Query 030294
Match_columns 179
No_of_seqs 110 out of 154
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 90.3 0.44 1.5E-05 40.7 5.8 126 9-164 180-305 (306)
2 4b4t_U RPN8, 26S proteasome re 62.4 1.6 5.5E-05 37.5 0.0 59 66-127 273-331 (338)
3 1f32_A Major pepsin inhibitor 53.5 12 0.00041 28.8 3.5 34 82-115 98-131 (149)
4 2f6m_A Suppressor protein STP2 31.9 84 0.0029 20.8 4.7 42 67-108 18-59 (65)
5 3iot_A Maltose-binding protein 25.1 57 0.0019 27.6 3.7 34 77-111 360-393 (449)
6 3ogl_Q JAZ1 incomplete degron 21.2 58 0.002 17.0 1.8 12 100-111 8-19 (21)
7 3plv_C 66 kDa U4/U6.U5 small n 19.4 66 0.0023 16.7 1.8 14 112-125 7-20 (21)
8 1sse_A AP-1 like transcription 18.5 17 0.0006 21.3 -0.7 14 151-164 20-33 (35)
9 3ogk_Q JAZ1 incomplete degron 18.2 68 0.0023 16.9 1.7 12 100-111 3-14 (22)
10 3c6f_A YETF protein; uncharact 16.5 20 0.00069 27.4 -1.0 26 3-28 19-44 (153)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.44 Score=40.66 Aligned_cols=126 Identities=10% Similarity=0.125 Sum_probs=59.3
Q ss_pred CChHHHhhCCCCcccceeeecceeechHHHHHHHhhcCCCCCCCcCcCcccCCCCChhHHHHHHHHHHHHHHhHHHHHHH
Q 030294 9 FTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKF 88 (179)
Q Consensus 9 ft~e~l~~~~Lt~~~IfeEiPI~I~NS~Lv~~~L~eL~~~~~~~~~~~~~L~l~~~~~Lek~l~~l~~~vD~l~~Eq~k~ 88 (179)
+....+...+..+...|.++||.++.|.|-..+|..|...... . .|+..++ .++++...+++.++.. ..
T Consensus 180 ~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~-----~--~l~~~~~-~~~~~~~~~~i~~m~~---~~ 248 (306)
T 4b4t_V 180 LNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQ-----S--GLKMYDY-EEKEESNLAATKSMVK---IA 248 (306)
T ss_dssp ----------------CEEECSCCCCCSSCTHHHHHHHHC-----------------C-HHHHHHHHHHHHHHSS---CH
T ss_pred cCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccc-----c--ccccCcH-HHHHHHHHHHHHHHHH---HH
Confidence 3444555566777889999999999999999999888543211 1 1233332 3445555555555533 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhHH
Q 030294 89 QFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSNPIFKPIPEPPRLESFLIANRIANYCNQINGVTG 164 (179)
Q Consensus 89 ~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPeed~~~~~fK~~~ePSRL~slL~s~Qi~~yc~~i~~~~~ 164 (179)
..|.+.+..++..-..++.. +. .+.-|+. + .-....+.|+.++-++.+|-.|+..+.
T Consensus 249 ~~y~k~v~~e~~~~~~~l~~--------~~-----vgk~dp~-~-----~l~~~~~~l~~~ni~~~l~~~~~~~~~ 305 (306)
T 4b4t_V 249 EQYSKRIEEEKELTEEELKT--------RY-----VGRQDPK-K-----HLSETADETLENNIVSVLTAGVNSVAI 305 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TC-----SCSSCCS-S-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCHHHHHh--------hc-----cCccChH-H-----HHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 34555555444332222210 00 1111210 0 012345889999999999999998764
No 2
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.38 E-value=1.6 Score=37.53 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCCCCCC
Q 030294 66 FLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEE 127 (179)
Q Consensus 66 ~Lek~l~~l~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~R~~~ge~plPee 127 (179)
.|--+|-.|+.++-.|+.-.+|..+++|. ++.+...|..|++.+++.+...+++..|..
T Consensus 273 Lmv~YLs~L~rs~~al~eli~nk~~~~~~---~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 331 (338)
T 4b4t_U 273 LMVIYISNLVRSIIAFDDLIENKIQNKKI---QEQRVKDKQSKVSDDSESESGDKEATAPLI 331 (338)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhcccccccccccccccccCCcc
Confidence 35567778889999999988888765554 566778899999999999988888766643
No 3
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=53.46 E-value=12 Score=28.82 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 030294 82 SVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKA 115 (179)
Q Consensus 82 ~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~EN~~ 115 (179)
..|+..+..|...++--+.+.+.|..+|.-++.+
T Consensus 98 ~~Eq~EL~~y~~k~~a~eer~e~~~~~~~~~k~~ 131 (149)
T 1f32_A 98 AKDHAEVQTFREKIAAFEEQQENQPPSSGMPHGA 131 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCCC
Confidence 4577777888887775555566666666554443
No 4
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.89 E-value=84 Score=20.81 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030294 67 LERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQK 108 (179)
Q Consensus 67 Lek~l~~l~~~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~~k 108 (179)
+|..+..|-++++.=.-+..-|-+.-|.++|+|--+-..++|
T Consensus 18 ieDaiy~L~~aL~~g~I~l~~ylK~vR~LaReQF~~Rali~K 59 (65)
T 2f6m_A 18 LTDTIEALSRMLHRGTIPLDTFVKQGRELARQQFLVRWHIQR 59 (65)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677776666666778999999999998766655554
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=25.13 E-value=57 Score=27.61 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030294 77 CMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRD 111 (179)
Q Consensus 77 ~vD~l~~Eq~k~~~yqR~~~rqq~~~~~~~~kRk~ 111 (179)
.++++..+......+. .+.++|+..+||+++..+
T Consensus 360 al~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~ 393 (449)
T 3iot_A 360 ALAAAQTNAAAMATLE-KLMKAFESLKSFQQQQQQ 393 (449)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhhhH-HHHHHHHHHHhhcccccc
Confidence 3444444444433332 224444444455444333
No 6
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=21.19 E-value=58 Score=17.05 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHH
Q 030294 100 AQQQSWLQKRRD 111 (179)
Q Consensus 100 ~~~~~~~~kRk~ 111 (179)
+-.++|++|||.
T Consensus 8 ~SLqRFleKRk~ 19 (21)
T 3ogl_Q 8 ASLHRFLEKRKD 19 (26)
T ss_pred HHHHHHHHHhhc
Confidence 457889999984
No 7
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=19.43 E-value=66 Score=16.75 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.5
Q ss_pred hhHHHHHcCCCCCC
Q 030294 112 ENKARKAAGEEPLP 125 (179)
Q Consensus 112 EN~~R~~~ge~plP 125 (179)
-|.-|.+.|..|+|
T Consensus 7 tnk~r~~lGLkplp 20 (21)
T 3plv_C 7 TNELRASLGLKLIP 20 (26)
T ss_dssp HHHHHHHTTCCCCC
T ss_pred HHHHHHHcCCCCCC
Confidence 47788999988877
No 8
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=18.50 E-value=17 Score=21.34 Aligned_cols=14 Identities=29% Similarity=0.961 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHH
Q 030294 151 RIANYCNQINGVTG 164 (179)
Q Consensus 151 Qi~~yc~~i~~~~~ 164 (179)
||+.+|..+++.||
T Consensus 20 qV~~FC~kln~aCG 33 (35)
T 1sse_A 20 QVSEFCSKMNQVCG 33 (35)
T ss_dssp SSSHHHHHHHHTTS
T ss_pred HhhHHHHHHHHHhc
Confidence 67788888888776
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=18.18 E-value=68 Score=16.94 Aligned_cols=12 Identities=42% Similarity=0.739 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q 030294 100 AQQQSWLQKRRD 111 (179)
Q Consensus 100 ~~~~~~~~kRk~ 111 (179)
+-.++|++|||.
T Consensus 3 ~SLqRFleKRk~ 14 (22)
T 3ogk_Q 3 ASLHRFLEKRKD 14 (26)
T ss_pred hhHHHHHHHHHH
Confidence 346789999985
No 10
>3c6f_A YETF protein; uncharacterized protein, predicted membrane protein, protein structure initiative, PSI-2; 2.50A {Bacillus subtilis}
Probab=16.51 E-value=20 Score=27.38 Aligned_cols=26 Identities=4% Similarity=0.187 Sum_probs=23.1
Q ss_pred ccccCCCChHHHhhCCCCcccceeee
Q 030294 3 LYRSNNFTGEKLREKNLSWVDIFEEI 28 (179)
Q Consensus 3 ~yk~~~ft~e~l~~~~Lt~~~IfeEi 28 (179)
+.++|++..+++++.++|..+++..+
T Consensus 19 LI~~G~i~~~~l~k~rit~~dL~~~L 44 (153)
T 3c6f_A 19 VIRKGELQYKVMKKNKIDINQLQSML 44 (153)
T ss_dssp EEETTEECHHHHHHTTCCHHHHHHHH
T ss_pred EEECCEEcHHHHhHcCCCHHHHHHHH
Confidence 56899999999999999999987765
Done!