Query 030292
Match_columns 180
No_of_seqs 185 out of 1115
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:38:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqv_A AT3G28950, AIG2 protein 100.0 8.7E-39 3E-43 250.5 17.9 159 16-174 7-165 (165)
2 2g0q_A AT5G39720.1 protein; st 100.0 1.3E-38 4.4E-43 251.9 17.4 157 16-173 16-172 (173)
3 1xhs_A Hypothetical UPF0131 pr 99.9 5.9E-24 2E-28 158.9 12.2 106 18-133 1-111 (121)
4 1v30_A Hypothetical UPF0131 pr 99.9 1.1E-22 3.9E-27 152.5 11.3 106 16-132 6-114 (124)
5 3cry_A Gamma-glutamyl cyclotra 99.9 4.4E-21 1.5E-25 152.6 11.5 155 15-175 14-185 (188)
6 3jud_A AIG2-like domain-contai 99.8 6.5E-21 2.2E-25 147.8 11.0 107 17-124 1-127 (153)
7 1vkb_A Hypothetical protein; g 99.8 7.1E-21 2.4E-25 148.6 10.6 116 15-133 11-143 (161)
8 2qik_A UPF0131 protein YKQA; N 99.8 1.2E-18 4E-23 146.8 12.0 113 17-138 2-123 (285)
9 2qik_A UPF0131 protein YKQA; N 99.8 4.1E-18 1.4E-22 143.5 15.0 141 15-158 125-278 (285)
10 2k89_A PLA2P, PLAP, phospholip 39.1 27 0.00093 23.4 3.2 29 145-175 43-71 (80)
11 1uhm_A Histone H1, histone HHO 32.4 46 0.0016 21.7 3.5 32 142-174 6-37 (78)
12 1uss_A Histone H1; DNA binding 21.9 68 0.0023 21.4 2.8 31 142-173 9-39 (88)
No 1
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=100.00 E-value=8.7e-39 Score=250.53 Aligned_cols=159 Identities=41% Similarity=0.772 Sum_probs=147.5
Q ss_pred CeeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCCCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhcccCC
Q 030292 16 HKHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGISDPELLVLDEFEDFEY 95 (180)
Q Consensus 16 ~~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~Eg~~Y 95 (180)
.+++||+|||||+++.|+.++++.+...+|+|+||+++++.+..||+|++++++.|.|+||..+++++|++||.||+..|
T Consensus 7 ~~~~vFvYGSL~~~~~~~~~~~~~~~~~~a~l~Gy~~~~~~~~~yP~lv~~~~~~V~G~v~~~v~~~~l~~LD~~E~~~Y 86 (165)
T 2jqv_A 7 QSHNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKGLPYPCIVSSDSGKVNGKVITGVSDAELNNFDVIEGNDY 86 (165)
T ss_dssp SCEEEEESSTTSSHHHHHHHTSSCCEEEEEEEETCEECCCTTSSSCCEESCCSSEEEEEEEEEECHHHHHHHHHTTTTSE
T ss_pred CceEEEEEcCCCCchhhHHHhCCCCccceEEEeCeEEEecCCCCCCEEEECCCCEEEEEEEEeCCHHHHHHHHHhccCCc
Confidence 57899999999999999999998888999999999998887778999999999999999996699999999999999999
Q ss_pred eEEEEEEEECCCCcEEEEEEEEeeCCCCCCCCCCCChHHHHHHhHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhhcCC
Q 030292 96 QRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLHMKDFVKMTAGFVEELELPEAKPRVAAYESFYQQNA 174 (180)
Q Consensus 96 ~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 174 (180)
+|+.|+|.+.+|+..++||+|++++..+.+..++|+++.|.+++++.|++++++||+++++|++++++++|+.|+++++
T Consensus 87 ~R~~v~v~~~dg~~~~~a~vYv~~~~~~~i~~G~W~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (165)
T 2jqv_A 87 ERVTVEVVRMDNSEKVKVETYVWVNKDDPRMYGEWDFEEWRVVHAEKFVETFRKMLEWNKNPNGKSMEEAVGSLLSSGD 165 (165)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEETTTTSCCSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHSCCCCCCCC
T ss_pred EEEEEEEEECCCCeEEEEEEEEECCCcccccCCCcCHHHHHHHHHHHHHHHHHHHHHhccCCCccchhhHHHhhhhCCC
Confidence 9999999998843446899999988877778899999999999999999999999999999999999999999999875
No 2
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-38 Score=251.87 Aligned_cols=157 Identities=42% Similarity=0.833 Sum_probs=132.4
Q ss_pred CeeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCCCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhcccCC
Q 030292 16 HKHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGISDPELLVLDEFEDFEY 95 (180)
Q Consensus 16 ~~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~Eg~~Y 95 (180)
.+++||+|||||+++.|+.++++.+...+|+|+||+++++.+.+||+|++++++.|.|+||..+++++|++||.||+..|
T Consensus 16 ~~~~vFvYGSL~~~~~~~~~l~~~~~~~~A~l~Gy~l~~~~~~~yP~lv~~~g~~V~G~v~~~v~~~~l~~LD~~Eg~~Y 95 (173)
T 2g0q_A 16 QLHNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFRLKGRLYPCIVPSEKGEVHGKVLMGVTSDELENLDAVEGNEY 95 (173)
T ss_dssp SSEEEEECSGGGCHHHHHHHTSSCCEEEEEEEETCEECCCCSSSCCCEECCTTCEEEEEEEEEECHHHHHHHHHHHTTTE
T ss_pred CCEEEEEEcCCCCCccCHHHhcCCCceeEEEEcCeEEEeeCCCeeeEEEECCCCEEEEEEEEEcCHHHHHHHHHHhhcCC
Confidence 47899999999999999999999888999999999988777678999999999999999986799999999999999999
Q ss_pred eEEEEEEEECCCCcEEEEEEEEeeCCCCCCCCCCCChHHHHHHhHHHHHHHHHHHHHhhcCCCCChhHHHHHHHhhcC
Q 030292 96 QRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLHMKDFVKMTAGFVEELELPEAKPRVAAYESFYQQN 173 (180)
Q Consensus 96 ~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 173 (180)
+|+.|+|.+.++++.+.||+|++++..+....+.|++++|.+.+++.|+.++++||+++++|+++++++ |+.|++++
T Consensus 96 ~R~~v~V~~~dg~~~v~A~vYv~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~m~~~~~p~~~~~~~-~~~~~~~~ 172 (173)
T 2g0q_A 96 ERVTVGIVREDNSEKMAVKTYMWINKADPDMFGEWNFEEWKRLHKKKFIETFKKIMECKKKPQGQGNDD-ISHVLRED 172 (173)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEESCSSCSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC---------------
T ss_pred EEEEEEEEECCCCeEEEEEEEEEcCccccccCCCcCHHHHHHHhHHHHHHHHHHHHHhccCCCCCcHHH-HHHHHhcC
Confidence 999999999875578999999998876555678899999999999999999999999999999988888 99999986
No 3
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=99.91 E-value=5.9e-24 Score=158.86 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=91.9
Q ss_pred eeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCCCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhcc--cCC
Q 030292 18 HNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGISDPELLVLDEFED--FEY 95 (180)
Q Consensus 18 ~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~Eg--~~Y 95 (180)
+.+|||||||.++.|+.++.+...+++|+++||+++.+. +||+|++++| .|.|+|| .+++++|++||.||+ ..|
T Consensus 1 ~~vFvYGTL~~g~~~~~~l~~a~~~g~a~l~gy~L~~~g--~yP~lv~~~g-~V~Gevy-~v~~~~l~~LD~~Eg~~~~Y 76 (121)
T 1xhs_A 1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLG--HYPGAVPGNG-TVHGEVY-RIDNATLAELDALRTRGGEY 76 (121)
T ss_dssp CEEEECSCTTCCCTTTHHHHTCEEEEEEEEEEEEEEECS--SSEEEEEEEE-EEEEEEE-ECCHHHHHHHHHHHSTTSCE
T ss_pred CEEEEECCCCCcccchhhcCCCcEEEEEEEeCcEEEEec--CCCeEEecCC-EEEEEEE-EeCHHHHHHHHHhcCCCCCE
Confidence 479999999999999999988777889999999998664 7999999766 9999999 599999999999998 799
Q ss_pred eEEEEEEEECCCCcEEEEEEEEeeCCCCCC---CCCCCChH
Q 030292 96 QRTTADVSLVDTADKLQVQTYVWTNKNDPN---LYGDWDFE 133 (180)
Q Consensus 96 ~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~---~~~~W~~~ 133 (180)
+|+.|++ .+ | +||+|+++...... .+++|...
T Consensus 77 ~R~~v~~--~~-g---~a~vY~~~~~~~~~~~i~~GdW~~~ 111 (121)
T 1xhs_A 77 ARQLIQT--PY-G---SAWMYVYQRPVDGLKLIESGDWLDR 111 (121)
T ss_dssp EEEEEEE--TT-E---EEEEEEECSCCTTCEEESSCCSSCT
T ss_pred EEEEEEc--CC-C---EEEEEEECCccCCCCCccCCcCccc
Confidence 9998883 44 3 89999998876543 78999753
No 4
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=99.88 E-value=1.1e-22 Score=152.54 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=89.8
Q ss_pred CeeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccCCCCeeEEEECCCCeEEEEEEeecCHHHHHHHHHhc-ccC
Q 030292 16 HKHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIKGRVYPAILPVENKHVTGRVLFGISDPELLVLDEFE-DFE 94 (180)
Q Consensus 16 ~~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD~~E-g~~ 94 (180)
.++.+|||||||.++.|+.++.+...+++|.+.||+++ +. .||+|++++|. |.|+|| .+++++|++||.|| +..
T Consensus 6 ~~~~vFVYGTL~~g~~n~~~l~~a~~~g~a~l~gy~L~-~g--~yP~lv~~~g~-V~Gev~-~v~~~~l~~LD~~E~~~~ 80 (124)
T 1v30_A 6 KSVRIAVYGTLRKGKPLHWYLKGAKFLGEDWIEGYQLY-FE--YLPYAVKGKGK-LKVEVY-EVDKETFERINEIEIGTG 80 (124)
T ss_dssp -CEEEEECSTTSTTSTTGGGGTTSEEEEEEEEEEEEEE-ES--SSEEEEEEEEE-EEEEEE-EECHHHHHHHTTCGGGGG
T ss_pred CccEEEEECCCCCchHhHHhcCCCcEEEEEEEeeEEEE-EC--CCCEEEecCCE-EEEEEE-EECHHHHHHhhhccCCCC
Confidence 46789999999999999999988777899999999999 53 39999997665 999999 59999999999999 789
Q ss_pred CeEEEEEEEECCCCcEEEEEEEEeeCCCCC--CCCCCCCh
Q 030292 95 YQRTTADVSLVDTADKLQVQTYVWTNKNDP--NLYGDWDF 132 (180)
Q Consensus 95 Y~R~~v~V~~~dgg~~~~A~vYv~~~~~~~--~~~~~W~~ 132 (180)
|+|+.| .+.+ |+ ||+|+++..... +.+++|..
T Consensus 81 Y~R~~V--~~~~-g~---A~vY~~~~~~~~~~I~sGdW~~ 114 (124)
T 1v30_A 81 YRLVEV--STKF-GK---AFLWEWGSKPRGKRIKSGDFDE 114 (124)
T ss_dssp EEEEEE--CCTT-SC---EEEEEECSCCCSEECTTSCTTH
T ss_pred eEEEEE--EcCC-CE---EEEEEeCCccCCCCccCCccch
Confidence 999974 4656 43 999999876654 37889965
No 5
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.85 E-value=4.4e-21 Score=152.61 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=110.9
Q ss_pred CCeeeEEEcCCCCCCchhHhHhhCCCceeeEEEcCeEEEccC---------CCCeeEEEECCCCeEEEEEEeecCHHHHH
Q 030292 15 NHKHNVFVYGSLLADDVVRVLLKRIPQSSSAILPGYRRFSIK---------GRVYPAILPVENKHVTGRVLFGISDPELL 85 (180)
Q Consensus 15 ~~~~~vFvYGTLm~~~~l~~~l~~~~~~~~A~L~Gy~l~~~~---------~~~yP~lv~~~g~~V~G~ly~~lt~~~l~ 85 (180)
..++++|+|||||++..++..+.......+|+|+||++.+.. .++||+|++++|+.|+|+|| .|++++++
T Consensus 14 ~~~~~~FaYGSlm~~~~~~~~~~~~~~~~~a~l~gy~l~f~~~~~~~~~~~~g~~~~lv~~~g~~V~G~ly-~v~~~~l~ 92 (188)
T 3cry_A 14 EESFLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKTSQTWHGGIATIFQSPGDEVWGVVW-KMNKSNLN 92 (188)
T ss_dssp CCEEEEEECSGGGSHHHHHHHCTTCEEEEEEEEEEEEEEEEEETTCCCTTTSSCEEEEEEEEEEEEEEEEE-EEEGGGHH
T ss_pred CCCEEEEEEccCCCHHHHHhhCCCCceEEEEEEcCEEEEECCCCCCCcCCCCCeeEeEEeCCCCEEEEEEE-EECHHHHH
Confidence 457899999999999999877766667889999999996543 24799999999999999999 69999999
Q ss_pred HHHHhcc---cCCeEEEEEEEECCCCcEEEEEEEEeeCCCCCCCCCCCChHHHHHHhHHHHHHHHHHHHHhhc-----CC
Q 030292 86 VLDEFED---FEYQRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLHMKDFVKMTAGFVEELE-----LP 157 (180)
Q Consensus 86 ~LD~~Eg---~~Y~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~m~~~~-----~~ 157 (180)
.||.+|+ ..|+|+.|+|.+.+ |+.+.||+|++++... .....+.++...+.-.+ ...-.+|..++. ..
T Consensus 93 ~LD~~Eg~~~g~Y~r~~v~V~~~~-g~~~~a~vYv~~~~~~-~~ps~~Yl~~i~~g~~~--~gl~~~y~~~L~~~~~~g~ 168 (188)
T 3cry_A 93 SLDEQQGVKSGMYVVIEVKVATQE-GKEITCRSYLMTNYES-APPSPQYKKIICMGAKE--NGLPLEYQEKLKAIEPNDY 168 (188)
T ss_dssp HHHHHTTGGGTSCEEEEEEEEETT-CCEEEEEEEECSSEEE-CCCCHHHHHHHHHHHHH--TTCCHHHHHHHHTCCCCCC
T ss_pred HHHHHhCCCCCcEEEEEEEEEeCC-CCEEEEEEEEecCCCC-CCChHHHHHHHHHHHHH--hCcCHHHHHHHhcccccCC
Confidence 9999998 28999999999988 6889999999976532 23333444444332221 001122333332 22
Q ss_pred CCChhHHHHHHHhhcCCC
Q 030292 158 EAKPRVAAYESFYQQNAD 175 (180)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~ 175 (180)
.+ +.+++|...+.....
T Consensus 169 ~~-p~~~~~~~~~~~~~~ 185 (188)
T 3cry_A 169 TG-KVSEEIEDIIKKGET 185 (188)
T ss_dssp CS-CCCHHHHHHHHC---
T ss_pred CC-CCcHHHHHHHHhhhc
Confidence 33 466788877765443
No 6
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=99.84 E-value=6.5e-21 Score=147.76 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=83.2
Q ss_pred eeeEEEcCCCCCCchhHhHhhCC-----CceeeEEEc-CeEEEccCCCCeeEEEECC--CCeEEEEEEeecCHHHHHHHH
Q 030292 17 KHNVFVYGSLLADDVVRVLLKRI-----PQSSSAILP-GYRRFSIKGRVYPAILPVE--NKHVTGRVLFGISDPELLVLD 88 (180)
Q Consensus 17 ~~~vFvYGTLm~~~~l~~~l~~~-----~~~~~A~L~-Gy~l~~~~~~~yP~lv~~~--g~~V~G~ly~~lt~~~l~~LD 88 (180)
|.+||||||||.++.|+.++... ..++.+.+. +|.+.......+|.++..+ |+.|.|+|| .+++++|++||
T Consensus 1 M~~vFVYGTL~~G~~Nh~~l~~~~~~~A~~~G~~~t~~~Ypl~~~g~~~~P~l~~~p~~g~~V~G~ly-~v~~~~l~~LD 79 (153)
T 3jud_A 1 MALVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVY-AVDERMLRFLD 79 (153)
T ss_dssp CEEEEECSTTSTTSTTGGGGTCGGGCCEEEEEEEEESSCBCEEEETTTTEEEEBSCTTSSBCCEEEEE-EECHHHHHHHH
T ss_pred CCEEEEeCCCCCCCcChHHHhcCcCCCeEEEEEEEeCCCccEEEecCCCCceEEecCCCCCEEEEEEE-EECHHHHHHHH
Confidence 56899999999999999887642 234445444 5666544434577776655 568999999 59999999999
Q ss_pred Hhcc--cCCeEEEEEEEECC----------CCcEEEEEEEEeeCCCCC
Q 030292 89 EFED--FEYQRTTADVSLVD----------TADKLQVQTYVWTNKNDP 124 (180)
Q Consensus 89 ~~Eg--~~Y~R~~v~V~~~d----------gg~~~~A~vYv~~~~~~~ 124 (180)
+||+ ..|+|+.|+|.+.+ .|+.++||+|+++.....
T Consensus 80 ~~Eg~~~~Y~R~~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~~~~~ 127 (153)
T 3jud_A 80 DFQSCPALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATFPPE 127 (153)
T ss_dssp HHTTTTTSCEEEEEEEEEEC------CCSCCCCEEEEEEEEBCCCCGG
T ss_pred HhcCCCCceEEEEEEEEeeccccccccccCCCCEEEEEEEEcCCCCcc
Confidence 9999 79999999999862 268899999999765543
No 7
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=99.84 E-value=7.1e-21 Score=148.63 Aligned_cols=116 Identities=24% Similarity=0.324 Sum_probs=90.3
Q ss_pred CCeeeEEEcCCCCCCchhHhHhhC-----CCceeeE-EEcCeEEEccCCCCeeEEE--ECCCCeEEEEEEeecCHHHHHH
Q 030292 15 NHKHNVFVYGSLLADDVVRVLLKR-----IPQSSSA-ILPGYRRFSIKGRVYPAIL--PVENKHVTGRVLFGISDPELLV 86 (180)
Q Consensus 15 ~~~~~vFvYGTLm~~~~l~~~l~~-----~~~~~~A-~L~Gy~l~~~~~~~yP~lv--~~~g~~V~G~ly~~lt~~~l~~ 86 (180)
-.++.||||||||.++.|+.++.. +..++.+ ++.||++.+....++|.+. |++|+.|.|+|| .+++++|+.
T Consensus 11 ~~~~~vFVYGTLk~G~~Nh~~l~~~r~~~A~~~G~~~tl~~YpL~~~g~~~~p~~~i~p~~g~~V~Gevy-~v~~~~L~~ 89 (161)
T 1vkb_A 11 HHMAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGEHNIPWLLYLPGKGHCVTGEIY-EVDEQMLRF 89 (161)
T ss_dssp CCCEEEEECSTTSTTSTTTHHHHCGGGCCEEEEEEEEESSCBCEEEETTTTEEEEESCTTSSBCCEEEEE-EECHHHHHH
T ss_pred ccceEEEEcCCCCCCCcChHHHhhCcCCCceEEEEEeecCCceEEEecCCCcceeEeecCCCCEEEEEEE-EECHHHHHH
Confidence 367889999999999999987764 2345666 6778888765544577655 456779999999 699999999
Q ss_pred HHHhcc--cCCeEEEEEEEE-------CCCCcEEEEEEEEeeCCCCCCCCCCCChH
Q 030292 87 LDEFED--FEYQRTTADVSL-------VDTADKLQVQTYVWTNKNDPNLYGDWDFE 133 (180)
Q Consensus 87 LD~~Eg--~~Y~R~~v~V~~-------~dgg~~~~A~vYv~~~~~~~~~~~~W~~~ 133 (180)
||.||+ ..|+|+.|+|.+ .+ |+.+.||+|+++... ......|.++
T Consensus 90 LD~~Eg~p~~Y~R~~v~V~~~~~~~~~~~-g~~v~A~vYv~~~~~-~~lps~~Yl~ 143 (161)
T 1vkb_A 90 LDDFEDCPSMYQRTALQVQVLEWEGDGDP-GDSVQCFVYTTATYA-PEWLFLPYHE 143 (161)
T ss_dssp HHHHTTTTTSCEEEEEEEEEEEEC----C-CSEEEEEEEEESCCC-GGGGGSCCCS
T ss_pred HHHhcCCCCceEEEEEEEEecccccccCC-CCEEEEEEEEcCCCC-ccCCChhHHH
Confidence 999998 799999999987 45 688999999998543 2234455544
No 8
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.78 E-value=1.2e-18 Score=146.82 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=87.8
Q ss_pred eeeEEEcCCCCCCchhHhHhhCCCc-eeeEEEcCeEEEccCCCCeeEEEEC--CCCeEEEEEEeecCHHHHHHHHHhcc-
Q 030292 17 KHNVFVYGSLLADDVVRVLLKRIPQ-SSSAILPGYRRFSIKGRVYPAILPV--ENKHVTGRVLFGISDPELLVLDEFED- 92 (180)
Q Consensus 17 ~~~vFvYGTLm~~~~l~~~l~~~~~-~~~A~L~Gy~l~~~~~~~yP~lv~~--~g~~V~G~ly~~lt~~~l~~LD~~Eg- 92 (180)
++.||||||||.++.|+.++.+... ..+|+++| +++... .||+|++. +++.|.|+|| .++++ .||.||+
T Consensus 2 ~~~vFVYGTL~~g~~n~~~l~~~~~~~~~~~~~g-~L~~~g--~~P~lv~~~~~~~~V~Gev~-~v~~~---~LD~~E~~ 74 (285)
T 2qik_A 2 NSLLFVYGTLRKHEKNHHLLAQSACINEQARTKG-SLFAAK--EGPTVVFNDEDEGYIYGEVY-EADEL---CIHKLDQF 74 (285)
T ss_dssp CEEEEECSTTSTTSTTGGGGTTCEEEEEEEEEES-EEEEC----CEEEECCTTCCSEEEEEEE-EECHH---HHHHHHHH
T ss_pred CcEEEEECCCCCCCcChHHhCCCeEeeeeEEEEE-EEEEcC--CCCeEEEccCCCCEEEEEEE-EcCHH---HhHHhcCC
Confidence 5689999999999999998877654 46889986 887654 47999987 4789999999 58876 9999999
Q ss_pred -cCCeEEEEEEEECCCCcEEEEEEEEeeCCCCC----CCCCCCChHHHHHH
Q 030292 93 -FEYQRTTADVSLVDTADKLQVQTYVWTNKNDP----NLYGDWDFEEWRRL 138 (180)
Q Consensus 93 -~~Y~R~~v~V~~~dgg~~~~A~vYv~~~~~~~----~~~~~W~~~~~~~~ 138 (180)
+.|+|+.|+|.+.+ | .++||+|++++.... +.+++|....+.++
T Consensus 75 ~~~Y~R~~v~v~~~~-g-~~~a~vY~~~~~~~~~~~~I~~GdW~~~~~~~~ 123 (285)
T 2qik_A 75 FQGYHKQTVFVETDV-G-IKIALIYFMNKDGCAGFTKISSGDWKEHQMISK 123 (285)
T ss_dssp STTCEEEEEEEEETT-E-EEEEEEEECC------CEECTTSCHHHHHHHHT
T ss_pred CCceeEEEEEEEcCC-C-EEEEEEEEeccccccCCCccCCCchhhhhhccc
Confidence 89999999999866 3 589999999876642 37788855444443
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.78 E-value=4.1e-18 Score=143.45 Aligned_cols=141 Identities=16% Similarity=0.122 Sum_probs=107.3
Q ss_pred CCeeeEEEcCCCCCCchhHhH-hhCC--CceeeEEEcCeEEEccC---CCCeeEEEECCCCeEEEEEEeecCHHHHHHHH
Q 030292 15 NHKHNVFVYGSLLADDVVRVL-LKRI--PQSSSAILPGYRRFSIK---GRVYPAILPVENKHVTGRVLFGISDPELLVLD 88 (180)
Q Consensus 15 ~~~~~vFvYGTLm~~~~l~~~-l~~~--~~~~~A~L~Gy~l~~~~---~~~yP~lv~~~g~~V~G~ly~~lt~~~l~~LD 88 (180)
..+.++|+|||||+...+... +... ..+.+|+|+||++.+.. ++++|+|+++ |+.|+|+|| .|++++++.||
T Consensus 125 ~~~~~yFaYGSnm~~~~~~~~~~p~~~~~~~~~a~L~G~~l~F~~~~~~~g~a~iv~~-g~~v~Gvly-~i~~~~l~~LD 202 (285)
T 2qik_A 125 KNPIYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFTLKREDGSRADMLED-GGTTEGVLY-RIPYSALSYLY 202 (285)
T ss_dssp CSSEEEEECSGGGSSHHHHHHTCGGGSSCEEEEEEEETCEEEEEEEETTEEEEEEECS-SCEEEEEEE-EECGGGHHHHH
T ss_pred CCcEEEEEechhcCHhhcccccCCcccceEeEEEEEeCeEEEcCcCCCCCeeeeEEEC-CCEEEEEEE-EECHHHHHHHH
Confidence 347899999999999999863 4433 44579999999998752 3579999999 999999999 69999999999
Q ss_pred Hhcc---cCCeEEEEEEEECCCCcEEEEEEEEeeCCCCCCCCCCCChHHHHHHh----HHHHHHHHHHHHHhhcCCC
Q 030292 89 EFED---FEYQRTTADVSLVDTADKLQVQTYVWTNKNDPNLYGDWDFEEWRRLH----MKDFVKMTAGFVEELELPE 158 (180)
Q Consensus 89 ~~Eg---~~Y~R~~v~V~~~dgg~~~~A~vYv~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~m~~~~~~~ 158 (180)
.+|+ ..|.|+.|+|.+.+ |+.++|++|++++......+..|.++.-.+.- .++|+......+.....+.
T Consensus 203 ~~Eg~~~g~Y~r~~v~v~~~~-g~~~~a~~Yv~~~~~~~~~Ps~~Yl~~i~~g~~~g~~~~Y~~~l~~~~~~~~~~~ 278 (285)
T 2qik_A 203 KREGVESLTYRPAFVDVEAGG-RHYKDCLTFLVLQKEAEIAPPQHYQIEIERGAELYLSPEFTEKLKRHMNSLPKGL 278 (285)
T ss_dssp HHTTTTTTSEEEEEEEEEETT-EEEEEEEEEEESSCCCCCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSCCC-
T ss_pred HhhCCCCCceEEEEEEEEECC-CCEEEEEEEEecCCCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhhhh
Confidence 9998 36999999999987 67899999999876544445556555544322 2455665555555555443
No 10
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=39.10 E-value=27 Score=23.42 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHhhcCCC
Q 030292 145 KMTAGFVEELELPEAKPRVAAYESFYQQNAD 175 (180)
Q Consensus 145 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 175 (180)
.+|..|..+.+-|.+ .+++|+.|+.+|..
T Consensus 43 ~aAqkFi~~n~Lp~~--yldqI~~FI~~N~~ 71 (80)
T 2k89_A 43 LTAYNFLQKNDLNPM--FLDQVAKFIIDNTK 71 (80)
T ss_dssp HHHHHHHHHHTCCTT--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHhCC
Confidence 356677788887766 99999999988754
No 11
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=32.36 E-value=46 Score=21.67 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHhhcCC
Q 030292 142 DFVKMTAGFVEELELPEAKPRVAAYESFYQQNA 174 (180)
Q Consensus 142 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 174 (180)
.|.++..+.+.....++| +++..|.+|+.++-
T Consensus 6 ~y~~MI~eAI~~lker~G-sS~~AIkKyI~~~y 37 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKG-SSRPALKKFIKENY 37 (78)
T ss_dssp CHHHHHHHHHHHHCCSSC-EEHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhccCCC-cCHHHHHHHHHHHC
Confidence 467788888899999999 99999999999873
No 12
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=21.86 E-value=68 Score=21.42 Aligned_cols=31 Identities=6% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHhhcC
Q 030292 142 DFVKMTAGFVEELELPEAKPRVAAYESFYQQN 173 (180)
Q Consensus 142 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 173 (180)
.|.++..+.+.....++| +++..|.+|+.++
T Consensus 9 ~y~~MI~eAI~alker~G-sS~~AIkKyI~~~ 39 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKG-SSRIVLKKYVKDT 39 (88)
T ss_dssp CHHHHHHHHHHHSCCTTS-BCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCC-cCHHHHHHHHHHh
Confidence 467788888899999999 9999999999876
Done!