccC-C--CCCCeeEEecCCccc------CCCccEEEec
Q 030291 19 MVDVGGGT-GAFARIISEAFPGI-KCTVLDLPH-AVTDM-P--QTDNLKYIEGDMFQF------IPPSDAFFFK 80 (180)
Q Consensus 19 iLdiG~G~-G~~~~~l~~~~~~~-~~~~~D~~~-~~~~a-~--~~~~~~~~~~d~~~~------~~~~D~v~~~ 80 (180)
|+=+|+|. |......+...+.. +++..|.+. .++.. . ...++++...|+.+. ....|+|+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 45677733 43333333333333 889999844 33333 2 367899999998652 2368998864
No 482
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.06 E-value=2e+02 Score=23.18 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=69.2
Q ss_pred ccCCCeEEEeCCc-ccHHHHHHHHHCCCCeEEEeeCch---hhccCCCC-CCeeEEecCC-cccCCCccEEEeccccccC
Q 030291 13 FQGLRSMVDVGGG-TGAFARIISEAFPGIKCTVLDLPH---AVTDMPQT-DNLKYIEGDM-FQFIPPSDAFFFKTVFHFF 86 (180)
Q Consensus 13 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~~~~D~~~---~~~~a~~~-~~~~~~~~d~-~~~~~~~D~v~~~~~l~~~ 86 (180)
+.....|+=+|.| +|.....++... +..+++.|... .....++. .++.+..+.. .+....+|+|+.+-.+..
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~- 80 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQ-GIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLAL- 80 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhC-CCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCC-
Confidence 4566778888866 565544444443 77899999732 21222211 3566655422 123456898888765532
Q ss_pred ChHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 87 DDEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 87 ~~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
.++ .+.++++ . |.-++.+.-. +.... .......++.+++..|..-+..+|+++|.+.
T Consensus 81 ~~p----~~~~a~~---~----~i~i~~~~el--------~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 137 (448)
T PRK03803 81 DTP----ALRAAAA---M----GIEVIGDIEL--------FAREA-KAPVIAITGSNGKSTVTTLVGEMAKAAGKRV 137 (448)
T ss_pred CCH----HHHHHHH---C----CCcEEEHHHH--------HHHhc-CCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 122 2333332 2 4434433210 00110 1123344567778888888888888888753
No 483
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=39.48 E-value=15 Score=26.78 Aligned_cols=45 Identities=22% Similarity=0.147 Sum_probs=35.6
Q ss_pred cccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEEEeeCc
Q 030291 2 ATLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCTVLDLP 48 (180)
Q Consensus 2 ~~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~ 48 (180)
+.+.+..+. .-++++.+|.--|.|..++.+++..+..+.+++|-.
T Consensus 32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrD 76 (303)
T KOG2782|consen 32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRD 76 (303)
T ss_pred hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccC
Confidence 344455554 456788999999999999999999999888888863
No 484
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=39.27 E-value=32 Score=29.42 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=30.1
Q ss_pred ccccccccccccCCCeEEEeCCcccHHHHHHHHHCCCCeEE
Q 030291 3 TLLVKDCRPIFQGLRSMVDVGGGTGAFARIISEAFPGIKCT 43 (180)
Q Consensus 3 ~~l~~~~~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~~ 43 (180)
+.|++.+. ++. +..|-.|=|+|..+..+++.+|.++++
T Consensus 313 RsIL~~~~--i~~-~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 313 RSILKNLN--IKY-RDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred HHHHHhcC--CCc-ceeEEEecCchHHHHHHHHhCccccee
Confidence 45666666 444 557999999999999999999988774
No 485
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=38.71 E-value=1.4e+02 Score=27.42 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCeEEEeCCcc-cHHHHHHHHHCCCCe-------------EEEeeCch-hhccCC-CCCCeeEEecCCccc------CC
Q 030291 15 GLRSMVDVGGGT-GAFARIISEAFPGIK-------------CTVLDLPH-AVTDMP-QTDNLKYIEGDMFQF------IP 72 (180)
Q Consensus 15 ~~~~iLdiG~G~-G~~~~~l~~~~~~~~-------------~~~~D~~~-~~~~a~-~~~~~~~~~~d~~~~------~~ 72 (180)
..++|+=||||- |......+...++.. ++..|... ..+.+. +.++++.+..|+.+. ..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 466899999985 655555554445544 77788743 333222 234666666665431 13
Q ss_pred CccEEEec
Q 030291 73 PSDAFFFK 80 (180)
Q Consensus 73 ~~D~v~~~ 80 (180)
..|+|++.
T Consensus 648 ~~DaVIsa 655 (1042)
T PLN02819 648 QVDVVISL 655 (1042)
T ss_pred CCCEEEEC
Confidence 58888874
No 486
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=38.65 E-value=98 Score=20.60 Aligned_cols=36 Identities=8% Similarity=0.169 Sum_probs=25.7
Q ss_pred cCCCccEEEeccccccCChHHHHHHHHHHHHhhccCCCCcEEEE
Q 030291 70 FIPPSDAFFFKTVFHFFDDEDCLKLLKKCREAIASNGERGKVLI 113 (180)
Q Consensus 70 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p~~~~G~~~~ 113 (180)
.+..|++|+...... +.+ +..+++.+..+. ||.++.
T Consensus 50 ~l~~y~~vi~P~~~~-~~~----~~~~~l~~~v~~---GG~li~ 85 (154)
T cd03143 50 DLSGYKLVVLPDLYL-LSD----ATAAALRAYVEN---GGTLVA 85 (154)
T ss_pred CcccCCEEEECchhc-CCH----HHHHHHHHHHHC---CCEEEE
Confidence 455799999987754 232 457888888888 775555
No 487
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=38.37 E-value=67 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=23.3
Q ss_pred CCCccEEEeccccc-cCChHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 71 IPPSDAFFFKTVFH-FFDDEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 71 ~~~~D~v~~~~~l~-~~~~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
+..||+|+...... .++++. .+.+.+.++. ||.++..-
T Consensus 50 L~~~Dvvv~~~~~~~~l~~~~----~~al~~~v~~---Ggglv~lH 88 (217)
T PF06283_consen 50 LKGYDVVVFYNTGGDELTDEQ----RAALRDYVEN---GGGLVGLH 88 (217)
T ss_dssp HCT-SEEEEE-SSCCGS-HHH----HHHHHHHHHT---T-EEEEEG
T ss_pred hcCCCEEEEECCCCCcCCHHH----HHHHHHHHHc---CCCEEEEc
Confidence 45799999877763 344443 6677777777 77777765
No 488
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.34 E-value=2.1e+02 Score=22.96 Aligned_cols=125 Identities=17% Similarity=0.250 Sum_probs=66.7
Q ss_pred CCeEEEeCCcccHH--HHHHHHHCCCCeEEEeeCch--hhcc-CCC--CCCeeEEecCCccc-CCCccEEEeccccccCC
Q 030291 16 LRSMVDVGGGTGAF--ARIISEAFPGIKCTVLDLPH--AVTD-MPQ--TDNLKYIEGDMFQF-IPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 16 ~~~iLdiG~G~G~~--~~~l~~~~~~~~~~~~D~~~--~~~~-a~~--~~~~~~~~~d~~~~-~~~~D~v~~~~~l~~~~ 87 (180)
.++++=+|+|.... +..|++. +..++++|... .+.. ..+ ..++++...+..+. ...+|+|+.+.... ..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~-~~ 81 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVP-LD 81 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCC-CC
Confidence 56788888777322 2223333 77899999842 2211 111 23566777776442 34699888865543 12
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCeE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFTH 163 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 163 (180)
++ .+..+++ .|..++...-. ...... ......++.+++..+.+-+..+|+..|...
T Consensus 82 ~~----~~~~a~~-------~~i~~~~~~~~--------~~~~~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~ 137 (450)
T PRK14106 82 SP----PVVQAHK-------KGIEVIGEVEL--------AYRFSK-APIVAITGTNGKTTTTTLLGEIFKNAGRKT 137 (450)
T ss_pred CH----HHHHHHH-------CCCcEEeHHHH--------HHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence 22 2333332 25445532110 001111 223445566778788888888888888643
No 489
>PLN02256 arogenate dehydrogenase
Probab=38.24 E-value=1.6e+02 Score=22.53 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=42.5
Q ss_pred CCCeEEEeCCcc--cHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCcccC-CCccEEEeccccccCChHHH
Q 030291 15 GLRSMVDVGGGT--GAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQFI-PPSDAFFFKTVFHFFDDEDC 91 (180)
Q Consensus 15 ~~~~iLdiG~G~--G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~~-~~~D~v~~~~~l~~~~~~~~ 91 (180)
...+|.=||+|. |.++..+.+. +.+++++|.+...+.+.. .++.. ..+..+.. ...|+|+.. .+....
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~~~a~~-~gv~~-~~~~~e~~~~~aDvVila-----vp~~~~ 105 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYSDIAAE-LGVSF-FRDPDDFCEEHPDVVLLC-----TSILST 105 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHHHHHHH-cCCee-eCCHHHHhhCCCCEEEEe-----cCHHHH
Confidence 345787888765 3344444443 457888987542222222 12222 22221112 357888873 333444
Q ss_pred HHHHHHH-HHhhcc
Q 030291 92 LKLLKKC-REAIAS 104 (180)
Q Consensus 92 ~~~l~~~-~~~L~p 104 (180)
..+++++ ...+++
T Consensus 106 ~~vl~~l~~~~l~~ 119 (304)
T PLN02256 106 EAVLRSLPLQRLKR 119 (304)
T ss_pred HHHHHhhhhhccCC
Confidence 5677777 456777
No 490
>PRK09273 hypothetical protein; Provisional
Probab=37.72 E-value=28 Score=25.08 Aligned_cols=20 Identities=45% Similarity=0.860 Sum_probs=8.9
Q ss_pred CCcccHHHHHHHHHCCCCeE
Q 030291 23 GGGTGAFARIISEAFPGIKC 42 (180)
Q Consensus 23 G~G~G~~~~~l~~~~~~~~~ 42 (180)
+||||.-....+-.+|+.++
T Consensus 70 iCGTGiG~siAANK~pGIra 89 (211)
T PRK09273 70 GCGTGQGAMLALNSFPGVVC 89 (211)
T ss_pred EcCcHHHHHHHHhcCCCeEE
Confidence 34444444444444444333
No 491
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=37.45 E-value=72 Score=24.93 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=31.7
Q ss_pred cCCCeEEEeCCcccH----HHHHHHHHCCCCeEEEeeCch--hhccCC
Q 030291 14 QGLRSMVDVGGGTGA----FARIISEAFPGIKCTVLDLPH--AVTDMP 55 (180)
Q Consensus 14 ~~~~~iLdiG~G~G~----~~~~l~~~~~~~~~~~~D~~~--~~~~a~ 55 (180)
.+...++-.|.|||. .++.+.++.|+.+++++|..+ .+....
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~ 257 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGK 257 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCC
Confidence 345668888999885 578888999999999999843 444443
No 492
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=37.25 E-value=2.1e+02 Score=22.79 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=62.7
Q ss_pred EEeCC-cccHHHHHHHHHCCCCeEEEeeCch--hhcc---CCC-CCCeeEEecCCcccCCCccEEEeccccccCChHHHH
Q 030291 20 VDVGG-GTGAFARIISEAFPGIKCTVLDLPH--AVTD---MPQ-TDNLKYIEGDMFQFIPPSDAFFFKTVFHFFDDEDCL 92 (180)
Q Consensus 20 LdiG~-G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~---a~~-~~~~~~~~~d~~~~~~~~D~v~~~~~l~~~~~~~~~ 92 (180)
+=+|. |+|..+..++... +.++++.|... .... ..+ ..++++..+.-.+....+|+|+.+-.+.. .++.
T Consensus 3 ~~iG~G~~G~a~a~~l~~~-G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~-~~p~-- 78 (433)
T TIGR01087 3 LILGLGKTGRAVARFLHKK-GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPP-DHPL-- 78 (433)
T ss_pred EEEEeCHhHHHHHHHHHHC-CCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCC-CCHH--
Confidence 33443 4566444444443 77899999732 2211 111 23566655422234557999988777642 2232
Q ss_pred HHHHHHHHhhccCCCCcEEEEEEeeeCCCCCchhhhhhhhccceeeEeecCCcccCHHHHHHHHHHcCCe
Q 030291 93 KLLKKCREAIASNGERGKVLIIDIVIDEKEDDRELTESKLLFDIFMNFNVGGKERTEQEWGSLFVNAGFT 162 (180)
Q Consensus 93 ~~l~~~~~~L~p~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 162 (180)
+.++++ . |.-++.+.-. +.... .......++.+++..|..-+..+|+.+|..
T Consensus 79 --~~~a~~---~----~i~i~~~~e~--------~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g~~ 130 (433)
T TIGR01087 79 --VQAAAK---R----GIPVVGDIEL--------FLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAAGLK 130 (433)
T ss_pred --HHHHHH---C----CCcEEEHHHH--------HHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence 333332 2 4434433210 00111 112334456677777888888888888876
No 493
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=37.23 E-value=1.8e+02 Score=22.04 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=47.6
Q ss_pred eCCcc-cHHHHHHHHHCCC-CeEEEeeCch--hhccCCC------C-CCeeEE-ecCCcccCCCccEEEeccccccCCh-
Q 030291 22 VGGGT-GAFARIISEAFPG-IKCTVLDLPH--AVTDMPQ------T-DNLKYI-EGDMFQFIPPSDAFFFKTVFHFFDD- 88 (180)
Q Consensus 22 iG~G~-G~~~~~l~~~~~~-~~~~~~D~~~--~~~~a~~------~-~~~~~~-~~d~~~~~~~~D~v~~~~~l~~~~~- 88 (180)
||+|. |......+...+- ..++.+|..+ ....+.. . ....+. ..|+ +.....|+|+.....-.-+.
T Consensus 4 iGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~-~~l~~aDiVIitag~p~~~~~ 82 (300)
T cd00300 4 IGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDY-ADAADADIVVITAGAPRKPGE 82 (300)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCH-HHhCCCCEEEEcCCCCCCCCC
Confidence 67776 5444443333322 4689999833 2222221 1 222333 2443 46667999887554322111
Q ss_pred ------HHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 89 ------EDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 89 ------~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
.....+++++.+.++.++|+|.+++..
T Consensus 83 ~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 83 TRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 012245666666665544478888765
No 494
>PHA03297 envelope glycoprotein L; Provisional
Probab=37.19 E-value=10 Score=25.56 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=17.7
Q ss_pred cccccCCCeEEEeCCcccHHHH
Q 030291 10 RPIFQGLRSMVDVGGGTGAFAR 31 (180)
Q Consensus 10 ~~~~~~~~~iLdiG~G~G~~~~ 31 (180)
-|.-..+++|||-.||+|....
T Consensus 34 tw~~gepkrileascgsgpimk 55 (185)
T PHA03297 34 TWGPGEPKRILEASCGSGPIMK 55 (185)
T ss_pred eeCCCCchhhhhhccCCCcccc
Confidence 3446778999999999998764
No 495
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=36.86 E-value=2e+02 Score=22.28 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCeEEEeCC-cc-cHHHHHHHHHCCCC------eEEEeeCchhhccCCC------------CCCeeEEecCCcccCCCc
Q 030291 15 GLRSMVDVGG-GT-GAFARIISEAFPGI------KCTVLDLPHAVTDMPQ------------TDNLKYIEGDMFQFIPPS 74 (180)
Q Consensus 15 ~~~~iLdiG~-G~-G~~~~~l~~~~~~~------~~~~~D~~~~~~~a~~------------~~~~~~~~~d~~~~~~~~ 74 (180)
++-+|.=||+ |. |......+...+-+ ++..+|..+..+.++. ..++....+|+ +.....
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~-~~~~da 80 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPE-EAFKDV 80 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChH-HHhCCC
Confidence 4567788887 66 55444433333222 6888998543322221 11233332333 456679
Q ss_pred cEEEeccccccCChHH-------HHHHHHHHHHhhccCCC-CcEEEEEE
Q 030291 75 DAFFFKTVFHFFDDED-------CLKLLKKCREAIASNGE-RGKVLIID 115 (180)
Q Consensus 75 D~v~~~~~l~~~~~~~-------~~~~l~~~~~~L~p~~~-~G~~~~~~ 115 (180)
|+|+.....-.-+... ..++++.+...++.+.+ ++.+++..
T Consensus 81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 9888755443222211 12455666666655544 67777764
No 496
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=36.54 E-value=83 Score=19.21 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCeEEEEeecCCceeEEEE
Q 030291 149 EQEWGSLFVNAGFTHYKIAPIFGIKSLIEV 178 (180)
Q Consensus 149 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 178 (180)
..++.+.|++.||.+++....++. .+++.
T Consensus 3 Erel~~~L~~~Gf~v~R~~~Sg~~-DiiA~ 31 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAAGSGGG-DIIAG 31 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBSCCSSS-SEEEE
T ss_pred HHHHHHHHHhCCcEEEEecCCCCc-CEEEE
Confidence 357889999999998877655444 44443
No 497
>PRK14873 primosome assembly protein PriA; Provisional
Probab=36.47 E-value=2.9e+02 Score=23.99 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=58.3
Q ss_pred CeEEEeCCcccHHHHHHHHHCCCCeEEEeeCchhhccCCCCCCeeEEecCCc-c--cCCCccEEEecc--ccccCCh---
Q 030291 17 RSMVDVGGGTGAFARIISEAFPGIKCTVLDLPHAVTDMPQTDNLKYIEGDMF-Q--FIPPSDAFFFKT--VFHFFDD--- 88 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~-~--~~~~~D~v~~~~--~l~~~~~--- 88 (180)
..+-..|-|+-.....+.+.+|++++.-+|-...+..... ...++.+.-. + -.+.|.+|.... .+-+.+|
T Consensus 431 ~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~~--~~~IlVGTqgaepm~~g~~~lV~ildaD~~L~~pDfRA 508 (665)
T PRK14873 431 DRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVDA--GPALVVATPGAEPRVEGGYGAALLLDAWALLGRQDLRA 508 (665)
T ss_pred CcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhcc--CCCEEEECCCCcccccCCceEEEEEcchhhhcCCCcCh
Confidence 4588899999999999999999999999986556666543 4555555420 0 114577665432 2223333
Q ss_pred -HHHHHHHHHHHHhhccCCCCcEEEEE
Q 030291 89 -EDCLKLLKKCREAIASNGERGKVLII 114 (180)
Q Consensus 89 -~~~~~~l~~~~~~L~p~~~~G~~~~~ 114 (180)
+..-+.+.++....++..++|.+++.
T Consensus 509 ~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 509 AEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 22234444444444443336888886
No 498
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=36.46 E-value=1.7e+02 Score=21.25 Aligned_cols=61 Identities=25% Similarity=0.381 Sum_probs=37.6
Q ss_pred eEEEeCCcc-cH-HHHHHHHHCCCCeEEEeeCc-hhhcc-CCCCCCeeEEecCCccc-------CCCccEEEec
Q 030291 18 SMVDVGGGT-GA-FARIISEAFPGIKCTVLDLP-HAVTD-MPQTDNLKYIEGDMFQF-------IPPSDAFFFK 80 (180)
Q Consensus 18 ~iLdiG~G~-G~-~~~~l~~~~~~~~~~~~D~~-~~~~~-a~~~~~~~~~~~d~~~~-------~~~~D~v~~~ 80 (180)
+++=+|||. |. .+..|.+. +..++.+|.. +.... .........+++|..+. ...+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 456677776 33 33344444 4569999984 45555 33356677888888652 2369988873
No 499
>PRK10537 voltage-gated potassium channel; Provisional
Probab=36.32 E-value=2.2e+02 Score=22.73 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=47.5
Q ss_pred CeEEEeCCcccHHHHHHHHHC--CCCeEEEeeCchhhccCCCCCCeeEEecCCccc-------CCCccEEEeccccccCC
Q 030291 17 RSMVDVGGGTGAFARIISEAF--PGIKCTVLDLPHAVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFFKTVFHFFD 87 (180)
Q Consensus 17 ~~iLdiG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~~~~l~~~~ 87 (180)
..++=+|. |..+..+.+.. .+..++.+|... .+.. ...+..++.+|..++ ..+.+.+++.. +
T Consensus 241 ~HvII~G~--g~lg~~v~~~L~~~g~~vvVId~d~-~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t-----~ 311 (393)
T PRK10537 241 DHFIICGH--SPLAINTYLGLRQRGQAVTVIVPLG-LEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALR-----D 311 (393)
T ss_pred CeEEEECC--ChHHHHHHHHHHHCCCCEEEEECch-hhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC-----C
Confidence 44555554 45555444332 245688888542 1222 134577889998652 22577776622 3
Q ss_pred hHHHHHHHHHHHHhhccCCCCcEEEEEE
Q 030291 88 DEDCLKLLKKCREAIASNGERGKVLIID 115 (180)
Q Consensus 88 ~~~~~~~l~~~~~~L~p~~~~G~~~~~~ 115 (180)
++....+.....+.++| +.+++...
T Consensus 312 dD~~Nl~ivL~ar~l~p---~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSS---DVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCC---CCcEEEEE
Confidence 33333445556677888 67777644
No 500
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=36.08 E-value=1.5e+02 Score=22.73 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=37.4
Q ss_pred eEEEeCCcccHHHHHHHHHC---CCCeEEEeeCch-hhccCCCCCCeeEEecCCccc-------CCCccEEEe
Q 030291 18 SMVDVGGGTGAFARIISEAF---PGIKCTVLDLPH-AVTDMPQTDNLKYIEGDMFQF-------IPPSDAFFF 79 (180)
Q Consensus 18 ~iLdiG~G~G~~~~~l~~~~---~~~~~~~~D~~~-~~~~a~~~~~~~~~~~d~~~~-------~~~~D~v~~ 79 (180)
+|| |=+|+|..+..+.+.+ .+.+++++|.+. .........+++++.+|+.++ ...+|+|+-
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 455 4456787777776653 246899998643 222222235688999998621 125788774
Done!