Query 030292
Match_columns 180
No_of_seqs 185 out of 1115
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:30:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06661 GGCT_like GGCT-like do 99.9 1.6E-22 3.4E-27 144.7 12.0 97 20-118 1-99 (99)
2 PF06094 AIG2: AIG2-like famil 99.9 1.8E-22 3.9E-27 145.9 12.4 96 20-119 1-102 (102)
3 COG2105 Uncharacterized conser 99.8 1.1E-19 2.4E-24 135.9 11.3 107 20-131 4-115 (120)
4 PHA03014 hypothetical protein; 99.8 6.1E-18 1.3E-22 133.3 13.1 103 18-121 3-117 (163)
5 KOG4450 Uncharacterized conser 99.7 1.3E-17 2.8E-22 128.2 1.3 143 16-172 5-168 (168)
6 PF04752 ChaC: ChaC-like prote 99.3 2E-10 4.2E-15 91.9 17.1 146 18-170 1-175 (178)
7 KOG4059 Uncharacterized conser 99.2 9E-12 1.9E-16 96.9 3.0 102 18-121 24-133 (193)
8 COG3703 ChaC Uncharacterized p 99.1 6.3E-10 1.4E-14 88.9 11.0 102 17-125 11-128 (190)
9 PF13772 AIG2_2: AIG2-like fam 98.9 3.1E-09 6.7E-14 74.7 5.3 62 70-134 1-65 (83)
10 KOG3182 Predicted cation trans 98.9 9.9E-08 2.2E-12 76.8 13.8 137 11-154 3-166 (212)
11 PRK08186 allophanate hydrolase 95.8 0.089 1.9E-06 49.5 10.4 100 14-117 468-574 (600)
12 TIGR02713 allophanate_hyd allo 95.4 0.21 4.6E-06 46.6 11.2 97 16-116 435-539 (561)
13 smart00526 H15 Domain in histo 45.2 36 0.00077 22.2 3.4 32 142-174 6-37 (66)
14 PF00538 Linker_histone: linke 31.7 49 0.0011 22.3 2.5 33 142-175 4-36 (77)
15 PF09070 PFU: PFU (PLAA family 29.4 57 0.0012 24.3 2.7 31 145-177 83-113 (116)
16 cd00073 H15 linker histone 1 a 25.9 87 0.0019 21.7 3.0 34 141-175 5-38 (88)
17 PHA00684 hypothetical protein 22.7 48 0.001 25.2 1.2 12 20-31 2-13 (128)
No 1
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.89 E-value=1.6e-22 Score=144.66 Aligned_cols=97 Identities=32% Similarity=0.529 Sum_probs=89.0
Q ss_pred EEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCCCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhccc--CCeE
Q 030292 20 VFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGISDPELLVLDEFEDF--EYQR 97 (180)
Q Consensus 20 vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~Eg~--~Y~R 97 (180)
+|+|||||++..++.+++......+|++.||++.+....+||+|++++++.|+|+|| .++++++++||.+|+. .|.|
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~~~p~~~~~~~~~v~G~v~-~i~~~~l~~LD~~E~~~~~Y~r 79 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGSGYPGLVPGPGARVWGELY-EVDPEDLARLDAFEGVPGGYRR 79 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCCccCEEEeCCCCEEEEEEE-EECHHHHHhhhhhcCCCCCeEE
Confidence 699999999999998877777889999999999887656799999999999999999 6999999999999995 9999
Q ss_pred EEEEEEECCCCcEEEEEEEEe
Q 030292 98 TTADVSLVDTADKLQVQTYVW 118 (180)
Q Consensus 98 ~~v~V~~~dgg~~~~A~vYv~ 118 (180)
+.|+|.+.+ +..++||+|++
T Consensus 80 ~~v~v~~~~-~~~~~a~~Y~~ 99 (99)
T cd06661 80 EEVEVELED-GEGVEAWVYVA 99 (99)
T ss_pred EEEEEEeCC-CCEEEEEEEeC
Confidence 999999987 68899999985
No 2
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=99.89 E-value=1.8e-22 Score=145.94 Aligned_cols=96 Identities=35% Similarity=0.627 Sum_probs=80.4
Q ss_pred EEEcCCCCCCchhHhHhhC--CC-ceeeEEEcCeEEEccCCCCeeEEEECCCC-eEEEEEEeecCHHHHHHHHHhcc--c
Q 030292 20 VFVYGSLLADDVVRVLLKR--IP-QSSSAILPGYRRFSIKGRVYPAILPVENK-HVTGRVLFGISDPELLVLDEFED--F 93 (180)
Q Consensus 20 vFvYGTLm~~~~l~~~l~~--~~-~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~-~V~G~ly~~lt~~~l~~LD~~Eg--~ 93 (180)
+|+|||||.+..++.++++ .. ...++++. .++.....+||+|++++++ .|.|+|| .++++++++||+||+ +
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~yP~l~~~~~~~~V~G~l~-~v~~~~l~~LD~~E~~~~ 77 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLG--GRYLYGGGGYPALVPGEGSGRVEGELY-EVDDEELARLDEYEGEGS 77 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEE--EEEEETTSSCEEEESCTTSSEEEEEEE-EE-HHHHHHHHHHTTTTT
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEE--eEEEeCCCCCCEEEEcCCCCEEEEEEE-EECHHHHHhhHhhcCCCC
Confidence 7999999999999999974 33 34566665 3344666789999999887 9999999 799999999999964 8
Q ss_pred CCeEEEEEEEECCCCcEEEEEEEEee
Q 030292 94 EYQRTTADVSLVDTADKLQVQTYVWT 119 (180)
Q Consensus 94 ~Y~R~~v~V~~~dgg~~~~A~vYv~~ 119 (180)
.|.|+.|+|.+.+ |+.++||||+|+
T Consensus 78 ~Y~R~~v~v~~~~-g~~~~a~vYv~~ 102 (102)
T PF06094_consen 78 LYRRVRVPVELGD-GEEVEAWVYVWN 102 (102)
T ss_dssp SEEEEEEEEECCT-SSEEEEEEEEE-
T ss_pred ceEEEEEEEEeCC-CCEeEEEEEEEC
Confidence 9999999999988 688899999995
No 3
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.1e-19 Score=135.92 Aligned_cols=107 Identities=32% Similarity=0.478 Sum_probs=92.8
Q ss_pred EEEcCCCCCCchhHh-HhhCCCceeeEEEcCeEEEccCCCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhcc-cCCeE
Q 030292 20 VFVYGSLLADDVVRV-LLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGISDPELLVLDEFED-FEYQR 97 (180)
Q Consensus 20 vFvYGTLm~~~~l~~-~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~Eg-~~Y~R 97 (180)
|||||||+.++.|++ .+.+......+.+.||+++... .+||+++++++ .|+|+|| .++.+.|+.||.+|+ ..|.|
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~ly~lg-~~YP~~~~g~~-~V~Gevy-~~d~~~l~~LDelE~~~~y~r 80 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQLYDLG-PGYPGLVPGEG-KVHGEVY-RIDEETLEALDELEDYGGYYR 80 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeeeeccC-CCCcEEcCCCC-EEEEEEE-EECHHHHhhhhhhhccCceEE
Confidence 999999999999998 6777777888889999998654 45999999876 9999999 699999999999999 56999
Q ss_pred EEEEEEECCCCcEEEEEEEEeeCCCCC---CCCCCCC
Q 030292 98 TTADVSLVDTADKLQVQTYVWTNKNDP---NLYGDWD 131 (180)
Q Consensus 98 ~~v~V~~~dgg~~~~A~vYv~~~~~~~---~~~~~W~ 131 (180)
+.|.|++.. |.. .||+|+++..... +.+++|.
T Consensus 81 ~~v~v~~~~-G~~-~aw~Y~y~~~~~~~~~I~sGDw~ 115 (120)
T COG2105 81 REVEVTTPL-GSK-EAWLYVYAERVRGLTLIPSGDWL 115 (120)
T ss_pred EEEEEEcCC-CCE-EEEEEEEcCCCCcceEccCCChh
Confidence 999999988 454 8999999988764 2788884
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.77 E-value=6.1e-18 Score=133.29 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=87.7
Q ss_pred eeEEEcCCCCCCchhHhHhh---CCCceeeEEEc--CeEEEccC--CCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHh
Q 030292 18 HNVFVYGSLLADDVVRVLLK---RIPQSSSAILP--GYRRFSIK--GRVYPAILPVENKHVTGRVLFGISDPELLVLDEF 90 (180)
Q Consensus 18 ~~vFvYGTLm~~~~l~~~l~---~~~~~~~A~L~--Gy~l~~~~--~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~ 90 (180)
+++|+|||+|+...+...+. .+..++.|.|. +|++.+.. ++++.+|+|++|+.|+|+|| +++..+++.||.+
T Consensus 3 ~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~~~~~Ga~ATIvp~~g~~V~Gvlw-~i~~~dl~~LD~~ 81 (163)
T PHA03014 3 KYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYSKEIDSVIASIKKDDNGIVFGILY-EFNESIMKKFDKQ 81 (163)
T ss_pred eEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEeccCCcCCceEEEEECCCCEEEEEEE-EeCHHHHHHHhhh
Confidence 57899999999999999998 55578899999 45665432 35789999999999999999 7999999999999
Q ss_pred cc---cCCeEEEEEEEECCCCcEEEEEEE--EeeCC
Q 030292 91 ED---FEYQRTTADVSLVDTADKLQVQTY--VWTNK 121 (180)
Q Consensus 91 Eg---~~Y~R~~v~V~~~dgg~~~~A~vY--v~~~~ 121 (180)
|| ..|+|..|.|.+.++++.++|++| +.+..
T Consensus 82 EGvp~~~Y~~~~v~V~~~~~~~~~~a~~Y~~~~~~~ 117 (163)
T PHA03014 82 EFIDKNIYKLAKMNVLDLEDEKIIEAQAYKAILDDD 117 (163)
T ss_pred cCCCcCceEEEEEEEEeCCCCcEEEEEEEehhcCCC
Confidence 99 469999999998764578999999 65443
No 5
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.3e-17 Score=128.25 Aligned_cols=143 Identities=23% Similarity=0.332 Sum_probs=105.8
Q ss_pred CeeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCCCCeeEEE------------ECCCCeEEEEEEeecCHHH
Q 030292 16 HKHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAIL------------PVENKHVTGRVLFGISDPE 83 (180)
Q Consensus 16 ~~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv------------~~~g~~V~G~ly~~lt~~~ 83 (180)
.+..|||||||+.++.+|.++.... .+.|...|-.... ..||.++ |..|..|+|+|| .+++..
T Consensus 5 ~~~lvFVYGTLKrg~pNh~~L~d~~-~g~A~F~gr~~T~---~kyPLVigt~ynIPfLLnkpGsG~~V~GElY-~Vd~rm 79 (168)
T KOG4450|consen 5 AKNLVFVYGTLKRGQPNHFLLEDLI-NGDAVFIGRGTTL---LKYPLVIGTRYNIPFLLNKPGSGYHVEGELY-EVDERM 79 (168)
T ss_pred cceEEEEEeeecCCCCCchhhhhcc-CCceEEEEeceec---cccceEeecccCCceEEcCCCCcceeeeEEE-EeCHHH
Confidence 4568999999999999999886543 3444444422221 1355443 234779999999 799999
Q ss_pred HHHHHHhcc--cCCeEEEEEEEECC------CCcEEEEEEEEeeCCCCCCCCCCCChHHHHHHhHHHH-HHHHHHHHHhh
Q 030292 84 LLVLDEFED--FEYQRTTADVSLVD------TADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLHMKDF-VKMTAGFVEEL 154 (180)
Q Consensus 84 l~~LD~~Eg--~~Y~R~~v~V~~~d------gg~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~m~~~ 154 (180)
|.+||.+|+ +.|+|++++|..++ |+..+.||+|....-. -+-|...++..| -+..+.|....
T Consensus 80 L~~LD~lE~~~~~Y~R~~i~v~~~ede~eg~g~~~v~c~~Y~~~~fp---------e~l~~~~~~~sY~~~~~~~Yv~r~ 150 (168)
T KOG4450|consen 80 LSRLDELEGCPNHYEREPIRVIEEEDEEEGEGGVTVQCAVYAHFGFP---------EELWEKRGLCSYGENDGHPYVRRK 150 (168)
T ss_pred HhhhHhhcccHHHhhhhhhHHHHhhhhcccCCCceeeehhHHHhcCC---------HHHHhccccccccCCCCccccccc
Confidence 999999999 79999999987654 1336888888775433 244556666666 35566888889
Q ss_pred cCCCCChhHHHHHHHhhc
Q 030292 155 ELPEAKPRVAAYESFYQQ 172 (180)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~ 172 (180)
.+|-..+.+++|.-|+|+
T Consensus 151 ~R~~~~~~~Ddi~~~vss 168 (168)
T KOG4450|consen 151 DRPMFSSALDDIEYFVSS 168 (168)
T ss_pred ccccccchhhhhhhhccC
Confidence 999998999999999985
No 6
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=99.32 E-value=2e-10 Score=91.95 Aligned_cols=146 Identities=25% Similarity=0.209 Sum_probs=100.5
Q ss_pred eeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCC-------CCeeE----EEECCCCeEEEEEEeecCH----H
Q 030292 18 HNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKG-------RVYPA----ILPVENKHVTGRVLFGISD----P 82 (180)
Q Consensus 18 ~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~-------~~yP~----lv~~~g~~V~G~ly~~lt~----~ 82 (180)
++||.|||||+.+.++.. ...+|+|.||+|.|+.+ ...|+ |++++++.|+|++|. |++ +
T Consensus 1 ~WVFGYGSLiW~p~f~~~-----e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayr-v~~~~~~~ 74 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYA-----ERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYR-VPEEDAEE 74 (178)
T ss_pred CEEEEeccceeCCCCCcc-----ceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEE-ecCcCHHH
Confidence 479999999998877521 35789999999987653 23564 455666999999995 776 5
Q ss_pred HHHHHHHhcc-cCCeEEEEEEEE--C-C-CCcEEEEEEEEeeCCCCCCCCCCCChHHHHHH---------hHHHHHHHHH
Q 030292 83 ELLVLDEFED-FEYQRTTADVSL--V-D-TADKLQVQTYVWTNKNDPNLYGDWDFEEWRRL---------HMKDFVKMTA 148 (180)
Q Consensus 83 ~l~~LD~~Eg-~~Y~R~~v~V~~--~-d-gg~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~---------~~~~~~~~~~ 148 (180)
.++.||..|. .+|.+..|++.+ . + ++..++|.+|+.+++.....+.. ++++-.+. .-.+|+-...
T Consensus 75 ~l~~L~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~~~n~~y~g~~-~~~~~A~~Ia~a~G~~G~N~eYL~~l~ 153 (178)
T PF04752_consen 75 VLEYLDEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVADPDNPQYLGPL-PLEEIARIIATASGPSGSNREYLFNLA 153 (178)
T ss_pred HHHHHhhcccccccceEEEEEEEeccCCCCceEEEEEEEEecCCCccccCCC-CHHHHHHHHhheECcCcCCHHHHHHHH
Confidence 6899999999 789999999876 1 2 12235999999988665432222 44443221 1267888888
Q ss_pred HHHHhhcCCCCChhHHHHHHHh
Q 030292 149 GFVEELELPEAKPRVAAYESFY 170 (180)
Q Consensus 149 ~~m~~~~~~~~~~~~~~~~~~~ 170 (180)
+.|+..+---..+-|++++.-|
T Consensus 154 ~~L~~~gp~i~D~~l~~L~~~V 175 (178)
T PF04752_consen 154 EALRELGPGIRDPHLFALERRV 175 (178)
T ss_pred HHHHHhCCCCCChHHHHHHHHH
Confidence 8888877322334566555544
No 7
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=9e-12 Score=96.86 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=87.8
Q ss_pred eeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccC-----CCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhcc
Q 030292 18 HNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIK-----GRVYPAILPVENKHVTGRVLFGISDPELLVLDEFED 92 (180)
Q Consensus 18 ~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~-----~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~Eg 92 (180)
..+|+|||+|.....|..-..+....+|.|++|++-+-. .++..+|++.+|+.|+|.|| -++..-+..||+-||
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W~G~vATI~~t~GdeVWG~vW-Km~~snl~slDeQEg 102 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGWSGSVATIVPTQGDEVWGTVW-KMDLSNLPSLDEQEG 102 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeeccccccccccceeEEecCCCCeEEEEEE-EcccccCccchhhhc
Confidence 568999999999998866666667899999999986532 24678999999999999999 599999999999998
Q ss_pred ---cCCeEEEEEEEECCCCcEEEEEEEEeeCC
Q 030292 93 ---FEYQRTTADVSLVDTADKLQVQTYVWTNK 121 (180)
Q Consensus 93 ---~~Y~R~~v~V~~~dgg~~~~A~vYv~~~~ 121 (180)
..|.++.|.|.+.. |+.++|.+|...+-
T Consensus 103 v~~G~Y~~~~V~V~t~e-g~~itcR~Yl~snl 133 (193)
T KOG4059|consen 103 VSQGIYEPRTVYVKTHE-GESITCRAYLLSNL 133 (193)
T ss_pred ccccceEEEEEEEecCC-CceeehhHhhhhhh
Confidence 57999999999987 78999999998653
No 8
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=99.13 E-value=6.3e-10 Score=88.94 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=82.1
Q ss_pred eeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCC-------CCeeEEEE--CCCCeEEEEEEeecC----HHH
Q 030292 17 KHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKG-------RVYPAILP--VENKHVTGRVLFGIS----DPE 83 (180)
Q Consensus 17 ~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~-------~~yP~lv~--~~g~~V~G~ly~~lt----~~~ 83 (180)
..+||.|||||+.+.++.. ...+|++.||++.++.. ..-|+++. ..|++|.|++|. |. ++.
T Consensus 11 ~~WVFgYGSLmW~P~f~~~-----e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~~GGsc~GvafR-ip~~~~~~v 84 (190)
T COG3703 11 ELWVFGYGSLMWNPGFEFT-----EVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLDRGGSCEGVAYR-IPEAHAEEV 84 (190)
T ss_pred CeEEEEecceeecCCcccc-----ceeEEEEecceeEEEEEEeeecCCcCCCceEEEeeCCCcEEEEEEE-cCchhhHHH
Confidence 3899999999999887633 25789999999977642 24677775 469999999994 88 667
Q ss_pred HHHHHHhcc---cCCeEEEEEEEECCCCcEEEEEEEEeeCCCCCC
Q 030292 84 LLVLDEFED---FEYQRTTADVSLVDTADKLQVQTYVWTNKNDPN 125 (180)
Q Consensus 84 l~~LD~~Eg---~~Y~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~ 125 (180)
++.|++.|. ..|.-+.++|.+.+ |..+.|.+||.+......
T Consensus 85 ~~yL~~RE~~~t~~y~p~~l~v~~~~-g~~~~al~~v~~~~h~qy 128 (190)
T COG3703 85 LEYLREREMNYTLVYVPRWLPVELEG-GRRVNALVFVGDRKHPQY 128 (190)
T ss_pred HHHHHHhhccccceeeeEEEEEecCC-CcEEEEEEEEecCCcccc
Confidence 899999998 47888888888877 799999999998766443
No 9
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=98.88 E-value=3.1e-09 Score=74.72 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=49.2
Q ss_pred eEEEEEEeecCHHHHHHHHHhcc--c-CCeEEEEEEEECCCCcEEEEEEEEeeCCCCCCCCCCCChHH
Q 030292 70 HVTGRVLFGISDPELLVLDEFED--F-EYQRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEE 134 (180)
Q Consensus 70 ~V~G~ly~~lt~~~l~~LD~~Eg--~-~Y~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~~~~~W~~~~ 134 (180)
.|+|+|| .+++++++.||.+|| . .|+|..|+|.+.+ |..+.|++|+.+.... ..+..|.++.
T Consensus 1 ~V~Gvly-~l~~~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~-g~~~~a~tY~~~~~~~-~~Ps~~Yl~~ 65 (83)
T PF13772_consen 1 RVWGVLY-ELSEEDLESLDRYEGVPIGAYRRIEVTVSTAD-GKPVEAFTYVANPKPE-GPPSDRYLDL 65 (83)
T ss_dssp EEEEEEE-EEEGGGHHHHHHHTTTTTTSEEEEEEEEEETT-CEEEEEEEEEESSEEE-----HHHHHH
T ss_pred CEEEEEE-EECHHHHHHHHHhcCCCCCCEEEEEEEEEcCC-CCEEEEEEEEcCCCCC-CCCCHHHHHH
Confidence 5999999 699999999999999 3 7999999999977 7899999999987643 3334444443
No 10
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=98.86 E-value=9.9e-08 Score=76.79 Aligned_cols=137 Identities=24% Similarity=0.250 Sum_probs=96.4
Q ss_pred ccCCCCeeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCC----C---Cee----EEEECCCCeEEEEEEeec
Q 030292 11 VVNHNHKHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKG----R---VYP----AILPVENKHVTGRVLFGI 79 (180)
Q Consensus 11 ~~~~~~~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~----~---~yP----~lv~~~g~~V~G~ly~~l 79 (180)
+..++...+||.||||.+.+.++.- ...++.+.||.|.+.++ + ..| +|++......+|++|. +
T Consensus 3 ~~s~~~~lWVFGYGSLiW~Pgf~y~-----~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~-V 76 (212)
T KOG3182|consen 3 TTSDPMALWVFGYGSLIWKPGFHYD-----ESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYR-V 76 (212)
T ss_pred CCCCCceEEEEeecceeecCCCCcc-----ccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEE-e
Confidence 4456678999999999998876522 24568899999877654 1 244 6778888899999995 7
Q ss_pred CH----HHHHHHHHhcccCCeEEEEEEEECCC---CcEEEEEEEEeeCCCCCCCCCCCChHHHHHH---------hHHHH
Q 030292 80 SD----PELLVLDEFEDFEYQRTTADVSLVDT---ADKLQVQTYVWTNKNDPNLYGDWDFEEWRRL---------HMKDF 143 (180)
Q Consensus 80 t~----~~l~~LD~~Eg~~Y~R~~v~V~~~dg---g~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~---------~~~~~ 143 (180)
.. +-++.||..|.++|.+..|++...++ ...+.+.+|+...+.....+.+ .+++-.+. +-.+|
T Consensus 77 ~g~~~~~~l~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp~N~~ylGp~-ple~iArqI~t~~GpsG~N~eY 155 (212)
T KOG3182|consen 77 RGKQASEVLEYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATPDNEYYLGPA-PLEEIARQIVTARGPSGPNREY 155 (212)
T ss_pred cchhHHHHHHHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecCCCccccCCc-cHHHHHHHHHhccCCCCCcHHH
Confidence 75 34677888888999999999998763 3467899999987755433333 55554432 11455
Q ss_pred HHHHHHHHHhh
Q 030292 144 VKMTAGFVEEL 154 (180)
Q Consensus 144 ~~~~~~~m~~~ 154 (180)
+-.-.++|+..
T Consensus 156 Lf~La~am~~l 166 (212)
T KOG3182|consen 156 LFNLAKAMRQL 166 (212)
T ss_pred HHHHHHHHHHc
Confidence 55555566555
No 11
>PRK08186 allophanate hydrolase; Provisional
Probab=95.81 E-value=0.089 Score=49.46 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=69.2
Q ss_pred CCCeeeEEEcCCCCCCchhHhHh-hCC-Ccee-eEEEcCeEEEccCCC--CeeEEEECC--CCeEEEEEEeecCHHHHHH
Q 030292 14 HNHKHNVFVYGSLLADDVVRVLL-KRI-PQSS-SAILPGYRRFSIKGR--VYPAILPVE--NKHVTGRVLFGISDPELLV 86 (180)
Q Consensus 14 ~~~~~~vFvYGTLm~~~~l~~~l-~~~-~~~~-~A~L~Gy~l~~~~~~--~yP~lv~~~--g~~V~G~ly~~lt~~~l~~ 86 (180)
......+.|-|.-|.+..++.-| .+- ..++ .-+.+.||+|.+.+. .=|+|++.+ |..|+|+|| +++.+.+..
T Consensus 468 ~~~~~~~av~gah~~g~pl~~~l~~~~~~~~~~~~ta~~yrl~~l~~~~~~~pgl~~~~~~g~~i~~e~w-~~~~~~~~~ 546 (600)
T PRK08186 468 GPDRVRLAVVGAHLSGMPLNHQLTSRGARLLEATTTAPDYRLYALAGTPPPKPGLVRVAEGGAAIAVEVW-ELPPAAFGS 546 (600)
T ss_pred CCCceEEEEecccccCCCccHHHHhCCCEEecccccCccceEEeCCCCCCCCCceEEeCCCCCeEEEEEe-eCCHHHHHH
Confidence 34567899999999999987544 332 2333 346789999988763 348999754 779999999 799998866
Q ss_pred HHHhcccCCeEEEEEEEECCCCcEEEEEEEE
Q 030292 87 LDEFEDFEYQRTTADVSLVDTADKLQVQTYV 117 (180)
Q Consensus 87 LD~~Eg~~Y~R~~v~V~~~dgg~~~~A~vYv 117 (180)
+=.-+-.--.-- .|+|.| |+.+.+.++-
T Consensus 547 f~~~~p~pl~~g--~~~l~d-g~~~~gf~~~ 574 (600)
T PRK08186 547 FVAAIPAPLGIG--TVELAD-GRWVKGFLCE 574 (600)
T ss_pred HHhCCCCCCccc--eEEecC-CCEEEEEEec
Confidence 555554222222 467888 6776665543
No 12
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=95.40 E-value=0.21 Score=46.63 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=67.2
Q ss_pred CeeeEEEcCCCCCCchhHhHh-hCC-Ccee-eEEEcCeEEEccCCCC--eeEEEECC---CCeEEEEEEeecCHHHHHHH
Q 030292 16 HKHNVFVYGSLLADDVVRVLL-KRI-PQSS-SAILPGYRRFSIKGRV--YPAILPVE---NKHVTGRVLFGISDPELLVL 87 (180)
Q Consensus 16 ~~~~vFvYGTLm~~~~l~~~l-~~~-~~~~-~A~L~Gy~l~~~~~~~--yP~lv~~~---g~~V~G~ly~~lt~~~l~~L 87 (180)
....++|-|.-|.+..++.-| .+- ..++ .-+.+.||+|.+.+.. =|+|++.. |..|+|||| +++.+.+..+
T Consensus 435 ~~~~~~v~gah~~g~pl~~~l~~~~~~~~~~~~ta~~yrl~~l~~~~p~~pgl~~~~~~~g~~i~~e~w-~~~~~~~~~f 513 (561)
T TIGR02713 435 RVVRLAVVGAHLSGMPLNWQLTERGARLLRTTRTAPDYRLYALAGTPPPKPGLVRVAPGGGAAIEVEVW-ELPAEAFGRF 513 (561)
T ss_pred CceEEEEecccccCCCccHHHHhCCCEEecccccCccceEEECCCCCCCCCceEeecCCCCCeEEEEEe-eCCHHHHHHH
Confidence 567899999999999987544 332 2333 3467899999887643 38898743 668999999 7999988765
Q ss_pred HHhcccCCeEEEEEEEECCCCcEEEEEEE
Q 030292 88 DEFEDFEYQRTTADVSLVDTADKLQVQTY 116 (180)
Q Consensus 88 D~~Eg~~Y~R~~v~V~~~dgg~~~~A~vY 116 (180)
=.-+-.--.-- +|+|.| |+.+.+.++
T Consensus 514 ~~~~p~pl~~g--~~~l~d-g~~~~gf~~ 539 (561)
T TIGR02713 514 VAAIPAPLGIG--TVTLAD-GSWVKGFIC 539 (561)
T ss_pred HhCCCCCCccc--eEEecC-CCEEEEEEe
Confidence 55554222222 467888 677665544
No 13
>smart00526 H15 Domain in histone families 1 and 5.
Probab=45.18 E-value=36 Score=22.16 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHhhcCC
Q 030292 142 DFVKMTAGFVEELELPEAKPRVAAYESFYQQNA 174 (180)
Q Consensus 142 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 174 (180)
.|.++..+.+...+.++| .++..|.+|+.++.
T Consensus 6 ~~~~mI~eAI~~l~er~G-sS~~aI~kyi~~~~ 37 (66)
T smart00526 6 PYSEMITEAISALKERKG-SSLQAIKKYIEANY 37 (66)
T ss_pred CHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHhC
Confidence 466778888888999999 99999999999874
No 14
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=31.71 E-value=49 Score=22.25 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHhhcCCC
Q 030292 142 DFVKMTAGFVEELELPEAKPRVAAYESFYQQNAD 175 (180)
Q Consensus 142 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 175 (180)
.|..+..+.+...+.++| .++.+|..|+.++-+
T Consensus 4 ~y~~mI~eAI~~l~er~G-sS~~aI~kyI~~~y~ 36 (77)
T PF00538_consen 4 PYSDMILEAIKALKERKG-SSLQAIKKYIKAKYK 36 (77)
T ss_dssp CHHHHHHHHHHHCCSSSS-EEHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHhcC
Confidence 467778888899999999 999999999988653
No 15
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=29.36 E-value=57 Score=24.34 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHhhcCCCCC
Q 030292 145 KMTAGFVEELELPEAKPRVAAYESFYQQNADNS 177 (180)
Q Consensus 145 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (180)
.+|..|+...+-|.+ .+++|+.|+.+|....
T Consensus 83 ~aAq~Fi~~n~Lp~~--yl~qI~~FI~~N~~~~ 113 (116)
T PF09070_consen 83 EAAQKFIERNNLPQS--YLDQIANFIIQNTKGA 113 (116)
T ss_dssp HHHHHHHHHHT--CC--HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCc
Confidence 467788888888877 9999999998876543
No 16
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=25.92 E-value=87 Score=21.69 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHhhcCCC
Q 030292 141 KDFVKMTAGFVEELELPEAKPRVAAYESFYQQNAD 175 (180)
Q Consensus 141 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 175 (180)
..|..+..+.+...+.++| .++..|..|+.++-.
T Consensus 5 P~y~~MI~eAI~~l~er~G-sS~~aI~kyI~~~y~ 38 (88)
T cd00073 5 PPYSEMVTEAIKALKERKG-SSLQAIKKYIEAKYK 38 (88)
T ss_pred CCHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHCC
Confidence 3567788888888999999 999999999998743
No 17
>PHA00684 hypothetical protein
Probab=22.68 E-value=48 Score=25.22 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=10.7
Q ss_pred EEEcCCCCCCch
Q 030292 20 VFVYGSLLADDV 31 (180)
Q Consensus 20 vFvYGTLm~~~~ 31 (180)
|||+||++.+..
T Consensus 2 IFVFGSNlaG~H 13 (128)
T PHA00684 2 IFVFGSNLAGAH 13 (128)
T ss_pred eEEecCCccccc
Confidence 899999998874
Done!