BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030292
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2G0Q|A Chain A, Solution Structure Of At5g39720.1 From Arabidopsis
           Thaliana
          Length = 173

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 87/140 (62%)

Query: 21  FVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGIS 80
           FVYGS    DV+ V+L R P+  SA LPG++RF +KGR+YP I+P E   V G+VL G++
Sbjct: 21  FVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFRLKGRLYPCIVPSEKGEVHGKVLMGVT 80

Query: 81  DPXXXXXXXXXXXXYQRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLHM 140
                         Y+R T  +   D ++K+ V+TY+W NK DP+++G+W+FEEW+RLH 
Sbjct: 81  SDELENLDAVEGNEYERVTVGIVREDNSEKMAVKTYMWINKADPDMFGEWNFEEWKRLHK 140

Query: 141 KDFVKMTAGFVEELELPEAK 160
           K F++     +E  + P+ +
Sbjct: 141 KKFIETFKKIMECKKKPQGQ 160


>pdb|2JQV|A Chain A, Solution Structure At3g28950.1 From Arabidopsis Thaliana
          Length = 165

 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 86/149 (57%)

Query: 21  FVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGIS 80
           FVYGS+L   V  V+L R   +  A+L GY R+ +KG  YP I+  ++  V G+V+ G+S
Sbjct: 12  FVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKGLPYPCIVSSDSGKVNGKVITGVS 71

Query: 81  DPXXXXXXXXXXXXYQRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLHM 140
           D             Y+R T +V  +D ++K++V+TYVW NK+DP +YG+WDFEEWR +H 
Sbjct: 72  DAELNNFDVIEGNDYERVTVEVVRMDNSEKVKVETYVWVNKDDPRMYGEWDFEEWRVVHA 131

Query: 141 KDFVKMTAGFVEELELPEAKPRVAAYESF 169
           + FV+     +E  + P  K    A  S 
Sbjct: 132 EKFVETFRKMLEWNKNPNGKSMEEAVGSL 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,575,498
Number of Sequences: 62578
Number of extensions: 163051
Number of successful extensions: 298
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 2
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)