Query 030294
Match_columns 179
No_of_seqs 110 out of 154
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1560 Translation initiation 100.0 3.6E-61 7.9E-66 410.8 14.1 177 1-178 158-336 (339)
2 cd08065 MPN_eIF3h Mpr1p, Pad1p 100.0 9.6E-40 2.1E-44 279.4 14.4 128 1-128 139-266 (266)
3 cd08069 MPN_RPN11_CSN5 Mov34/M 96.9 0.0011 2.5E-08 57.2 4.5 41 7-48 162-202 (268)
4 cd08064 MPN_eIF3f Mpr1p, Pad1p 83.5 3.4 7.4E-05 35.4 6.1 67 20-95 138-204 (265)
5 KOG4538 Predicted coiled-coil 60.5 63 0.0014 25.1 7.3 53 69-121 41-93 (130)
6 cd00225 API3 Ascaris pepsin in 55.2 73 0.0016 25.8 7.2 57 83-141 34-91 (159)
7 PF14198 TnpV: Transposon-enco 50.7 21 0.00046 27.0 3.3 33 139-171 38-70 (111)
8 PF09454 Vps23_core: Vps23 cor 38.5 1.1E+02 0.0023 21.0 5.0 40 67-106 24-63 (65)
9 PF04239 DUF421: Protein of un 29.4 9.7 0.00021 28.0 -1.4 27 3-29 11-37 (99)
10 KOG1459 Squalene synthetase [L 28.9 43 0.00093 30.9 2.3 28 150-177 159-186 (413)
11 PF06324 Pigment_DH: Pigment-d 28.6 40 0.00087 17.7 1.2 10 34-43 1-10 (18)
12 PF12196 hNIFK_binding: FHA Ki 27.7 37 0.0008 21.5 1.2 28 104-138 14-41 (41)
13 KOG3682 Predicted membrane pro 27.2 5.1E+02 0.011 26.2 9.3 86 65-161 626-713 (930)
14 KOG2150 CCR4-NOT transcription 22.0 3.2E+02 0.007 26.6 6.8 89 32-126 77-175 (575)
15 PF05761 5_nucleotid: 5' nucle 21.9 3.7E+02 0.0079 25.2 7.1 72 71-157 344-415 (448)
No 1
>KOG1560 consensus Translation initiation factor 3, subunit h (eIF-3h) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-61 Score=410.83 Aligned_cols=177 Identities=38% Similarity=0.650 Sum_probs=170.5
Q ss_pred CcccccCCCChHHHhhCCCCcccceeeecceeechHHHHHHHhhcC--CCCCCCcCcCcccCCCCChhHHHHHHHHHHHH
Q 030294 1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELE--PDTPVTQRDYDRLQLSSSPFLERNMEFLIECM 78 (179)
Q Consensus 1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~--~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~v 78 (179)
|++|++++||+|.|+++||||++||+||||+||||||+|++|++|+ .+.++..+.+..||||+...|+|+++.||++|
T Consensus 158 m~~~kekdwtpealk~~nltyenmfeElPIVIknS~L~nvlmseLs~~e~c~sdk~~~~~fdlgs~t~leknir~lme~v 237 (339)
T KOG1560|consen 158 MAAHKEKDWTPEALKSANLTYENMFEELPIVIKNSHLANVLMSELSEPEDCESDKPLHSNFDLGSGTRLEKNIRLLMERV 237 (339)
T ss_pred HHHHhcCCCCHHHHHhcCCCHHHHHhhcCeeeeccHHHHHHHHhccccccccccccccccccccchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999997 44556565689999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH
Q 030294 79 DDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQ 158 (179)
Q Consensus 79 D~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~ 158 (179)
|++++|++++++|||+++|||++++||++||++||+.|+++|+||||+|| |.|+||+|++|.|||++|+|+||+++|++
T Consensus 238 DEl~qe~~~l~kyqr~~~rqq~~~~q~~aKrqaENa~R~argep~lP~dd-~kr~fk~pq~p~rLdslLiS~qint~aq~ 316 (339)
T KOG1560|consen 238 DELHQEIVNLNKYQRQLARQQAKKHQWIAKRQAENANRAARGEPPLPEDD-WKRIFKPPQEPRRLDSLLISGQINTSAQQ 316 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCChHH-HHHHhcCCCchhHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhhhc
Q 030294 159 INGVTGQSFSRLYLTKALHD 178 (179)
Q Consensus 159 i~~~~~~~l~Klfl~~~l~~ 178 (179)
|..||+++|+|||+++++|.
T Consensus 317 ike~tSqnl~Klfiaea~~~ 336 (339)
T KOG1560|consen 317 IKEFTSQNLSKLFIAEALQE 336 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999985
No 2
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=100.00 E-value=9.6e-40 Score=279.43 Aligned_cols=128 Identities=58% Similarity=0.975 Sum_probs=122.8
Q ss_pred CcccccCCCChHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHHHHH
Q 030294 1 MDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDD 80 (179)
Q Consensus 1 m~~yk~~~ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~vD~ 80 (179)
|++|++|+|+.++++++++++.+||+||||+|+||+|+++||++|.+..+...++|++|+|+++++|+++|++|+++||+
T Consensus 139 ~~~~~~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~~~~~~~~l~l~~~~~le~~l~~l~~~id~ 218 (266)
T cd08065 139 MELYKEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPSSQSDFDRLDLSTNSFLEKNLELLMESVDE 218 (266)
T ss_pred HHHhhcCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCcccCCcccccccCchhHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999987766655699999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCC
Q 030294 81 LSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 128 (179)
Q Consensus 81 l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed 128 (179)
|++|++||++|||+++|||++++||++|||+||++|+++|++|||+||
T Consensus 219 l~~e~~~~~~y~r~~~~~~~~~~~~~~kr~~en~~r~~~~~~~lp~~~ 266 (266)
T cd08065 219 LSQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREARGEEPLPEED 266 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999975
No 3
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=96.93 E-value=0.0011 Score=57.20 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=38.4
Q ss_pred CCCChHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCC
Q 030294 7 NNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPD 48 (179)
Q Consensus 7 ~~ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~~~ 48 (179)
|.|+.++++ ..+++.++|.||||.|+||+|.+++|..|...
T Consensus 162 ~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~ 202 (268)
T cd08069 162 GHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNK 202 (268)
T ss_pred CccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHHH
Confidence 789999999 99999999999999999999999999998543
No 4
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f. Eukaryotic translation initiation factor 3 (eIF3) subunit F (eIF3F; EIF3S5; eIF3-p47; eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa; Mov34/MPN/PAD-1 family protein) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity. It has been shown that eIF3f mRNA expression is significantly decreased in many human tumors including pancreatic cancer and melanoma. EIF3f is a potent inhibitor of HIV-1 replication; it mediates restriction of HIV-1 expression through several factors including the serine/arginine-rich (SR) protein 9G8, and cyclin-dependent kinase 11 (CDK11). EIF3f phosphorylation by CDK11 is important in regulating its function in translation and ap
Probab=83.48 E-value=3.4 Score=35.41 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=41.9
Q ss_pred CcccceeeecceeechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 030294 20 SWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSL 95 (179)
Q Consensus 20 t~~~IfeEiPI~I~NS~Lv~~~L~eL~~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~~ 95 (179)
++..+|+|||++|+|+.-=..-+.-+......... ...+..+++.+..++-.|..-......|-+.+
T Consensus 138 ~~~~~F~~ip~~i~~~eaE~i~v~~l~~~~~~~~~---------~~~~~~~l~~~~~al~~L~~~l~~i~~Yl~~V 204 (265)
T cd08064 138 TLGSMFVPIPLELLYSEAERVALDLLAKTLASPSR---------SAPLTSDLEQLEASLEKLQEMLDRVLRYVEDV 204 (265)
T ss_pred CcceEEEEcceeeecCcHHHHHHHHHHhhccCCcc---------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998766666666433221110 11133566666666666655555555565553
No 5
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.47 E-value=63 Score=25.06 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCC
Q 030294 69 RNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGE 121 (179)
Q Consensus 69 k~l~~l~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge 121 (179)
+.+..--+-=-++.+|-.-.-.+++.+.-.+-+-.+-...|+.||+.|+..+|
T Consensus 41 k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqRrvEn~kRRLeNE 93 (130)
T KOG4538|consen 41 KTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQRRVENEKRRLENE 93 (130)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444455566666666667777766655555666778889988887765
No 6
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=55.24 E-value=73 Score=25.79 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCC-CCCCCCCCCCCCCCCCCCCc
Q 030294 83 VEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGE-EPLPEEDPSNPIFKPIPEPP 141 (179)
Q Consensus 83 ~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge-~plPeed~~~~~fK~~~ePS 141 (179)
.||.-|+.|+.+++.-+....+-+..|+.-=..|++ |. ..+..-. ..++=|+|..||
T Consensus 34 ~Eq~el~~y~~d~~~yK~~~k~~l~er~~~~~~~~~-~~~~~~~~~~-~~~~Pk~PkkPs 91 (159)
T cd00225 34 DEQQELAQYVEDVADYKEEVKQALKERQEGLKLRRA-GKKKKAVTLA-EEKLPKAPKKPS 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-cccccccccc-cccCCCCCCCCC
Confidence 357788889988888877777666665543333333 43 1121111 112447777776
No 7
>PF14198 TnpV: Transposon-encoded protein TnpV
Probab=50.71 E-value=21 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=28.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 030294 139 EPPRLESFLIANRIANYCNQINGVTGQSFSRLY 171 (179)
Q Consensus 139 ePSRL~slL~s~Qi~~yc~~i~~~~~~~l~Klf 171 (179)
-|.+...|+++|.+..||.+|+.-|.+-+-.+.
T Consensus 38 ~p~~Y~~ll~~g~L~~~l~eid~~A~e~~e~l~ 70 (111)
T PF14198_consen 38 KPILYNNLLLSGKLNEHLAEIDEQAQERFERLV 70 (111)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999988776653
No 8
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.47 E-value=1.1e+02 Score=21.01 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030294 67 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWL 106 (179)
Q Consensus 67 Lek~l~~l~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~ 106 (179)
++..+..|-.++..=+-.-..|-+.-|.++|+|--.-..+
T Consensus 24 ieDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral~ 63 (65)
T PF09454_consen 24 IEDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRALI 63 (65)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777777666677889999999999987554443
No 9
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=29.39 E-value=9.7 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=21.4
Q ss_pred ccccCCCChHHHhhCCCCcccceeeec
Q 030294 3 LYRSNNFTGEKLREKNLSWVDIFEEIP 29 (179)
Q Consensus 3 ~yk~~~ft~e~l~~~~Lt~~~IfeEiP 29 (179)
++++|++..++|+++++|.++++..+=
T Consensus 11 Li~dG~i~~~~l~~~~it~~dl~~~LR 37 (99)
T PF04239_consen 11 LIRDGKIDEDNLRRARITEEDLLSALR 37 (99)
T ss_dssp EEETTEE-HHHHHHTT--HHHHHHHHH
T ss_pred EEECCEECHHHHhHcCCCHHHHHHHHH
Confidence 688999999999999999999988764
No 10
>KOG1459 consensus Squalene synthetase [Lipid transport and metabolism]
Probab=28.92 E-value=43 Score=30.87 Aligned_cols=28 Identities=29% Similarity=0.589 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q 030294 150 NRIANYCNQINGVTGQSFSRLYLTKALH 177 (179)
Q Consensus 150 ~Qi~~yc~~i~~~~~~~l~Klfl~~~l~ 177 (179)
-.++.||.-+++..|-+++|+|.+.++.
T Consensus 159 ~d~d~yChyvagLVg~glsrlf~~s~le 186 (413)
T KOG1459|consen 159 WDYDVYCHYVAGLVGIGLSRLFTASKLE 186 (413)
T ss_pred HHHHHHHHHHHHhhCCchHhhhhHHHHh
Confidence 4689999999999999999999987763
No 11
>PF06324 Pigment_DH: Pigment-dispersing hormone (PDH); InterPro: IPR009396 This family consists of several eukaryotic pigment-dispersing hormone (PDH) proteins. The pigment-dispersing hormone (PDH) is produced in the eyestalks of Crustacea where it induces light-adapting movements of pigment in the compound eye and regulates the pigment dispersion in the chromatophores [].; GO: 0005179 hormone activity, 0009416 response to light stimulus, 0005576 extracellular region
Probab=28.58 E-value=40 Score=17.73 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=8.0
Q ss_pred chHHHHHHHh
Q 030294 34 NSALISAFMT 43 (179)
Q Consensus 34 NS~Lv~~~L~ 43 (179)
||.|+|++|.
T Consensus 1 NselINslLg 10 (18)
T PF06324_consen 1 NSELINSLLG 10 (18)
T ss_pred ChHHHHHHHc
Confidence 7888888875
No 12
>PF12196 hNIFK_binding: FHA Ki67 binding domain of hNIFK; InterPro: IPR021043 This entry represents eukaryotic proteins that contain a domain of approximately 40 amino acids in length. These proteins are found in association with PF00076 from PFAM. There are two conserved sequence motifs: TPVCTP and LERRKS. This domain is found on the human nucleolar protein hNIFK. It binds to the fork-head-associated domain of human Ki67. High-affinity binding requires sequential phosphorylation by two kinases, CDK1 and GSK3, yielding pThr238, pThr234 and pSer230. This interaction is involved in cell cycle regulation []. ; PDB: 2AFF_B.
Probab=27.67 E-value=37 Score=21.52 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=14.0
Q ss_pred HHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCC
Q 030294 104 SWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIP 138 (179)
Q Consensus 104 ~~~~kRk~EN~~R~~~ge~plPeed~~~~~fK~~~ 138 (179)
.+++|||-|-+.---. .++|++ +||.|.
T Consensus 14 tfLErRKS~~~emndD-----d~D~EI--v~K~P~ 41 (41)
T PF12196_consen 14 TFLERRKSEVAEMNDD-----DEDDEI--VFKQPV 41 (41)
T ss_dssp HHHHHHHHHHHH--GG-----GGS-SE--EESS--
T ss_pred HHHHHhhhhhhcccCC-----CcCCee--EeccCC
Confidence 4788888776543111 133444 788763
No 13
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=27.20 E-value=5.1e+02 Score=26.24 Aligned_cols=86 Identities=20% Similarity=0.348 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcC--CCCCCCCCCCCCCCCCCCCCcc
Q 030294 65 PFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAG--EEPLPEEDPSNPIFKPIPEPPR 142 (179)
Q Consensus 65 ~~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~g--e~plPeed~~~~~fK~~~ePSR 142 (179)
.-+|++|+++.+|=++++--++-....-+.+.+-- ...-+.-||.-|=.|.=-. +-.+|--- .+-.|
T Consensus 626 ~~~eq~L~f~vecRe~f~~~~~~li~LI~S~n~la--~~t~K~gkK~a~Fvr~Cia~~~~TIPSv~---------~p~~r 694 (930)
T KOG3682|consen 626 TNLEQCLEFIVECREDFGLRQNSLIHLIESLNQLA--HRTQKSGKKKADFVRVCIANLSLTIPSVR---------DPSRR 694 (930)
T ss_pred ccHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHhheeccccc---------ChhhH
Confidence 55999999999999999888877777777665321 1112222333344443221 22223210 13346
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 030294 143 LESFLIANRIANYCNQING 161 (179)
Q Consensus 143 L~slL~s~Qi~~yc~~i~~ 161 (179)
|+-+|.++||.-.+.-|.+
T Consensus 695 lnlyl~~~qvaLl~~~lsq 713 (930)
T KOG3682|consen 695 LNLYLQNIQVALLANFLSQ 713 (930)
T ss_pred hhhhhHHhHHHHHhChhhh
Confidence 9999999999876665544
No 14
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=22.01 E-value=3.2e+02 Score=26.57 Aligned_cols=89 Identities=21% Similarity=0.375 Sum_probs=54.6
Q ss_pred eechHHHHHHHhhcCC-CCCCCcCcCcccCCCCChhH-------HHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHH
Q 030294 32 VSNSALISAFMTELEP-DTPVTQRDYDRLQLSSSPFL-------ERNMEFLIECMDDLSVEQQKFQF--YYRSLTRQQAQ 101 (179)
Q Consensus 32 I~NS~Lv~~~L~eL~~-~~~~~~~~~~~L~l~~~~~L-------ek~l~~l~~~vD~l~~Eq~k~~~--yqR~~~rqq~~ 101 (179)
+.|--||..-|-.... .-..-+--|+-.-|+...-| ...++.|..+||+|+.+...|.- |.|.+.|
T Consensus 77 ~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~er---- 152 (575)
T KOG2150|consen 77 LDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIER---- 152 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3455666666666510 00001113555556555443 25788888899999887777765 4444443
Q ss_pred HHHHHHHHHHhhHHHHHcCCCCCCC
Q 030294 102 QQSWLQKRRDENKARKAAGEEPLPE 126 (179)
Q Consensus 102 ~~~~~~kRk~EN~~R~~~ge~plPe 126 (179)
+.|. +++.|+.-|....++..|+
T Consensus 153 -h~~H-~~~lEliLr~L~N~E~~pe 175 (575)
T KOG2150|consen 153 -HRWH-QQKLELILRLLDNDELDPE 175 (575)
T ss_pred -HHHH-HHHHHHHHHHhhccccCHH
Confidence 3443 5778999999999888776
No 15
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=21.90 E-value=3.7e+02 Score=25.16 Aligned_cols=72 Identities=18% Similarity=0.288 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 030294 71 MEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIAN 150 (179)
Q Consensus 71 l~~l~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed~~~~~fK~~~ePSRL~slL~s~ 150 (179)
|..|...++++... --..|..++.++.+.+|.+.|+. .|.+.++. .. ..|..+||.-..||+. +.
T Consensus 344 l~~L~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-fn--~~~GslfRtg~~~s~F-----a~ 408 (448)
T PF05761_consen 344 LQELEELLEELQDH----LDQLRSSSELRPDISELRKERRE---LRREMKEL-FN--PQFGSLFRTGHNPSYF-----AR 408 (448)
T ss_dssp HHHHHHHCHHHHCH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCT-T---TTT-BSSEETTEEBHH-----HH
T ss_pred HHHHHHHHHHHHHH----hcccccchhhHHHHHHHHHHHHH---HHHHHhhh-cc--cchHHHHhcCCCccHH-----HH
Confidence 44444444444332 22234778888899999988864 22233221 11 1377899999999986 56
Q ss_pred HHHHHHH
Q 030294 151 RIANYCN 157 (179)
Q Consensus 151 Qi~~yc~ 157 (179)
||..||+
T Consensus 409 qv~RyAd 415 (448)
T PF05761_consen 409 QVERYAD 415 (448)
T ss_dssp HHHHH-S
T ss_pred HHHHHhh
Confidence 7777664
Done!