BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030294
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
           Kappa At 1.95a Resolution
          Length = 313

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 99  QAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANY 155
           + Q  SW   ++D+N+A+   G   +   D S  I +P+ + P    ++ AN I  Y
Sbjct: 55  EGQSASWDVAKKDQNRAKNRYGN--IIAYDHSRVILQPVEDDPS-SDYINANYIDGY 108


>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
           6- Deoxyerthronolide B Synthase
 pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
           6- Deoxyerthronolide B Synthase
          Length = 915

 Score = 27.3 bits (59), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 14  LREKNLSWVDIFEEIPVKVSNSALIS-------AFMTELEPDTPVTQRDYDRLQLSSSPF 66
           +RE+   W D      V    S ++S       AF  +   +  +  RD D    S SP 
Sbjct: 674 VRERLRPWQDRLSVAAVNGPRSVVVSGEPGALRAFSEDCAAEG-IRVRDIDVDYASHSPQ 732

Query: 67  LERNMEFLIECMDDLSVEQQKFQFY----YRSLTRQQAQQQSWLQKRRD 111
           +ER  E L+E   D++    +  F+     RS+   +   + W +  R+
Sbjct: 733 IERVREELLETTGDIAPRPARVTFHSTVESRSMDGTELDARYWYRNLRE 781


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,250,542
Number of Sequences: 62578
Number of extensions: 200273
Number of successful extensions: 412
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)