BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030295
(179 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224053296|ref|XP_002297750.1| predicted protein [Populus trichocarpa]
gi|222845008|gb|EEE82555.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 98/162 (60%), Positives = 125/162 (77%), Gaps = 10/162 (6%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
GS ESYRY++SRRTVL+ML DRGY V +SEL RSLTEFR FG+ DL+SLR + LRS
Sbjct: 32 GSAESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSI 91
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE 141
P KK LV++LGT+EI+T IR +YGQILNKE+LHGLILILQS MN FA+KE+ KFPFKVE
Sbjct: 92 PHKKTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFPFKVE 151
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H+LQP+ ++L+A ++ ++M KYK+E KQ+
Sbjct: 152 VFQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQL 193
>gi|359487223|ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 131/187 (70%), Gaps = 15/187 (8%)
Query: 2 GGSGGGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRF 61
GS G G CIT ME G S+ESYRY+LSRRT+ QML+DRGY VP+SELTRSL++FR
Sbjct: 5 AGSHGNGSCITAD---MEQG-SIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRA 60
Query: 62 TFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILIL 121
+FG D LR+CLPL S+PSKK+LVV+ GT+EIR IR ++ QI N+E LH LIL+L
Sbjct: 61 SFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVL 119
Query: 122 QSNMNTFARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGK 171
QS MN+ ARK V ++P KVE F H+ PKHE+LSA E+ KL+ KYK+E K
Sbjct: 120 QSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDK 179
Query: 172 QVTILVK 178
Q I+ K
Sbjct: 180 QFPIMQK 186
>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 131/188 (69%), Gaps = 15/188 (7%)
Query: 2 GGSGGGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRF 61
GS G G CIT ME G S+ESYRY+LSRRT+ QML+DRGY VP+SELTRSL++FR
Sbjct: 515 AGSHGNGSCITAD---MEQG-SIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRA 570
Query: 62 TFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILIL 121
+FG D LR+CLPL S+PSKK+LVV+ GT+EIR IR ++ QI N+E LH LIL+L
Sbjct: 571 SFGHNPDPSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVL 629
Query: 122 QSNMNTFARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGK 171
QS MN+ ARK V ++P KVE F H+ PKHE+LSA E+ KL+ KYK+E K
Sbjct: 630 QSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDK 689
Query: 172 QVTILVKQ 179
Q I+ K
Sbjct: 690 QFPIMQKD 697
>gi|255544029|ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 239
Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 122/175 (69%), Gaps = 14/175 (8%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
EC+T+ SLES RY+LSR+TV++ML DRGY V +SELT S TEF FGD D
Sbjct: 29 ECLTK----FVEQASLESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPD 84
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+ LR+ L S+P KKM+VV++GTEEI+ IRGL QI NKE+L+GLILILQS MN +
Sbjct: 85 ILKLRISASLHSHPDKKMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHY 144
Query: 129 ARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
ARKE+ +FP KVEIF+ H+L+P+HEVL+A ++ +L+ K+ E KQ+
Sbjct: 145 ARKELGQFPSKVEIFHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQL 199
>gi|15232524|ref|NP_191013.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
gi|7258352|emb|CAB77569.1| RNA polymerase 24kDa subunit-like protein [Arabidopsis thaliana]
gi|332645717|gb|AEE79238.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
Length = 233
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 121/182 (66%), Gaps = 14/182 (7%)
Query: 5 GGGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG 64
G CI+++ E G +ES R++L+R T +ML DRGY V +EL+ +L+EFR FG
Sbjct: 19 DDGTNCISKT----EDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFG 74
Query: 65 DKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSN 124
+K +LE LR+C+PLRS+P KK+LVV++GTE I +++R L+ QI N LH +IL+LQS
Sbjct: 75 EKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSK 134
Query: 125 MNTFARKEVLKFPFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQVT 174
MN FA+K + FPF VE F HI QPK E+L+ E+++L++K+ +E KQ+
Sbjct: 135 MNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLP 194
Query: 175 IL 176
L
Sbjct: 195 YL 196
>gi|297816744|ref|XP_002876255.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322093|gb|EFH52514.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 223
Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 121/183 (66%), Gaps = 14/183 (7%)
Query: 6 GGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD 65
G CI+++ E G ++S R++L+R T +ML DRGY V +EL+ +L+EFR FG+
Sbjct: 16 NGSHCISKT----EDTGGIDSKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGE 71
Query: 66 KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNM 125
K DLE LR+C+PLRS+P KK+LVV++GTE I +++R ++ QI N ++ +ILILQS M
Sbjct: 72 KPDLERLRICVPLRSDPKKKILVVFMGTEPITVKSVRAIHSQISNNVGVNAMILILQSKM 131
Query: 126 NTFARKEVLKFPFKVE----------IFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTI 175
N FA KE+ FPF VE I HI QPK E+L+ E+++L++K+ +E KQ
Sbjct: 132 NHFAHKELTTFPFTVETIPIGDLLVNIAKHIQQPKIEILNKEEKEQLLRKHALEDKQEDS 191
Query: 176 LVK 178
V+
Sbjct: 192 FVR 194
>gi|449437743|ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 227
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 115/176 (65%), Gaps = 14/176 (7%)
Query: 8 GECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC 67
G C+ SS++ G+ ES+RYFLSRRTV++ML DRGY + + + SL +FR TFG
Sbjct: 16 GTCL--SSYI--DDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFP 71
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
D++ L+L S+PSK++LVV+ GT ++ AIR + GQI NK++LHGLILI+Q+ +
Sbjct: 72 DVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITN 131
Query: 128 FARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
A K V F FKVEIF H L+P H+VL+ E+ KL+K+Y IE KQ+
Sbjct: 132 QAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQL 187
>gi|224139746|ref|XP_002323257.1| predicted protein [Populus trichocarpa]
gi|222867887|gb|EEF05018.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 14/182 (7%)
Query: 8 GECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC 67
G C+ SS V EG S ES+RY+LSRRTVL+ML DRGY+VP+SE+ SL +FR +G
Sbjct: 5 GRCL--SSFVDEG--STESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNP 60
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
D+E L+ +S+PSK+MLV++ G ++ IR + QI ++++L GLIL+LQ+N+
Sbjct: 61 DIELLKFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITN 120
Query: 128 FARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILV 177
A K + F FK+EIF HIL+PKH+VLS + +L+KKY IE KQ+ L+
Sbjct: 121 QAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLL 180
Query: 178 KQ 179
K+
Sbjct: 181 KK 182
>gi|87162511|gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
Length = 224
Score = 149 bits (375), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 116/182 (63%), Gaps = 13/182 (7%)
Query: 2 GGSGGGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRF 61
G+ EC+ R + ++E+ RYF R+T++ ML+DRGY V S+LT SL+EFR
Sbjct: 6 NGNETRSECLVR---ICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRS 62
Query: 62 TFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILIL 121
FG+ +L + + LRSNPS K+ VV+ GT++IR + + QI++KE L LIL++
Sbjct: 63 RFGEFPKPHTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVM 122
Query: 122 QSNMNTFARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGK 171
QS M ++ARKE+ PFKVEI H+LQPK+EVL+A E+ KL+ KYK+E K
Sbjct: 123 QSKMTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEK 182
Query: 172 QV 173
Q+
Sbjct: 183 QL 184
>gi|255576548|ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 238
Score = 149 bits (375), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 14/184 (7%)
Query: 6 GGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD 65
G G+C + + G+ E++RY+LSRRTVL+ML DRGY+VP+SE+ SL EFR G
Sbjct: 25 GLGKCFSSYA----DDGTHETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGP 80
Query: 66 KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNM 125
D++ L+ S+PSK+MLV++ G I+ IR + GQI+NK++L GLIL+LQ+ +
Sbjct: 81 NPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQI 140
Query: 126 NTFARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTI 175
A K V F FKVE+F H+L+PKH+VL+ E+ KL+K Y IE KQ+
Sbjct: 141 TNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPR 200
Query: 176 LVKQ 179
L+++
Sbjct: 201 LLRK 204
>gi|357509489|ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|124359979|gb|ABN07995.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 248
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 110/165 (66%), Gaps = 10/165 (6%)
Query: 19 EGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPL 78
+ GS+ES+RY+LSRRTVL+ML DRGY++P+ E+ SL +FR G D++ LRL
Sbjct: 44 KDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATH 103
Query: 79 RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPF 138
+NPSK++LVV+ G ++ +R + GQI+N+E+L GLILI+Q+ + + A K V F
Sbjct: 104 ATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSF 163
Query: 139 KVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
KVEIF H+L+PKH+VL+ ++ L+KKY I+ KQ+
Sbjct: 164 KVEIFQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQL 208
>gi|388510192|gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 10/165 (6%)
Query: 19 EGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPL 78
+ GS+ES+RY+LSRRTVL+ML DRGY++P+ E+ SL +FR G D++ LRL
Sbjct: 44 KDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATH 103
Query: 79 RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPF 138
+NPSK++LVV+ G ++ +R + GQI+N+E+L GLILI+Q+ + + A K V F
Sbjct: 104 ATNPSKRILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSF 163
Query: 139 KVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
KVEI H+L+PKH+VL+ ++ L+KKY I+ KQ+
Sbjct: 164 KVEILQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQL 208
>gi|297739911|emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 145 bits (365), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 114/168 (67%), Gaps = 10/168 (5%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
G +ES+RY+L+RRT+L+ML DRGY++P ++ SL +FR + K D + LR+ LRS+
Sbjct: 129 GRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSD 188
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE 141
PSKK+LV++ G + ++ AIR + QI+NK++L LIL+LQ+++ + A K V F F+VE
Sbjct: 189 PSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVE 248
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
F H+L+PKH VL+ E++KL+KKY + KQ+ +++Q
Sbjct: 249 KFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQ 296
>gi|359482221|ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 118/176 (67%), Gaps = 12/176 (6%)
Query: 14 SSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLR 73
SS V EG +ES+RY+L+RRT+L+ML DRGY++P ++ SL +FR + K D + LR
Sbjct: 22 SSFVDEG--RIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLR 79
Query: 74 LCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV 133
+ LRS+PSKK+LV++ G + ++ AIR + QI+NK++L LIL+LQ+++ + A K V
Sbjct: 80 ISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAV 139
Query: 134 LKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
F F+VE F H+L+PKH VL+ E++KL+KKY + KQ+ +++Q
Sbjct: 140 DLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQ 195
>gi|351723899|ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 109/163 (66%), Gaps = 10/163 (6%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRS 80
GS+ES+RY+LSRRT L+ML DRGY++P+ E+ SL++FR G D + LRL L +
Sbjct: 35 NGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHAT 94
Query: 81 NPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKV 140
N SK++LV++ G ++ AIR GQI+N++ L GLILI+++++ + A K V F FKV
Sbjct: 95 NSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKV 154
Query: 141 EIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
EIF H+L+PKH+VL+ ++ L+KKY IE KQ+
Sbjct: 155 EIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQL 197
>gi|356541565|ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 214
Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 14/181 (7%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGY-AVPNSELTRSLTEFRFTFGDKC 67
ECI + + + GS+ES RYFLSRRT+L+ML DRGY V ++ L+ SL EFR FG
Sbjct: 2 ECIAK---MTKDNGSMESLRYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNP 58
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
+ ++L C+ SNPS + VV+ GT++IR + + QI +K L GLIL++QS M +
Sbjct: 59 NPQTLAFCVSHLSNPSNTVQVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTS 118
Query: 128 FARKEVLKFPFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQVTILV 177
FA+K++ PFKVEI H+LQPK+E+L+ E+ L+ K+ ++ KQ+ ++
Sbjct: 119 FAKKDLESLPFKVEIIRIDDLLVNITKHVLQPKYEILTDDEKKALLTKHNLDEKQLPHML 178
Query: 178 K 178
K
Sbjct: 179 K 179
>gi|297824079|ref|XP_002879922.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325761|gb|EFH56181.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 218
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 108/161 (67%), Gaps = 10/161 (6%)
Query: 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNP 82
S+E ++Y+L+RRT ++ML DRGY V + ++ SL +FR +G++ D++ LR+ R +
Sbjct: 18 SVECHKYYLARRTTMEMLRDRGYDVSDEDVNFSLEQFRALYGERLDVDRLRISAKHRFDS 77
Query: 83 SKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEI 142
SKK++VV+ GT ++ A+R + +LN+E++ GLIL+LQS++ A K V F FKVE+
Sbjct: 78 SKKIMVVFCGTGMVKVNAMRAIAADVLNRESITGLILVLQSHITNQALKAVELFSFKVEL 137
Query: 143 F----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F H+L+PKH+VL+ E++ L+KKY IE KQ+
Sbjct: 138 FEITDLLVNVTKHVLRPKHQVLNDKEKESLLKKYSIEEKQL 178
>gi|346703279|emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
Length = 226
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 112/174 (64%), Gaps = 13/174 (7%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
+CI + +++ GS+ES R FL+RRT L+ML DRGY+VP+ E+ R+L EFR +G+K +
Sbjct: 17 DCI---ASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSE 73
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PSKK+ +V+ E ++ IR +Y Q E L LILILQS + +
Sbjct: 74 IERLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQT-EGENLSRLILILQSRILSR 132
Query: 129 ARKEVLK-FPFKVEIFY--------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F KV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 133 ARESIKEIFKLKVDIFQELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQL 186
>gi|346703190|emb|CBX25289.1| hypothetical_protein [Oryza brachyantha]
Length = 288
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 15/176 (8%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
+CI + +++ GS+ES R FL+RRT L+ML DRGY+VP E+ R+L EFR +G+K +
Sbjct: 77 DCI---ASMVDRSGSVESKRLFLARRTALEMLRDRGYSVPEEEIARTLPEFRAWWGEKSE 133
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PSKK+ +V+ E ++ IR +Y Q E L LILILQS + +
Sbjct: 134 IERLAFTTTLVSDPSKKVQIVFCPPEPVKIATIREIYRQT-EGENLSRLILILQSRILSR 192
Query: 129 ARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F KV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 193 ARESIKEIFKLKVDIFQVTELLVNITKHVLKPKHEVLSAAQKAKLLKQYNVEDSQL 248
>gi|108862173|gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 335
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 16/176 (9%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
ECI M GS+ES+R FL+RRT ++ML DRGY+VP +E+ R+L EFR + +K
Sbjct: 125 ECIAS----MIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPG 180
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PSKK+ +V+ E ++ IR +Y Q +E L L+LILQS + +
Sbjct: 181 IERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSR 239
Query: 129 ARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F FKV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 240 AREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 295
>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
Length = 1617
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 81/105 (77%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRT 98
M DRGY V ++ELTRSL EFR FG+ DL+SLR + LRSNP K LV+++GT+EIRT
Sbjct: 1 MHKDRGYDVADTELTRSLMEFRSIFGNCPDLDSLRFSISLRSNPYNKNLVIFMGTDEIRT 60
Query: 99 QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF 143
IR +YGQIL+KE+ GLILILQS MN FA+KE KFPFKV++F
Sbjct: 61 ANIRAVYGQILSKESRQGLILILQSKMNHFAKKEPEKFPFKVKVF 105
>gi|242069947|ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
gi|241936093|gb|EES09238.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
Length = 263
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 108/177 (61%), Gaps = 15/177 (8%)
Query: 8 GECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC 67
CI S +++ GGS+ES R FL+RRT L+ML DRGYAVP EL R+L EFR + DK
Sbjct: 51 AACI---SAMLDLGGSVESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKP 107
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
+LE L L S+PS K+ VV+ E ++ AIR +Y + E L LILILQ + +
Sbjct: 108 ELERLAFSTTLASDPSSKVKVVFCPPEPVKIAAIRVVYTGV-KDENLSRLILILQGRIMS 166
Query: 128 FARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + FP+KV+ F H L+PKH+VL+A E+ KL+K+Y + Q+
Sbjct: 167 KAREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQL 223
>gi|115484123|ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113644427|dbj|BAF27568.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|125576186|gb|EAZ17408.1| hypothetical protein OsJ_32930 [Oryza sativa Japonica Group]
Length = 227
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 16/176 (9%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
ECI M GS+ES+R FL+RRT ++ML DRGY+VP +E+ R+L EFR + +K
Sbjct: 17 ECIAS----MIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPG 72
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PSKK+ +V+ E ++ IR +Y Q +E L L+LILQS + +
Sbjct: 73 IERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSR 131
Query: 129 ARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F FKV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 132 AREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 187
>gi|115487264|ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|125535725|gb|EAY82213.1| hypothetical protein OsI_37416 [Oryza sativa Indica Group]
gi|125578454|gb|EAZ19600.1| hypothetical protein OsJ_35178 [Oryza sativa Japonica Group]
gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza glaberrima]
Length = 227
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 16/176 (9%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
ECI M GS+ES+R FL+RRT ++ML DRGY+VP +E+ R+L EFR + +K
Sbjct: 17 ECIAS----MIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPG 72
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PSKK+ +V+ E ++ IR +Y Q +E L L+LILQS + +
Sbjct: 73 IERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSR 131
Query: 129 ARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F FKV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 132 AREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 187
>gi|297817026|ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322234|gb|EFH52655.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 222
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 105/168 (62%), Gaps = 10/168 (5%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
S ES+RY+L+R+ LQML DRGY V + ++ SL +FR +G++ D++ LR+ RS+
Sbjct: 21 SSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDRLRISAQHRSD 80
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE 141
SKK+ VV+ GT ++ AIR + +L++E + GLIL+LQS + A K + F FKVE
Sbjct: 81 SSKKVKVVFFGTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAMKAIELFSFKVE 140
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
IF H L+P+H VL+ E+ L+KK+ IE KQ+ + K+
Sbjct: 141 IFQITDLLVNITKHALKPQHRVLNDKEKTTLLKKFSIEEKQLPRISKK 188
>gi|346703375|emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
Length = 206
Score = 132 bits (331), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 107/167 (64%), Gaps = 12/167 (7%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
M GS+ES+R FL+RRT ++ML DRGY+VP +E+ R+L EFR + +K +E L
Sbjct: 1 MIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTT 60
Query: 78 LRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK-F 136
L S+PSKK+ +V+ E ++ IR +Y Q +E L L+LILQS + + AR+ + + F
Sbjct: 61 LVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSRAREAIKEIF 119
Query: 137 PFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FKV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 120 KFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 166
>gi|125533361|gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
Length = 227
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 109/176 (61%), Gaps = 16/176 (9%)
Query: 9 ECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
ECI M GS+ES+R FL+RRT ++ML DRGY+VP +E+ R+ EFR + +K
Sbjct: 17 ECIAS----MIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPG 72
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PSKK+ +V+ E ++ IR +Y Q +E L L+LILQS + +
Sbjct: 73 IERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQT-KEENLSRLVLILQSKILSR 131
Query: 129 ARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F FKV+IF H+L+PKHEVLSA ++ KL+K+Y +E Q+
Sbjct: 132 AREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQL 187
>gi|15230206|ref|NP_191267.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana]
gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana]
gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
Length = 222
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 104/162 (64%), Gaps = 10/162 (6%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
S ES+RY+L+RR LQML DRGY V + ++ SL +FR +G++ D++ LR+ RS+
Sbjct: 21 SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE 141
+KK+ +V+ GT ++ AIR + IL++E + GLIL+LQ+++ A K + F FKVE
Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVE 140
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
IF H L+P+H+VL+ E+ L+KK+ IE KQ+
Sbjct: 141 IFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQL 182
>gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
Length = 222
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 104/162 (64%), Gaps = 10/162 (6%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
S ES+RY+L+RR LQ+L DRGY V + ++ SL +FR +G++ D++ LR+ RS+
Sbjct: 21 SSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE 141
+KK+ +V+ GT ++ AIR + IL++E + GLIL+LQ+++ A K + F FKVE
Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVE 140
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
IF H L+P+H+VL+ E+ L+KK+ IE KQ+
Sbjct: 141 IFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQL 182
>gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus]
Length = 223
Score = 129 bits (323), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 106/166 (63%), Gaps = 10/166 (6%)
Query: 24 LESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPS 83
++S+ Y+L+RRT ++ML DRGY + N ++ +L EFR +GD+ +++ LR+ S+ S
Sbjct: 23 VDSHSYYLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSS 82
Query: 84 KKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF 143
KK+ VV+ G+ ++ AIR + +L +E L GLIL+LQS++ A K V F FKVE+F
Sbjct: 83 KKIAVVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFSFKVELF 142
Query: 144 Y----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
H+L+PKH VL+ E++ L KK+ I+ +Q+ L+K+
Sbjct: 143 QLTELLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKLLKK 188
>gi|15227327|ref|NP_181665.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
gi|3894190|gb|AAC78539.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
gi|19310385|gb|AAL84932.1| At2g41340/F13H10.11 [Arabidopsis thaliana]
gi|330254867|gb|AEC09961.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
Length = 218
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 105/162 (64%), Gaps = 10/162 (6%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
S+E ++Y+L+RRT ++ML DRGY V + ++ SL +FR +G+ D++ LR+ R +
Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE 141
SKK+ VV+ GT ++ A+R + +L++E + GLIL+LQS++ A K V F FKVE
Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVE 136
Query: 142 IF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H+L+PKH+VL+ E++ L+KK+ IE KQ+
Sbjct: 137 LFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQL 178
>gi|326520990|dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 108/176 (61%), Gaps = 15/176 (8%)
Query: 10 CITRSSHVMEGGGS-LESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD 68
CI SS V GG + +ES R FL+RRT L+ML DRGY+VP EL R+L EFR + + +
Sbjct: 39 CI--SSMVDLGGAAGVESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWWSETPE 96
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
+E L L S+PS K+ +V+ E ++ AIR ++ +I +E L LILILQS +
Sbjct: 97 IERLSFSTTLASDPSSKVRIVFCPPEPVKIAAIREVHLRI-KEENLSCLILILQSKITAR 155
Query: 129 ARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
AR+ + + F FKV++F H+L+P HEVL+A E+ KL+K+Y + Q+
Sbjct: 156 ARESIKEIFKFKVDVFQITELLVNITKHVLKPNHEVLTAEEKAKLLKEYNVVDSQL 211
>gi|195635599|gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 264
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 15/177 (8%)
Query: 8 GECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC 67
CI S +++ GGS+ES+R FL+RRT L+ML DRGYAVP EL R+L EFR + +
Sbjct: 52 AACI---STMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRP 108
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
+LE L L S+PS K+ VV+ ++ AIR +Y ++ E L LILILQ + +
Sbjct: 109 ELERLAFSTTLASDPSSKVKVVFCPPGPVKIAAIRLIYTEV-KDENLSRLILILQGKIMS 167
Query: 128 FARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
R+ + + F FKV+ F H+L+PKHEVL+A + KL+K+Y + Q+
Sbjct: 168 TTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQL 224
>gi|414588639|tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 263
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 15/177 (8%)
Query: 8 GECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC 67
CI S +++ GGS+ES+R FL+RRT L+ML DRGYAVP EL R+L EFR + +
Sbjct: 51 AACI---STMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRP 107
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
+LE L L S+PS K+ VV+ ++ AIR +Y ++ E L LILILQ + +
Sbjct: 108 ELERLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEV-KDENLSRLILILQGKIMS 166
Query: 128 FARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
R+ + + F FKV+ F H+L+PKHEVL+A + KL+K+Y + Q+
Sbjct: 167 TTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQL 223
>gi|226491902|ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
gi|194706176|gb|ACF87172.1| unknown [Zea mays]
Length = 248
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 106/177 (59%), Gaps = 15/177 (8%)
Query: 8 GECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC 67
CI S +++ GGS+ES+R FL+RRT L+ML DRGYAVP EL R+L EFR + +
Sbjct: 36 AACI---STMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRP 92
Query: 68 DLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
+LE L L S+PS K+ VV+ ++ AIR +Y ++ E L LILILQ + +
Sbjct: 93 ELERLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEV-KDENLSRLILILQGKIMS 151
Query: 128 FARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
R+ + + F FKV+ F H+L+PKHEVL+A + KL+K+Y + Q+
Sbjct: 152 TTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQL 208
>gi|357153158|ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
distachyon]
Length = 468
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 12/174 (6%)
Query: 11 ITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE 70
+ R M G ES+R FL+RRT L+ML DR YAVP ++L R+L EFR + ++ +++
Sbjct: 256 VARCVSSMIDSGDPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEID 315
Query: 71 SLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR 130
L L S+PS K+ +V+ E + AIR +YG++ + E L LIL+LQS + + A+
Sbjct: 316 RLSFSTTLASDPSNKVQLVFCPPEPFKIAAIREVYGRVKD-ENLSCLILVLQSKITSRAK 374
Query: 131 KEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ + F +KV++F H+L+P+HEVL+ E+ L+KKY + Q+
Sbjct: 375 DAIKEIFKYKVDVFQIAELLVNVTKHVLKPEHEVLTPEEKAHLLKKYNVVDSQL 428
>gi|357155279|ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 270
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 106/180 (58%), Gaps = 17/180 (9%)
Query: 14 SSHVMEGG-GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESL 72
+S V GG S E + FL+RRT L+ML DRGY+VP EL R+LTEFR + +K ++ L
Sbjct: 60 ASMVDRGGRASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKPEMRRL 119
Query: 73 RLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR-- 130
S+ S K+ V+ + + IR +Y QI +E L LILILQ ++ + AR
Sbjct: 120 SFSATFASDHSNKVQFVFCPPKPVNITTIREVYSQI-EEENLSRLILILQGDITSKARDC 178
Query: 131 -KEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
KE+ FPFKV+IF H L+PKHEVL+A E+ +L+KKY +E ++ +++
Sbjct: 179 IKEI--FPFKVDIFQVTELLVNISKHELKPKHEVLTAEEKAELLKKYNLEDSRLPCMLEN 236
>gi|195606570|gb|ACG25115.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 154
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 91/151 (60%), Gaps = 12/151 (7%)
Query: 17 VMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCL 76
+++ GGS+ES+R FL+RRT L+ML DRGYAVP EL R+L EFR +LE L
Sbjct: 1 MLDRGGSVESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXT 60
Query: 77 PLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK- 135
L S+PS K+ VV+ ++ AIR +Y ++ E L LILILQ + + R+ + +
Sbjct: 61 TLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEV-KDENLARLILILQGKIMSPTRESIKEI 119
Query: 136 FPFKVEIFY----------HILQPKHEVLSA 156
F FKV+ F H+L+PKHEVL+A
Sbjct: 120 FRFKVDTFQITELLVNITKHVLKPKHEVLTA 150
>gi|356506928|ref|XP_003522225.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 183
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 92/151 (60%), Gaps = 14/151 (9%)
Query: 39 MLNDRGY-AVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIR 97
ML DRGY A+ ++ ++ SLTEF F + ++L C+P SN + VV++G +EIR
Sbjct: 1 MLQDRGYDAIQHANISPSLTEFCSRFSQNPNPQTLDFCVPHLSN---TVQVVFVGPKEIR 57
Query: 98 TQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVE----------IFYHIL 147
+ + QI +K +L LIL+++S M +FA+K++ FPFKVE I H+L
Sbjct: 58 KGTVNEICSQIADKGSLKWLILVVKSKMTSFAKKDLENFPFKVETIKIDDLLVNITKHVL 117
Query: 148 QPKHEVLSAGERDKLMKKYKIEGKQVTILVK 178
QPK+E+L+ E+ L+ K+ ++ KQ+ ++K
Sbjct: 118 QPKYEILTDDEKQALLTKHNLDEKQLPHMLK 148
>gi|147776024|emb|CAN60800.1| hypothetical protein VITISV_022856 [Vitis vinifera]
Length = 162
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 11/103 (10%)
Query: 86 MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY- 144
+LVV+ GT+EIR IR ++ QI N+E LH LIL+LQS MN+ ARK V ++P KVE F
Sbjct: 26 ILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQI 84
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVK 178
H+ PKHE+LSA E+ KL+ KYK+E KQ I+ K
Sbjct: 85 TELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQK 127
>gi|359481904|ref|XP_003632689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1-like [Vitis vinifera]
Length = 207
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 18/166 (10%)
Query: 11 ITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVP--NSELTRSLTEFRFTFGDKCD 68
+T SS V EG S+ES+RY+L+RRT+L+ML DRGY++P + ++ F D
Sbjct: 39 LTLSSFVDEG--SIESHRYYLARRTLLEMLRDRGYSIPALDIDIYLQFXSVFHLFVSSSD 96
Query: 69 LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTF 128
L +LV++ G + ++ AIR + QI+NK++L LIL+LQ+++ +
Sbjct: 97 YSLFXL----------HILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQ 146
Query: 129 ARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVT 174
A K V F F+VE+F Q ++ ++D + + Y +E QV
Sbjct: 147 ALKAVDLFSFQVEMF----QVSLDLPRMLQQDAIARYYGLEKGQVV 188
>gi|168003716|ref|XP_001754558.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694179|gb|EDQ80528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 15/168 (8%)
Query: 20 GGGSLESY--RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
G SL+ R + R+TV++ML DR Y V EL + EFR +GD+ E L + P
Sbjct: 2 SGQSLDEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKP 61
Query: 78 LRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LK 135
RSN ++ + V + ++ + I+ Y + E +H IL++Q N+ FAR+ V +
Sbjct: 62 KRSNNAEHIFVFFPEEAKVGVKTIKT-YVDRMKTENVHRAILVVQQNLTPFARQCVSEMS 120
Query: 136 FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ VE+F H+L P+HEVL+A E+ L+++Y ++ Q+
Sbjct: 121 SKYHVEVFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQL 168
>gi|168011548|ref|XP_001758465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690500|gb|EDQ76867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 15/168 (8%)
Query: 20 GGGSLE--SYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
G SL+ S R + R+TV++ML DR Y V + ELT S +FR +GD+ E L + P
Sbjct: 2 SGQSLDEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKP 61
Query: 78 LRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LK 135
RSN ++ + V + ++ + I+ Y + E +H IL++Q N+ FAR+ V +
Sbjct: 62 RRSNNAEHIFVFFPEEAKVGVKTIKT-YVDRMKTENVHRAILVVQQNLTPFARQCVSEMA 120
Query: 136 FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ +E+F H+L P HEVL+ E+ L+++Y ++ Q+
Sbjct: 121 SKYHLEVFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQL 168
>gi|303282333|ref|XP_003060458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457929|gb|EEH55227.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 14/157 (8%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVV 89
F +TV +MLN RGY V EL R FR +GD ESL L LP R +PS+ + V
Sbjct: 11 FRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDDPSENIFVF 70
Query: 90 YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP---FKVEIFY-- 144
+ E++ + I+ Y + + E++ I+++Q+++ FA++ +L+ F +E F
Sbjct: 71 FPEEEKVGVKTIKE-YAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFYIEQFQEM 129
Query: 145 --------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H +LS E+ L+ +YK++ Q+
Sbjct: 130 ELLVNITEHVLVPEHVLLSDAEKRTLLARYKVKDTQL 166
>gi|440803359|gb|ELR24265.1| RNA polymerase Rpb5, Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 204
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 15/160 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDL--ESLRLCLPLRSNPSKK 85
R FL R+TVLQML DRGY VP S+L FR F + L E+L L + + +P+ +
Sbjct: 6 RVFLVRKTVLQMLQDRGYIVPQSDLDMDRDSFRSKFMGESALNREALTLLMQKKDDPTDQ 65
Query: 86 MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------ 139
+ V + ++ + ++ Y + +EA+ I+I+Q + FA++ + +
Sbjct: 66 IFVFWPEDLKVGVRPVKK-YCDRMKEEAVFRAIVIIQQTLTAFAKQVFAEMAPRYTIEHF 124
Query: 140 ------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I HIL PKH++L+ E+ L+ KYK+E Q+
Sbjct: 125 QEAELLVNITEHILVPKHKLLTELEKQTLLAKYKLEDSQL 164
>gi|268568358|ref|XP_002640230.1| C. briggsae CBR-RPB-5 protein [Caenorhabditis briggsae]
gi|296439763|sp|A8XGH1.1|RPAB1_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 211
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ TFGD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V++A E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>gi|341885241|gb|EGT41176.1| CBN-RPB-5 protein [Caenorhabditis brenneri]
gi|341885706|gb|EGT41641.1| hypothetical protein CAEBREN_11585 [Caenorhabditis brenneri]
Length = 211
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ TFGD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLEHFKETFGDRPSEKKPARADLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V+++ E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQL 171
>gi|241017563|gb|ACS66689.1| RNA polymerase II B subunit [Caenorhabditis brenneri]
Length = 211
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ TFGD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V+++ E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQL 171
>gi|388498148|gb|AFK37140.1| unknown [Lotus japonicus]
Length = 150
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 53 TRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKE 112
T SL E + KC P +SN V++ G ++ +IR + GQI+NK+
Sbjct: 9 TTSLAEPHW----KCSKTEATPFPPPKSNSPSLNSVIFCGPGVVKVTSIRNIAGQIVNKD 64
Query: 113 ALHGLILILQSNMNTFARKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKL 162
L G++LI+++N+ A K + F FKVEIF H+L+PKH+VL+ ++ L
Sbjct: 65 TLSGVLLIVENNITGQALKAINLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDRQKKNL 124
Query: 163 MKKYKIEGKQV 173
+KK+ IE KQ+
Sbjct: 125 LKKFNIEEKQL 135
>gi|324521545|gb|ADY47878.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Ascaris
suum]
Length = 211
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRL 74
LE+Y+ + R+TV+QM +DRGY V EL ++L F+ TFGDK L +
Sbjct: 2 ADDELETYKLWRVRKTVMQMCHDRGYLVTQEELDQTLDNFKETFGDKPSERKPGRNELTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++A+ I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPTDQMFVFFPEDAKIGIKTIKAICQQ-MQEQAITRAIIVVQAGMTPSAKQAIT 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V++ E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYTLEQFLEAELMVNITEHELVPEHVVMNNEEKTELLARYKLKDTQL 171
>gi|17507947|ref|NP_491961.1| Protein RPB-5 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2.1|RPAB1_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
gi|351064177|emb|CCD72467.1| Protein RPB-5 [Caenorhabditis elegans]
Length = 211
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ +GD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V++A E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQL 171
>gi|312095335|ref|XP_003148322.1| RPB-5 protein [Loa loa]
gi|307756513|gb|EFO15747.1| DNA-directed RNA polymerase I [Loa loa]
Length = 211
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK-----CDLESLRL 74
LE+Y+ + R+T++QM +DRGY V EL ++L F+ TFGDK L +
Sbjct: 2 ADDELETYKLWRVRKTIMQMCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTV 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++A+ I+++Q+ M A++ +
Sbjct: 62 LVAHNDDPTDQMFVFFPEDSKIGIKTIKAICQQ-MQEQAITRAIIVVQTGMTPSAKQAIA 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V++ E+++L+ +YK++ Q+
Sbjct: 121 DMAPKYTLEQFLEAELMVNITEHELVPEHVVMTNEEKNELLGRYKLKDTQL 171
>gi|219112619|ref|XP_002178061.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410946|gb|EEC50875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 228
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 1 MGGSGGGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR 60
+ G+G + ++ ++GG + E+ R F RT+ ML+ RGY VP + + + F+
Sbjct: 5 IDGTGDVSPALALAAPTIQGGLTPEAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFK 64
Query: 61 FTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILI 120
FG+ E+L + + + + ++ + + E++ + I+ +Y + E++ I+I
Sbjct: 65 ERFGEYPSRENLTILVEKADDDTNQLFIFFPEDEKVGVKPIK-VYTDRMRAESVSNAIII 123
Query: 121 LQSNMNTFARKEVLKFP-------FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
L+ ++ FA++ V + FK V+I H L P H+VL+ E+++L+K+Y++
Sbjct: 124 LRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEKNELLKRYRL 183
Query: 169 EGKQV 173
+ Q+
Sbjct: 184 KDSQL 188
>gi|159479030|ref|XP_001697601.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158274211|gb|EDO99994.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 206
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RRT LQMLNDRGY V E+ + +FR FG+ + L + +P + +P++++
Sbjct: 6 RLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPTEQIF 65
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY- 144
V + +++ + I+ L + + E ++ I++ S FA+ E ++ + +E F
Sbjct: 66 VFFPEEQKVGVKTIK-LLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLE 124
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H +LS E+ L+ +YKI+ Q+
Sbjct: 125 SELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQL 162
>gi|413952168|gb|AFW84817.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 238
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RRTV+QML DRGY V + EL S +F FG+ E L + +++PS ++
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKV--EIFY- 144
V + +++ + I+ Y +++ E + +L+LQ N+ FA+ +++ K+ EIF
Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ QV
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQV 170
>gi|145346274|ref|XP_001417617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577844|gb|ABO95910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F R+T+ +ML RGY V EL R + F FG++ ESL + P R +PS+ +
Sbjct: 8 RLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDDPSENIF 67
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL-----KFPFK--- 139
V + E++ + I+ L + + E + I+++Q+++ FA++ +L KF +
Sbjct: 68 VFFPDEEKVGVKTIKDL-AKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQ 126
Query: 140 -----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H+L P+H +LS ++ L+ +YK++ Q+
Sbjct: 127 ETELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQL 165
>gi|357500691|ref|XP_003620634.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495649|gb|AES76852.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 208
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 15/160 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
+ F ++T+LQML+DR Y V +ELT S +F F +G+ E L + R+NPS+K+
Sbjct: 10 KLFRIQKTLLQMLSDRNYLVEETELTMSREDFIFKYGEHMKREQLEINKTHRNNPSEKIC 69
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV-------------- 133
V + ++ + +RG ++L + G IL+ Q+ ++ +AR V
Sbjct: 70 VFFSDDAKLGVKIVRGFITRMLQENVDSG-ILVCQTKLSHYARSAVTEMSSVGSKRLEVF 128
Query: 134 LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H P H+VL+ E+ L+KKY ++ Q+
Sbjct: 129 LEDELLVNITKHERVPPHQVLTEAEKRALLKKYTVKDTQL 168
>gi|302854284|ref|XP_002958651.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
gi|300255976|gb|EFJ40254.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
Length = 202
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RRT LQMLNDRGY V E+ S +FR FG+ + L + +P + +P+++M
Sbjct: 6 RLWRVRRTCLQMLNDRGYLVSQEEINTSKDQFRDRFGENPRKDDLTILVPKQDDPTEQMF 65
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR------------KEVLK 135
V + +++ + I+ L + + E ++ I++ FA+ + L+
Sbjct: 66 VFFPEEQKVGVKTIK-LLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIEHFLE 124
Query: 136 FPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L P+H +LS E+ L+ +YKI+ Q+
Sbjct: 125 SELLVNITEHTLVPEHRILSPDEKRTLLDRYKIKETQL 162
>gi|198427419|ref|XP_002130595.1| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona
intestinalis]
Length = 210
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+TV+Q+ +DRGY V EL +SL EF+ FGDK + L + +
Sbjct: 6 ETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ Y Q + +E + I+++Q +M A++ + K
Sbjct: 66 DDPTDQMFVFFPEEPKVGVKTIKT-YCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+ +L+ +YK++ Q+
Sbjct: 125 YILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQL 170
>gi|308803436|ref|XP_003079031.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
gi|116057485|emb|CAL51912.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
Length = 1124
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 11 ITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE 70
IT + + E S R F R+T+ +ML RGY V EL R F FG++ +
Sbjct: 910 ITLNGNRREKMSSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRD 969
Query: 71 SLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR 130
SL + P + +PS+ + V + E++ + I+ L + + +E + I+++Q+++ FA+
Sbjct: 970 SLTILAPRKDDPSENIFVFFPDEEKVGVKTIKDL-AKRMKEENVFRAIIVVQASLTPFAK 1028
Query: 131 KEVL-----KFPFK--------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ +L KF + V I H+L P+H +LS ++ L+++YK++ Q+
Sbjct: 1029 QSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQL 1084
>gi|449455411|ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 205
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 88/160 (55%), Gaps = 12/160 (7%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E + F +R+TVLQML DRG+ V + EL S +F+ +G+ E L + +R+N S
Sbjct: 7 EITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSMRNNSSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-FKVEIF 143
++ V + ++ + +R Y + + + IL++Q +++FAR + + P F +E+F
Sbjct: 67 QIYVFFPEEPKVSVKTVRT-YINRMKSDNVFRAILVVQEKLSSFARSSICEAPKFHLEVF 125
Query: 144 Y----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H++L+ ++ L+++Y ++ Q+
Sbjct: 126 QEAELLVNIKDHVLIPEHQLLTNEDKKTLLERYTVKDTQL 165
>gi|156548548|ref|XP_001604962.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Nasonia vitripennis]
Length = 210
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++QS M A++ ++ K
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|255085448|ref|XP_002505155.1| predicted protein [Micromonas sp. RCC299]
gi|226520424|gb|ACO66413.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F R+TV +MLN RGY V +EL R F FG+ ++L L LR +P++ +
Sbjct: 7 RLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPTQHIF 66
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL-----KFPFK--- 139
V + E++ + I+ Y + + E ++ I+++Q ++ FAR+ +L KF +
Sbjct: 67 VFFPDEEKVGVKTIKE-YAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQ 125
Query: 140 -----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H+L P+H +LS ++ L+ +YK++ Q+
Sbjct: 126 EAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQL 164
>gi|116785870|gb|ABK23892.1| unknown [Picea sitchensis]
Length = 191
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
++ + F RRTVLQMLNDR Y V + E+ + +F FG+ E L + R++PS+
Sbjct: 6 QTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSE 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEI 142
++ V + ++ ++I+ Y + + E + IL++Q + FAR+ V +F F +E+
Sbjct: 66 QIFVFFPEEAKVGVKSIKT-YVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLEV 124
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F H+L P+ ++L+ E+ L+++Y ++ QV
Sbjct: 125 FQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQV 165
>gi|226530454|ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RRTV+QML DRGY V + EL S +F FG+ E L + +++PS ++
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKV--EIFY- 144
V + +++ + I+ Y +++ E + +L+LQ N+ FA+ +++ K+ EIF
Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQL 170
>gi|66543279|ref|XP_623541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
Length = 179
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLC 75
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L +
Sbjct: 2 DDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
Query: 76 LPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
+ +P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ ++
Sbjct: 62 VAHNDDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 136 FPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
K + I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|48124579|ref|XP_396561.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
gi|340724888|ref|XP_003400810.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus terrestris]
gi|380012055|ref|XP_003690105.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis florea]
Length = 210
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|302795809|ref|XP_002979667.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
gi|302807361|ref|XP_002985375.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300146838|gb|EFJ13505.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300152427|gb|EFJ19069.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
Length = 206
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RRT++QML DR Y V + E++ + +FR FGD+ + L + RS+ S ++
Sbjct: 10 RLYRIRRTIMQMLRDRDYLVADYEVSLTKEQFRDKFGDEPKRDDLVISKAKRSDQSDQIF 69
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY- 144
V + ++ + I+ Y + + E + I+++Q+++ FA++ + +++E+F
Sbjct: 70 VFFPEEPKVGVKTIKT-YAERMKSELVFRAIMVVQTSLTPFAKQCLSEMAPKYQIEVFQE 128
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H L P+H+VLSA E+ L+++Y ++ Q+
Sbjct: 129 AELLVNIKEHTLVPEHQVLSAEEKKTLLERYTVKESQL 166
>gi|350422012|ref|XP_003493028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus impatiens]
Length = 210
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|308505230|ref|XP_003114798.1| CRE-RPB-5 protein [Caenorhabditis remanei]
gi|308258980|gb|EFP02933.1| CRE-RPB-5 protein [Caenorhabditis remanei]
Length = 211
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 18/171 (10%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRL 74
LE+YR + R+TVLQM++DRGY V EL + L F+ +GD K L +
Sbjct: 2 ADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKEQYGDRPSEKKPARSDLTI 61
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV- 133
+ +P+ +M V + +I + I+ + Q + ++ + ++++Q M A++ +
Sbjct: 62 LVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQ-MQEQNISRAVIVVQIGMTPSAKQSIG 120
Query: 134 -----------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H V++A E+ +L+ +YK++ Q+
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTADEKAELLARYKLKDSQL 171
>gi|322797006|gb|EFZ19320.1| hypothetical protein SINV_02648 [Solenopsis invicta]
Length = 211
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL + L +F+ FGDK + L + +
Sbjct: 7 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQDLEQFKEQFGDKPSEKKPARSDLIVLVAHN 66
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ ++ K
Sbjct: 67 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 125
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 126 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 171
>gi|299749820|ref|XP_001836357.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|298408613|gb|EAU85541.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 208
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSN 81
E+ R + +T+ +++ DRG++V + E+ SL FR +G+ D L R N
Sbjct: 6 ETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRLN 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK---------- 131
PS ++ V + + +A+R L G I+ ++A+ I+I + M + ARK
Sbjct: 66 PSDQIFVYFTEEPNVGVKAMRKLLG-IMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 124
Query: 132 --EVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
E + V I +H L P+HEVLS E+ L+++Y+++ Q+
Sbjct: 125 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQL 168
>gi|383865249|ref|XP_003708087.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Megachile rotundata]
Length = 210
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLGRYKLKENQL 170
>gi|242017042|ref|XP_002429002.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212513848|gb|EEB16264.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 210
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 88/166 (53%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK-------- 131
+P+ +M V + +I + I+ Y Q + +E +H I+++Q M A++
Sbjct: 66 DDPTDQMFVFFPDDPKIGIKTIKT-YCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPK 124
Query: 132 ----EVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ L+ + I H L P+H V++ E+ +L+++YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQL 170
>gi|388499936|gb|AFK38034.1| unknown [Lotus japonicus]
Length = 206
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+TV+QML DR Y V + E+ S EF+ +GD E L + + PS ++ V +
Sbjct: 15 RKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTKKDGPSDQIYVFFPD 74
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY------ 144
++ + ++ Y +N E + IL+ QSN+ FA+ + + F++E+F
Sbjct: 75 EPKVGVKTMKT-YTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSKFQLEVFQEAELLV 133
Query: 145 ----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H++L+ E+ L+++Y ++ Q+
Sbjct: 134 NIKEHVLVPEHQILNETEKKTLLERYTVKETQL 166
>gi|321475403|gb|EFX86366.1| hypothetical protein DAPPUDRAFT_308488 [Daphnia pulex]
Length = 210
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L +F+ FGDK L + +
Sbjct: 6 ETYRMWRVRKTIMQLCHDRGYLVTQDELDQTLEQFKIQFGDKPSERKPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y Q + +E + I+++QS M A++ + K
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKT-YCQRMQEENITRAIIVVQSGMTPSAKQSLTDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+ +L+ +YK++ Q+
Sbjct: 125 YILEYFTESELLINITEHELVPEHVVLTPEEKQELLCRYKLKENQL 170
>gi|357482711|ref|XP_003611642.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512977|gb|AES94600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 331
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+TV++ML DR Y V + E+ S EF+ +G+ + E L + + NPS ++ V +
Sbjct: 140 RKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKDNPSDQIYVFFPE 199
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIF------- 143
E++ R Y + +N E ++ I++ Q+++ A + +F F +E+F
Sbjct: 200 DEKVGVHTFRT-YTKRMNSENVYRAIIVCQTSLTNMAWNSISQFDSKFHLEVFQEAELLV 258
Query: 144 ---YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
YH L P+H++L+ E+ ++++Y ++ Q+
Sbjct: 259 NVRYHKLVPEHQLLTDNEKKTVLERYTVKETQL 291
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+ V++ML DR Y V + E+ S EF+ T+G+ E L + + NPS ++ V +
Sbjct: 15 RKKVMEMLRDRNYLVGDFEVCMSKQEFKETYGENLKREDLVIKKAKKDNPSDQIYVFFPE 74
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK-EVLKFPFKVEIFY 144
+++ +R Y ++ + ++ I++ Q+++ AR + F +E+F+
Sbjct: 75 NDKVDVHTLRT-YTNRMSSDNVYRAIVVCQTSLTKAARDFSEIASKFHLEVFH 126
>gi|222619416|gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
RRTV+QML DRGY V EL +F +G+ E L + +++PS ++ V +
Sbjct: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY------ 144
+++ + I+ Y +++ E + +L+LQ N+ FAR + L+ +EIF
Sbjct: 79 DDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 145 ----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ GE+ L+++Y ++ Q+
Sbjct: 138 NIKEHVLVPEHQVLNNGEKKTLLERYTLKETQL 170
>gi|350018416|dbj|GAA37368.1| DNA-directed RNA polymerases I II and III subunit RPABC1
[Clonorchis sinensis]
Length = 206
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+Y+ + R+T+L+M DRGY V EL ++L +F+ + GD + L + + +P+
Sbjct: 6 ETYKLWRIRKTILKMCKDRGYLVMPKELEQTLDDFKLSVGDPPSRKDLLMVVNHEEDPAD 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEI 142
+ V + E++ + IR Q+ ++++ + + FA+ + L + +E
Sbjct: 66 MLYVFFPDEEKVNMKTIRAYLNQMQQDSTYRAILVLQEKGLTPFAKTALAELSCKYTLEC 125
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F+ H L P+H VL+ E+ +L+++Y+++ Q+
Sbjct: 126 FFETELMVNITEHQLVPQHNVLTQEEKKELLERYRLKESQL 166
>gi|332022832|gb|EGI63105.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Acromyrmex echinatior]
Length = 210
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLELFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|332373332|gb|AEE61807.1| unknown [Dendroctonus ponderosae]
Length = 210
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEHFGDKPSEKRPSRSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y Q + E +H I+++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPDEPKIGIRTIKT-YCQRMQDENIHRAIIVVQAGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++ E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMNPEEKQELLARYKL 165
>gi|336370755|gb|EGN99095.1| hypothetical protein SERLA73DRAFT_181909 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383518|gb|EGO24667.1| hypothetical protein SERLADRAFT_468322 [Serpula lacrymans var.
lacrymans S7.9]
Length = 206
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
E+ + + RT+ +++ DRG+AV + E+ L FR + G D L R+N
Sbjct: 4 ETAKLWKVNRTIHELVKDRGFAVSDDEIHMDLVTFRSHYANNGGSVDRNQLNFFTNSRTN 63
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK-- 139
P+ ++ V + + + + +R L G IL ++++ I++ NM ARK + +
Sbjct: 64 PTDQIFVFFSDEKSVGVKTMRKLLG-ILEEKSIQRGIIVFPGNMTPSARKVIAAMAAQYR 122
Query: 140 ----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKHEVL+ E+ L++KY+++ Q+
Sbjct: 123 LEEFSESDLLVNITHHTLVPKHEVLTPEEKKTLLEKYRLKETQL 166
>gi|91087261|ref|XP_975533.1| PREDICTED: similar to AGAP010064-PA [Tribolium castaneum]
gi|270010583|gb|EFA07031.1| hypothetical protein TcasGA2_TC010003 [Tribolium castaneum]
Length = 210
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ GDK + L + +
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I +AI+ Y Q + E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKAIKT-YCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++ E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKL 165
>gi|412988339|emb|CCO17675.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bathycoccus prasinos]
Length = 205
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 15/157 (9%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVV 89
F R+TV +ML RGY V EL R F FG+ E L + +P R +PS+ + V
Sbjct: 11 FRIRKTVSKMLASRGYLVSQKELERDKDSFLEEFGE-VSREHLTIMVPKRDDPSENIFVF 69
Query: 90 YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK---EVLKFPFKVEIFY-- 144
+ E++ + I+ Y + + +E + I++++S++ FA++ EV + F +E F
Sbjct: 70 FPEEEKVGVKMIKD-YAKRMREENVMRAIIVIRSSLTPFAKQSLLEVQQQKFIIETFQET 128
Query: 145 --------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
HIL PKH +L+ E+ L+++YK+ Q+
Sbjct: 129 ELLVNITDHILVPKHVLLTDEEKKTLLERYKVRETQL 165
>gi|357609342|gb|EHJ66401.1| hypothetical protein KGM_04074 [Danaus plexippus]
Length = 210
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLC 75
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L +
Sbjct: 2 DDDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIVL 61
Query: 76 LPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
+ +P+ +M V + +I + I+ Y + +E +H I+++Q+ M A++ ++
Sbjct: 62 VAHNDDPTDQMFVFFPDEAKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 136 FPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIE 169
K + I H L P+H VL+ E+ +L+ +YK++
Sbjct: 121 MAPKYILEHFLESELLINITEHELVPEHIVLTPDEKQELLARYKLK 166
>gi|357497659|ref|XP_003619118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355494133|gb|AES75336.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 205
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR 79
G E + + RRTV QML DR Y V +SE+ S E + FG+ + + L + +
Sbjct: 2 GLSEEEVTKLYRIRRTVFQMLRDRNYRVLDSEVNMSKQELKAKFGENMNRKDLTIQTTNK 61
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------ 133
+PS K+ V + ++ I+ + IL E ++ I+++Q+ + + AR E+
Sbjct: 62 DDPSDKIYVFFRDDAKLGVSTIKTIKDLILT-EGVYRAIIVVQNELKSKARSELNLFSEV 120
Query: 134 -----LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V + H+L P+H+VL+ E+ L+ Y ++ Q+
Sbjct: 121 RIEAFLEDELLVNVIEHVLVPEHQVLTNAEKKDLLSTYTVKETQL 165
>gi|390594286|gb|EIN03698.1| DNA-directed RNA polymerase RPB5 subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 208
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
ES + + RT+ +++ DRG+ V + E+ L FR + G D L R+N
Sbjct: 6 ESAKLWKVNRTIHELVKDRGFQVSDDEIQMDLATFRQAYANNGGSVDRNQLNFFTNSRAN 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FK 139
P+ ++ V + + + + +R L G IL ++++ I+I NM ARK ++ F+
Sbjct: 66 PADQIFVFFSEEKSVGVKTMRKLLG-ILEEKSIQRGIIIFPGNMTPSARKVIVAMSAQFR 124
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L P+HEVL+ E+ L++KY+++ Q+
Sbjct: 125 LEEFSESDLLVNITHHTLVPRHEVLTPEEKRNLLEKYRLKETQL 168
>gi|242247587|ref|NP_001156054.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
[Acyrthosiphon pisum]
gi|239793387|dbj|BAH72818.1| ACYPI000388 [Acyrthosiphon pisum]
Length = 210
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
ESY+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+ +L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQL 170
>gi|387915534|gb|AFK11376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Callorhinchus milii]
Length = 210
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EFR FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRNQFGDKPSEGHPRRSDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|325181796|emb|CCA16252.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 210
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR 79
G S E+ R F R+T ++ML++RGY V +EL + F+ FGD E + + +
Sbjct: 6 NGLSAEALRLFRVRKTTVKMLHNRGYIVSENELIMTPEGFQQQFGDNPTREMMTILVEKI 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-- 137
+PS + V + ++ + IR Y + E + IL++Q + FAR+ + +
Sbjct: 66 DDPSDNLFVFFPEDTKVGVKPIRN-YCNRMKDENVTKAILVVQEGITPFARQALNEMAPR 124
Query: 138 -----FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FK V+I H L P H VL E+ L+K+Y+I+ Q+
Sbjct: 125 YKIEHFKETELLVDITEHTLVPVHRVLCREEKAALLKRYRIKDSQL 170
>gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum]
gi|226469816|emb|CAX70189.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226469818|emb|CAX70190.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226487596|emb|CAX74668.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
Length = 206
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 86/162 (53%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+Y+ + R+T+L+M DRGY V EL +SL +F+ T GD + L + + +P+
Sbjct: 6 ETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHEEDPAD 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV---LKFPFKVE 141
+ V + E++ + +R Q + +++ + IL+LQ T + K L + +E
Sbjct: 66 MLYVFFPEEEKVNMKTVRAYLNQ-MQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLE 124
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F+ H L P+H+VL+ E+ +L+++Y+++ Q+
Sbjct: 125 CFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQL 166
>gi|326501686|dbj|BAK02632.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 87/162 (53%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R F RRTV+QML DRGY V ++++ ++ EF +GD + L + + NP +
Sbjct: 7 ETSRLFRVRRTVMQMLRDRGYLVVDADVDMTMGEFVGRYGDPVRRDDLVINRAKKDNPDE 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL-KFPFK--VE 141
++ V + + +A++ Y + + +E + IL++Q + +FAR +L P K V+
Sbjct: 67 QIYVFFPNEPKPGQKAVKS-YVEKMTQENVRNGILVVQQALTSFARNNLLGNSPDKLQVQ 125
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H L P+H +L+ ++ L++KY ++ Q+
Sbjct: 126 VFQEKELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQL 167
>gi|317574789|ref|NP_001187413.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
gi|308322947|gb|ADO28611.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
Length = 210
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + +R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKTRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|215713497|dbj|BAG94634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R F RRTV+QML DRGY V ++ +F FGD D + L + N +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEI 142
++ V + + + IR Y + + +E++ IL++Q ++ FAR V + F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRS-YVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F H L P+HE+L+ ++ L+++Y ++ QV
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165
>gi|357482707|ref|XP_003611640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512975|gb|AES94598.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 229
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 12/157 (7%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+TV++ML DR Y V + E+ S EF+ +G+ + E L + + NPS ++ V +
Sbjct: 15 RKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKDNPSDQIYVFFPE 74
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF--------- 143
E++ R + +N E ++ I++ Q+++ A E+ F +E+F
Sbjct: 75 DEKVGVHTFRTCTKR-MNSENVYRAIIVCQTSLTNMALSEI-DSKFHLEVFQEAELLVNV 132
Query: 144 -YHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
YH L P+H+VL+ E+ L+++Y ++ Q + +K
Sbjct: 133 RYHELVPEHQVLTDNEKKTLLERYTVKETQNEVSMKD 169
>gi|57525846|ref|NP_001003564.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Danio
rerio]
gi|50417194|gb|AAH77151.1| Polymerase (RNA) II (DNA directed) polypeptide E [Danio rerio]
Length = 210
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EFR FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|384497437|gb|EIE87928.1| hypothetical protein RO3G_12639 [Rhizopus delemar RA 99-880]
Length = 188
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 15/149 (10%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE--SLRLCLPLRSNPSKKMLVVYLGTEEI 96
M++DRGY V SEL L F+ TF D++ L + + +P+ ++LV + +
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 97 RTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------VEIFY 144
+ +R +Y + + ++ + I I Q +M + A K + + P K V I +
Sbjct: 61 GVKPLR-VYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNITH 119
Query: 145 HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L PKHEVL+A E+ L+++Y+++ Q+
Sbjct: 120 HVLVPKHEVLTAEEKSTLLQRYRLKETQL 148
>gi|225445170|ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Vitis vinifera]
Length = 206
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR 79
E R F R+TV+QML DRGY V + E+ + +F FG+ E L + R
Sbjct: 2 SASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKR 61
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFP 137
++ S ++ V + +++ + ++ Y + E + IL++Q N+ FAR + +
Sbjct: 62 TDSSDQIYVFFPEEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 138 FKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F +E+F H+L P+H+VL++ E+ L+++Y ++ Q+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQL 166
>gi|297835232|ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + ++T++QML DRGY + +SELT + +F GD E L + L ++ N + L
Sbjct: 9 RLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDL-VTLKVKRNDNSDQL 67
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY- 144
++ E +Y + E ++ IL++Q N+ FAR + + F +E+F
Sbjct: 68 YIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEVFQE 127
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 128 AEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQL 165
>gi|125548794|gb|EAY94616.1| hypothetical protein OsI_16393 [Oryza sativa Indica Group]
gi|125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260 [Oryza sativa Japonica Group]
Length = 217
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R F RRTV+QML DRGY V ++ +F FGD D + L + N +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEI 142
++ V + + + IR Y + + +E++ IL++Q ++ FAR V + F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRS-YVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV---TILVK 178
F H L P+HE+L+ ++ L+++Y ++ Q+ T LVK
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQILSLTQLVK 173
>gi|226371984|gb|ACO51617.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rana
catesbeiana]
Length = 210
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQL 170
>gi|307214976|gb|EFN89821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Harpegnathos saltator]
Length = 210
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 87/166 (52%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL +++ +F+ +GDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTIEQFKEHYGDKPSEKRPARSELIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ ++ V + +I + I+ Y Q + +E +H I+++Q M A++ + K
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKT-YCQRMQEEKIHRAIIVVQQGMTPSAKQSLTDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H VL+ E+++L+ +YK++ Q+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQL 170
>gi|392564185|gb|EIW57363.1| DNA-directed RNA polymerase RPB5 subunit [Trametes versicolor
FP-101664 SS1]
Length = 209
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSN 81
ES + + RT+ +++ DRG+ V + E+ L+ FR + ++ D L R N
Sbjct: 7 ESAKLWKVNRTIHELVKDRGFQVSDDEINMDLSTFRDHYANQSGSVDRSQLNFFTNHRDN 66
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FK 139
PS ++ + + + + + +R L G IL ++A+ I++ NM ARK ++ +K
Sbjct: 67 PSVQIFIFFTDEKSVGVKTMRKLLG-ILEEKAIQQGIIVFPGNMTPSARKVIVAMASTYK 125
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L PKHE+L+ ++ +L++ Y+++ Q+
Sbjct: 126 LEEFSESDLLVNITHHTLVPKHELLTPQQKKELLETYRLKETQL 169
>gi|360043810|emb|CCD81356.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 205
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+Y+ + R+T+L+M DRGY V EL +SL +F+ T GD + L + + +P+
Sbjct: 5 ETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPAD 64
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV---LKFPFKVE 141
+ V + E++ + +R Q + +++ + IL+LQ T + K L + +E
Sbjct: 65 MLYVFFPEEEKVNMKTVRAYLNQ-MQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLE 123
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F+ H L P+H VL+ E+ +L+++Y+++ Q+
Sbjct: 124 CFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQL 165
>gi|256071874|ref|XP_002572263.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
Length = 208
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+Y+ + R+T+L+M DRGY V EL +SL +F+ T GD + L + + +P+
Sbjct: 8 ETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPAD 67
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV---LKFPFKVE 141
+ V + E++ + +R Q + +++ + IL+LQ T + K L + +E
Sbjct: 68 MLYVFFPEEEKVNMKTVRAYLNQ-MQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLE 126
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F+ H L P+H VL+ E+ +L+++Y+++ Q+
Sbjct: 127 CFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQL 168
>gi|195426896|ref|XP_002061524.1| GK20665 [Drosophila willistoni]
gi|194157609|gb|EDW72510.1| GK20665 [Drosophila willistoni]
Length = 210
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++A E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKL 165
>gi|405965226|gb|EKC30623.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Crassostrea gigas]
Length = 210
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L EF+ FGD K L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSERKPSRSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + + + I+ Y Q + +E + I+++Q+ M A++ + K
Sbjct: 66 DDPTDQMFVFFPEEPNVGIKTIKT-YCQRMQEENITRAIIVVQNRMTPSAKQSLTDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H+L P+H V++ E+ +L+ +YK++ Q+
Sbjct: 125 YILEQFLEAELLINITEHMLVPEHVVMTPEEKTELLSRYKLKESQL 170
>gi|194752750|ref|XP_001958682.1| GF12445 [Drosophila ananassae]
gi|190619980|gb|EDV35504.1| GF12445 [Drosophila ananassae]
Length = 210
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++A E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKL 165
>gi|31235339|ref|XP_319221.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|157128329|ref|XP_001661404.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|170059825|ref|XP_001865530.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
gi|30174740|gb|EAA43596.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|108872649|gb|EAT36874.1| AAEL011087-PA [Aedes aegypti]
gi|167878475|gb|EDS41858.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
Length = 210
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLC 75
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L +
Sbjct: 2 DDDAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
Query: 76 LPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
+ +P+ +M V + +I + I+ Y + +E +H I+++Q+ M A++ ++
Sbjct: 62 VAHNDDPTDQMFVFFPDEPKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 136 FPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
K + I H L P+H V++ E+ +L+ +YK+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKL 165
>gi|197098756|ref|NP_001126823.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Pongo
abelii]
gi|75054736|sp|Q5R587.1|RPAB1_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|55732763|emb|CAH93079.1| hypothetical protein [Pongo abelii]
Length = 210
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EFR FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|72109111|ref|XP_783584.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Strongylocentrotus purpuratus]
gi|390354452|ref|XP_003728337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 210
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK-----CDLESLRLCLPLR 79
E+YR + RRT++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR--------- 130
+P+ +M V + +++ + I+ Y Q + +E + I+ +Q M A+
Sbjct: 66 DDPTDQMFVFFPEEKKVGMKTIKA-YCQRMQEENITRAIITVQEKMTPSAKTSLGDMAPK 124
Query: 131 ---KEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
++ L+ + I H P+H V++ E+ +L+ +YK++ Q+
Sbjct: 125 YILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQL 170
>gi|115440569|ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|215737136|dbj|BAG96065.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
RRTV+QML DRGY V EL +F +G+ E L + +++PS ++ V +
Sbjct: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY------ 144
+++ + I+ Y +++ E + +L+LQ N+ FAR + L+ +EIF
Sbjct: 79 DDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 145 ----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 138 NIKEHVLVPEHQVLNNEEKKTLLERYTLKETQL 170
>gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa Japonica Group]
Length = 205
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R F RRTV+QML DRGY V ++ +F FGD D + L + N +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEI 142
++ V + + + IR Y + + +E++ IL++Q ++ FAR V + F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRS-YVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F H L P+HE+L+ ++ L+++Y ++ Q+
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQL 165
>gi|326492457|dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511589|dbj|BAJ91939.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 84/153 (54%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
RRTV+ ML DRGY V EL+ + +F+ +G+ E + + +++P+ ++ V +
Sbjct: 19 RRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCKKNDPNDQIYVFFPN 78
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY------ 144
E++ + I+ Y +++N E + IL++Q N+ FA+ + L+ +E+F
Sbjct: 79 DEKVGMKHIKK-YVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLI 137
Query: 145 ----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+ +Y ++ Q+
Sbjct: 138 NIKEHVLVPEHQVLANEEKKTLLARYTLKETQL 170
>gi|225706160|gb|ACO08926.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Osmerus mordax]
Length = 210
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKLKESQL 170
>gi|156089419|ref|XP_001612116.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
gi|154799370|gb|EDO08548.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
Length = 205
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLCLPLRSNP 82
E R F RRT +ML DRGY +PN E + EF R+ D+ + L L L+++
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKML-LVASLKTDK 62
Query: 83 SKKMLVVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK- 139
K+L VY E +T + IR L ++ + + +H IL+ Q+ + FA+ +L+ +
Sbjct: 63 DAKLL-VYFADETKKTGVKPIRELTEKMEDHD-IHRAILVTQNVLTPFAKDAILEAAPRN 120
Query: 140 -----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH L+A E+ L+++YK++ Q+
Sbjct: 121 IIENFLETELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQI 165
>gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
(Silurana) tropicalis]
gi|148225220|ref|NP_001083516.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
laevis]
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis]
gi|89272916|emb|CAJ82278.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
gi|163916440|gb|AAI57232.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
Length = 210
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQL 170
>gi|229366774|gb|ACQ58367.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anoplopoma fimbria]
Length = 210
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V+S E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKLKESQL 170
>gi|410921186|ref|XP_003974064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Takifugu rubripes]
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|289740815|gb|ADD19155.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++ E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKL 165
>gi|312383157|gb|EFR28348.1| hypothetical protein AND_03878 [Anopheles darlingi]
Length = 210
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLC 75
E+Y+ + R+TV+Q+ +DRGY V EL ++L +F+ FGDK + L +
Sbjct: 2 DDDAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVL 61
Query: 76 LPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
+ +P+ +M V + +I + I+ Y + +E +H I+++Q+ M A++ ++
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 136 FPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
K + I H L P+H V++ E+ +L+ +YK+
Sbjct: 121 MAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKL 165
>gi|432855568|ref|XP_004068251.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Oryzias latipes]
Length = 210
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|292611220|ref|XP_002661023.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Danio rerio]
Length = 210
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+TV+Q+ +DRGY V EL ++L EF+ FGD+ L + +
Sbjct: 6 ETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEELKVGIKTIK-MYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKETQL 170
>gi|348504738|ref|XP_003439918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Oreochromis niloticus]
Length = 210
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|452822190|gb|EME29212.1| DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria]
Length = 212
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 20/166 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDL-----ESLRLCLPLR 79
E + F R+T+L+ML DRGY V E + L R FG + ESL L +
Sbjct: 10 EVTKLFRIRKTILEMLRDRGYVV--LETSSDLEMTREEFGSRLQQANYSRESLTLLKQHQ 67
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-- 137
+PS ++ V + E + + +R + + +++E ++ IL++ +++ FA++ + K
Sbjct: 68 HDPSDQIYVFFPAEERVSVKTLRDYFVR-MDQERVYKAILVVIKSLSPFAKQGIQKVASQ 126
Query: 138 FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FKVE+F +H L PKHEVLS + +L+K+Y ++ Q+
Sbjct: 127 FKVEVFLEMELLVNITHHELVPKHEVLSTEGKKQLLKRYHLKESQL 172
>gi|260788314|ref|XP_002589195.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
gi|229274370|gb|EEN45206.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
Length = 210
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL + L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ +Y Q + +E + I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFADEPKIGIKTIK-MYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E+ +L+ +Y+++ Q+
Sbjct: 125 YILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQL 170
>gi|351723363|ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + R+TV+QML DRG+ V + E+ S EF+ +G+ E L + + N ++
Sbjct: 10 RLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQIY 69
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY- 144
V + ++ + ++ Y +N E ++ IL+ Q+N+ FAR + + F +E+F
Sbjct: 70 VFFPDEPKVGVKTMKT-YTNRMNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQE 128
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 129 AELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQL 166
>gi|348680008|gb|EGZ19824.1| hypothetical protein PHYSODRAFT_494802 [Phytophthora sojae]
Length = 206
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R + R+T ++ML++RGY V +EL + F+ FGD E + + + +PS
Sbjct: 7 EASRLYRVRKTTVKMLHNRGYIVSENELVMTPEAFQAQFGDNPTREMMTILVEKIDDPSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP------- 137
+ V + ++ + IR Y + E + IL++Q + FAR+ + +
Sbjct: 67 NLFVFFPEDTKVGVKPIRN-YCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEH 125
Query: 138 FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FK V+I H L P H VL E+ L+K+Y+I Q+
Sbjct: 126 FKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQL 166
>gi|320168277|gb|EFW45176.1| DNA-directed RNA polymerase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 211
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 17/172 (9%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLR---L 74
M+ R + +TV+QM +DR Y V EL ++L FR DL +R L
Sbjct: 1 MDSAEQQHLQRMYRIYQTVMQMCHDRHYIVTADELEQNLETFRAKVCTGNDLTPVRERML 60
Query: 75 C-LPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV 133
C + +P+K +LV++ ++ IR + Q+ + G+I++ Q + +FAR +
Sbjct: 61 CNFAYKDDPTKSILVMFATEVKVGVAPIRQMIEQMSTQSIQRGIIVV-QDCLTSFARSTL 119
Query: 134 LK-FP------FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ P FK V I H L PKHEVLS ++ L+K+YK++ Q+
Sbjct: 120 AEAMPQFIIEEFKEAELLVNITRHTLVPKHEVLSDDDKIALLKQYKLKEAQL 171
>gi|195026900|ref|XP_001986362.1| GH20567 [Drosophila grimshawi]
gi|193902362|gb|EDW01229.1| GH20567 [Drosophila grimshawi]
Length = 210
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK-CDLESLR----LCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK D R + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++A ++ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKL 165
>gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLEQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQL 170
>gi|330040362|ref|XP_003239875.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
gi|327206800|gb|AEA38977.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
Length = 216
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 22/170 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSE----LTRSLTEFRFTFGDKCDLESLRLCLPLRS 80
E + F RRTVLQ+L DR Y V NS+ ++R EF++ K E + + PL +
Sbjct: 7 EVFNLFRIRRTVLQLLKDRNYLVFNSKDDLNMSRIDFEFKYVKNYKVVREKMEIKRPLWN 66
Query: 81 NPSKKMLVVYLGTEE----IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
+ KK+LVV++ E+ I + IR Y + + ++ L L+++L + + + A++ +
Sbjct: 67 SLDKKILVVFIEKEKSGTMIGVKLIRK-YCERMKQDQLSNLVIVLHAKLTSHAKQAIDTI 125
Query: 137 PF---KVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
K+E F +H L PKHE+LS E L K+Y I+ Q+
Sbjct: 126 NSSGDKIEYFNESELIINITHHTLVPKHEILSLEESKCLFKRYYIKETQL 175
>gi|195119282|ref|XP_002004160.1| GI19761 [Drosophila mojavensis]
gi|195401380|ref|XP_002059291.1| GJ18195 [Drosophila virilis]
gi|193909228|gb|EDW08095.1| GI19761 [Drosophila mojavensis]
gi|194142297|gb|EDW58703.1| GJ18195 [Drosophila virilis]
Length = 210
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++A ++ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKL 165
>gi|350537103|ref|NP_001232745.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|118103219|ref|XP_418224.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Gallus gallus]
gi|126323555|ref|XP_001365263.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Monodelphis domestica]
gi|395513329|ref|XP_003760879.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Sarcophilus harrisii]
gi|197127122|gb|ACH43620.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|387018228|gb|AFJ51232.1| putative DNA directed RNA polymerase II polypeptide E [Crotalus
adamanteus]
Length = 210
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|355702921|gb|EHH29412.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
Length = 210
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVSELLARYKLRENQL 170
>gi|417408698|gb|JAA50889.1| Putative dna-directed rna polymerases i ii and iii subunit
rpabc1-like isoform 2, partial [Desmodus rotundus]
Length = 212
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 8 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 67
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 68 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 126
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 127 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 172
>gi|441656609|ref|XP_004093285.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1 [Nomascus leucogenys]
Length = 210
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQXGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEMTELLARYKLRENQL 170
>gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
Length = 205
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + ++T++QML DRGY + +SELT + +F GD E L R++ S ++
Sbjct: 9 RLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSDQLY 68
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY- 144
+ + ++ + ++ +Y + E + IL++Q N+ FAR + + F +E+F
Sbjct: 69 IFFPDEAKVGVKTMK-MYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQE 127
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 128 AEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQL 165
>gi|308321620|gb|ADO27961.1| DNA-directed RNA polymerases I, II and III subunit rpabc1
[Ictalurus furcatus]
Length = 210
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ + K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRIQEENITRAIIVVQMGMTPSAKQSPVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQL 170
>gi|149034611|gb|EDL89348.1| rCG29511, isoform CRA_d [Rattus norvegicus]
Length = 242
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 170
>gi|14589951|ref|NP_002686.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo
sapiens]
gi|149761124|ref|XP_001496313.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Equus caballus]
gi|301776310|ref|XP_002923555.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Ailuropoda melanoleuca]
gi|301776312|ref|XP_002923556.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Ailuropoda melanoleuca]
gi|335282254|ref|XP_003354010.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Sus scrofa]
gi|335282256|ref|XP_003354011.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Sus scrofa]
gi|348550374|ref|XP_003461007.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cavia porcellus]
gi|395831291|ref|XP_003788737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Otolemur garnettii]
gi|402903526|ref|XP_003914616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Papio anubis]
gi|403308121|ref|XP_003944520.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403308123|ref|XP_003944521.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Saimiri boliviensis boliviensis]
gi|403308125|ref|XP_003944522.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Saimiri boliviensis boliviensis]
gi|403308127|ref|XP_003944523.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Saimiri boliviensis boliviensis]
gi|426229485|ref|XP_004008821.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Ovis aries]
gi|426229487|ref|XP_004008822.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Ovis aries]
gi|426386425|ref|XP_004059685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Gorilla gorilla gorilla]
gi|426386427|ref|XP_004059686.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Gorilla gorilla gorilla]
gi|426386429|ref|XP_004059687.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Gorilla gorilla gorilla]
gi|426386431|ref|XP_004059688.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Gorilla gorilla gorilla]
gi|678549|gb|AAA62401.1| RNA polymerase II 23kD subunit [Homo sapiens]
gi|13325244|gb|AAH04441.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
gi|119589954|gb|EAW69548.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|119589955|gb|EAW69549.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|189069173|dbj|BAG35511.1| unnamed protein product [Homo sapiens]
gi|208967082|dbj|BAG73555.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|296485369|tpg|DAA27484.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bos taurus]
gi|312152670|gb|ADQ32847.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|355755269|gb|EHH59016.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
fascicularis]
gi|387542622|gb|AFJ71938.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
gi|410264992|gb|JAA20462.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410264994|gb|JAA20463.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299730|gb|JAA28465.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299732|gb|JAA28466.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|440910422|gb|ELR60220.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
grunniens mutus]
Length = 210
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|355712729|gb|AES04446.1| polymerase II polypeptide E, 25kDa [Mustela putorius furo]
Length = 209
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|345786834|ref|XP_854641.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Canis lupus familiaris]
Length = 210
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|124249077|ref|NP_079830.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Mus
musculus]
gi|157819761|ref|NP_001103084.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rattus
norvegicus]
gi|54036414|sp|Q80UW8.1|RPAB1_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|182676546|sp|B0BNE2.1|RPAB1_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|28374319|gb|AAH45521.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|74194812|dbj|BAE25998.1| unnamed protein product [Mus musculus]
gi|74198334|dbj|BAE43245.1| unnamed protein product [Mus musculus]
gi|74205025|dbj|BAE20985.1| unnamed protein product [Mus musculus]
gi|74208142|dbj|BAE26292.1| unnamed protein product [Mus musculus]
gi|148699661|gb|EDL31608.1| mCG13422, isoform CRA_a [Mus musculus]
gi|149034612|gb|EDL89349.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034613|gb|EDL89350.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034614|gb|EDL89351.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|165971683|gb|AAI58788.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Rattus
norvegicus]
Length = 210
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 170
>gi|46255774|gb|AAH34144.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
Length = 210
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|410949981|ref|XP_003981695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Felis catus]
Length = 212
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|410342181|gb|JAA40037.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342183|gb|JAA40038.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342185|gb|JAA40039.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
Length = 217
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|357480733|ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355511987|gb|AES93610.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 410
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + R+TV+QML DR Y V + EL S +F+ +G+ E L + + PS
Sbjct: 211 EITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPSD 270
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEI 142
++ V + ++ + ++ Y +N E ++ IL+ Q+++ FA+ V + F +E+
Sbjct: 271 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEV 329
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F H+L P+H++L+ E+ L+++Y ++ Q+
Sbjct: 330 FQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQL 370
>gi|391342990|ref|XP_003745798.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Metaseiulus occidentalis]
Length = 210
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL + L F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQEELDQDLEGFKEQFGDKPSDKHPARGDLVVLVSHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------ 133
+P+ +M V + +I + I+ Y Q + +E + I+++Q+ M AR+ +
Sbjct: 66 DDPTDQMFVFFPDEAKIGIKTIKT-YCQRMQEENISRAIIVVQAGMTPSARQALGDMAPK 124
Query: 134 ------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKI 168
L+ + I H L P+H VL+ E+ +L+ +YK+
Sbjct: 125 YILEHFLESELLINIIEHELVPEHVVLTPEEKTELLSRYKL 165
>gi|289740817|gb|ADD19156.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKT-YCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
I H L P+H V++ E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLTNITEHELVPEHVVMTPEEKQELLARYKL 165
>gi|195164101|ref|XP_002022887.1| GL16482 [Drosophila persimilis]
gi|198471627|ref|XP_002133786.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
gi|194104949|gb|EDW26992.1| GL16482 [Drosophila persimilis]
gi|198146002|gb|EDY72413.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++ E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKL 165
>gi|326503328|dbj|BAJ99289.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R F RRTV+QML DRGY V ++++ ++ EF +GD + L + + NP +
Sbjct: 7 ETSRLFRVRRTVMQMLRDRGYLVVDADVDLTMGEFVGRYGDPVRRDDLVINRAKKDNPDE 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP---FKVE 141
++ + + + + ++ Y + + +E ++ IL++Q + F+R +L ++E
Sbjct: 67 QIYIFFPNEPKPGVKTVKS-YAEKMKQENVYNGILVVQQALTAFSRNLLLGLSQEKLQLE 125
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H L P+H +L+ ++ L++KY ++ Q+
Sbjct: 126 VFQEGELLINIKNHDLVPEHVLLTKEQKKTLLEKYTVKETQL 167
>gi|297275632|ref|XP_001117242.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Macaca mulatta]
Length = 203
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
++YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 DTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|19922004|ref|NP_610630.1| Rpb5, isoform A [Drosophila melanogaster]
gi|442623281|ref|NP_001260878.1| Rpb5, isoform B [Drosophila melanogaster]
gi|194884129|ref|XP_001976148.1| GG22706 [Drosophila erecta]
gi|195333273|ref|XP_002033316.1| GM20482 [Drosophila sechellia]
gi|195483584|ref|XP_002090346.1| GE13062 [Drosophila yakuba]
gi|195551744|ref|XP_002076283.1| GD15257 [Drosophila simulans]
gi|7303678|gb|AAF58728.1| Rpb5, isoform A [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila melanogaster]
gi|190659335|gb|EDV56548.1| GG22706 [Drosophila erecta]
gi|194125286|gb|EDW47329.1| GM20482 [Drosophila sechellia]
gi|194176447|gb|EDW90058.1| GE13062 [Drosophila yakuba]
gi|194201932|gb|EDX15508.1| GD15257 [Drosophila simulans]
gi|220948406|gb|ACL86746.1| Rpb5-PA [synthetic construct]
gi|220957602|gb|ACL91344.1| Rpb5-PA [synthetic construct]
gi|440214282|gb|AGB93411.1| Rpb5, isoform B [Drosophila melanogaster]
Length = 210
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y + +E +H I+++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKT-YCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H V++ E+ +L+ +YK+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKL 165
>gi|388506474|gb|AFK41303.1| unknown [Medicago truncatula]
Length = 206
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + R+TV+QML DR Y V + EL S +F+ +G+ E L + + PS
Sbjct: 7 EITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTKKDKPSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEI 142
++ V + ++ + ++ Y +N E ++ IL+ Q+++ FA+ V + F +E+
Sbjct: 67 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASKFHLEV 125
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F H+L P+H++L+ E+ L+++Y ++ Q+
Sbjct: 126 FQEAELLVNIKEHVLVPEHQILNDTEKKTLLERYTVKETQL 166
>gi|198471708|ref|XP_002133816.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
gi|198146041|gb|EDY72443.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLES-----LRLCLPLR 79
E Y+ + R+T+ +M +DRGY V ++EL +++ +F FGDK +S L + L
Sbjct: 6 EVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLSHA 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-- 137
+P +MLV + ++ + I+ Y + E +H IL+++ + A++ ++
Sbjct: 66 DDPKNRMLVFFPEEPKVAVKTIKA-YAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAPL 124
Query: 138 ----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ + H L P+H VLS E+ +L + Y+++ Q+
Sbjct: 125 YIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQM 170
>gi|353236892|emb|CCA68877.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Piriformospora indica DSM 11827]
Length = 211
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 23/170 (13%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPL 78
L R + RT+ +++ DRGYAV + E+ +L EF+ F G D SL L
Sbjct: 7 ADLAVSRLWKVNRTIHELVRDRGYAVADEEINMTLDEFKQQFARAGSVVDRASLGFWAHL 66
Query: 79 RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLIL---------------ILQS 123
R++P+ + V + + Q ++ L G + K + G+I+ + Q
Sbjct: 67 RNDPATSIYVYFCDERSVGVQHMKKLLGILDEKNIVRGIIIYPNVLTPAARKVLTGMPQY 126
Query: 124 NMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ FA E+L V I H L P+HE+LS ++ L+++Y+++ Q+
Sbjct: 127 QLEEFAETELL-----VNITQHTLVPQHEILSPEQKRLLLERYRLKETQL 171
>gi|403418276|emb|CCM04976.1| predicted protein [Fibroporia radiculosa]
Length = 207
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 13/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSN 81
ES R + RT+ +++ DRG+ V + E+ L FR + D L ++N
Sbjct: 6 ESARLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYASNLGSVDRSQLNFFTNHKNN 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILI----------LQSNMNTFARK 131
P ++ V + + + + +R + + K + G+I+ + S M FA +
Sbjct: 66 PMTQIFVFFSDEKSVGVKTMRKMLTILEEKNIMQGIIVFPGNMTPSARKVISAMTNFALE 125
Query: 132 EVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
E + V I +H L PKHEVLS E+ +L++ Y+++ Q+
Sbjct: 126 EFAEADLLVNITHHTLVPKHEVLSPKEKKELLETYRLKETQL 167
>gi|403332978|gb|EJY65550.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Oxytricha
trifallax]
Length = 215
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 30/167 (17%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR------------- 79
R+TVLQML DRGY V + +L +++ EF+ TF + D SL L + R
Sbjct: 13 RKTVLQMLKDRGYIVSDKKLKQTIEEFKATFNNTRD--SLNLIVTKRQQVDPNDPNSQVA 70
Query: 80 --SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
S +K++V + E++ A++ + ++L + +++I +R+E+ +
Sbjct: 71 QNSEEQQKLIVFFPDVEKLNMAALKQIAIKMLEVNCFNAIVII--KGATQISRRELDELK 128
Query: 137 PFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P ++E F H L P+HEVLS + +L+KKY+++ Q+
Sbjct: 129 PCEIECFLQQELLVNITEHELVPRHEVLSDKAKHELLKKYRVKDSQL 175
>gi|346469147|gb|AEO34418.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 84/162 (51%), Gaps = 18/162 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARNDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------ 133
+P+ +M V + +I + I+ Y Q + +E + I+++Q+ M A++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKT-YCQRMQEENITRAIIVVQTGMTPSAKQALGDMAPK 124
Query: 134 ------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIE 169
L+ + I H L P+H VL+ E+ +L+ +YK++
Sbjct: 125 YILEHFLESELLINITEHELVPEHVVLTPEEKAELLARYKLK 166
>gi|84997627|ref|XP_953535.1| DNA-directed RNA polymerase, subunit (RPB5 homologue) [Theileria
annulata strain Ankara]
gi|65304531|emb|CAI76910.1| DNA-directed RNA polymerase, subunit (RPB5 homologue), putative
[Theileria annulata]
Length = 205
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLCLPLRSNP 82
E R F RRT +ML DRGY +P+ E + EF R+ DK + L L LR+
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKML-LVASLRTAA 62
Query: 83 SKKMLVVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK-FP-- 137
K+L VY E+ +T + IR L ++ + + +H IL+ Q+ + FA+ +++ +P
Sbjct: 63 ENKLL-VYFADEKKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTPFAKDAIMEAYPKN 120
Query: 138 ---------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH L+ E+ L++KYK++ Q+
Sbjct: 121 IIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQI 165
>gi|346470667|gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F RRTV++ML DR Y V + EL + +F FG+ + L + + +PS ++
Sbjct: 9 RLFRIRRTVMEMLRDRNYLVVDYELNMTKLDFLHKFGEGVKRDDLTINKYKKGDPSDQIY 68
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY- 144
V + +++ + I+ +++ E + IL++Q N+ FA+ +L+ F +E+F
Sbjct: 69 VFFPNDDKVGMKHIKKCV-ELMKTENVTRSILVVQQNLTPFAKAHLLELTPKFILEVFLE 127
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 128 AELLVNIKKHVLIPEHQVLTNEEKKTLLERYTLKETQL 165
>gi|384249623|gb|EIE23104.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 83/158 (52%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + R+T L+ML+DRGY + + + F+ FGD + L + P + +P++++
Sbjct: 6 RLYRIRKTCLEMLHDRGYLIAQDDRQMTKEGFKDRFGDDPRKDDLTVLAPKQDDPTEQIF 65
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK--VEIF-- 143
V Y +++ + I+ + + + E + I++ ++M FA++ + + K +E+F
Sbjct: 66 VFYPEEDKVGVKTIKT-FAERMRNEGVSRAIMVTMASMTPFAKQCLAEMAPKYYIEVFNA 124
Query: 144 --------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H +L+ E+ L+ +YK++ Q+
Sbjct: 125 AELLINITQHVLVPEHHLLTPEEKRTLLDRYKVKDTQL 162
>gi|326488034|dbj|BAJ89856.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 108
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 14 SSHVMEGG-GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESL 72
SS V GG S ES+R FL+RRT L+ML DRGY+VP SEL R+L EFR + + ++E L
Sbjct: 16 SSMVDRGGRASQESHRLFLARRTALEMLRDRGYSVPESELARTLPEFRAWWAQEPEIERL 75
Query: 73 RLCLPLRSNPSKKMLVVYL 91
L S+ S K+ ++ L
Sbjct: 76 SFSTFLASDHSDKVSLLLL 94
>gi|399218319|emb|CCF75206.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 24/168 (14%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLCLPLRSNPSKK 85
R F RRT +ML DRGY +P E L+EF R+ DK + L L +R++P+ K
Sbjct: 7 RLFRCRRTCCEMLEDRGYFIPIQEKLEILSEFKSRYEMYDKIRSKML-LVASMRNDPNDK 65
Query: 86 MLVVYLGTEEIRT--QAIRGLYGQI------LNKEALHGLILILQSNMNTFARKEV---- 133
++VY E +T + IR L + + +H IL+ Q+ + FA++ +
Sbjct: 66 -IIVYFADETKKTGVKPIRELVPSLRRLTERMEDHGIHRAILVTQNVLTPFAKEAISEAA 124
Query: 134 --------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
++ V I H L PKH L+A E+ L+++YK++ Q+
Sbjct: 125 PRNIIENFMETELLVNITKHELVPKHVPLTAEEKRNLLQRYKVKESQI 172
>gi|301106302|ref|XP_002902234.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
gi|262098854|gb|EEY56906.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
Length = 206
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R + R+T ++ML++R Y V +EL + F+ FGD E + + + +PS
Sbjct: 7 EASRLYRVRKTTVKMLHNRSYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKIDDPSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP------- 137
+ V + ++ + IR Y + E + IL++Q + FAR+ + +
Sbjct: 67 NLFVFFPEDTKVGVKPIRN-YCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEH 125
Query: 138 FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FK V+I H L P H VL E+ L+K+Y+I Q+
Sbjct: 126 FKETELLVDITEHTLVPVHRVLDRNEKAALLKRYRIRDSQL 166
>gi|449450868|ref|XP_004143184.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524595|ref|XP_004169307.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E + F R+TVLQML DRGY V + EL S +F+ FG+ E L + R+N S
Sbjct: 7 EITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP---FKVE 141
++ V + ++ + + G+ + E + I ++Q N+ FAR ++ + +E
Sbjct: 67 QIYVFFPEEPKVGIKIVETYVGR-MKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLE 125
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H+L P+H+ L+ E+ L+ +Y ++ Q+
Sbjct: 126 VFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQL 167
>gi|149287100|gb|ABR23449.1| 25-kDa subunit RNA polymerase [Ornithodoros parkeri]
Length = 210
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + I+ Y Q + +E + I+++Q M A++ + K
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKT-YCQRMQEENITRAIIVVQQGMTPSAKQALTDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
+ I H L P+H VL+ E+ +L+ +YK+
Sbjct: 125 YILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKL 165
>gi|357125497|ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R TV+ ML DRGY V EL + +F +G+ E L + +++P+ ++ V +
Sbjct: 19 RSTVMHMLRDRGYLVVEHELAMTRRDFERKYGESFHREDLLINKCKKNDPNDQIYVFFPN 78
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY------ 144
E++ + I+ Y +++N E + ++++Q N+ FA+ + L+ +E+F
Sbjct: 79 DEKVGMKHIKK-YVEMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPKIHLEVFQDAEMLI 137
Query: 145 ----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 138 NIKEHVLVPEHQVLTNDEKKTLLERYTLKETQL 170
>gi|409078308|gb|EKM78671.1| hypothetical protein AGABI1DRAFT_114282, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426199299|gb|EKV49224.1| hypothetical protein AGABI2DRAFT_191302, partial [Agaricus bisporus
var. bisporus H97]
Length = 208
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLP 77
G E+ + + RT+ +++ DRG+ V + E+ L FR + + D L
Sbjct: 2 GDVDETAKLWKVNRTIHELVRDRGFLVSDEEIHMDLQHFRDQYANNSGMVDRNQLNFYTT 61
Query: 78 LRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
R+NP+ ++ V + + + +R L IL ++++ I++ NM ARK ++
Sbjct: 62 SRANPTDQIFVYFTDERSVGVKTMRKLLS-ILEEKSIQRGIIVFPGNMTPSARKVIVAMS 120
Query: 138 FK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ V I +H L P+HEVL+ E+ L++KY+++ Q+
Sbjct: 121 AQYRLEEFSEADLLVNIVHHTLVPRHEVLTPEEKKVLLEKYRLKETQL 168
>gi|328865416|gb|EGG13802.1| RapGAP/RanGAP domain-containing protein [Dictyostelium
fasciculatum]
Length = 1144
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 15/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF-GDKCDLESLRLCLPLRSNPS 83
E R + R+T+LQML+DRGY + NSEL + +F+ F E L + + +
Sbjct: 3 EGTRLYHIRKTILQMLSDRGYMITNSELELTKEDFKKDFTAHNNSREHLNSSYNKKDDAA 62
Query: 84 KKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP------ 137
++ + ++ IR Q+ + I+I+QSN+ FA++ + +F
Sbjct: 63 DRIFTFFPADVKVGVTPIRKFVDQMKGPHGGNRAIIIVQSNLTAFAKQALSEFSQAKKIV 122
Query: 138 --------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH +L+ E+ +L+ +YK++ Q+
Sbjct: 123 LEQFNEAELLVNITHHQLVPKHILLTKEEKKELLTRYKMKETQL 166
>gi|192910670|gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
guineensis]
Length = 204
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 85/158 (53%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F RRTV+QML DRGY V + E+ + +F FG+ E L + +++P+ ++
Sbjct: 8 RLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKNDPADQIY 67
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY- 144
V + ++ + I+ Y + + E + IL++Q + FAR+ + + + +E+F
Sbjct: 68 VFFPNDAKVGVKQIKQ-YVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQD 126
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VL++ E+ L+++Y ++ Q+
Sbjct: 127 TELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQL 164
>gi|351722355|ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + R+TV+QML DR + V + E+ S EF+ +G+ E L + + N ++
Sbjct: 10 RLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQIY 69
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY- 144
V + ++ + ++ Y +N E ++ IL+ Q+N+ FAR + + F +E+F
Sbjct: 70 VFFPDEPKVGVKTMKT-YTNRMNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQE 128
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 129 AELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQL 166
>gi|209732756|gb|ACI67247.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|303659190|gb|ADM15954.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 210
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + +++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQL 170
>gi|196010385|ref|XP_002115057.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582440|gb|EDV22513.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 210
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLES-----LRLCLPLR 79
E+Y+ + R+TV+QM +DRGY V EL ++ +F F + S L + +
Sbjct: 6 EAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVHHI 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P++++ V + ++ I+ Y Q + +E ++ I+I+QS M A++ ++ K
Sbjct: 66 DDPTEQLFVFFPDEPKVGINTIKK-YCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L PKH V+S E+ +L+ +YK++ Q+
Sbjct: 125 YTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQL 170
>gi|209733016|gb|ACI67377.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|225715082|gb|ACO13387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + +++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQL 170
>gi|443703356|gb|ELU00950.1| hypothetical protein CAPTEDRAFT_226435 [Capitella teleta]
Length = 210
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E Y+ + R+TV+Q+ +DRGY V EL +++ +F+ FGDK L + +
Sbjct: 6 EIYKLWRIRKTVMQLCHDRGYLVTQDELDQTIDQFKDQFGDKPSERRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P +M V + ++ + I+ Y Q + +E + I+++Q+ M A++ ++ K
Sbjct: 66 DDPIDQMFVFFPDEPKVGIKTIKT-YCQRMQEENISRAIIVVQAGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H +L+ E+ +L+ +YK++ Q+
Sbjct: 125 YILEQFLEAELLINITEHTLVPEHVLLTPEEKAELLTRYKLKESQL 170
>gi|224119828|ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+TV+QML DRGY V + E+ + +F +G+ E L + R++ S ++ V +
Sbjct: 15 RKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDSSDQIYVFFPE 74
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY------ 144
++ + ++ Y + E + IL++Q N+ FAR + + F +E+F
Sbjct: 75 EAKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLV 133
Query: 145 ----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H+VLS E+ L+++Y ++ Q+
Sbjct: 134 NIKEHVLVPEHQVLSNEEKKTLLERYTVKETQL 166
>gi|90083116|dbj|BAE90640.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E + + +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTEPLARYKLRENQL 170
>gi|71029810|ref|XP_764548.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68351502|gb|EAN32265.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 205
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R F RRT +ML DRGY +P E + EF+ + + S L + + S+
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTASE 63
Query: 85 KMLVVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK-FP---- 137
L+VY E+ +T + IR L ++ + + +H IL+ Q+ + FA+ +++ +P
Sbjct: 64 NKLLVYFADEKKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTPFAKDAIMEAYPKNII 122
Query: 138 -------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH L+ E+ L++KYK++ Q+
Sbjct: 123 ENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQI 165
>gi|357164319|ref|XP_003580017.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 205
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 86/162 (53%), Gaps = 15/162 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
++ R F RRTV++ML DRGY V ++++ S+ EF +GD E L + + NP++
Sbjct: 6 QTSRLFRIRRTVMEMLRDRGYLVVDADIELSMREFIDRYGDPVRREDLVINRVKKDNPNE 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF---PFKVE 141
++ V + + + +RG Y + +E + I++ + ++ FAR VL+ F +E
Sbjct: 66 QIYVFFPSEAKPGVKTVRG-YADKMKQENVTNGIIVAEQALSAFARN-VLQDNSKSFFLE 123
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H L P+H +L+ ++ L++KY ++ Q+
Sbjct: 124 VFQEGELLVNIKNHELVPEHVLLTHEQKKTLLEKYTVKETQL 165
>gi|393221284|gb|EJD06769.1| RPB5 subunit of DNA-directed RNA polymerase [Fomitiporia
mediterranea MF3/22]
Length = 212
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLP 77
GG E+ R + RT+ +++ DRG+ V + E+ L F+ F + D L
Sbjct: 6 GGPDEAARLWRVNRTIHELIKDRGFQVSDEEIEVDLVTFKQQFANSSGSVDRNQLNFFAT 65
Query: 78 LRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
S+PS + + + + + + ++ + IL +++++ I+I M ARK +++
Sbjct: 66 HESDPSDHIFIYFSDQKSVGIKTMQKV-CIILEEKSINKGIVIFPGTMTPSARKFIVQMS 124
Query: 138 FK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ V I HIL P HEVL+ E+D L++KY+++ Q+
Sbjct: 125 VRYRLEEFSESDLLVNITRHILVPHHEVLTPEEKDTLLEKYRLKETQL 172
>gi|225717382|gb|ACO14537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + +++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK++ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQL 170
>gi|384497180|gb|EIE87671.1| hypothetical protein RO3G_12382 [Rhizopus delemar RA 99-880]
Length = 140
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE--SLRLCLPLRSNPSKKMLVVYLGTEEI 96
M++DRGY V SEL L F+ TF D++ L + + +P+ ++LV + +
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 97 RTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------VEIFY 144
+ +R +Y + + ++ + I I Q +M + A K + + P K V I +
Sbjct: 61 GVKPLR-VYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQENELLVNITH 119
Query: 145 HILQPKHEVLSAGERDKLMKK 165
H+L PKHEVL+A E+ L+++
Sbjct: 120 HVLVPKHEVLTAEEKSTLLQR 140
>gi|357456709|ref|XP_003598635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355487683|gb|AES68886.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 124
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 2 GGSGGGGECITRSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRF 61
G+ EC+ R + ++E+ RYF R+T++ ML+DRGY V S+LT SL+EFR
Sbjct: 6 NGNETRSECLVR---ICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRS 62
Query: 62 TFGDKCDLESLRLCLPLRSNPSKKML 87
FG+ +L + + LRSNPS K+L
Sbjct: 63 RFGEFPKPHTLGVSVSLRSNPSIKVL 88
>gi|119589953|gb|EAW69547.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_a [Homo sapiens]
Length = 211
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKY 166
+ I H L P+H V++ E +L+ +Y
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARY 163
>gi|291240531|ref|XP_002740164.1| PREDICTED: DNA directed RNA polymerase II polypeptide E-like
[Saccoglossus kowalevskii]
Length = 210
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++L +F+ FGDK L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQEELDQTLDQFKSQFGDKPSEGRPRRNDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M + + +I + I+ Y Q + +E + +++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFIFFPEEPKIGIKTIKT-YCQKMQEENITRATIVVQAGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ + H L P+H V++ E+ +L+ +Y+++ Q+
Sbjct: 125 YILEQFLEAELLINLTEHELVPEHVVMTPEEKAELLARYRLKEHQL 170
>gi|170098869|ref|XP_001880653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644178|gb|EDR08428.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 208
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSN 81
E+ + + RT+ +++ DRG+ V + E+ L FR + + D L R+N
Sbjct: 6 ETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRTN 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK-- 139
+ ++ V + + + + +R L G IL ++++ I++ NM ARK ++ +
Sbjct: 66 STDQIFVFFSEEKSVGVKTMRKLLG-ILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYR 124
Query: 140 ----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L P+H+VLS E+ L++KY+++ Q+
Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRLKETQL 168
>gi|449462431|ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R F R+TV QML DRGY V + E+ + +F+ +G+ E + + R++ S
Sbjct: 7 EITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR---KEVLKFPFKVE 141
++ V + ++ + ++ Y + E + IL++Q N+ FAR E F +E
Sbjct: 67 QIYVFFPEEAKVGIKPLKT-YTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFHLE 125
Query: 142 IFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+F H+L P+H++L+ E+ L+++Y ++ Q+
Sbjct: 126 VFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQL 167
>gi|148910132|gb|ABR18148.1| unknown [Picea sitchensis]
Length = 194
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 12/155 (7%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
++ + F RRTVLQMLNDR Y V + E+ + +F FG+ E L + R++PS+
Sbjct: 6 QTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSE 65
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQS------NMNTFARKEVLKFPF 138
++ V + ++ ++I+ Y + + E + IL++Q ++ F E+L
Sbjct: 66 QIFVFFPEEAKVGVKSIKT-YVERMKSEGVFRAILVVQQEFSGKFHLEVFQEAELL---- 120
Query: 139 KVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H+L P+ ++L+ E+ L+++Y ++ Q+
Sbjct: 121 -VNIKEHVLVPEQQILTPEEKKTLLERYTLKETQL 154
>gi|116242767|sp|P19388.4|RPAB1_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II 23
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit E; AltName: Full=RPB5 homolog;
AltName: Full=XAP4
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens]
gi|311349818|gb|ADP92094.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349820|gb|ADP92095.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349822|gb|ADP92096.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349824|gb|ADP92097.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349826|gb|ADP92098.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349828|gb|ADP92099.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349830|gb|ADP92100.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349832|gb|ADP92101.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349834|gb|ADP92102.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349836|gb|ADP92103.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349838|gb|ADP92104.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349840|gb|ADP92105.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349842|gb|ADP92106.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349844|gb|ADP92107.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349846|gb|ADP92108.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349848|gb|ADP92109.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349850|gb|ADP92110.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349852|gb|ADP92111.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349854|gb|ADP92112.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349856|gb|ADP92113.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349858|gb|ADP92114.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349860|gb|ADP92115.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349862|gb|ADP92116.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349864|gb|ADP92117.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349866|gb|ADP92118.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349868|gb|ADP92119.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349870|gb|ADP92120.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349872|gb|ADP92121.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349874|gb|ADP92122.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349876|gb|ADP92123.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349878|gb|ADP92124.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349880|gb|ADP92125.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349882|gb|ADP92126.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349884|gb|ADP92127.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349886|gb|ADP92128.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349888|gb|ADP92129.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349890|gb|ADP92130.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349892|gb|ADP92131.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349894|gb|ADP92132.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349896|gb|ADP92133.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
Length = 210
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ GDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|449543190|gb|EMD34167.1| hypothetical protein CERSUDRAFT_141708, partial [Ceriporiopsis
subvermispora B]
Length = 208
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSN 81
+S + + RT+ +++ DRG+ V + E+ L FR + + D L SN
Sbjct: 6 DSAKLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYANNSGSVDRSQLNFFTNHTSN 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FK 139
P ++ V + + + + +R L G IL ++ + +++ NM ARK ++ +K
Sbjct: 66 PLVQIFVFFSDEKSVGVKTMRKLLG-ILEEKNIQQGVIVFPGNMTPSARKVIVAMASQYK 124
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L P+HEVL+A E+ +L++ Y+++ Q+
Sbjct: 125 LEEFSESDLLVNITHHTLVPRHEVLTAEEKKELLETYRLKETQL 168
>gi|298712690|emb|CBJ48715.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 18 MEGGG---SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRL 74
MEG G S E ++ + R+T ++ML RGY V ++ + F +G + + L L
Sbjct: 1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTL 60
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR---- 130
+ +P ++ V + E++ + IR Y + + +E + I++++ + FAR
Sbjct: 61 LVEKVDDPMDQIFVFFPDDEKVGVKPIRS-YSEKMLEEEVKRAIIVIKGGITPFARSAIQ 119
Query: 131 -----KEVLKFPFK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+EV FK ++I H L P+H+VLS+ ++ +L+K+YK++ Q+
Sbjct: 120 ELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQL 172
>gi|395332226|gb|EJF64605.1| RPB5 subunit of DNA-directed RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 211
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLP 77
G ES R + RT+ +++ DRG+ V + E+ L FR + + D L
Sbjct: 5 GEQEESARLWKVNRTIHELVKDRGFQVADDEINMDLATFRSHYASQSGTVDRSQLNFFTN 64
Query: 78 LRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
R NP ++ + + + + + +R L G IL ++ + I++ NM ARK ++
Sbjct: 65 HRDNPMLQIFIFFTDEKSVGVKTMRKLLG-ILEEKNIQQGIIVFPGNMTPSARKVIVAMA 123
Query: 138 --FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+K+E F +H L P+HE+L+ ++ +L++ Y+++ Q+
Sbjct: 124 SQYKLEEFSESDLLVNITHHTLVPRHELLTPEQKKELLETYRLKETQL 171
>gi|326934422|ref|XP_003213289.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Meleagris gallopavo]
Length = 209
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 27/170 (15%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVY----LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
+P+ +M V + +G + I+ +Y Q + +E + ++++Q M A++ ++
Sbjct: 66 DDPTDQMFVSFPEPKVGIKTIK------MYCQRMQEENITRALIVVQQGMTPSAKQSLVD 119
Query: 136 FPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
K + I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 120 MAPKYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 169
>gi|403223518|dbj|BAM41648.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 205
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 19/165 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLCLPLRSNP 82
E R F RRT +ML DRGY +P E + EF R+ DK + S L + +
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPGKERLETFAEFKARYELYDK--MRSKMLLVASQKTA 61
Query: 83 SKKMLVVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK-FP-- 137
S L+VY E +T + IR L ++ + + +H IL+ ++ + FA+ +++ +P
Sbjct: 62 SDNKLLVYFADETRKTGVKPIRELTERMEDHD-IHRAILVTRNVLTPFAKDAIMEAYPRN 120
Query: 138 ---------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH L+ E+ L++KYK++ Q+
Sbjct: 121 IIENFMETELLVNITRHELVPKHIPLTMDEKQNLLQKYKVKESQI 165
>gi|114674426|ref|XP_512960.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan troglodytes]
Length = 230
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 18/159 (11%)
Query: 32 SRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKKM 86
SR+T++Q+ +DRGY V EL ++L EF+ FGDK L + + +P+ +M
Sbjct: 33 SRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 92
Query: 87 LVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------- 139
V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 93 FVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFL 151
Query: 140 -----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 152 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 190
>gi|442755873|gb|JAA70096.1| Putative rna polymerase 25-kda subunit common to polymerases i ii
and iii [Ixodes ricinus]
Length = 210
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 18/161 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+Y+ + R+T++Q+ +DRGY V EL ++ +F+ FGDK L + +
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTQDQFKQQFGDKPSERRPARSDLIVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------ 133
+P+ +M V + +I + I+ Y Q + +E + I+++Q M A++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKT-YCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPK 124
Query: 134 ------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKI 168
L+ + I H L P+H VL+ E+ +L+ +YK+
Sbjct: 125 YILEHFLESELLINITEHELVPEHVVLTPEEKAELLARYKL 165
>gi|392594893|gb|EIW84217.1| RPB5 subunit of DNA-directed RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 207
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
E+ + + RTV +++ DRGY V + E+ F+ + G D L + N
Sbjct: 5 ETAKLWKVNRTVHELVKDRGYQVSDDEIHMDFATFKSHYANNGGSVDRNQLNFFTNSQEN 64
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FK 139
P++++ + + + + +R L IL ++++ I+I M ARK ++ ++
Sbjct: 65 PTEQIFIYFSDERSVGIKTMRKLIA-ILEEKSIQRAIIIFPGAMTGAARKVIVAMASQYR 123
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +HIL PKHEVL+ ++ L++KY+++ Q+
Sbjct: 124 IEEFSESDLLVNITHHILVPKHEVLTPEQKKALLEKYRLKDTQL 167
>gi|198457753|ref|XP_002138441.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
gi|198136092|gb|EDY68999.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 90/166 (54%), Gaps = 28/166 (16%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK----CDLES-LRLCLPLR 79
E Y+ + R+TVLQM +DRGY V EL ++L F+ FGD+ C + + L +
Sbjct: 6 ELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVAHN 65
Query: 80 SNPSKKMLVVY-----LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR---- 130
+P+ +M V + +G ++I+ +R + +E+++ I+++Q+++ AR
Sbjct: 66 DDPTDQMFVFFPQEPKVGIKDIKRYCLR------MQEESIYRAIIVVQNSITPSARQALV 119
Query: 131 ----KEVLKFPFKVEIFYHILQ----PKHEVLSAGERDKLMKKYKI 168
K VL+ + E+ ++I + P+H V++ E+ +L+ +YK+
Sbjct: 120 EMAPKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKL 165
>gi|195150967|ref|XP_002016421.1| GL10501 [Drosophila persimilis]
gi|194110268|gb|EDW32311.1| GL10501 [Drosophila persimilis]
Length = 210
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 90/166 (54%), Gaps = 28/166 (16%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK----CDLES-LRLCLPLR 79
E Y+ + R+TVLQM +DRGY V EL ++L F+ FGD+ C + + L +
Sbjct: 6 ELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVAHN 65
Query: 80 SNPSKKMLVVY-----LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFAR---- 130
+P+ +M V + +G ++I+ +R + +E+++ I+++Q+++ AR
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKDIKRYCLR------MQEESIYRAIIVVQNSITPSARQALV 119
Query: 131 ----KEVLKFPFKVEIFYHILQ----PKHEVLSAGERDKLMKKYKI 168
K VL+ + E+ ++I + P+H V++ E+ +L+ +YK+
Sbjct: 120 EMAPKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKL 165
>gi|224001668|ref|XP_002290506.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
gi|220973928|gb|EED92258.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
Length = 226
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFT--FGDKCDLESLRLCLPLRSNP 82
E+ R F +TV ML+ RGY V S R +T F FT FG+ E L + + +
Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMV--SREMREMTPFDFTQRFGEYPSREGLTILVEKADDE 84
Query: 83 SKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP----- 137
+ ++ V + E++ + I+ L + + E + IL+L+ ++ FA++ VL+
Sbjct: 85 TNQLFVFFPEDEKVGVKPIKILTDR-MKDENVSNAILVLRGDITPFAKQAVLEMSDSFRL 143
Query: 138 --FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FK V+I H L P+H VLS E+ +L+K+Y++ Q+
Sbjct: 144 EHFKEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQL 186
>gi|449502080|ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 17/164 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R F R+TV QML DRGY V + E+ + +F+ +G+ E + + R++ S
Sbjct: 7 EITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSKRNDSSD 66
Query: 85 KMLVVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFAR---KEVLKFPFK 139
++ + + EE + I+ L Y + E + IL++Q N+ FAR E F
Sbjct: 67 QVYICFFP-EEAKV-GIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSKSFH 124
Query: 140 VEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E+F H+L P+H++L+ E+ L+++Y ++ Q+
Sbjct: 125 LEVFQEAELLVNIKDHVLVPEHQLLNNEEKKTLLERYTVKETQL 168
>gi|429329987|gb|AFZ81746.1| DNA-directed RNA polymerase, putative [Babesia equi]
Length = 205
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R F RRT +ML DRGY +P+ E + EF+ + S L + + S+
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYESYDRTRSKMLLVASQKTASE 63
Query: 85 KMLVVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK--- 139
++V+ E +T + IR L ++ + + +H IL+ Q+ + +FA+ +++ +
Sbjct: 64 NKVLVFFADETKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTSFAKDAIMEASPRNII 122
Query: 140 ---------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH L+ E+ L+++YK++ Q+
Sbjct: 123 ENFMETELLVNITRHELVPKHVPLTMEEKQNLLQRYKVKENQI 165
>gi|162606200|ref|XP_001713615.1| RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
gi|13794535|gb|AAK39910.1|AF165818_118 RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
Length = 214
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 22/171 (12%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSE----LTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK 85
F RRTVLQM+ DRGY V +S+ ++RS E + +SL + P NP +
Sbjct: 11 FKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPRWDNPENR 70
Query: 86 MLVVYLGTEE----IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF----- 136
+L+V++ E+ I ++IR L+ + + E +++IL + A++ V
Sbjct: 71 ILIVFVEGEKDKMNIGVKSIR-LFCERIKNEGFSRVLMILNGKLTPHAKQAVSSINSNND 129
Query: 137 --------PFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
V I +H+L PKHE+LS E L+++Y I+ + ++K
Sbjct: 130 LIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKILKN 180
>gi|340377807|ref|XP_003387420.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 210
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 26 SYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRS 80
+YR + R+TV+QM +DR Y V EL ++L +F+ FG++ + L + +
Sbjct: 7 TYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHND 66
Query: 81 NPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK- 139
+P+ +M V + ++ + I+ G+ + +E + I+++Q M A++ ++ K
Sbjct: 67 DPTDQMFVFFPEDPKVGIKTIKQYCGR-MQEENISRAIIVVQQGMTPSAKQALVDMAPKY 125
Query: 140 -----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E+ +L+ +YK++ Q+
Sbjct: 126 ILEQFMEAELMINITEHELVPEHIVMTTEEKRELLARYKLKEHQL 170
>gi|389742519|gb|EIM83705.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRL 74
M E+ + RT+ +++ DRGY V + E+ LT F+ + G D L
Sbjct: 1 MSSADDSEAATLWKVNRTIHELVKDRGYQVADDEIHMDLTTFKSHYANSGGSVDRNQLNF 60
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
LR N + + V + + + + +R L QI+ ++ + I+I M ARK ++
Sbjct: 61 FTNLRVNVEEHIFVFFSDEKSVGVKTMRKLL-QIMTEKNIRRGIIIFPGIMTPAARKVIV 119
Query: 135 KFP-FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
FKVE F +H L P+H+VL+ E+ L+++Y+++ Q+
Sbjct: 120 SMAEFKVEEFSEADLLVNITHHKLVPRHDVLTTEEKKMLLERYRLKETQL 169
>gi|297830274|ref|XP_002883019.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
gi|297328859|gb|EFH59278.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVV 89
FL +RT++QML DRGY++ +SE+T +L EF +G+ ++L + L + N L +
Sbjct: 12 FLVQRTLMQMLKDRGYSIEDSEITMTLGEFIEKYGENMKRKAL-VTLKAKKNDDNDKLYI 70
Query: 90 YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK----FP-FKVEIF- 143
+ + A Y L E + IL+ Q ++ F+R L +P F +E+F
Sbjct: 71 FFPNKAKVGVADMKKYINRLKSENVFRAILVKQ-DIKEFSRHAQLSIGAAYPKFNIEVFQ 129
Query: 144 ---------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+H+ P+H+ L+ E+ + +++Y ++ Q+
Sbjct: 130 EKELIVNVNHHVFVPEHQALTTEEKQQFLERYTVKENQL 168
>gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus]
Length = 162
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKK 165
+ I H L P+H V++ E +L+ +
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
>gi|148699662|gb|EDL31609.1| mCG13422, isoform CRA_b [Mus musculus]
Length = 165
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 79/158 (50%), Gaps = 18/158 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 9 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 68
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 69 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 127
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKK 165
+ I H L P+H V++ E +L+ +
Sbjct: 128 YVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 165
>gi|296822412|ref|XP_002850281.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
gi|238837835|gb|EEQ27497.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
Length = 236
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + + RTV ++L DRGY V E+ SL EFR + D R + + + PS+
Sbjct: 16 EMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPD-RNKMRISARPSQ 74
Query: 85 KMLVVYLG-----------------------TEEIRTQAIRGLYGQILNKEALHGLILIL 121
M+ Y T+ + T+ IR + Q ++++ H I I
Sbjct: 75 AMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRA-FNQFIDQQNYHAGIFIT 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
QS ++ A + + P + V I +H L PKH +LSA E+ KL+++Y+++
Sbjct: 134 QSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|449019061|dbj|BAM82463.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 211
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAV--PNSELTRSLTEFRFTFGDKCDL-ESLRLCLPLRSN 81
E+ R RRT+L+ML DRGY V ++L L EF F ESL + R++
Sbjct: 9 ETRRLHRIRRTILEMLRDRGYLVLPTKTDLELPLEEFAHKFDAAGRARESLTMLRQHRND 68
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFK 139
S ++ V + E++ + IR Y L E + I+++Q+ + A++ V L+ F
Sbjct: 69 RSNQIYVFFPKEEKVGVKPIRE-YCLRLETENVLRAIIVVQTGLTPIAKQAVAELQPRFH 127
Query: 140 VEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E+F H L PKHEVL+A ++ L+K+Y+++ Q+
Sbjct: 128 LELFQEAELLVNITRHQLVPKHEVLTAEQKKTLLKRYQLKDTQL 171
>gi|344243380|gb|EGV99483.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 218
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 25 ESYRYFLSRRTV--------LQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LES 71
E+YR + R+T+ LQ+ +DRGY V EL ++L EF+ FGDK
Sbjct: 6 ETYRLWKIRKTIMQASDSLSLQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTD 65
Query: 72 LRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK 131
L + + +P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++
Sbjct: 66 LTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQ 124
Query: 132 EVLKFPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
++ K + I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 SLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQL 178
>gi|326480400|gb|EGE04410.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 276
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC------ 75
E R + + RTV ++L DRGY V E+ SL++F+ + D D +R+
Sbjct: 16 EMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARPSQA 75
Query: 76 -----LPLRSNPSKKMLVVYLGT---------EEIRTQAIRGLYGQILNKEALHGLILIL 121
PL PSK V GT + + T+ IR + Q ++++ H I I
Sbjct: 76 MMERYTPL-PTPSKPNTVPECGTIHVEFCSETQSVGTKHIRA-FNQFIDQQNYHAGIFIT 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
QS ++ A + + P + V I +H L PKH +LSA E+ KL+++Y+++
Sbjct: 134 QSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|84000159|ref|NP_001033182.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
taurus]
gi|109893821|sp|Q2T9T3.1|RPAB1_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|83405854|gb|AAI11281.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Bos
taurus]
Length = 210
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V L ++L EF+ FG K L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQL 170
>gi|326475256|gb|EGD99265.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
Length = 228
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC------ 75
E R + + RTV ++L DRGY V E+ SL++F+ + D D +R+
Sbjct: 16 EMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARPSQA 75
Query: 76 -----LPLRSNPSKKMLVVYLGT---------EEIRTQAIRGLYGQILNKEALHGLILIL 121
PL PSK V GT + + T+ IR + Q ++++ H I I
Sbjct: 76 MMERYTPL-PTPSKPNTVPECGTIHVEFCSETQSVGTKHIRA-FNQFIDQQNYHAGIFIT 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
QS ++ A + + P + V I +H L PKH +LSA E+ KL+++Y+++
Sbjct: 134 QSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|302503318|ref|XP_003013619.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|302665750|ref|XP_003024482.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|327294261|ref|XP_003231826.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|291177184|gb|EFE32979.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|291188539|gb|EFE43871.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|326465771|gb|EGD91224.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 236
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLCL----- 76
E R + + RTV ++L DRGY V E+ SL++F+ + D D +R+
Sbjct: 16 EMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARPSQA 75
Query: 77 ------PLRSNPSKKMLVVYLGT---------EEIRTQAIRGLYGQILNKEALHGLILIL 121
PL PSK V GT + + T+ IR + Q ++++ H I I
Sbjct: 76 MMERYTPL-PTPSKPNTVPECGTIHVEFCSETQSVGTKHIRA-FNQFIDQQNYHAGIFIT 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
QS ++ A + + P + V I +H L PKH +LSA E+ KL+++Y+++
Sbjct: 134 QSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|328770744|gb|EGF80785.1| hypothetical protein BATDEDRAFT_88106 [Batrachochytrium
dendrobatidis JAM81]
Length = 207
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTF--GDKCDLESLRLCLPLRSNPSKKMLVVYL 91
RT+ +M++ RGY V +EL SL +FR+T+ G D + L + S+ + ++LV +
Sbjct: 15 RTIHEMVSHRGYLVSKAELEMSLDDFRYTYTKGGIIDRQGLTFLVQHSSSENDQLLVFFT 74
Query: 92 GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------ 139
+ + + I+ + +++++ + G ILI + ++ A K V + K
Sbjct: 75 DDDSVGIKPIKKICERMISQSIMKG-ILIYKKSLTPSANKVVQEMAPKYQLELFQESELL 133
Query: 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L P HEVL+ E+ L+ +Y+++ Q+
Sbjct: 134 VNITQHTLVPVHEVLTVDEKKTLLARYRLKETQL 167
>gi|313226453|emb|CBY21598.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 86/164 (52%), Gaps = 18/164 (10%)
Query: 27 YRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDL-----ESLRLCLPLRSN 81
++ + R+T++ M +DR Y V EL ++L +F+ FG + + L + + +
Sbjct: 8 FKLWRIRKTIMAMCHDRKYLVAQRELDQTLEQFKAEFGSQPSQGQPSRKDLTIIVCHSDD 67
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFK 139
P+ +M V + ++ + ++ +Y Q + +E + ++++Q +M A++ + + +
Sbjct: 68 PTDQMFVFFPEDPKVTIKQVK-IYCQRMQEENITRALIVIQQSMTPSAKQALDDMAPKYT 126
Query: 140 VEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E FY H L P H VL+ E+++L+K+YK++ Q+
Sbjct: 127 LESFYEQELMINLTEHELVPTHAVLTDDEKNELLKRYKLKESQL 170
>gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis TU502]
gi|54659611|gb|EAL38180.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis]
gi|323509171|dbj|BAJ77478.1| cgd2_980 [Cryptosporidium parvum]
gi|323509997|dbj|BAJ77891.1| cgd2_980 [Cryptosporidium parvum]
Length = 205
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R+F +RRT+ +ML DRGY V + + + F+ F L S L + K +
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66
Query: 88 VVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------ 139
+ Y E +T + IR + + +++ A+ ILI Q+ + A+ +L K
Sbjct: 67 ICYFADESKKTGVKPIRDIVEK-MDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125
Query: 140 ------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH +LS E+ +L+ +YKI+ Q+
Sbjct: 126 LENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQL 165
>gi|357500693|ref|XP_003620635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495650|gb|AES76853.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 239
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+T+LQML DR Y V ++LT S +F F FG+ E L + R+N S+K+ V +
Sbjct: 15 RKTILQMLFDRNYLVDETQLTMSREDFIFKFGEHMKREQLEINTTHRNNLSEKICVFFFD 74
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV 133
++ +RG+ ++L KE + I++ Q+ ++ ARK V
Sbjct: 75 DAKLGVNIVRGIINRML-KENVDNGIMVCQNKLSPAARKAV 114
>gi|66358302|ref|XP_626329.1| DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa II]
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa
II]
Length = 214
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 15/160 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R+F +RRT+ +ML DRGY V + + + F+ F L S L + K +
Sbjct: 16 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 75
Query: 88 VVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------ 139
+ Y E +T + IR + + +++ A+ ILI Q+ + A+ +L K
Sbjct: 76 ICYFADESKKTGVKPIRDIVEK-MDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESF 134
Query: 140 ------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH +LS E+ +L+ +YKI+ Q+
Sbjct: 135 LENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQL 174
>gi|440634485|gb|ELR04404.1| hypothetical protein GMDG_01480 [Geomyces destructans 20631-21]
Length = 236
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 34/182 (18%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFT-----------FGDKCDLES 71
E R + + RTV QM+NDRGY + EL+ SL EF RFT F + +E
Sbjct: 16 EVARLWRAWRTVHQMVNDRGYELNEDELSISLAEFKHRFTNDGVPDRKKMIFTARPSVEM 75
Query: 72 L-RLCLPLRS---NPSKK----MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQS 123
+ R P + NP K + + +L + + +R + Q+L++ H IL+
Sbjct: 76 VARYSTPATAANPNPPKADVGTIYIEFLADTNVGIKQMRS-FAQVLSQGNFHTGILVTHV 134
Query: 124 NMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGK 171
++ A K V L+ V I +H L PKH +LS ER KL+++Y+++
Sbjct: 135 HITPAAMKIVPAVASETRIECFLEQDLLVNITHHELVPKHVLLSKEERSKLLQRYRLKDT 194
Query: 172 QV 173
Q+
Sbjct: 195 QL 196
>gi|402589264|gb|EJW83196.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 191
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDK-----CDLESLRLCLPLRSNPSKKMLVVYLGT 93
M +DRGY V EL ++L F+ TFGDK L + + +P+ +M V +
Sbjct: 1 MCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHNDDPTDQMFVFFPED 60
Query: 94 EEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------------LKFPFKVE 141
+I + I+ + Q + ++A+ I+++Q+ M A++ + L+ V
Sbjct: 61 SKIGIKTIKAICQQ-MQEQAITRAIIVVQTGMTPSAKQAIADMAPKYTLEQFLEAELMVN 119
Query: 142 IFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
I H L P+H V++ E+++L+ +YK++ Q+
Sbjct: 120 ITEHELVPEHVVMTNEEKNELLGRYKLKDTQL 151
>gi|119186603|ref|XP_001243908.1| hypothetical protein CIMG_03349 [Coccidioides immitis RS]
gi|303317654|ref|XP_003068829.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108510|gb|EER26684.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038831|gb|EFW20766.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
gi|392870629|gb|EAS32444.2| DNA-directed RNA polymerase II polypeptide [Coccidioides immitis
RS]
Length = 236
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 34/182 (18%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLR-------- 73
E R + + RTV +ML DRGY V E+ L EFR + D D +R
Sbjct: 16 EMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARPSQT 75
Query: 74 -------LCLPLRSNPSKKMLVVYL----GTEEIRTQAIRGLYGQILNKEALHGLILILQ 122
L P + NP + +Y+ + + T+ +R + ++++ H I I Q
Sbjct: 76 MIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRA-FNHFVDEQNYHTGIFITQ 134
Query: 123 SNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGK 171
S ++ A + + P + V I +H L PKH +LSA E+ +L+++Y+++
Sbjct: 135 SPISPSAIRLLTGIPGRFCEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRLKES 194
Query: 172 QV 173
Q+
Sbjct: 195 QL 196
>gi|407928431|gb|EKG21288.1| RNA polymerase subunit H/Rpb5 [Macrophomina phaseolina MS6]
Length = 227
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 31/178 (17%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E+ R + + RT +M+ DRGY + SE +L EFR FGD R L +NPS
Sbjct: 12 EASRLWRAWRTAHEMIADRGYIMSESEYKITLDEFRAKFGDSSGYVD-RKQLAFSANPSD 70
Query: 85 KM------------------LVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMN 126
+M V + G + I + +R +G LN+ I I +
Sbjct: 71 EMKQKHFNPRKPKESEVGNIWVEFNGDQNIGVKQLRN-FGHTLNEHNFSSGIFITAVPVT 129
Query: 127 TFARKEVLKF-PFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
A+K + P +EIF H L PKH +LSA E+ L+ +Y+++ Q+
Sbjct: 130 GAAQKIIPSLHPLIMEIFMEQDLLVNITQHELVPKHVLLSAEEKAALLARYRLKESQL 187
>gi|313765818|gb|ADR80315.1| RNA polymerase B5-subunit [Rutilus rutilus]
Length = 129
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EFR FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
+P+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++ ++
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQSLV 119
>gi|315056263|ref|XP_003177506.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311339352|gb|EFQ98554.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 236
Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLCL----- 76
E R + + RTV ++L DRGY V E+ SL +F+ + D D +R+
Sbjct: 16 EMTRLWRTWRTVFELLLDRGYEVTEEEVKISLGDFKQRYSDALGFPDRNKMRISARPSQA 75
Query: 77 ------PLRSNPSKKMLVVYLGT---------EEIRTQAIRGLYGQILNKEALHGLILIL 121
PL PSK V GT + + T+ IR + Q ++++ H I I
Sbjct: 76 MMERYTPL-PTPSKPNTVPECGTIHVEFCSETQSVGTKHIRA-FNQFIDQQNYHAGIFIT 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
QS ++ A + + P + V I +H L PKH +LSA E+ KL+++Y+++
Sbjct: 134 QSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|209878710|ref|XP_002140796.1| DNA-directed RNA polymerase 2 [Cryptosporidium muris RN66]
gi|209556402|gb|EEA06447.1| DNA-directed RNA polymerase 2, putative [Cryptosporidium muris
RN66]
Length = 205
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R+F +RRT+ +ML DRGY V + + F+ F L S L + K +
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKRI 66
Query: 88 VVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------ 139
+ Y E +T + IR + + +++ + ILI Q+ + A+ +L K
Sbjct: 67 ICYFADESKKTGVKPIRDIVEK-MDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125
Query: 140 ------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L PKH +LS E+ +L+++YK++ Q+
Sbjct: 126 LENELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQL 165
>gi|307108804|gb|EFN57043.1| hypothetical protein CHLNCDRAFT_48698 [Chlorella variabilis]
Length = 203
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 80/158 (50%), Gaps = 18/158 (11%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLR-----LCLPLRSNPSKKML 87
RRT L+ML DRGY + ++ S +F F + D E++R + +P+ +
Sbjct: 7 RRTCLEMLRDRGYQIDKEDVEMSGRKFVEKFATEPDPENVRRDAITILASKADDPTHQAF 66
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKVEIFY- 144
V + ++ +AI+ + + + E + IL+LQ + FA++ + + F +E+F
Sbjct: 67 VFFFEDPKLGVKAIKAVAVR-MRDERVPRSILVLQDKLTPFAKQCIQEMSAKFAIEVFAE 125
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H + P+H+VLS ++ L+++YK++ Q+
Sbjct: 126 GELRVNITRHSMVPQHQVLSRLDKAALLERYKVKDTQL 163
>gi|339250892|ref|XP_003374431.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
gi|316969258|gb|EFV53386.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
Length = 211
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRLCLPLR 79
E +R + R QM DRG+ V ++EL ++ +F +GD K L +
Sbjct: 7 EIFRLWKIRHNAFQMCRDRGFLVTSNELDQNFEDFVRQYGDRPSEGKPARSDLSFLVSHE 66
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------ 133
+ ++ + V + +++ + I+ + + L E + I+I+Q M AR V
Sbjct: 67 EDAAENLFVYFADEKKVGIKTIKNVCLR-LQSENMSRAIMIVQEPMTAIARHSVADLSPK 125
Query: 134 ------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H ++S+ E+D+L+ +YKI+ Q+
Sbjct: 126 YRLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQL 171
>gi|339233930|ref|XP_003382082.1| retinol dehydrogenase 12 [Trichinella spiralis]
gi|316979012|gb|EFV61880.1| retinol dehydrogenase 12 [Trichinella spiralis]
Length = 508
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 18/166 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-----KCDLESLRLCLPLR 79
E +R + R+ QM DRG+ V + EL ++ +F +GD K L +
Sbjct: 7 EIFRLWKIRQNAFQMCRDRGFLVTSYELDQNFEDFVRQYGDRPSEGKPARSDLSFLVSHE 66
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------ 133
+ ++ + V + ++ + I+ + + L E + I+I+Q M AR V
Sbjct: 67 EDAAENLFVYFADERKVGIKTIKNVCLR-LQSENMSRAIMIVQEPMTAIARHSVADLSPK 125
Query: 134 ------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
L+ V I H L P+H ++S+ E+D+L+ +YKI+ Q+
Sbjct: 126 YKLEQFLEAELMVNIIRHELVPRHVIMSSKEKDELLDRYKIKEHQL 171
>gi|388583908|gb|EIM24209.1| RPB5 subunit of DNA-directed RNA polymerase [Wallemia sebi CBS
633.66]
Length = 207
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK--CDLESLRLCLPLRSNPSKKMLVVYL 91
RT +M+ DRG+AV E+ EF+ T+ D SL L NP ++ V +
Sbjct: 15 RTAHEMVQDRGFAVSQQEIEIPYAEFKETYAGNGIIDRASLHFFASLEDNPDDQIFVFFA 74
Query: 92 GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP------------FK 139
I + +R + +L + + ILI + A K + + +
Sbjct: 75 DEPSIGIKTMRK-FLTVLEERKIGRGILIYPEKLTPAANKVIAEMAADYKLQAFTESELQ 133
Query: 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L P+HEVL+A E+ L++KY+++ Q+
Sbjct: 134 VNITHHQLVPQHEVLTAEEKKLLLQKYRLKPTQL 167
>gi|154276568|ref|XP_001539129.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414202|gb|EDN09567.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 236
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 36/188 (19%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR 79
E R + + RTV +ML DRGY V E+ SL EFR + D R + +
Sbjct: 11 ADADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPD-RNKMKIS 69
Query: 80 SNPSKKMLVVY--------------LGT---------EEIRTQAIRGLYGQILNKEALHG 116
+ PS+ M+ Y GT + + T+ IR + ++++ H
Sbjct: 70 ARPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRA-FNHFIDEQNYHT 128
Query: 117 LILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKK 165
I + Q+ ++ A + + P + V I +H L PKH +LSA E+ +L+++
Sbjct: 129 GIFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQR 188
Query: 166 YKIEGKQV 173
Y+++ Q+
Sbjct: 189 YRLKESQL 196
>gi|297738790|emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRT 98
ML DRGY V + E+ + +F FG+ E L + R++ S ++ V + +++
Sbjct: 1 MLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQIYVFFPEEQKVGV 60
Query: 99 QAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFKVEIFY----------HI 146
+ ++ Y + E + IL++Q N+ FAR + + F +E+F H+
Sbjct: 61 KTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHV 119
Query: 147 LQPKHEVLSAGERDKLMKKYKIEGKQV 173
L P+H+VL++ E+ L+++Y ++ Q+
Sbjct: 120 LVPEHQVLTSEEKKTLLERYTVKETQL 146
>gi|225711614|gb|ACO11653.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
rogercresseyi]
Length = 210
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+ + +DRGY V EL ++L +F+ FGDK + L + +
Sbjct: 6 ENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + IR Y + + +E + I+++QS M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPDDPKIGIKHIRT-YCKRMQEENITRAIILVQSGMTPSAKQSLMDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSA 156
+ + H L P+H V++
Sbjct: 125 YILEQFLESELLINLTEHDLVPEHVVMTP 153
>gi|440494631|gb|ELQ76996.1| RNA polymerase, 25-kDa subunit (common to polymerases I, II and
III) [Trachipleistophora hominis]
Length = 197
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 18/156 (11%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC--DLESLRLCLPLRSNPSKKML 87
+L R+TVL+ML+DRGY+V ++ +F + + C D +LR+ + K+ML
Sbjct: 8 YLVRKTVLEMLSDRGYSVKEYQVN-DYDDFVNKYPN-CVKDTTNLRIIV----QKDKEML 61
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF---- 143
V+ EE + + + + K+ + LIL+L+ ++ A K L+ P + IF
Sbjct: 62 FVFFSDEEKMSLKSVKILVENMEKQNIKNLILVLREGISPAANKFALECPMNITIFKEKE 121
Query: 144 ------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H L KH ++S E+++LM + KI+ +Q+
Sbjct: 122 LLFNVTKHSLVFKHRIISVEEKERLMDEKKIKEEQM 157
>gi|397485347|ref|XP_003813812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan paniscus]
Length = 256
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 37 LQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKKMLVVYL 91
LQ+ +DRGY V EL ++L EF+ FGDK L + + +P+ +M V +
Sbjct: 64 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 123
Query: 92 GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------ 139
++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 124 EEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELL 182
Query: 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 183 INITEHELVPEHVVMTKEEVTELLARYKLRENQL 216
>gi|389584405|dbj|GAB67137.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 205
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R++ R+T +ML DRGY + E + F+ F + L S + N + +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDANNKI 66
Query: 88 VVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFARKEV------------ 133
+VY +EI+ ++ L + ++++++ IL+ Q+ + FAR +
Sbjct: 67 IVYFA-DEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENF 125
Query: 134 LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIE 169
L V I H L PKH L++ E+ L+++YKI+
Sbjct: 126 LDTELLVNITKHELVPKHIPLTSDEKRNLLQRYKIK 161
>gi|414586665|tpg|DAA37236.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 203
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 10/155 (6%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F RRTV +ML DRGY V + ++ +F +G+ + L + PS ++
Sbjct: 10 RLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATKLNGPSDQIY 69
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK-------- 139
V + + + IR ++ N+ G IL++Q ++ FAR V + K
Sbjct: 70 VFFPNEAKPGVKTIRNYVEKMKNENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEEAEL 128
Query: 140 -VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H+L P+H +L+ ++ L+++Y ++ Q+
Sbjct: 129 LVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQL 163
>gi|255546411|ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 225
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 30/176 (17%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN-----P 82
R F RRTV+QML DR Y V +SE+ + +F +GD E L + R P
Sbjct: 10 RLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSKRDGSDSFYP 69
Query: 83 SKKMLV-----------VYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFA 129
+K + + +Y+ E + ++ + Y + E + IL++Q ++ FA
Sbjct: 70 TKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQSLTPFA 129
Query: 130 RKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
R + + F +E+F H+L P+H+VL+ E+ L+++Y ++ Q+
Sbjct: 130 RTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTVKETQL 185
>gi|224087898|ref|XP_002198655.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Taeniopygia guttata]
Length = 119
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK 131
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRALIVVQQGMTPSAKQ 116
>gi|291000790|ref|XP_002682962.1| predicted protein [Naegleria gruberi]
gi|284096590|gb|EFC50218.1| predicted protein [Naegleria gruberi]
Length = 229
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 34/188 (18%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD----------- 68
+ ESYR + R+TVLQML+ RGY V SE L EF FG +
Sbjct: 2 NNANSESYRLWRIRKTVLQMLDARGYMVLESEKNMDLAEFESKFGTGPNNVSQSGQARGY 61
Query: 69 ----LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILI---- 120
+ L + + +PS+ + V + T+ I + I+ + ++ + ++++
Sbjct: 62 TTIGRDRLSIVTSMADDPSEMIFVFFPATKAIGMKQIKDYHSKMKDNNVKRAILVLRPAD 121
Query: 121 --LQSNMNTFARKEVLKF--------PFK-----VEIFYHILQPKHEVLSAGERDKLMKK 165
Q ++++ A++ + FK V I H+L P+H L+ + ++L+++
Sbjct: 122 SFQQKDLSSQAKRAIEALQAIGYILETFKETELLVNITEHVLVPQHVPLNKAQHEELLQR 181
Query: 166 YKIEGKQV 173
YK++ Q+
Sbjct: 182 YKLKETQL 189
>gi|351714028|gb|EHB16947.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Heterocephalus glaber]
Length = 292
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGHPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
>gi|212722800|ref|NP_001132429.1| hypothetical protein [Zea mays]
gi|194694360|gb|ACF81264.1| unknown [Zea mays]
gi|414586666|tpg|DAA37237.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 206
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F RRTV +ML DRGY V + ++ +F +G+ + L + PS ++
Sbjct: 10 RLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATKLNGPSDQIY 69
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY- 144
V + + + IR ++ N+ G IL++Q ++ FAR V + + +E+F
Sbjct: 70 VFFPNEAKPGVKTIRNYVEKMKNENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEVFQE 128
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L P+H +L+ ++ L+++Y ++ Q+
Sbjct: 129 AELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQL 166
>gi|326499964|dbj|BAJ90817.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 132
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 66/119 (55%), Gaps = 15/119 (12%)
Query: 73 RLCLPLRSN-PSKK--MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFA 129
R CLP+ S P +K + +++ E +R I+ ++ QI E L LILIL + A
Sbjct: 12 RNCLPMISFFPGEKDGVKILFCPPEPVRIANIQEIHDQI-EGENLSRLILILLGKIMPRA 70
Query: 130 RKEVL-KFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILV 177
++ V KF FKV+IF H L+PKHEVL+A E+ KL+K Y +E QV + V
Sbjct: 71 KESVKEKFTFKVDIFQVNELLVNISKHDLKPKHEVLTAEEKAKLLKLYNVEDSQVRLSV 129
>gi|307106700|gb|EFN54945.1| hypothetical protein CHLNCDRAFT_134695 [Chlorella variabilis]
Length = 190
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVV 89
F R+T L+ML DRGY + E + +F +G E L +P++++ V
Sbjct: 2 FRIRKTCLEMLADRGYLITEEERDATRDQFTDKYGPDIRREDLT------DDPTEQIFVF 55
Query: 90 YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK---------- 139
+ ++ + I+ L ++ N E + +++ Q+NM FA++ + + K
Sbjct: 56 FPEEAKVGVKTIKLLAERMRN-EGVQRAVMVTQANMTPFAKQCLSEMAPKYYIELFQEAE 114
Query: 140 --VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I H L P+H +L+ E+ L+ +YK++ Q+
Sbjct: 115 LLVNITKHTLVPQHRILTREEKQTLLDRYKVKDTQL 150
>gi|149034610|gb|EDL89347.1| rCG29511, isoform CRA_c [Rattus norvegicus]
Length = 146
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
>gi|261200923|ref|XP_002626862.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593934|gb|EEQ76515.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607191|gb|EEQ84178.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327351148|gb|EGE80005.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 236
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 34/187 (18%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC- 75
E R + + RTV +ML DRGY V E+ L EFR + D D +++
Sbjct: 11 ADADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISA 70
Query: 76 ------------LP--LRSNPSKKMLVVYL----GTEEIRTQAIRGLYGQILNKEALHGL 117
LP L+ NP + +Y+ + T+ +R + ++++ H
Sbjct: 71 RPSQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRA-FNHFIDEQNYHTG 129
Query: 118 ILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKY 166
I I Q+ ++ A + + P + V I +H L PKH +LSA E+ +L+++Y
Sbjct: 130 IFISQTPISPSAIRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 167 KIEGKQV 173
+++ Q+
Sbjct: 190 RLKESQL 196
>gi|432101146|gb|ELK29430.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Myotis
davidii]
Length = 203
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
+P+ +M V + ++ + I+ +Y Q + +E + ++++Q M A++ ++
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
>gi|225560287|gb|EEH08569.1| RNA polymerase subunit [Ajellomyces capsulatus G186AR]
gi|240279038|gb|EER42544.1| RNA polymerase subunit [Ajellomyces capsulatus H143]
gi|325090297|gb|EGC43607.1| RNA polymerase subunit [Ajellomyces capsulatus H88]
Length = 236
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 34/187 (18%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC- 75
E R + + RTV +ML DRGY V E+ L EFR + D D +++
Sbjct: 11 ADADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISA 70
Query: 76 ------------LPLRS--NPSKKMLVVYL----GTEEIRTQAIRGLYGQILNKEALHGL 117
LP S NP + +Y+ + + T+ IR + ++++ H
Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRA-FNHFIDEQNYHTG 129
Query: 118 ILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKY 166
I + Q+ ++ A + + P + V I +H L PKH +LSA E+ +L+++Y
Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 167 KIEGKQV 173
+++ Q+
Sbjct: 190 RLKESQL 196
>gi|221057466|ref|XP_002261241.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|194247246|emb|CAQ40646.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 205
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R++ R+T +ML DRGY + E + F+ F + L S + N +
Sbjct: 7 RFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDESNKI 66
Query: 88 VVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEV------------ 133
+VY E +T + +R L + ++++++ IL+ Q+ + FAR +
Sbjct: 67 IVYFADETKKTGVKPLRELTEK-MDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENF 125
Query: 134 LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKI 168
L V I H L P+H L++ E+ L+++YKI
Sbjct: 126 LDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKI 160
>gi|156101473|ref|XP_001616430.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148805304|gb|EDL46703.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Plasmodium vivax]
Length = 205
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R++ R+T +ML DRGY + E + F+ F + L S + N + +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDANNKI 66
Query: 88 VVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFARKEV------------ 133
+VY +EI+ ++ L + ++++++ IL+ Q+ + FAR +
Sbjct: 67 IVYFA-DEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENF 125
Query: 134 LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIE 169
L V I H L P+H L++ E+ L+++YKI+
Sbjct: 126 LDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIK 161
>gi|281341350|gb|EFB16934.1| hypothetical protein PANDA_012732 [Ailuropoda melanoleuca]
Length = 193
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 37 LQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKKMLVVYL 91
LQ+ +DRGY V EL ++L EF+ FGDK L + + +P+ +M V +
Sbjct: 1 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 60
Query: 92 GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------ 139
++ + I+ +Y Q + +E + ++++Q M A++ ++ K
Sbjct: 61 EEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELL 119
Query: 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 120 INITEHELVPEHVVMTKEEVTELLARYKLRENQL 153
>gi|302683883|ref|XP_003031622.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
gi|300105315|gb|EFI96719.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
Length = 210
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRL 74
M E R + RT+ +++ DRG+ V + E+ SL +F+ + + D L
Sbjct: 1 MASNEDDEVPRLWKVNRTIHELVKDRGFQVADYEINLSLDDFKSQYASQSRSVDRNQLNF 60
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
R + + ++ V + + + +R L G IL ++ + I+I NM ARK ++
Sbjct: 61 FTNHRDDTTDQIFVFFSDERSVGVKTMRKLLG-ILEEKGIRRGIIIFPGNMTPAARKVIV 119
Query: 135 KFPFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ V I +H L P+H VL E+ +L+++Y+++ Q+
Sbjct: 120 AMQSQYRLEEFSEADLLVNITHHTLVPQHIVLKPEEKRELLERYRLKETQL 170
>gi|209738396|gb|ACI70067.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 159
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + ++ + I+ +Y Q + +E + +++Q M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 140 VEIFYHILQ-------PKHEVLSAGERDKLMKKY 166
I LQ +HEV R K+M KY
Sbjct: 125 Y-ILEQFLQQELLINITEHEV----SRWKVMLKY 153
>gi|255941598|ref|XP_002561568.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586191|emb|CAP93939.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 234
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 46/198 (23%)
Query: 14 SSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC------ 67
S+H ME E R + + RTV ++L DRGY V ++EL L +FR + D
Sbjct: 5 SAHSMEA--EREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRT 62
Query: 68 -------DLESLRL---CLPLRSNPSKKML--VVY---------LGTEEIRTQAIRGLYG 106
E++++ LP ++NP+ + +Y +GT+++R +
Sbjct: 63 KMKIQARPTETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRA------FN 116
Query: 107 QILNKEALHGLILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLS 155
++++ H I I Q+ ++ A + + P + V I H L PKH +LS
Sbjct: 117 HLVDENNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLS 176
Query: 156 AGERDKLMKKYKIEGKQV 173
E+ KL+++Y+++ Q+
Sbjct: 177 PEEKAKLLERYRLKESQL 194
>gi|225718552|gb|ACO15122.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
clemensi]
Length = 210
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E+Y+ + R+TV+ + +DRGY V EL ++ +F+ FGDK + L + +
Sbjct: 6 ETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + IR Y + + +E + I+++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEDPKIGVKHIRT-YCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSA 156
+ + H L P+H V++
Sbjct: 125 YILEQFLESELLINLTEHDLVPEHVVMTP 153
>gi|149034606|gb|EDL89343.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034607|gb|EDL89344.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034608|gb|EDL89345.1| rCG29511, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Query: 38 QMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKKMLVVYLG 92
Q+ +DRGY V EL ++L EF+ FGDK L + + +P+ +M V +
Sbjct: 11 QLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPE 70
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------V 140
++ + I+ +Y Q + +E + ++++Q M A++ ++ K +
Sbjct: 71 EPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLI 129
Query: 141 EIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
I H L P+H V++ E +L+ +YK+ Q+
Sbjct: 130 NITEHELVPEHVVMTKEEVTELLARYKLRESQL 162
>gi|254570507|ref|XP_002492363.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238032161|emb|CAY70112.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328353624|emb|CCA40022.1| DNA-directed RNA polymerase II subunit E [Komagataella pastoris CBS
7435]
Length = 214
Score = 56.2 bits (134), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 24/177 (13%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
ME + S R + S RTV +M DRGY + E+ +SL EFR D +L +
Sbjct: 1 MEDNNRIIS-RLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKL-MS 58
Query: 78 LRSNPSKKMLVVY--LGT--------EEIRTQAIRGLYGQILNKEALHGLILILQSNMNT 127
+NP+ + L Y LGT + + +R +I K G I I Q+N+
Sbjct: 59 FLANPTPEALEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTG-IFIYQNNITP 117
Query: 128 FARKEVLKF-PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
A K + P +E F +H L PKH LS GE+ +L+++YK++ Q+
Sbjct: 118 SANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQL 174
>gi|331224607|ref|XP_003324975.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303965|gb|EFP80556.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGT 93
RT+ +++ DRGY V ++E+ SL EF+ + D +S RL + + + + VY
Sbjct: 15 RTIKELVRDRGYEVSDAEINVSLDEFKAS--DPISNKSTRLNFAAINPETNQGIYVYYSD 72
Query: 94 EEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY----- 144
E ++ I+ + + IL+++ L ILI M A K + F +E F
Sbjct: 73 E--KSVGIKTMRKFISILDEKKLESGILIYSQAMTPSANKVIASMAQQFTLEAFQEAELL 130
Query: 145 -----HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
HI+ PKHEV+ E+ L+ +Y+++ Q+
Sbjct: 131 VNITRHIMVPKHEVMKPEEKKALLARYRLKDTQL 164
>gi|393242192|gb|EJD49711.1| DNA-directed RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 209
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 15/170 (8%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR--FTFGDKCDLESLRLC 75
M E R + RT+ +M+ DRGY V E SL +FR T + +L
Sbjct: 1 MSNPTEEELVRLWKVSRTIHEMVRDRGYQVSEEETNMSLEQFRAQHTTNGTVNRTTLTFF 60
Query: 76 LPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK---- 131
+P+ ++ V + + + + +R + +L ++ + I++ M ARK
Sbjct: 61 THHAKDPNDQLFVFFCEDKNVSIKTMRK-FLDVLQQKGIQRGIIVFSGTMTPSARKVITG 119
Query: 132 --------EVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
E + V I HIL PKHEV++ + L+++Y+++ Q+
Sbjct: 120 MSQDYKLEEFAEADLIVNITQHILVPKHEVMTTEAKKALLERYRLKETQL 169
>gi|281202322|gb|EFA76527.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 288
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 42/188 (22%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + ++T+LQML+DRGY + +L +S EFR F + D+ S+ R + +
Sbjct: 3 EVTRLYQIQKTILQMLHDRGYMITPVQLDQSKDEFRRNFKSREDMNSIHTK---REDAAD 59
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKE-------ALHG------------------LIL 119
K+ + + ++ + I+ + ++ + H I+
Sbjct: 60 KIFIFFPNDPKVGVKPIKEVISTLIKPTNHLSIYLSTHNQTNTYRYVKRMKEIGGTRAII 119
Query: 120 ILQSNMNTFARKEVLKFP--------------FKVEIFYHILQPKHEVLSAGERDKLMKK 165
++Q M FA++ + +F V I +H L PKH +LS E+ +L+ K
Sbjct: 120 VVQQVMTPFAKQALAEFSQNREIVLENFNEAELLVNITHHQLVPKHILLSKEEKSELLAK 179
Query: 166 YKIEGKQV 173
YK++ Q+
Sbjct: 180 YKMKETQL 187
>gi|425770508|gb|EKV08978.1| hypothetical protein PDIP_66930 [Penicillium digitatum Pd1]
gi|425771874|gb|EKV10306.1| hypothetical protein PDIG_57390 [Penicillium digitatum PHI26]
Length = 234
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 36/193 (18%)
Query: 14 SSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC------ 67
S++ ME E R + + RTV ++L DRGY V ++EL L +FR + D
Sbjct: 5 SAYSMEA--EREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRT 62
Query: 68 -------DLESLRL---CLPLRSNPSKKML--VVYL----GTEEIRTQAIRGLYGQILNK 111
E+++L LP ++NP+ + +Y+ + + T+ +R + ++++
Sbjct: 63 KMKIQARPTETMKLKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRA-FNHLVDE 121
Query: 112 EALHGLILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERD 160
H I I Q+ ++ A + + P + V I H L PKH +LS E+
Sbjct: 122 NNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKG 181
Query: 161 KLMKKYKIEGKQV 173
KL+++Y+++ Q+
Sbjct: 182 KLLERYRLKESQL 194
>gi|385301817|gb|EIF45980.1| dna-directed rna polymerases ii 24 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 194
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 23/162 (14%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML----------V 88
M+ DRGY +P E+ L +FR F D + +L + ++ P++ L V
Sbjct: 1 MVKDRGYYIPQEEIDLPLDQFREKFCDSMGVPQRKL-MSFQATPTQDALEKYGDLGPLWV 59
Query: 89 VYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV-LKFPFKVEIF---- 143
+ + Q ++ I +K G I I Q NM A K + + P +EIF
Sbjct: 60 EFCDEPSVGIQTMKNFCAHIADKNFSTG-IFIYQQNMTPSATKAIAVAEPATIEIFQESE 118
Query: 144 ------YHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
+H L PKH LS E+ L+K+Y+++ Q+ + Q
Sbjct: 119 IVVNITHHELVPKHIRLSNEEKIDLLKRYRLKESQLPRIQSQ 160
>gi|295671500|ref|XP_002796297.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284430|gb|EEH39996.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 236
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E + + + RTV +ML DRGY V E+ L EFR + D R + + + PS+
Sbjct: 16 EMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPD-RNKMKISARPSQ 74
Query: 85 KMLVVY--------------LGT---------EEIRTQAIRGLYGQILNKEALHGLILIL 121
M+ Y GT + + T+ +R + ++++ H I I
Sbjct: 75 AMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRA-FNHFIDEQNYHTGIFIS 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
Q+ ++ A + + P + V I +H L PKH +LSA E+ +L+++Y+++
Sbjct: 134 QTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|237834761|ref|XP_002366678.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|211964342|gb|EEA99537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|221486036|gb|EEE24306.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
GT1]
gi|221503532|gb|EEE29223.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
VEG]
Length = 205
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG-DKCDLESLRLCLPLRSNPSKKM 86
R F +R+T ML DRGY V E S +F F ++C+ + L + +P +
Sbjct: 7 RLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVDPDNR- 65
Query: 87 LVVYLGTEEIRT--QAIRGLYGQILNKEALHGLILILQSNMNTFARKEV----------- 133
++VY E +T + IR L + + + + IL+ Q+ + FAR +
Sbjct: 66 VIVYFADETKKTGVKPIRELTER-MEERNIQRAILVTQNVLTAFARDAISEAAPRHIIEN 124
Query: 134 -LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
++ V I H L PKH L+ E+ L+ +Y+++ Q+
Sbjct: 125 FMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQL 165
>gi|226289047|gb|EEH44559.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 236
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 36/183 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E + + + RTV +ML DRGY V E+ L EFR + D R + + + PS+
Sbjct: 16 EMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPD-RNKMKISARPSQ 74
Query: 85 KMLVVY--------------LGT---------EEIRTQAIRGLYGQILNKEALHGLILIL 121
M+ Y GT + + T+ +R + ++++ H I I
Sbjct: 75 AMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRA-FNHFIDEQNYHTGIFIS 133
Query: 122 QSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
Q+ ++ A + + P + V I +H L PKH +LSA E+ +L+++Y+++
Sbjct: 134 QTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKE 193
Query: 171 KQV 173
Q+
Sbjct: 194 SQL 196
>gi|258563314|ref|XP_002582402.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907909|gb|EEP82310.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 239
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 37/185 (20%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR------FTFGDKCDLESLRLCL-- 76
E R + + +TV +ML DRGY V E+ SL +FR F D +R+
Sbjct: 16 EMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRISARP 75
Query: 77 -------------PLRSNPSKKMLVVYL----GTEEIRTQAIRGLYGQILNKEALHGLIL 119
P + NP + +Y+ + + T+ +R + ++++ H I
Sbjct: 76 SQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRA-FNHFVDEQNYHTGIF 134
Query: 120 ILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
I QS ++ A + + P + V I +H L PKH +LSA E+ +L+ +Y++
Sbjct: 135 ITQSPISPSAVRLLTGIPGRFCEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHRYRL 194
Query: 169 EGKQV 173
+ Q+
Sbjct: 195 KESQL 199
>gi|354480932|ref|XP_003502657.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cricetulus griseus]
Length = 235
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 25 ESYRYFLSRRTVLQ-------------------------MLNDRGYAVPNSELTRSLTEF 59
E+YR + R+T++Q + +DRGY V EL ++L EF
Sbjct: 6 ETYRLWKIRKTIMQASDRPASSPHPASGGLLRAHTALMGLCHDRGYLVTQDELDQTLEEF 65
Query: 60 RFTFGDKCD-----LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEAL 114
+ FGDK L + + +P+ +M V + ++ + I+ +Y Q + +E +
Sbjct: 66 KAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENI 124
Query: 115 HGLILILQSNMNTFARKEVLKFPFK------------VEIFYHILQPKHEVLSAGERDKL 162
++++Q M A++ ++ K + I H L P+H V++ E +L
Sbjct: 125 TRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTEL 184
Query: 163 MKKYKIEGKQV 173
+ +YK+ Q+
Sbjct: 185 LARYKLRESQL 195
>gi|344230604|gb|EGV62489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Candida
tenuis ATCC 10573]
gi|344230605|gb|EGV62490.1| hypothetical protein CANTEDRAFT_114816 [Candida tenuis ATCC 10573]
Length = 214
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + +TV +M+ DRGY + EL SL EFR D ++ +L + ++NP+ + L
Sbjct: 10 RLWRTFKTVKEMVRDRGYYISQEELDMSLDEFRQKICDSMNMPQRKL-MCFQANPTAESL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + + +R I + G I I QS++ A K +
Sbjct: 69 EKFPELGTLWVEFCDEDSVGIKTMRNFCIHISERNFSTG-IFIYQSSITPSANKLIPTVA 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS GE+ +L+ +Y+++ Q+
Sbjct: 128 PASIETFQESDLVVNITHHELVPKHIKLSKGEKKELLDRYRLKESQL 174
>gi|290462657|gb|ADD24376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Lepeophtheirus salmonis]
Length = 210
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLRLCLPLR 79
E Y+ + R+TV+ + +DRGY V EL +++ +F+ FGDK + L + +
Sbjct: 6 EIYKLWKVRKTVMCLCHDRGYLVTQDELDQTIEQFKIQFGDKPSEKQPSRNDLTILVAHN 65
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK 139
+P+ +M V + +I + IR Y + + +E + I+++Q+ M A++ ++ K
Sbjct: 66 DDPTDQMFVFFPEDPKIGIKHIRT-YCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAPK 124
Query: 140 ------------VEIFYHILQPKHEVLSA 156
+ + H L P+H V++
Sbjct: 125 YILEQFLESELLINLTEHDLVPEHVVMTP 153
>gi|323449166|gb|EGB05056.1| hypothetical protein AURANDRAFT_31430 [Aureococcus anophagefferens]
Length = 204
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 13/163 (7%)
Query: 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNP 82
S E+ F RRT+L+ML R Y V ++L S F+ FG++ L + ++
Sbjct: 3 SAEASHLFRIRRTLLKMLKKRNYVVDVAQLEMSSEAFQEQFGEQPKRTDLTILAEHETDA 62
Query: 83 SKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP----- 137
++ + E++ + I+ Y +++ + ++ IL++++ + FA+ + +
Sbjct: 63 EDQVFIFLPDEEKVGVKTIKQ-YCEMMKEASVSHAILVVKAGITPFAKTALQEMASMYLI 121
Query: 138 --FK-----VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F+ V+I H L P H+ LS ++ L+K+YK++ Q+
Sbjct: 122 EHFRDNELLVDITEHKLVPAHQPLSPEDKAALLKRYKLKESQL 164
>gi|409048291|gb|EKM57769.1| hypothetical protein PHACADRAFT_251606 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSN 81
E+ + + RT+ +++ DRG+ V + E+ L FR + ++ D L ++N
Sbjct: 6 ETAKLWKVNRTIHELVRDRGFQVSDDEIHMDLATFRSLYANQMGSVDRSQLNFFTNHQNN 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FK 139
P +++ + + + + +R + IL ++ + I++ M ARK ++ +K
Sbjct: 66 PMEQIFTFFSDEKSVGVKTMRKILN-ILEEKNIQRGIIVFPGIMTPSARKVIVAMASQYK 124
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L P+H+VL+ ++ L++KY+++ Q+
Sbjct: 125 LEEFSEADLLVNITHHTLVPRHDVLTPEQKKNLLEKYRLKETQL 168
>gi|405118149|gb|AFR92924.1| DNA-directed RNA polymerase II 24 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 255
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 12 TRSSHV---MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD--K 66
TR +H+ M + E R + RTV +M+ DRGY + + E+ S EF+ G
Sbjct: 38 TRINHLPSEMSHEANRELARLWRVSRTVHEMVRDRGYMLADYEINVSFEEFKDRHGATGS 97
Query: 67 CDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMN 126
D ++ S+ + K+ V + + + +++ G + A G+I I M+
Sbjct: 98 VDRSNMSFDAIHESDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGII-IWSEKMS 156
Query: 127 TFARKEVLK---------FP---FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
A+K + + FP V I H L PKH V+ E+ L+K+Y+++ Q+
Sbjct: 157 PAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQL 215
>gi|296424747|ref|XP_002841908.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638159|emb|CAZ86099.1| unnamed protein product [Tuber melanosporum]
Length = 220
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 34/179 (18%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE--SLRLCLPLRSNP 82
ES R + + RTV +M DRGY + E+T +L EFR + CD E +R L ++NP
Sbjct: 6 ESSRLWRAWRTVHEMAKDRGYEISEEEITITLEEFRHQY---CDGEGRPIRKNLTFKANP 62
Query: 83 SKKML-----------------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNM 125
S M+ V + I + +R + +N E H I I S+
Sbjct: 63 SPSMIKQHAPAPNQPATVGTLWVEFSAESNIGIKHMRA-FAHTINSENFHTGIFICSSHP 121
Query: 126 NTFARKEVLK-FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
A K V P +E+F H L P+H +LS E+ KL+++Y+++ Q+
Sbjct: 122 TPAAMKIVPTVLPSVIEVFLESDLLVNITKHELVPRHILLSREEKKKLLERYRLKESQL 180
>gi|399949804|gb|AFP65461.1| RNA polymerase I, II and III 24.3 kDa subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 216
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNS----ELTRSLTEFRFTFGDKCDLESLRLCLPLRS 80
E + F R+TV Q+L DRG+ V ++ ++ R++ E +F + E L + P
Sbjct: 7 EIFNVFRVRKTVFQILRDRGFIVLDNQEDLDMPRTVFERKFVKNYQIVREELEIIRPKWQ 66
Query: 81 NPSKKMLVVYLGTEE----IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
+ K+LV ++ E+ I ++IR Y + + ++ IL+L + + A++ +
Sbjct: 67 MENHKILVAFVQGEKGKLTIGVKSIRE-YCERIKQDNYESSILVLHGRLTSHAKQAISSI 125
Query: 137 -------------PFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L PKHE++S E+ L+K+Y I+ Q+
Sbjct: 126 NSVSDRIEYFSESELIINITEHCLVPKHEIISLEEKKSLLKRYSIKENQL 175
>gi|145230680|ref|XP_001389604.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus niger CBS 513.88]
gi|134055723|emb|CAK44096.1| unnamed protein product [Aspergillus niger]
gi|350638607|gb|EHA26963.1| hypothetical protein ASPNIDRAFT_205564 [Aspergillus niger ATCC
1015]
gi|358370671|dbj|GAA87281.1| RNA polymerase subunit [Aspergillus kawachii IFO 4308]
Length = 235
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 44/187 (23%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC------ 75
E R + + RTV +ML DRGY V E+ L EF+ + D D +++
Sbjct: 15 EMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKMKISARPTEA 74
Query: 76 -------LPLRSNPSKKML--VVY---------LGTEEIRTQAIRGLYGQILNKEALHGL 117
LP +SNP+ + +Y +GT+++RT + +++ H
Sbjct: 75 MQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRT------FNHFVDENNFHTG 128
Query: 118 ILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKY 166
+ I Q+ ++ A + + P + V I H L PKH +LS E+ +L+++Y
Sbjct: 129 VFITQTPISPSAVRLLSSMPGRICEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLERY 188
Query: 167 KIEGKQV 173
+++ Q+
Sbjct: 189 RLKESQL 195
>gi|215399667|gb|ACJ65826.1| RNA polymerase II [Oreochromis niloticus]
Length = 108
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 6/109 (5%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNP 82
R + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + + +P
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 83 SKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK 131
+ +M V + ++ + I+ +Y Q + +E + I+++Q M A++
Sbjct: 61 TDQMFVFFPEEPKVGIKTIK-MYCQRMQEENITRAIIVVQMGMTPSAKQ 108
>gi|300175741|emb|CBK21284.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 13/156 (8%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVV 89
F++R+ ++M+ RGY + ++ F FG++ D ESL + SN + L++
Sbjct: 12 FIARKNAIKMMTKRGYVLRMTDDMTKYDAFLSRFGNEPDYESLSVIGKRLSNKNDGCLLI 71
Query: 90 YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-------FK--- 139
+ + + AIR + Q L KE + I+++++ + + A+ KF FK
Sbjct: 72 FNDSPSLGAPAIREIIEQ-LEKENISSAIIVVKNRIPSTAKHACKKFEPIFHLDLFKESS 130
Query: 140 --VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V+I H L P H LS E +L+++ I ++
Sbjct: 131 LLVDITEHFLVPPHIALSEQETKELLERLSIPADKL 166
>gi|302423138|ref|XP_003009399.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261352545|gb|EEY14973.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346970556|gb|EGY14008.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 231
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 18 MEG--GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR--------------- 60
MEG G S E R + + RTV +M DRGY + SE+ SL FR
Sbjct: 1 MEGNDGQSKEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKL 60
Query: 61 -FTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGL-- 117
F+ D+ S P +NP+ + E I Q G+ Q L + H L
Sbjct: 61 TFSARPSSDMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGV--QHLRRFVQHVLEG 118
Query: 118 -----ILILQSNMNTFARKEVLKF------------PFKVEIFYHILQPKHEVLSAGERD 160
I++ S + + RK++L V I +H L PKH +LS E+
Sbjct: 119 HFKAGIMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKA 178
Query: 161 KLMKKYKIEGKQV 173
L+K+Y+++ Q+
Sbjct: 179 ALLKRYRLKETQL 191
>gi|156848515|ref|XP_001647139.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156117823|gb|EDO19281.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 215
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ SL +F+ + D R + ++NP+++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMG-RPQRKMMSFQANPTEETM 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 EKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTG-IFVYQTNVTPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+KKY+++ Q+
Sbjct: 129 PATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQL 175
>gi|343424911|emb|CBQ68449.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Sporisorium reilianum SRZ2]
Length = 208
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
E+ R + RT+ +++ DRGY V + E+ L F+ + G D L +
Sbjct: 6 ETVRLWRVNRTIHELVRDRGYQVADDEINVDLETFKAEYAPTGGAVDRTKLNFFTEHSEH 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFK 139
++++ V Y + + +R I+ + + I+I M + ARK + ++ F
Sbjct: 66 ANQRLFVFYSMERNVGVKTMRQFIS-IMEERDIQRGIIIWPEKMTSAARKVIDAMRGTFH 124
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L PKHE L E+ +L+++Y+++ Q+
Sbjct: 125 LEDFEEAFLLVNITHHHLVPKHEPLYPQEKKELLQRYRLKETQL 168
>gi|294944697|ref|XP_002784385.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239897419|gb|EER16181.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 28/170 (16%)
Query: 26 SYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD----KCDLESLRLCLPLRSN 81
+ R + R+T+ ++L DRGY V L + F + + K L + + + +
Sbjct: 10 TIRLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDD 69
Query: 82 PSKKMLVVY------LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
PS +++V + +G + IRT A++ + ++ L IL++Q + FA+ + +
Sbjct: 70 PSDQLIVFFPDENKRVGVKPIRTLALK------MEEQRLSRAILVVQQPLTAFAKTAIQE 123
Query: 136 FP--FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
++E+F +H L P+H+ L+A E+ L+++YK++ Q+
Sbjct: 124 ASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQL 173
>gi|365982519|ref|XP_003668093.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
gi|343766859|emb|CCD22850.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Length = 215
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ SL +F+ + D R + +SNP+++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMG-RPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ + E + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 AKFPDMGSLWAEFCDEESVGVKTMKNFVIHIQEKNFQTG-IFVYQTNVTPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQL 175
>gi|396500613|ref|XP_003845762.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
gi|312222343|emb|CBY02283.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
Length = 412
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 47/188 (25%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG-DKCDLESLRL---CLP------ 77
R + RT +M+ DRGY V + T SL EF FG + + + RL CLP
Sbjct: 12 RLWRVWRTAKEMMRDRGYMVLEEDTTMSLAEFTSKFGREDGEPDRSRLNFSCLPSEEMLA 71
Query: 78 -LRSNPSKK----------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQS--- 123
P+KK + V + E + + +R G +LN G+++ +Q+
Sbjct: 72 KYTPAPTKKDPNPVPQIGSIWVEFNSDENVGLKQLRDYMGHLLNGNFYSGVMITVQAMTG 131
Query: 124 ------------------NMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKK 165
+ F +++L V I H L PKH +LSA E+ +L+K+
Sbjct: 132 MAIRLLRGATSMSDGPKGGVEVFVEQDLL-----VNITKHELVPKHVLLSAEEKQQLLKR 186
Query: 166 YKIEGKQV 173
Y+++ Q+
Sbjct: 187 YRLKETQL 194
>gi|124514006|ref|XP_001350359.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|23615776|emb|CAD52768.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 205
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R++ R+T +ML DRGY + E + + F+ F D S N S +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKNDSNNRI 66
Query: 88 VVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFARKEV------------ 133
+VY +E++ ++ L + + ++++ IL+ Q+ + FAR +
Sbjct: 67 IVYFA-DEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIENF 125
Query: 134 LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKI 168
L V I H L P+H L++ E+ L+++YKI
Sbjct: 126 LDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKI 160
>gi|50426767|ref|XP_461981.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
gi|54036338|sp|Q6BIJ0.1|RPAB1_DEBHA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49657651|emb|CAG90451.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
Length = 214
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + S +TV +M+ DRGY + E+ SL EFR D ++ +L + ++NP+ + L
Sbjct: 10 RLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKL-MCFQANPTAESL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K G I I QS++ A K +
Sbjct: 69 EKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPSANKLIPTVS 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH L+ E+ +L+++Y+++ Q+
Sbjct: 128 PASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQL 174
>gi|326430122|gb|EGD75692.1| polymerase II polypeptide E [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 35 TVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTE 94
T +Q+ +DRGY+VP++E+++ TEF FG L + + ++ + +
Sbjct: 12 TTVQLCSDRGYSVPHTEVSK--TEFEQRFGSDPRPSELDSVFAHKKDEQNRIAIFWADDL 69
Query: 95 EIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP---FKVEIF-------- 143
+I ++ Y L ++ ++ I++ Q+ + A K V V++F
Sbjct: 70 KIGISKVKE-YLDKLTQQGINAGIIVAQAKLTPSASKAVRDAASAGITVQVFDITELIVN 128
Query: 144 --YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H L P+H VLS E+ L+++YK++ +Q+
Sbjct: 129 ITRHELVPQHVVLSKEEKQALLQRYKLQEQQL 160
>gi|443896772|dbj|GAC74115.1| hypothetical protein PANT_10d00023 [Pseudozyma antarctica T-34]
Length = 283
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
E+ R + +T+ +++ DRGY V + E+ L F+ + G D L ++
Sbjct: 81 ETVRLWRVNKTIHELVRDRGYQVADDEINIDLESFKAEYAPTGGSVDRTKLNFFTEHSAH 140
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFK 139
++++ V Y + + +R I+ + + I+I M + ARK + ++ F
Sbjct: 141 ENQRLFVFYSMERNVGVKTMRQFIS-IMEERDIQRGIIIWPDKMTSAARKVIDAMRGTFH 199
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L P+HE L E+ +L+++Y+++ Q+
Sbjct: 200 LEDFEEAYLLVNITHHHLVPRHEPLYPDEKKELLQRYRLKETQL 243
>gi|428177456|gb|EKX46336.1| hypothetical protein GUITHDRAFT_163048 [Guillardia theta CCMP2712]
Length = 231
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 39/193 (20%)
Query: 18 MEGGGSLESY--RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLC 75
M G + Y R F R+T ML DRG+ V N + ++ +F+ T D+ + L
Sbjct: 1 MSNDGPIIEYCSRIFQIRKTCWSMLEDRGFKVTNENKSETIVQFKETCTDRGHILDPGL- 59
Query: 76 LPLRS----NPSKKMLVVYLG-TEEIRTQAIRGLYGQILNK------EALHGLILILQSN 124
L +RS N ++++V++ G ++ T + ++ I ++ E+L +++I N
Sbjct: 60 LTMRSHRVENEKQRIMVLFCGRKDKFVTDDAKYVFSCIDDEWKNTQAESLTAVVII-HKN 118
Query: 125 MNTFARKEV--------------------LKFPFKVEIFYHILQ----PKHEVLSAGERD 160
+ ++A++ + L F+VE+ +I + PKH ++S E+
Sbjct: 119 LTSYAKRFLVTEHQKRYHGGGEGPRMKIELNIFFEVELVVNITEHEMVPKHRIMSGVEKK 178
Query: 161 KLMKKYKIEGKQV 173
KL+++YK+ Q+
Sbjct: 179 KLLQRYKVNDDQL 191
>gi|12229927|sp|Q9P4B9.1|RPAB1_KLUMA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|9651716|gb|AAF91238.1|AF225206_4 RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ SL +F+ + D + R + +SNP+++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMG-KPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK------ 131
+ V + + + ++ I K G I I QS + A K
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 132 --EVLKFP---FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ FP V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQL 175
>gi|449681257|ref|XP_002162780.2| PREDICTED: uncharacterized protein LOC100208454, partial [Hydra
magnipapillata]
Length = 383
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKKMLVVYLGT 93
M +DR Y V EL ++L +F FGD+ + + + +P+ +M V +
Sbjct: 1 MCHDRRYLVTQDELDQTLEQFIEQFGDRPSEGHPSRGDISVLVAHNDDPTDQMFVFFPEE 60
Query: 94 EEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------VE 141
E++ + I+ Y + +E ++ I+++Q+ M A++ ++ K +
Sbjct: 61 EKVGIKTIKQ-YCTRMQEEGINRAIIVVQTGMTPSAKQALVDMAPKYILEQFLEAELLIN 119
Query: 142 IFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ H L P+H VLS E+ +L+ +YK++ Q+
Sbjct: 120 VTEHNLVPEHVVLSPEEKAELLTRYKLKDHQL 151
>gi|410081459|ref|XP_003958309.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
gi|372464897|emb|CCF59174.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
Length = 215
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + +TV +M+ DRGY V + E+ SL +F+ + D R + ++NP+ + L
Sbjct: 11 RLWRTFKTVKEMVKDRGYFVNDEEIDLSLEDFKAKYSDSMG-RPQRKMMSFQANPNDEFL 69
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
V + + + ++ I K G I I Q+N+ A K V P
Sbjct: 70 AKFPDLGSLWVEFCDEPSVGVKTMKNFVVHIQEKNYSTG-IFIYQNNVTPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFQEASLVVNITHHELVPKHIRLSLEEKKELLKRYRLKESQL 175
>gi|388855814|emb|CCF50598.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Ustilago hordei]
Length = 236
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
E+ R + RT+ +++ DRGY V + E+ L F+ + G D L +
Sbjct: 6 ETVRLWRVNRTIHELVRDRGYQVADDEINIDLETFKSEYAPTGGSVDRTKLNFFTEHSEH 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFK 139
++++ V Y + + +R I+ + + I+I M + ARK + ++ F
Sbjct: 66 ENQRLFVFYSMERNVGVKTMRQFIS-IMEERDIQRGIIIWPEKMTSAARKVIDAMRGTFH 124
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E F +H L PKHE L E+ +L+ +Y+++ Q+
Sbjct: 125 LEDFEEAFLLVNITHHHLVPKHEPLYPQEKKELLARYRLKETQL 168
>gi|50290313|ref|XP_447588.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036350|sp|Q6FQA6.1|RPAB1_CANGA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49526898|emb|CAG60525.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + EL +L +F+ + D + R + ++NP+++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMG-RAQRKMMSFQANPTEESM 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K+ G I I Q+N+ A K V P
Sbjct: 70 TKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH L+ E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQL 175
>gi|121701167|ref|XP_001268848.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
gi|119396991|gb|EAW07422.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
Length = 234
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC------ 75
E R + + RTV +ML DRGY V E+ L EFR + D D +++
Sbjct: 14 EMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARPTAA 73
Query: 76 -------LPLRSNPSKKML--VVY---------LGTEEIRTQAIRGLYGQILNKEALHGL 117
LP +NP + +Y +GT+++R + +++ H
Sbjct: 74 MQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRA------FNHFVDENNFHTG 127
Query: 118 ILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKY 166
+ I Q+ ++ A + + P + V I H L PKH +LS E+ L+++Y
Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187
Query: 167 KIEGKQV 173
+++ Q+
Sbjct: 188 RLKESQL 194
>gi|294950415|ref|XP_002786618.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239900910|gb|EER18414.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 26 SYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD----KCDLESLRLCLPLRSN 81
+ R + R+T+ ++L DRGY V L + F + + K L + + + +
Sbjct: 10 TIRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDD 69
Query: 82 PSKKMLVVY------LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
PS +++V + +G + IRT A++ + ++ L IL++Q + FA+ + +
Sbjct: 70 PSDQLIVFFPDENKRVGVKPIRTLALK------MEEQRLSRAILVVQQPLTAFAKTAIQE 123
Query: 136 FP--FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
++E+F +H L P+H+ L+ E+ L+++YK++ Q+
Sbjct: 124 ASPQMEIEVFNESELVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQL 173
>gi|119495104|ref|XP_001264345.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
gi|119412507|gb|EAW22448.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
Length = 234
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRLC------ 75
E R + + RTV +ML DRGY V E+ L EFR + D D +++
Sbjct: 14 EMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARPTAA 73
Query: 76 -------LPLRSNPSKKML--VVY---------LGTEEIRTQAIRGLYGQILNKEALHGL 117
LP +NP + +Y +GT+++R + +++ H
Sbjct: 74 MQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRA------FNHFVDENNFHTG 127
Query: 118 ILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKY 166
+ I Q+ ++ A + + P + V I H L PKH +LS E+ L+++Y
Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187
Query: 167 KIEGKQV 173
+++ Q+
Sbjct: 188 RLKESQL 194
>gi|320582063|gb|EFW96281.1| RNA polymerase subunit ABC27 [Ogataea parapolymorpha DL-1]
Length = 214
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ SL +FR D + +L + ++N S++
Sbjct: 10 RLWRAYRTVKEMVRDRGYYITQEEIDISLDQFREKICDSMGMPQRKL-MSFQANASQEAA 68
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV-LKF 136
+ V + + ++ I +K G I I Q NM A K + +
Sbjct: 69 EKYGDLGPLWVEFCDEPSVGITTMKNFCQHIADKNFATG-IFIYQQNMTPSATKAIAVAE 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+ +Y+++ Q+
Sbjct: 128 PAIIETFQEADIIVNITHHELVPKHIRLSTEEKKELLARYRLKESQL 174
>gi|164656180|ref|XP_001729218.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
gi|159103108|gb|EDP42004.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
Length = 159
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR--FTFGDKCDLESLRLCLPLRSNP 82
E+ R + RT+ +++ DRGY V EL L F+ T D + + P
Sbjct: 6 ETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHKDKP 65
Query: 83 SKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFKV 140
+++ V Y + + +R + K G+I I M + A+K E ++ +
Sbjct: 66 EERLFVFYSTERNVGVKTMRQFINILEEKNITRGII-IWSDKMTSAAKKVIEAMRLQLVL 124
Query: 141 EIF----------YHILQPKHEVLSAGERDKLMKK 165
E F +H L PKHEVL+ E+ +L+ +
Sbjct: 125 EDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159
>gi|182676597|sp|Q54EH2.2|RPAB1_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 197
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLG 92
R+TVLQML+DR Y + E F E+L + + +P+ + V +
Sbjct: 11 RKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPD 63
Query: 93 TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------- 139
T ++ I+ Y I+ + I+++Q N+ FA++ + +F +
Sbjct: 64 TPKVGVTQIKK-YVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAEL 122
Query: 140 -VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH +L+ E+ +L+ +YK++ Q+
Sbjct: 123 LVNITHHQLVPKHILLTKEEKLELLTRYKMKESQL 157
>gi|392576849|gb|EIW69979.1| hypothetical protein TREMEDRAFT_29545 [Tremella mesenterica DSM
1558]
Length = 218
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLR-LCLPLRSN----- 81
R + RTV +M+ DRGY V E+ +S +F+ G +E + L + R+N
Sbjct: 11 RLWRVSRTVHEMVRDRGYLVAEYEIEQSFEDFKDAHGSSGVVEMKKELIVNSRNNMHFTC 70
Query: 82 -----PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
++LV + + +I+ GQ+ ++ A G ILI M + A K +++
Sbjct: 71 DHSERTGDRLLVWFCPERNVPKSSIKIFLGQMEHRSANKG-ILIHPDKMGSAANKAMMEM 129
Query: 137 PFK------------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ V I H L PKH ++ E+ L+K+Y+++ Q+
Sbjct: 130 QAEYHLESFSEADLLVNITRHFLVPKHTIMRPEEKAALIKRYRLKETQL 178
>gi|15242916|ref|NP_200606.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
gi|9758367|dbj|BAB08868.1| RNA polymerase I, II and III 24.3 kDa subunit-like protein
[Arabidopsis thaliana]
gi|332009598|gb|AED96981.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
Length = 210
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG---DKCDLESLRLCLPLRSN 81
E R F RRTVLQML DRGY + S+L EF F +K + E+L + N
Sbjct: 7 EITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPN 66
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFK 139
P+ K+ V Y ++ I+ + + +H I+++ + AR V L
Sbjct: 67 PADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLT 126
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E+F H L K+ VL + KL+ Y ++ Q+
Sbjct: 127 IEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQL 170
>gi|440302517|gb|ELP94824.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Entamoeba invadens IP1]
Length = 217
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG---DKCDLESLRLCLPLRSNPSK 84
R + +TVL ML DRGY + + +L EFR G D D L + +
Sbjct: 18 RVYHVWKTVLDMLKDRGYVTNDLDHQTTLDEFRERVGVGADGVDRGKLTIKAVREGSADD 77
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILI---LQSNMNTFARKEVLKFPFK-- 139
++V++ ++++T+ R ++ +E +++ L S + F K ++
Sbjct: 78 GIIVLFAKDDKMKTEVFRSYAEEVQGQECKRAIVVYRGQLSSVIVQFVNSSEQKVKWELL 137
Query: 140 ------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVK 178
V + H+L P+H L+ E+ ++KKY+++ Q+ L+K
Sbjct: 138 LEDELIVNVTKHVLVPEHIKLTDEEKQAVLKKYQVKESQLPRLLK 182
>gi|367006695|ref|XP_003688078.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
gi|357526385|emb|CCE65644.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDL--ESLRLCLPLRSNPSKKML---- 87
RTV +M+ DRGY + E+ L +FR + CD + R + ++NP+++ L
Sbjct: 17 RTVKEMVRDRGYFISQDEIELPLEDFRAKY---CDYMGKPQRKMMSFQANPTEESLEKFP 73
Query: 88 ------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP---- 137
V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 74 ETGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTG-IFVYQTNVTPSAMKLVPSIPPATI 132
Query: 138 -------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ L+K+Y+++ Q+
Sbjct: 133 ETFHEASLVVNITHHELVPKHIRLSEEEKKDLLKRYRLKESQL 175
>gi|169806439|ref|XP_001827964.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
gi|161779104|gb|EDQ31129.1| DNA-directed RNA polymerase, subunit H, RpoH-RPB5 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 26/167 (15%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG----DKCDLESLRLCLPLRSNPSKK 85
+L+R T+++ML DRGY S ++ L +F+ TF C+ ++R N + K
Sbjct: 10 WLARNTIIEMLTDRGYIFEQSIFSQ-LEDFKNTFNLEDSTSCNFTAIR-------NVNDK 61
Query: 86 MLVV---YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEI 142
+++ + +++ + I + N +++ LILI + +N A + K F +E+
Sbjct: 62 VILCAIHFTSNDKLSKKQIETIITDYSN-QSISKLILISCNKLNHAALAYLDKSNFSIEL 120
Query: 143 FY----------HILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
F HIL P H+++S E+ L+ K + I++K+
Sbjct: 121 FLYKDILFNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPIILKK 167
>gi|448112295|ref|XP_004202060.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359465049|emb|CCE88754.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + +TV +M+ DRGY + E+ SL EFR D + RL + ++NP+ + L
Sbjct: 10 RLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRL-MCFQANPTAEAL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K G I I Q+++ A K +
Sbjct: 69 EKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQASITPSATKLIPTVS 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+ +Y+++ Q+
Sbjct: 128 PASIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQL 174
>gi|367013608|ref|XP_003681304.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
gi|359748964|emb|CCE92093.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
Length = 215
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RT+ +M+ DRGY + E+ SL +F+ + D R + +SNP+++
Sbjct: 11 RLWRTFRTMKEMVKDRGYFIAQEEIELSLEDFKVKYCDSMG-RPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 TKFPNLGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHEASLVVNITHHELVPKHIKLSEEEKKELLKRYRLKESQL 175
>gi|58259413|ref|XP_567119.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107497|ref|XP_777633.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223256|gb|AAW41300.1| DNA-directed RNA polymerases ii 24 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 221
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 27/182 (14%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
M + E R + RTV +M+ DRGY + + E+ S EF+ G +E ++
Sbjct: 1 MSNEANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQA 60
Query: 78 LRS--------------NPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQS 123
+S + + K+ V + + + +++ G + A G+I I
Sbjct: 61 DKSSSRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGII-IWSE 119
Query: 124 NMNTFARKEVLK---------FP---FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGK 171
M+ A+K + + FP V I H L PKH V+ E+ L+K+Y+++
Sbjct: 120 KMSPAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKET 179
Query: 172 QV 173
Q+
Sbjct: 180 QL 181
>gi|330803783|ref|XP_003289882.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325080041|gb|EGC33614.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 196
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 80/157 (50%), Gaps = 27/157 (17%)
Query: 33 RRTVLQMLNDRGY--AVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVY 90
R+TV+QML+DRGY + ++E+ R +T + + L++ + +P++ + V +
Sbjct: 11 RKTVIQMLSDRGYITSAIDAEVPRDIT----------NRDELKIYCVKKDDPTESVYVFF 60
Query: 91 LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP------------- 137
++ I+ Y +++ + I+++Q N+ FA++ +++
Sbjct: 61 PEVPKVGVTHIKK-YVELMKSRQTNRAIIVVQQNITPFAKQALVEISQDKKIVLEQFNEA 119
Query: 138 -FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH +L+ E+ +L+ +YK++ Q+
Sbjct: 120 ELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQL 156
>gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|40746238|gb|EAA65394.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|259488970|tpe|CBF88854.1| TPA: RNA polymerase subunit (AFU_orthologue; AFUA_1G14110)
[Aspergillus nidulans FGSC A4]
Length = 235
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 44/187 (23%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF-GDK--CDLESLRL------- 74
E+ R + + RTV +ML DRGY V E+ L EF+ + G+K E L++
Sbjct: 15 ETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARPTEA 74
Query: 75 ------CLPLRSN--PSKKMLVVYL---------GTEEIRTQAIRGLYGQILNKEALHGL 117
LP SN P +Y+ GT+++RT + +++ H
Sbjct: 75 MKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRT------FNHTVDEGNFHTG 128
Query: 118 ILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKY 166
I I ++ ++ A + + P + V I H L PKH +LS E+ KL+++Y
Sbjct: 129 IFITKTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRY 188
Query: 167 KIEGKQV 173
+++ Q+
Sbjct: 189 RLKESQL 195
>gi|406866728|gb|EKD19767.1| RNA polymerase subunit [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 231
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 28/180 (15%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRS 80
G E+ R + + RTV +M+ DRGY + E+ S +F+ T+ D R + +
Sbjct: 13 AGDREAARLWRAWRTVHEMVADRGYELSEEEVKISFADFKSTYT-LADGSINRKGMQFSA 71
Query: 81 NPSKKMLVVYL---GTEEIRTQAIRGL------------YGQILNKEALHGLILILQSNM 125
PS KM+ Y GT +I T + L + Q + + IL+ +
Sbjct: 72 RPSDKMMKQYALPDGTSDIGTVWVEFLNETNVGIKQMRTFAQYCSANSFATGILVTAVTI 131
Query: 126 NTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
A K + + V I +H L PKH LS E+ L+++Y+++ Q+
Sbjct: 132 TPAALKIIPAVASETRIECFMDADLLVNITHHELVPKHITLSRDEKKALLERYRLKDTQL 191
>gi|213405090|ref|XP_002173317.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001364|gb|EEB07024.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 211
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF-GDKCDLESLRLCLPLRSNPSKKM 86
+ F +TV Q+++DRGYAV SEL +L +FR G +L+ L + P
Sbjct: 11 KVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFYAKPPPGSDK 70
Query: 87 LVVY--------LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKF 136
+Y +G +E+RT + L ILI +NM A K +
Sbjct: 71 GTIYVEFAKEPSVGIKEMRT------FVHTLGDHNHKTGILIYANNMTPSATKIISTVTG 124
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F +E F +H L PKH +L+ E+ +L+ +YK+ Q+
Sbjct: 125 QFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQL 171
>gi|50311991|ref|XP_456027.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036341|sp|Q6CJ62.1|RPAB1_KLULA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49645163|emb|CAG98735.1| KLLA0F21098p [Kluyveromyces lactis]
Length = 215
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + +TV +M+ DRGY + E+ SL +F+ + D + R + +SNP+++
Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMG-KPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK------ 131
+ V + + + ++ I K G I I QS + A K
Sbjct: 70 EKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAA 128
Query: 132 --EVLKFP---FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ FP V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQL 175
>gi|317137040|ref|XP_003190012.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus oryzae RIB40]
Length = 235
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + + RTV +ML DRGY V E+ SL EF+ + D R + +++ P++
Sbjct: 15 EMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPLGYPD-RNKMKVQARPTE 73
Query: 85 KML-------------------VVY---------LGTEEIRTQAIRGLYGQILNKEALHG 116
M ++Y +GT+++R + ++++ H
Sbjct: 74 AMQHKYTAIKTNANPDPQPDCGIIYVEFCPDSTGVGTKQVRA------FNHVVDENNFHT 127
Query: 117 LILILQSNMNTFARKEVLKFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKK 165
+ I Q+ ++ A + + P + V I H L PKH +LS E+ KL+ +
Sbjct: 128 GVFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLAR 187
Query: 166 YKIEGKQV 173
Y+++ Q+
Sbjct: 188 YRLKESQL 195
>gi|160331077|ref|XP_001712246.1| rpabc5 [Hemiselmis andersenii]
gi|159765693|gb|ABW97921.1| rpabc5 [Hemiselmis andersenii]
Length = 216
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 22/165 (13%)
Query: 30 FLSRRTVLQMLNDRGYAV----PNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK 85
F RRT+LQML DR Y V + E++RS E +F + L + + +
Sbjct: 12 FKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKWLEENMR 71
Query: 86 MLVVYLGTEE----IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK---EVLKFPF 138
+LVV++ E+ I ++IRG +I ++ I++L + + A++ +
Sbjct: 72 ILVVFIEGEKEKSAIGVKSIRGFCERI-KQDGFQNSIIVLHGKLTSHAKQAINSINSLDD 130
Query: 139 KVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
K+E F H L PKHE++S E L K+Y I Q+
Sbjct: 131 KIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQL 175
>gi|71019505|ref|XP_759983.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
gi|46099489|gb|EAK84722.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
Length = 554
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 16/156 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSN 81
E+ R + RT+ +++ DRGY V + E++ L F+ + G D L +
Sbjct: 6 ETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHGEH 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFPFK 139
++++ V Y + + +R + I+ + + I+I M + ARK + ++ F
Sbjct: 66 ENQRLFVFYSSDRNVGVKTMRQ-FISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTFH 124
Query: 140 VEIF----------YHILQPKHEVLSAGERDKLMKK 165
+E F +H L PKHE L E+ +L+++
Sbjct: 125 LEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
>gi|1680605|gb|AAC60556.1|S59774_1 RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVEWPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS+ E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
>gi|22902245|gb|AAH37681.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|148699663|gb|EDL31610.1| mCG13422, isoform CRA_c [Mus musculus]
Length = 96
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLG 92
+P+ +M V + G
Sbjct: 66 DDPTDQMFVFFPG 78
>gi|448114850|ref|XP_004202684.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359383552|emb|CCE79468.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + +TV +M+ DRGY + E+ SL EFR D + RL + ++NP+ +
Sbjct: 10 RLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRL-MCFQANPTAEEL 68
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
+ V + + + +R I K G I I Q+++ A K +
Sbjct: 69 EKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQASITPSATKLIPTVS 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+ +Y+++ Q+
Sbjct: 128 PASIETFQESDLVVNITHHELVPKHIKLSKDEKKELLDRYRLKESQL 174
>gi|358054002|dbj|GAA99801.1| hypothetical protein E5Q_06504 [Mixia osmundae IAM 14324]
Length = 298
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 20/176 (11%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLC 75
M+ + R + RTV ++ DRGY + E+ SL +F +T D +L
Sbjct: 1 MDDDTERDIARVWRVNRTVRELCRDRGYTMSEQEINMSLQKFTESYTMNGHLDRTALNFH 60
Query: 76 ----LPLRSNPSKKMLVVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNMNTFA 129
+P+ ++ +Y+ E R+ I+ + + +L LH ILI + ++ A
Sbjct: 61 ASRHVPVAGREETEVQQIYVFFAEERSLGIKPVREFLTVLLDRNLHSGILIYKQSITPPA 120
Query: 130 RKEVLKF------------PFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ + + V I H L PKHEVLS ++ +L+KKY+++ Q+
Sbjct: 121 LRALAQAGQHTTAEALSESELLVNITQHTLVPKHEVLSPMDKAELLKKYRLKDTQL 176
>gi|403218074|emb|CCK72566.1| hypothetical protein KNAG_0K02020 [Kazachstania naganishii CBS
8797]
Length = 215
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RT+ +M+ DRGY + E+ SL +F+ + D R + ++NP ++
Sbjct: 11 RLWRTFRTIKEMVKDRGYFITQEEVELSLEDFKVKYCDSMG-RPQRKMMSFQANPMEEAI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 AKFPDMGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQIG-IFVYQNNVTPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHETSLVVNITHHELVPKHIKLSTDEKKELLKRYRLKESQL 175
>gi|444321044|ref|XP_004181178.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
gi|387514222|emb|CCH61659.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
Length = 215
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + RTV +M+ DRGY + E+ SL +F+ + + R + ++NP+++ L
Sbjct: 11 RLWRTFRTVKEMVRDRGYFITQEEIDLSLEDFKSKYTNSMGTPE-RKNISFQANPTEETL 69
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 AKFPELGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+KKY+++ Q+
Sbjct: 129 PATIETFHEASLIVNITHHELVPKHIRLSDEEKKELLKKYRLKESQL 175
>gi|126275976|ref|XP_001386931.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
gi|126212800|gb|EAZ62908.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
Length = 213
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F S +TV +M+ DRGY + E+ SL EFR D +L + ++NP+ + L
Sbjct: 9 RLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKL-MCFQANPTAESL 67
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K G I I Q+++ A K +
Sbjct: 68 DKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQNSITPSANKLIPTVS 126
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+ +Y+++ Q+
Sbjct: 127 PASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQL 173
>gi|378727418|gb|EHY53877.1| DNA-directed RNA polymerase II subunit E [Exophiala dermatitidis
NIH/UT8656]
Length = 238
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 34/186 (18%)
Query: 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN 81
G E R + + RTVL+ML DRGYA+ EL + +F+ FGD R + L++
Sbjct: 13 GEKELTRLWRTWRTVLEMLVDRGYAIAQDELAITRDDFQRKFGDPSTGHVERRLMKLQAV 72
Query: 82 PSKKML-------------------VVYLGTEEIRTQAIRGL--YGQILNKEALHGLILI 120
P+++M+ +++ T I+ L + Q L+ I I
Sbjct: 73 PTEEMIKRDTPRPTKSNPNPQTTAGTIWVEFSPETTIGIKHLRAFAQHLDANKFTTGIFI 132
Query: 121 LQSNMNT--------FARKEVLKFPFK-----VEIFYHILQPKHEVLSAGERDKLMKKYK 167
S + A + + F+ V I H L PKH +LSA E+ L+ +Y+
Sbjct: 133 TISPVTAAALRAFEPLAERGITAEWFQESDLLVNITRHELVPKHVLLSAEEKKVLLDRYR 192
Query: 168 IEGKQV 173
++ Q+
Sbjct: 193 LKETQL 198
>gi|366996969|ref|XP_003678247.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
gi|342304118|emb|CCC71905.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
Length = 215
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ SL +F+ + D R + ++NP+++
Sbjct: 11 RLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKTKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 AKFPSMGSLWAEFCDEPSVGVKTMKSFVIHIQEKNFQTG-IFVFQTNVTPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHEASLVVNITHHELVPKHIRLSEEEKRELLKRYRLKESQL 175
>gi|6319630|ref|NP_009712.1| Rpb5p [Saccharomyces cerevisiae S288c]
gi|133338|sp|P20434.1|RPAB1_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=ABC27; AltName: Full=DNA-directed
RNA polymerases I, II, and III 27 kDa polypeptide
gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
gi|14278327|pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278338|pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278368|pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
gi|20150716|pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749620|pdb|1NIK|E Chain E, Wild Type Rna Polymerase Ii
gi|30749741|pdb|1NT9|E Chain E, Complete 12-Subunit Rna Polymerase Ii
gi|34810557|pdb|1PQV|E Chain E, Rna Polymerase Ii-Tfiis Complex
gi|46015418|pdb|1R5U|E Chain E, Rna Polymerase Ii Tfiib Complex
gi|46015783|pdb|1SFO|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965914|pdb|1R9S|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965926|pdb|1R9T|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966110|pdb|1TWA|E Chain E, Rna Polymerase Ii Complexed With Atp
gi|56966124|pdb|1TWC|E Chain E, Rna Polymerase Ii Complexed With Gtp
gi|56966134|pdb|1TWF|E Chain E, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966144|pdb|1TWG|E Chain E, Rna Polymerase Ii Complexed With Ctp
gi|56966154|pdb|1TWH|E Chain E, Rna Polymerase Ii Complexed With 2'datp
gi|58177168|pdb|1WCM|E Chain E, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679448|pdb|1Y1W|E Chain E, Complete Rna Polymerase Ii Elongation Complex
gi|61679465|pdb|1Y77|E Chain E, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679506|pdb|1Y1V|E Chain E, Refined Rna Polymerase Ii-tfiis Complex
gi|61679519|pdb|1Y1Y|E Chain E, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754247|pdb|2B63|E Chain E, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590858|pdb|2B8K|E Chain E, 12-Subunit Rna Polymerase Ii
gi|122920064|pdb|2E2H|E Chain E, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920079|pdb|2E2I|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920094|pdb|2E2J|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921033|pdb|2NVQ|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921069|pdb|2NVT|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921085|pdb|2NVX|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921100|pdb|2NVY|E Chain E, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921112|pdb|2NVZ|E Chain E, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104678|pdb|2JA5|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104693|pdb|2JA6|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104714|pdb|2JA7|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104726|pdb|2JA7|Q Chain Q, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104738|pdb|2JA8|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387187|pdb|2YU9|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877777|pdb|2R7Z|E Chain E, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172231|pdb|2R92|E Chain E, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172244|pdb|2R93|E Chain E, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613466|pdb|2VUM|E Chain E, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368737|pdb|3CQZ|E Chain E, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983594|pdb|3FKI|E Chain E, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781919|pdb|3GTG|E Chain E, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781932|pdb|3GTJ|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781945|pdb|3GTK|E Chain E, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781958|pdb|3GTL|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781971|pdb|3GTM|E Chain E, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781985|pdb|3GTO|E Chain E, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781998|pdb|3GTP|E Chain E, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782011|pdb|3GTQ|E Chain E, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104515|pdb|3H3V|F Chain F, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839445|pdb|3HOU|E Chain E, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839460|pdb|3HOU|Q Chain Q, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839475|pdb|3HOV|E Chain E, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839490|pdb|3HOW|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839505|pdb|3HOX|E Chain E, Complete Rna Polymerase Ii Elongation Complex V
gi|254839520|pdb|3HOY|E Chain E, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839535|pdb|3HOZ|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471950|pdb|3I4M|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471965|pdb|3I4N|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618769|pdb|3K1F|E Chain E, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914555|pdb|3K7A|E Chain E, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982478|pdb|3M3Y|E Chain E, Rna Polymerase Ii Elongation Complex C
gi|295982491|pdb|3M4O|E Chain E, Rna Polymerase Ii Elongation Complex B
gi|325053967|pdb|3PO2|E Chain E, Arrested Rna Polymerase Ii Elongation Complex
gi|325053982|pdb|3PO3|E Chain E, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634542|pdb|3QT1|E Chain E, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197459|pdb|3RZD|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197471|pdb|3RZO|E Chain E, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197483|pdb|3S14|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197495|pdb|3S15|E Chain E, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197507|pdb|3S16|E Chain E, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197519|pdb|3S17|E Chain E, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197531|pdb|3S1M|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197543|pdb|3S1N|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197555|pdb|3S1Q|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197567|pdb|3S1R|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197579|pdb|3S2D|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781200|pdb|3S2H|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251637|pdb|3J0K|E Chain E, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380840|pdb|4A3C|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546294|pdb|4A3B|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546312|pdb|4A3D|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546329|pdb|4A3E|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546346|pdb|4A3F|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546363|pdb|4A3J|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546380|pdb|4A3K|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546396|pdb|4A3L|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546413|pdb|4A3M|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977883|pdb|4A3G|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977898|pdb|4A3I|E Chain E, Rna Polymerase Ii Binary Complex With Dna
gi|380764983|pdb|4A93|E Chain E, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145450|pdb|4BBR|E Chain E, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145463|pdb|4BBS|E Chain E, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287822|emb|CAA37381.1| RNA polymerase RPB5 subunit [Saccharomyces cerevisiae]
gi|396754|emb|CAA50472.1| DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|536484|emb|CAA85113.1| RPB5 [Saccharomyces cerevisiae]
gi|151946543|gb|EDN64765.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae YJM789]
gi|190408693|gb|EDV11958.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|207347621|gb|EDZ73732.1| YBR154Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270199|gb|EEU05422.1| Rpb5p [Saccharomyces cerevisiae JAY291]
gi|285810484|tpg|DAA07269.1| TPA: Rpb5p [Saccharomyces cerevisiae S288c]
gi|323334603|gb|EGA75977.1| Rpb5p [Saccharomyces cerevisiae AWRI796]
gi|323338690|gb|EGA79906.1| Rpb5p [Saccharomyces cerevisiae Vin13]
gi|323356099|gb|EGA87904.1| Rpb5p [Saccharomyces cerevisiae VL3]
gi|349576528|dbj|GAA21699.1| K7_Rpb5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300997|gb|EIW12086.1| Rpb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS+ E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQL 175
>gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5 [Entamoeba histolytica HM-1:IMSS]
gi|56467420|gb|EAL45380.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044881|gb|EKE42883.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Entamoeba nuttalli P19]
gi|449705666|gb|EMD45670.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica KU27]
Length = 204
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 79/158 (50%), Gaps = 15/158 (9%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSNPSKKM 86
+ + +TVL+ML DRGY + +L F+ F G+ D + L + + ++ + +
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 87 LVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK-----------EVLK 135
+V + ++T + G Y + E + I++ + +++ ++ +L+
Sbjct: 68 IVFFAEGVSLKTDVL-GKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLE 126
Query: 136 FPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V + +HIL P+H +LS E+ +L+KKY+++ Q+
Sbjct: 127 DELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQL 164
>gi|156396586|ref|XP_001637474.1| predicted protein [Nematostella vectensis]
gi|156224586|gb|EDO45411.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 81/165 (49%), Gaps = 21/165 (12%)
Query: 26 SYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRS 80
+Y+++ R+TV+Q+ N + EL ++L +F+ FGD+ L + +
Sbjct: 7 TYKFWRIRKTVMQVCNG---LILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHND 63
Query: 81 NPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK- 139
+P+ +M V + ++ + I+ Y Q + +E + ++++Q M A++ ++ K
Sbjct: 64 DPTDQMFVFFPEEPKVGIKTIKQ-YCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKY 122
Query: 140 -----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ I H L P+H +++ E+ +L+ +YK++ Q+
Sbjct: 123 ILEQFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKLKEHQL 167
>gi|378756615|gb|EHY66639.1| hypothetical protein NERG_00279 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 22/164 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF------GDKCDLESLRLCLPLRSN 81
+ +L ++T+ QM+ RGY V ++ L F+ ++ G K SL + S
Sbjct: 9 KLWLCQKTIFQMMKCRGYTVSEVDMEMDLNAFKTSYPALINTGSK---HSLSMLFQHTSM 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFK 139
P K++ V + + + I+ LY L K+ +H I++ + + + K + + +
Sbjct: 66 PEKQLFVFFPDNAYFKAKDIK-LYTSTLGKQNIHNGIIVCKETLKAHSLKALDESRKDYD 124
Query: 140 VEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E+FY H PKH +L+ E+ ++K+ K+ Q+
Sbjct: 125 LELFYIKELLFNITKHKDVPKHVLLTDEEKKSVLKERKVGDAQL 168
>gi|326430754|gb|EGD76324.1| hypothetical protein PTSG_01026 [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 17/153 (11%)
Query: 38 QMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTE-EI 96
QM +DRGY V + + GDK E +P+ L+VY E ++
Sbjct: 18 QMCHDRGYLVTQDMMEMPYDRWEEMHGDKIRRELSYYVRKDSGDPTG--LLVYFPVEPDV 75
Query: 97 RTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLK---FPFKV--------EIF 143
T I+ L+ +I KE +I++ + + ARK EVLK F F+V +
Sbjct: 76 STVLIKSLHERI-TKENSKRVIIVYRGKLAGAARKAMEVLKDSGFVFEVFTEAELAINVT 134
Query: 144 YHILQPKHEVLSAGERDKLMKKYKIEGKQVTIL 176
H L PKH+VL+ E+ +L+ +Y I ++ I+
Sbjct: 135 RHRLVPKHDVLTEAEKQQLLDRYSITPDKLPIM 167
>gi|402467370|gb|EJW02677.1| hypothetical protein EDEG_02909 [Edhazardia aedis USNM 41457]
Length = 200
Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 31 LSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVY 90
L R TV++ML DRGY + + SL EF + + S L L S +++++ +
Sbjct: 10 LCRETVIEMLQDRGYISNRTTKSLSLQEFMHEYSNALQDRSTIKMLVLHSKTNEQLVCHF 69
Query: 91 LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF------- 143
++ +A++ IL+++ + ++L+ + ++ K V +F VE+F
Sbjct: 70 FDEAKVGLKALKLTIEGILSQK-IENVVLVCKEGLSPAGAKFVAEFK-NVEVFKEKELLF 127
Query: 144 ---YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H+L PKH +L E+ KL++ +I+ Q+
Sbjct: 128 NVTKHMLVPKHRILEYEEKCKLLECRRIKESQL 160
>gi|149034615|gb|EDL89352.1| rCG29511, isoform CRA_f [Rattus norvegicus]
Length = 175
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLR 79
E+YR + R+T++Q+ +DRGY V EL ++L EF+ FGDK L + +
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 80 SNPSKKMLVVYLG 92
+P+ +M V + G
Sbjct: 66 DDPTDQMFVFFPG 78
>gi|45190642|ref|NP_984896.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|54036391|sp|Q757H7.1|RPAB1_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|44983621|gb|AAS52720.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|374108119|gb|AEY97026.1| FAER036Wp [Ashbya gossypii FDAG1]
Length = 215
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
M+ R + + RTV +M+ DRGY + E+ SL +F+ + D R +
Sbjct: 1 MDQDNERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMG-RPQRKMMS 59
Query: 78 LRSNPSKKML---------------------------VVYLGTEEIRTQAIRGLYGQILN 110
+SNP+++ L V+++G + +T +Y +
Sbjct: 60 FQSNPTEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIF--IYQNGIT 117
Query: 111 KEALHGLILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEG 170
AL L + + + TF ++ V I +H L PKH LS E+ +L+K+Y+++
Sbjct: 118 PSALKLLPSVAPATIETFNETALV-----VNITHHELVPKHIKLSDEEKKELLKRYRLKE 172
Query: 171 KQV 173
Q+
Sbjct: 173 SQL 175
>gi|365766868|gb|EHN08357.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQL 175
>gi|167379694|ref|XP_001735242.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Entamoeba dispar SAW760]
gi|165902841|gb|EDR28561.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Entamoeba dispar SAW760]
Length = 204
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 79/158 (50%), Gaps = 15/158 (9%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF---GDKCDLESLRLCLPLRSNPSKKM 86
+ + +TVL+ML DRGY + +L F+ F G+ D + L + + ++ + +
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 87 LVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARK-----------EVLK 135
+V + ++T + G Y + E + I++ + +++ ++ +L+
Sbjct: 68 IVFFAEGVSLKTDVL-GKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLE 126
Query: 136 FPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V + +H+L P+H +LS E+ +L+KKY+++ Q+
Sbjct: 127 DELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQL 164
>gi|323349753|gb|EGA83968.1| Rpb5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 215
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKXFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSXDEKRELLKRYRLKESQL 175
>gi|401882166|gb|EJT46437.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406701349|gb|EKD04497.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 195
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 13/154 (8%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPL-RSNPSKKM 86
R + +TV +M+ DRGY V + E+ S +F+ T+G ++ R+ S S+
Sbjct: 11 RLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHSRDSRDR 70
Query: 87 LVVYLGTEEIRTQAIRGLYGQILNKE-ALHGLIL----------ILQSNMNTFARKEVLK 135
+ V+ EE ++A + L+ A GLI+ Q+ M + E K
Sbjct: 71 IYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEYHLEDFK 130
Query: 136 -FPFKVEIFYHILQPKHEVLSAGERDKLMKKYKI 168
V I H L PKH ++ E+ L+K+Y +
Sbjct: 131 EADLLVNITRHFLVPKHTIMEPEEKSALIKRYAM 164
>gi|290878169|emb|CBK39228.1| Rpb5p [Saccharomyces cerevisiae EC1118]
Length = 215
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + RTV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSNDEKRELLKRYRLKESQL 175
>gi|238878328|gb|EEQ41966.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
albicans WO-1]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 25/168 (14%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDL-ESLRLCLPLRSNPSKKM 86
R F S +TV +M+ DRGY + EL +L EFR D + ++C ++ P+ +
Sbjct: 10 RLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMC--FQATPTAET 67
Query: 87 L----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
L V + + + +R I K G I I Q++M A K +
Sbjct: 68 LEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPSANKLIPTV 126
Query: 137 -PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +EIF +H L PKH L+ E+ +L+ +Y+++ Q+
Sbjct: 127 SPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQL 174
>gi|344302236|gb|EGW32541.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 214
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F S +TV +M+ DRGY + E+ +L EFR D + +L + ++ P+ + L
Sbjct: 10 RLFRSFKTVKEMVRDRGYYITQEEIDMTLDEFRAKVCDSMGVPQRKL-MCFQAQPTGESL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K GL I Q+++ A K +
Sbjct: 69 EKFPDLGALWVEFCDEASVGIKTMRNFCIHITEKNFSTGL-FIYQNSITPSANKLIPTVS 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+++Y+++ Q+
Sbjct: 128 PASIETFQEGDLVVNITHHELVPKHIKLSKDEKKELLERYRLKESQL 174
>gi|401626842|gb|EJS44762.1| rpb5p [Saccharomyces arboricola H-6]
Length = 215
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + +TV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 TKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PASIETFNEAALVVNITHHELVPKHIRLSTDEKKELLKRYRLKESQL 175
>gi|241950235|ref|XP_002417840.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
gi|223641178|emb|CAX45555.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
Length = 214
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F S +TV +M+ DRGY + EL +L EFR D R + ++ P+ + L
Sbjct: 10 RLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQ-RKQMCFQATPTGETL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K G I I Q++M A K +
Sbjct: 69 EKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPSANKLIPTVS 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +EIF +H L PKH L+ E+ +L+ +Y+++ Q+
Sbjct: 128 PATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQL 174
>gi|387594524|gb|EIJ89548.1| hypothetical protein NEQG_00318 [Nematocida parisii ERTm3]
gi|387596634|gb|EIJ94255.1| hypothetical protein NEPG_00922 [Nematocida parisii ERTm1]
Length = 208
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 23/169 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF------GDKCDLESLRLCLPLRSN 81
+ +L ++T+ QM+ RGY V ++L L F+ ++ G K SL + +
Sbjct: 9 KLWLCQKTIFQMMKCRGYTVSEADLEMDLDLFKTSYPALINTGSK---HSLSMLFQHTTM 65
Query: 82 PSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKFPFK 139
P K++ V + + + I+ LY L K+ +H I++ + + + K + + +
Sbjct: 66 PEKQLFVFFPDNAYFKAKDIK-LYTSTLGKQNIHNGIIVCKETLKAHSLKALDESRKEYD 124
Query: 140 VEIFY----------HILQPKHEVLSAGERDKLMKKYKI-EGKQVTILV 177
+E+FY H PKH +L+ E+ ++K+ K+ E + ILV
Sbjct: 125 LELFYIRELLFNITKHKDVPKHILLTEEEKKNVLKERKVGEAQLKKILV 173
>gi|365761982|gb|EHN03600.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841351|gb|EJT43753.1| RPB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + +TV +M+ DRGY + E+ L +F+ + D R + ++NP+++
Sbjct: 11 RLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMG-RPQRKMMSFQANPTEESV 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 SKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFNEAALVVNITHHELVPKHIRLSTDEKRELLKRYRLKESQL 175
>gi|363753390|ref|XP_003646911.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890547|gb|AET40094.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
Length = 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 35/173 (20%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK--- 84
R + + RTV +M+ DRGY + E+ +L +F+ + D R + +SNP++
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLALDDFKAKYCDSMG-RPQRKMMSFQSNPTEESI 69
Query: 85 ------------------------KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILI 120
K V+++G + +T +Y + AL L +
Sbjct: 70 VKSPQMGSVWIEFCDEPSVGIKTMKNFVIHIGEKNFQTGIF--IYQNGITPSALKLLPSV 127
Query: 121 LQSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ + TF ++ V I +H L PKH LS E+ +L+K+Y+++ Q+
Sbjct: 128 APATIETFNEASLV-----VNITHHELVPKHIKLSDEEKRELLKRYRLKESQL 175
>gi|300120101|emb|CBK19655.2| DNA-directed RNA polymerase II [Blastocystis hominis]
Length = 215
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 34/182 (18%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLES----LR 73
M G + + + F R+TV +ML+ RGYA+ + + + +L F D CD E+ L+
Sbjct: 1 MNGAVNPSTTKLFRVRKTVFKMLSKRGYAISDKDQSMTLDTF---VKDYCDAETNPDLLK 57
Query: 74 LCLPLR--SNPSKKMLVVYLGT--EEIRTQAIRGLYGQILNKEALHGLILILQSNMN--- 126
L + R + +++V ++ + ++I + ++ ++E + +IL+ +
Sbjct: 58 LTIISRKTEDEDDRVVVFFIRSVDKKINGKDFESKIEKVSSEENVKRIILVFGGELTSEA 117
Query: 127 ---------------TFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGK 171
+F E++ V+I H L P+H++L E+ L+K+Y +E +
Sbjct: 118 KKKANSASKKNLIVESFQEDELV-----VDITEHELVPEHQLLKPQEKADLLKQYGLEER 172
Query: 172 QV 173
Q+
Sbjct: 173 QL 174
>gi|19114099|ref|NP_593187.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe 972h-]
gi|2500628|sp|Q09191.1|RPAB1_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPC24B
gi|256599719|pdb|3H0G|E Chain E, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599731|pdb|3H0G|Q Chain Q, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|1345439|dbj|BAA07843.1| RNA polymerase II 5th largest subunit [Schizosaccharomyces pombe]
gi|2465157|emb|CAB16886.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe]
gi|2708526|gb|AAB92515.1| Rpb5 [Schizosaccharomyces pombe]
Length = 210
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 27/167 (16%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFT---FGDKCDLESLRLCLPLRSNPSK 84
R F + +T Q+++DRGY V +EL +L +F+ G D +L ++ +K
Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNK 69
Query: 85 KMLVV------YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP- 137
+ + +G +E+RT + L ILI ++M A K +
Sbjct: 70 GTIYIEFAKEPSVGIKEMRT------FVHTLGDHNHKTGILIYANSMTPSAAKIIATVTG 123
Query: 138 -FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F +E F +H L PKH +LS E+ +L+ +YK+ Q+
Sbjct: 124 QFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQL 170
>gi|451853318|gb|EMD66612.1| hypothetical protein COCSADRAFT_35119 [Cochliobolus sativus ND90Pr]
Length = 234
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 49/189 (25%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RT +M+NDRGY V ++T SL EF + + D E R L PS++ML
Sbjct: 12 RLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYA-REDGEPDRSRLNFSCQPSEEML 70
Query: 88 VVY--------------LGT--------EEIRTQAIRGLYGQILNKEALHGLILILQS-- 123
Y +GT E + + +R ++N G+++ +++
Sbjct: 71 AKYTDAPTKKNPNPTPSIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVKAMT 130
Query: 124 -------------------NMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMK 164
+ F +++L V I H L PKH +LS E+ +L++
Sbjct: 131 GMAIRLLRGATSITDGPKGGVEVFVEQDLL-----VNITKHELVPKHVLLSDQEKQQLLQ 185
Query: 165 KYKIEGKQV 173
+Y+++ Q+
Sbjct: 186 RYRLKQTQL 194
>gi|254578454|ref|XP_002495213.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
gi|238938103|emb|CAR26280.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
Length = 215
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKK-- 85
R + + +TV +M+ DRGY + E+ L +F+ + D R + +SNP+++
Sbjct: 11 RLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMG-RPQRKMMSFQSNPTEESI 69
Query: 86 --------MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP 137
+ V + + + ++ I K G I + Q+N+ A K V P
Sbjct: 70 AKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTG-IFVYQNNVTPSAMKLVPSIP 128
Query: 138 -----------FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L PKH S E+ +L+K+Y+++ Q+
Sbjct: 129 PATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQL 175
>gi|406605852|emb|CCH42738.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 215
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + RTV +M DRGY + E+T +L EFR + D +L + +++P+ + L
Sbjct: 11 RLWRAFRTVKEMALDRGYFIATEEITMNLEEFRSKYCDAMGRPQRKL-MSFQASPTSESL 69
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + ++ I K G I I Q+ + A K +
Sbjct: 70 GQFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFSVG-IFIYQNGITPSANKLIPTVA 128
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH VLS E+ +L+++Y+++ Q+
Sbjct: 129 PAVIETFQESDLIVNITHHELVPKHIVLSDDEKKELLERYRLKESQL 175
>gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R FL +RT++QML DRGY + SE+T +L EF +GD L L +
Sbjct: 7 EIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLRKMMTMI 66
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY 144
+ ++V + QA+ L A++ + ++ F KE++ V +
Sbjct: 67 RAILVVQDIKAFSRQALVFL-------GAVYPIF-----HIEVFQEKELI-----VNVKE 109
Query: 145 HILQPKHEVLSAGERDKLMKK 165
H+ P+H+ L+ E+ K +++
Sbjct: 110 HVFVPEHQALTTEEKQKFLER 130
>gi|154292350|ref|XP_001546750.1| hypothetical protein BC1G_14664 [Botryotinia fuckeliana B05.10]
Length = 242
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 47/194 (24%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRS 80
G E+ + + RTV +M+ DRGY + E+ S F+ F D R + +
Sbjct: 14 GIDREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSN-DGSVDRRQMNFSA 72
Query: 81 NPSKKMLVVYL----------GTEEIRTQAIRGL--------------YGQILNKEALHG 116
PS+ M+ Y T EI T I L + Q L++
Sbjct: 73 TPSEAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSA 132
Query: 117 LILIL-----------------QSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGER 159
ILI ++ + TF +++L V I +H L PKH +LS ER
Sbjct: 133 GILIAPVAPSGPAQKIIPAVASETRIETFVEQDLL-----VNITHHELVPKHVLLSREER 187
Query: 160 DKLMKKYKIEGKQV 173
KL+ +Y+++ Q+
Sbjct: 188 AKLLSRYRLKDTQL 201
>gi|452004738|gb|EMD97194.1| hypothetical protein COCHEDRAFT_1163800 [Cochliobolus
heterostrophus C5]
Length = 234
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 49/189 (25%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RT +M+NDRGY V ++T SL EF + + D E R L PS++M+
Sbjct: 12 RLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYA-REDGEPDRSRLNFSCQPSEEMI 70
Query: 88 VVY--------------LGT--------EEIRTQAIRGLYGQILNKEALHGLILILQS-- 123
Y +GT E + + +R ++N G+++ +++
Sbjct: 71 AKYTDAPTKKNPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVKAMT 130
Query: 124 -------------------NMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMK 164
+ F +++L V I H L PKH +LS E+ +L++
Sbjct: 131 GMAIRLLRGATSITDGPKGGVEVFVEQDLL-----VNITKHELVPKHVLLSDQEKQQLLQ 185
Query: 165 KYKIEGKQV 173
+Y+++ Q+
Sbjct: 186 RYRLKQTQL 194
>gi|302894285|ref|XP_003046023.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726950|gb|EEU40310.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 234
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 36/199 (18%)
Query: 15 SHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRL 74
HV S E R + + RTV +M+ DR Y + E+ SL FR + + D R
Sbjct: 4 DHVPTDARSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNP-DGSINRA 62
Query: 75 CLPLRSNPSKKML----------------------VVYLGTEEIRTQAIRGLYGQILNKE 112
L + PS+ ML V +L + IR ++
Sbjct: 63 KLQFSARPSESMLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNH 122
Query: 113 ALHGLILILQSNMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERD 160
G I++ ++ ARK + L+ V I +H L PKH +LS E+
Sbjct: 123 YKTG-IMVTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKT 181
Query: 161 KLMKKYKIEGKQVTILVKQ 179
L+K+Y+++ Q+ ++++
Sbjct: 182 ALLKRYRLKETQLPRILQR 200
>gi|255728687|ref|XP_002549269.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240133585|gb|EER33141.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 214
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 25/168 (14%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC-DLESLRLCLPLRSNPSKKM 86
R F + +TV +M+ DRGY + E+ +L EFR D + + ++C ++ P+ +
Sbjct: 10 RLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMC--FQAQPTGET 67
Query: 87 L----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
L V + + + +R I K GL I Q+++ A K +
Sbjct: 68 LEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGL-FIYQNSITPSANKLIPTV 126
Query: 137 -PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +EIF +H L PKH LS E+ +L+++Y+++ Q+
Sbjct: 127 SPSVIEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQL 174
>gi|167516220|ref|XP_001742451.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779075|gb|EDQ92689.1| predicted protein [Monosiga brevicollis MX1]
Length = 210
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR--SNP 82
E YR + T+ QM +DRG+ V + + + +G+ E L P++ +
Sbjct: 6 ERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGEYPRKE---LSFPVQKVDDD 62
Query: 83 SKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV---LK--FP 137
+ + V + + +++ AI+ LY + L + L I++ Q + A+ + LK P
Sbjct: 63 NDGLFVFFPESPDVKVAAIKSLYDR-LKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPP 121
Query: 138 FKVEIFY----------HILQPKHEVLSAGERDKLMKKY 166
+ VE F H L P HE+L E+ +L+++Y
Sbjct: 122 YIVETFAEAELVYNVTRHHLVPHHEILKESEKQQLLERY 160
>gi|195164197|ref|XP_002022935.1| GL16452 [Drosophila persimilis]
gi|194104997|gb|EDW27040.1| GL16452 [Drosophila persimilis]
Length = 126
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 19 EGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE-----SLR 73
E E Y+ + R+TV +M +DRGY V EL +++ +F FGDK + L
Sbjct: 4 EMNDEAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLT 63
Query: 74 LCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQI 108
+ L +P +MLV + ++ + I+ ++
Sbjct: 64 MVLTHADDPKNRMLVFFPEEPKVAVRTIKAFANRM 98
>gi|300701817|ref|XP_002995033.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
gi|239603668|gb|EEQ81362.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
Length = 204
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
++FL R T+++M +RGY L+ +F DK D+ S+ N +
Sbjct: 7 KFFLCRNTLVEMCTERGYTTDQKVLSYDNFIAQFPSCDK-DVNSINFVC---KNADNLVG 62
Query: 88 VVYLGTEEIRTQAIRGL---YGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF- 143
+ ++ E+I +I + Y I ++ LIL++ M++ ++ V K+EIF
Sbjct: 63 IHFIDDEKIGKSSIEKVIETYKSI----NIYHLILVINQKMSSASQNIVNVSDLKIEIFK 118
Query: 144 ---------YHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179
H+ P+H +L+ E++ +++K KI Q+ ++K+
Sbjct: 119 DEELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKILKR 163
>gi|156061727|ref|XP_001596786.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980]
gi|154700410|gb|EDO00149.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 242
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 47/194 (24%)
Query: 21 GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRS 80
G E+ + + RTV +M+ DRGY + E+ S F+ F D R + +
Sbjct: 14 GIDREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSN-DGSVDRRQMNFSA 72
Query: 81 NPSKKMLVVYLG----------TEEIRTQAIRGL--------------YGQILNKEALHG 116
PS+ M+ Y T EI T + L + Q L++
Sbjct: 73 TPSEAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSA 132
Query: 117 LILIL-----------------QSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGER 159
ILI + + TF +++L V I +H L PKH +LS ER
Sbjct: 133 GILIAPVPPSGPAQKIIPAVASDTRIETFVEQDLL-----VNITHHELVPKHVLLSKEER 187
Query: 160 DKLMKKYKIEGKQV 173
KL+ +Y+++ Q+
Sbjct: 188 AKLLSRYRLKDTQL 201
>gi|408398400|gb|EKJ77531.1| hypothetical protein FPSE_02281 [Fusarium pseudograminearum CS3096]
Length = 234
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 34/198 (17%)
Query: 15 SHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR-------------- 60
HV S E R + + RTV +M+ DR Y + E+ SL FR
Sbjct: 4 DHVPTDAKSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSINRNK 63
Query: 61 FTFGDKCDLESLRLCLP--LRSNPSK-----KMLVVYLGTEEIRTQAIRGLYGQILNKEA 113
+F + +R P +NP + + +L + IR +++
Sbjct: 64 LSFSARPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVNQIRAFASYVISNNY 123
Query: 114 LHGLILILQSNMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERDK 161
G I+I ++ AR+ + L+ V I +H L PKH +LS E+
Sbjct: 124 KTG-IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIA 182
Query: 162 LMKKYKIEGKQVTILVKQ 179
L+K+Y+++ Q+ ++++
Sbjct: 183 LLKRYRLKETQLPRILQK 200
>gi|297796715|ref|XP_002866242.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
gi|297312077|gb|EFH42501.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
Length = 213
Score = 44.7 bits (104), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFG------DKCDLESLRLCLPL 78
E R F RRTVLQML DRGY + S+L EF F +K + E+L +
Sbjct: 7 EITRLFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKPMNNMNKVNKEALFVAANK 66
Query: 79 RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV--LKF 136
NP+ K+ V Y ++ I+ + + + I+++ + AR + L
Sbjct: 67 GPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVPRGIVVVPMPITGPARMAISELNK 126
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+E+F H L K+ VL + +L+K Y ++ Q+
Sbjct: 127 ILTIEVFEEAELVTNITEHKLINKYYVLDDQAKKELLKTYTVQDTQL 173
>gi|310792261|gb|EFQ27788.1| RNA polymerase Rpb5 domain-containing protein [Glomerella
graminicola M1.001]
Length = 230
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 36/189 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + + RT +M DRGY + ELT SL F+ + D R L +NPS
Sbjct: 10 EVTRLWRAWRTAHEMAADRGYELAEDELTISLDRFKMEYTS-ADGSVNRNKLQFSANPSA 68
Query: 85 KML----------------------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQ 122
+M+ V +L + I+ +++ + G I+I
Sbjct: 69 EMIRKFTPPATPQNPNPAPECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSG-IMITH 127
Query: 123 SNMNTFARKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEG 170
++ ARK ++ KVE F H L PKH +LS E+ L+K+Y+++
Sbjct: 128 VALSPAARKMLITIESFAKVECFLEEDLLVNITKHELVPKHILLSREEKIALLKRYRLKE 187
Query: 171 KQVTILVKQ 179
Q+ ++++
Sbjct: 188 TQLPRILQK 196
>gi|46136465|ref|XP_389924.1| hypothetical protein FG09748.1 [Gibberella zeae PH-1]
Length = 253
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 38/202 (18%)
Query: 15 SHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD---KCDLES 71
HV S E R + + RTV +M+ DR Y + E+ SL FR + + ++
Sbjct: 4 DHVPTDAKSKEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININY 63
Query: 72 LRLCLPLRSNPSKKML----------------------VVYLGTEEIRTQAIRGLYGQIL 109
R L + PS M+ + +L + IR ++
Sbjct: 64 SRNKLSFSARPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVI 123
Query: 110 NKEALHGLILILQSNMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAG 157
+ G I+I ++ AR+ + L+ V I +H L PKH +LS
Sbjct: 124 SNNYKTG-IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRE 182
Query: 158 ERDKLMKKYKIEGKQVTILVKQ 179
E+ L+K+Y+++ Q+ ++++
Sbjct: 183 EKIALLKRYRLKETQLPRILQK 204
>gi|354545760|emb|CCE42488.1| hypothetical protein CPAR2_201310 [Candida parapsilosis]
Length = 214
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 27/169 (15%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDL--ESLRLCLPLRSNPSKK 85
R F + +TV +M+ DRGY + EL +L +FR C+ E R + ++ P+ +
Sbjct: 10 RLFRTYKTVKEMVKDRGYYISQEELDMTLEQFR---AKVCNTMGEPQRKLMCFQATPTAE 66
Query: 86 ML----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
L V + + + +R I K G I I Q+ + A K +
Sbjct: 67 QLDKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVG-IFIYQNGITPSANKLIPT 125
Query: 136 F-PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+++Y+++ Q+
Sbjct: 126 VQPATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQL 174
>gi|452981679|gb|EME81439.1| hypothetical protein MYCFIDRAFT_70882 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 35/189 (18%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLP 77
M S E R + RT QM +DRGY + + E SL EFR + D+ S R+ +
Sbjct: 1 MSDENSRELSRLWRVLRTTKQMCSDRGYELTDEECNISLEEFRQQYADESGAPS-RVKMA 59
Query: 78 LRSNPSKKMLVVY--------------LGT--------EEIRTQAIRGLYGQILNKEALH 115
+ PS M+ Y +GT I + ++ + +K
Sbjct: 60 FTARPSDAMIKKYTPIQRPGQDEKPPEIGTIHVEFSNDASIGIKQLKQFASNLADKNYYT 119
Query: 116 GLILILQSNMNTFARKEVLKF-PFKVEIF----------YHILQPKHEVLSAGERDKLMK 164
G I + Q + A K + P +EIF H L PKH +LS E+ L++
Sbjct: 120 G-IYVSQVQPTSAALKIIPSVHPLIMEIFKEDDLLVNISRHELVPKHILLSQEEKRGLLE 178
Query: 165 KYKIEGKQV 173
+Y+++ Q+
Sbjct: 179 RYRLKETQL 187
>gi|402084014|gb|EJT79032.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 233
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 45/189 (23%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD---KCDLESLRLCLPLRSN 81
E+ R + + RT +ML DRGY + E+ SL F + D D L+ ++
Sbjct: 10 EARRLWRAWRTAHEMLQDRGYELSQEEVNISLDRFLQQYTDGAGNVDASKLKFS----AH 65
Query: 82 PSKKML----------------------VVYLGTEEIRT---QAIRGLYGQILNKEALHG 116
PS+ M+ V ++G ++ QAIR + Q + H
Sbjct: 66 PSEAMIKKHTPPPTEQRPDPVPECGTVWVEFMGDASDKSLGIQAIRS-FIQYTVEHNFHT 124
Query: 117 LILILQSNMNTFARK---------EVLKFPFK---VEIFYHILQPKHEVLSAGERDKLMK 164
I+I +S +++ +RK + F V I +H L PKH +LS E+ L++
Sbjct: 125 GIMITKSPISSGSRKLIGASANYATIEAFMLDDMLVNITHHELVPKHVLLSKIEKAALLE 184
Query: 165 KYKIEGKQV 173
+Y+++ Q+
Sbjct: 185 RYRLKETQL 193
>gi|429965029|gb|ELA47026.1| hypothetical protein VCUG_01471 [Vavraia culicis 'floridensis']
Length = 223
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC--DLESLRLCLPLRSNPSKKML 87
+L R+T+L+ML+DRGY + ++ + EF + C D +LR+ + K+ML
Sbjct: 34 YLVRKTMLEMLSDRGYPIKEYQM-KDYDEFVNKYPS-CVKDTSNLRIIV----QKDKEML 87
Query: 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIF 143
V+ EE + + + + K+ + LI++L+ ++ A K L+ P + IF
Sbjct: 88 FVFFSDEEKMSLKNVKILVENIEKQNIKNLIVVLREGISPAASKFALECPVNITIF 143
>gi|380800089|gb|AFE71920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Macaca mulatta]
Length = 181
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 49 NSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRG 103
EL ++L EF+ FGDK L + + +P+ +M V + ++ + I+
Sbjct: 1 QDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIK- 59
Query: 104 LYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK------------VEIFYHILQPKH 151
+Y Q + +E + ++++Q M A++ ++ K + I H L P+H
Sbjct: 60 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 119
Query: 152 EVLSAGERDKLMKKYKIEGKQV 173
V++ E +L+ +YK+ Q+
Sbjct: 120 VVMTKEEVTELLARYKLRENQL 141
>gi|389749829|gb|EIM91000.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 175
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 18 MEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKC---DLESLRL 74
M E+ + RT+ +++ DRGY V + E+ L+ F + + D L
Sbjct: 1 MSSSDDSEAATLWKVNRTIQELVKDRGYQVADDEIHMDLSTFESHYANSAGSVDRNQLNF 60
Query: 75 CLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
LR NP ++ ++IR+ I ++ I+ A + FA ++L
Sbjct: 61 FTNLRVNPQ-----IF---KDIRSGVI--IFPGIMTPSA---------RKVEEFAEADLL 101
Query: 135 KFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
V I +H L P+H+VL+ E+ ++++Y ++ Q+
Sbjct: 102 -----VYITHHKLVPRHDVLTPEEKKMVLERYHLKETQL 135
>gi|397611881|gb|EJK61509.1| hypothetical protein THAOC_17988 [Thalassiosira oceanica]
Length = 581
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-- 137
+ + ++ V + E++ + I+ L + + E + IL+L+ N+ FA++ V +
Sbjct: 437 DDDTNQLFVFFPEDEKVGVKPIKILTDR-MKDEQVTNAILVLRGNITPFAKQAVAEMSDT 495
Query: 138 FKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F++E F H L P+H+VLS E+ +L+++Y++ Q+
Sbjct: 496 FRIEHFKEAELLVDITEHTLVPEHQVLSQNEKQELLRRYRLRETQL 541
>gi|389628590|ref|XP_003711948.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351644280|gb|EHA52141.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
Length = 230
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 45/185 (24%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKM 86
+ + + RT+ QML+DRGY + E S+ F F D +++ +L R PS M
Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSAR--PSDAM 69
Query: 87 L----------------------VVYLGTEEI---RTQAIRGLYGQILNKEALHGLILIL 121
L V ++ E+I RT+ + ++L + IL+
Sbjct: 70 LKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQ----FVEVLLQSGFRDGILVT 125
Query: 122 QSNMNTFARK----------EVLKFPFK---VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
Q +++ AR+ +V F + V I +H L PKH +LS E+ L+++Y++
Sbjct: 126 QGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRL 185
Query: 169 EGKQV 173
+ Q+
Sbjct: 186 KETQL 190
>gi|340386044|ref|XP_003391518.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 88
Score = 43.1 bits (100), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 26 SYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRS 80
+YR + R+TV+QM +DR Y V EL ++L +F+ FG++ + L + +
Sbjct: 7 TYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSILVAHND 66
Query: 81 NPSKKMLVVYLGTEEIRTQAIR 102
+P+ +M V + ++ + I+
Sbjct: 67 DPTDQMFVFFPEDPKVGIKTIK 88
>gi|448525471|ref|XP_003869121.1| Rpb5 protein [Candida orthopsilosis Co 90-125]
gi|380353474|emb|CCG22984.1| Rpb5 protein [Candida orthopsilosis]
Length = 214
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R F + +TV +M+ DRGY + EL +L +FR + E R + ++ P+ + L
Sbjct: 10 RLFRTYKTVKEMVKDRGYYISQEELEMTLEQFRSKVCNSMG-EPQRKLMCFQATPNAEQL 68
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + +R I K G I I Q+ + A K +
Sbjct: 69 EKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVG-IFIYQNGITPSANKLIPTVQ 127
Query: 137 PFKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F +H L PKH LS E+ +L+++Y+++ Q+
Sbjct: 128 PATIETFQENDLIVNITHHELVPKHIKLSRDEKKELLERYRLKESQL 174
>gi|440470981|gb|ELQ40020.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440484880|gb|ELQ64891.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 259
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 45/185 (24%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKM 86
+ + + RT+ QML+DRGY + E S+ F F D +++ +L R PS M
Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSAR--PSDAM 69
Query: 87 L----------------------VVYLGTEEI---RTQAIRGLYGQILNKEALHGLILIL 121
L V ++ E+I RT+ + ++L + IL+
Sbjct: 70 LKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQ----FVEVLLQSGFRDGILVT 125
Query: 122 QSNMNTFARK----------EVLKFPFK---VEIFYHILQPKHEVLSAGERDKLMKKYKI 168
Q +++ AR+ +V F + V I +H L PKH +LS E+ L+++Y++
Sbjct: 126 QGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRL 185
Query: 169 EGKQV 173
+ Q+
Sbjct: 186 KETQL 190
>gi|255718861|ref|XP_002555711.1| KLTH0G15598p [Lachancea thermotolerans]
gi|238937095|emb|CAR25274.1| KLTH0G15598p [Lachancea thermotolerans CBS 6340]
Length = 215
Score = 42.4 bits (98), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 23/167 (13%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + + +TV +M+ DRGY + E+ SL +F+ + D R + +SNP ++ L
Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMG-RPQRKMMSFQSNPVEEAL 69
Query: 88 ----------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF- 136
V + + + ++ I K G I + Q+ + A K +
Sbjct: 70 EKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTG-IFVYQNGVTPSAMKLLPSVA 128
Query: 137 PFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P +E F+ H L PKH LS E+ +L+++Y+++ Q+
Sbjct: 129 PATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQL 175
>gi|342884561|gb|EGU84768.1| hypothetical protein FOXB_04663 [Fusarium oxysporum Fo5176]
Length = 236
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 38/201 (18%)
Query: 15 SHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRL 74
HV S E R + + RT+ +M+ DR Y + E+ SL FR + + D R
Sbjct: 4 DHVPTDARSKEVVRLWRAWRTIHEMVADREYELAEEEVKISLDRFRDEYCNP-DGSINRA 62
Query: 75 CLPLRSNPSKKML------------------------VVYLGTEEIRTQAIRGLYGQILN 110
L + PS+ M+ V +L + IR ++
Sbjct: 63 KLQFSARPSENMIRKNTPPVTAANPNPNPGADCGPVWVEFLADKTFGVNQIRQFAKYVIT 122
Query: 111 KEALHGLILILQSNMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGE 158
G I++ ++ ARK + L+ V I +H L PKH +LS E
Sbjct: 123 NNYKTG-IMVTHVPLSPAARKTLQSVESVAKIECFLEDDLLVNITHHELVPKHVLLSREE 181
Query: 159 RDKLMKKYKIEGKQVTILVKQ 179
+ L+K+Y+++ Q+ ++++
Sbjct: 182 KLALLKRYRLKETQLPRILQK 202
>gi|149595717|ref|XP_001520959.1| PREDICTED: hypothetical protein LOC100092316, partial
[Ornithorhynchus anatinus]
Length = 157
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 31 LSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD-----LESLRLCLPLRSNPSKK 85
LSR Q+ +DRGY V EL ++L EF+ FGDK L + + +P+ +
Sbjct: 44 LSRNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQ 103
Query: 86 MLVVYLG 92
M V + G
Sbjct: 104 MFVFFPG 110
>gi|66802850|ref|XP_635268.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|60463617|gb|EAL61802.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 181
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 39 MLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRT 98
ML+DR Y + E F E+L + + +P+ + V + T ++
Sbjct: 1 MLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53
Query: 99 QAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFK--------------VEIFY 144
I+ Y I+ + I+++Q N+ FA++ + +F + V I +
Sbjct: 54 TQIKK-YVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITH 112
Query: 145 HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
H L PKH +L+ E+ +L+ +YK++ Q+
Sbjct: 113 HQLVPKHILLTKEEKLELLTRYKMKESQL 141
>gi|406699193|gb|EKD02404.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 211
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPL-RSNPSKKM 86
R + +TV +M+ DRGY V + E+ S +F+ T+G ++ R+ S S+
Sbjct: 11 RLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHSRDSRDR 70
Query: 87 LVVYLGTEEIRTQAIRGLYGQILNK-EALHGLIL----------ILQSNMNTFARKEVLK 135
+ V+ EE ++A + L+ A GLI+ Q+ M + E K
Sbjct: 71 IYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEYHLEDFK 130
Query: 136 -FPFKVEIFYHILQPKHEVL 154
V I H L PKH ++
Sbjct: 131 EADLLVNITRHFLVPKHTIM 150
>gi|340057896|emb|CCC52248.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma vivax
Y486]
Length = 308
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 47/189 (24%)
Query: 18 MEGGGSLESY----------RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-- 65
M+GG S ESY R F RTV +M+ DR Y + + + S+ +FR + D
Sbjct: 86 MDGGMSGESYAIGQEALVFDRMFRVMRTVGEMMRDRKYNIACNVIPESVEQFREWYTDQH 145
Query: 66 -------KCDLESLRLCLPLRSNPSKKMLVVY---LGTEEIRTQAIRGLYGQILNKEALH 115
+ + R+C P RS + +V + LG E ++ Y N +
Sbjct: 146 SNAILRERMTVPCERVCGPQRS----RAMVFFSQGLGMEAVKQ------YIMTANSDNCD 195
Query: 116 GLILILQSNMNTFARKEV-----LKFPFKVEIF----------YHILQPKHEVLSAGERD 160
LI++ +N ++ V K+++F +H L PKH L E
Sbjct: 196 RLIIVTSGKVNATVKRHVDDVNRTGVALKIQLFDEDDLVVNITHHELVPKHTQLEEEEEK 255
Query: 161 KLMKKYKIE 169
++++ + +E
Sbjct: 256 EMLQSHSLE 264
>gi|169600143|ref|XP_001793494.1| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
gi|160705387|gb|EAT89631.2| hypothetical protein SNOG_02900 [Phaeosphaeria nodorum SN15]
Length = 277
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 49/189 (25%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R + RT +M+ +RGY V + E+T SL F + + D E R L S PS++ML
Sbjct: 55 RMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYA-REDGEPDRSRLNFSSTPSEEML 113
Query: 88 VVYLG----TEEIRTQAIRGLYGQILNKEAL------------------HGLILILQ--- 122
+ Y E AI ++ + EA+ G+++ ++
Sbjct: 114 IKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVTVKPIT 173
Query: 123 ----------SNMN--------TFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMK 164
SN++ F +++L V I H L PKH +LSA E+ +L+
Sbjct: 174 GMAIRLLRGASNLSDGPKGGIEVFVEQDLL-----VNITKHELVPKHVLLSAEEKAQLLT 228
Query: 165 KYKIEGKQV 173
+Y+++ Q+
Sbjct: 229 RYRLKETQL 237
>gi|413952169|gb|AFW84818.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 134
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKM 86
R + RRTV+QML DRGY V + EL S +F FG+ E L + +++PS ++
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQV 72
>gi|380474201|emb|CCF45905.1| RNA polymerase Rpb5, partial [Colletotrichum higginsianum]
Length = 219
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 25 ESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK 84
E R + + RT +M DRGY + EL SL F+ + D R L +NPS
Sbjct: 10 EVTRLWRAWRTAHEMAADRGYELAEDELKISLDRFKMEYT-AADGSVNRGKLQFSANPSA 68
Query: 85 KML----------------------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQ 122
M+ V +L + I+ +++ + G I++
Sbjct: 69 DMIRKYTPPPTSQNPNPTPDCGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSG-IMVTH 127
Query: 123 SNMNTFARKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEG 170
++ ARK ++ KVE F H L PKH +LS E+ L+K+Y+++
Sbjct: 128 VPLSPAARKMLITXESFXKVECFLEEDLLVNITQHELVPKHILLSREEKVALLKRYRLKE 187
Query: 171 KQVTILVK 178
Q+ +++
Sbjct: 188 TQLXXILQ 195
>gi|400596436|gb|EJP64210.1| RNA polymerase Rpb5 domain-containing protein [Beauveria bassiana
ARSEF 2860]
Length = 232
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 37/195 (18%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLR 79
S E R + + +TV +M+ DR Y + E+ SL FR F + D R L
Sbjct: 7 DARSKEVVRLWRAWKTVHEMVADRDYELAQDEINISLDRFRSEFCNP-DGTVNRAKLQFS 65
Query: 80 SNPSKKML----------------------VVYLGTEEIRTQAIRGLYGQILNKEALHGL 117
+ PS ML V +L ++ IR + G
Sbjct: 66 ARPSDAMLRKHTPPATDANPDPVPDCGPIWVEFLADKQFGVAQIRQFAKYTITNNYKTG- 124
Query: 118 ILILQSNMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKK 165
I++ ++ ARK + L+ V I +H L P+H +LS E+ L+++
Sbjct: 125 IMVTHVALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKVALLRR 184
Query: 166 YKIEGKQVT-ILVKQ 179
Y+++ Q+ IL K
Sbjct: 185 YRLKETQLPRILAKD 199
>gi|401827017|ref|XP_003887601.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
gi|392998607|gb|AFM98620.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
Length = 200
Score = 40.0 bits (92), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 24/153 (15%)
Query: 31 LSRRTVLQMLNDRGYAVPNSELTRSLTEFR----FTFGDKCDLESLRLCLPLRSNPSKKM 86
LSR T ++M+ DRGY ++ + L FR F + L +C+ + +
Sbjct: 10 LSRNTTIEMVKDRGYT--TTQEVQPLESFREKYPFALTKRSSLNF--VCVDV-----DRP 60
Query: 87 LVVYLGTEE-IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY- 144
+ ++ G +E + ++ GL Q H ++++ Q L F VEIF
Sbjct: 61 VAIHFGDDEKMGKKSFEGLLSQYEKDNIFHLILILPQMPSPAVMSMIALNAKFNVEIFLV 120
Query: 145 ---------HILQPKHEVLSAGERDKLMKKYKI 168
H P H +LS ER+ + K K+
Sbjct: 121 EEMMFNKTKHSWVPPHRILSREERENVFKSLKL 153
>gi|358393858|gb|EHK43259.1| hypothetical protein TRIATDRAFT_301149 [Trichoderma atroviride IMI
206040]
Length = 233
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 34/193 (17%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR--------------FTFGD 65
S E R + + RTV +M+ DR Y + E++ SL FR F
Sbjct: 8 DAKSKEVVRLWRAWRTVHEMVADREYELAEDEVSISLERFRDEYCHPDGSVNRAKLQFSA 67
Query: 66 KCDLESLRLCLP--LRSNPSK-----KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLI 118
+ LR P SNP + V +L ++ IR + G I
Sbjct: 68 RPSDSMLRKNTPPATASNPDPVPDCGPIWVEFLTDKQFGVSQIRNFAKYTITNNYKTG-I 126
Query: 119 LILQSNMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKY 166
++ ++ ARK + L+ V I +H L P+H +LS E+ L+K+Y
Sbjct: 127 MVTPVALSPAARKSLASVENLAKIECFLEDDLLVNITHHELVPRHVLLSREEKIALLKRY 186
Query: 167 KIEGKQVTILVKQ 179
+++ Q+ ++++
Sbjct: 187 RLKETQLPRILQK 199
>gi|194693176|gb|ACF80672.1| unknown [Zea mays]
Length = 127
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 105 YGQILNKEALHGLILILQSNMNTFARKEVLKFPFKV--EIFY----------HILQPKHE 152
Y +++ E + +L+LQ N+ FA+ +++ K+ EIF H+L P+H+
Sbjct: 7 YVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQ 66
Query: 153 VLSAGERDKLMKKYKIEGKQV 173
VL+ E+ L+++Y ++ Q+
Sbjct: 67 VLTNEEKKTLLERYTLKETQL 87
>gi|294880824|ref|XP_002769160.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239872330|gb|EER01878.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 168
Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 60/113 (53%), Gaps = 24/113 (21%)
Query: 79 RSNPSKKMLVVY------LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKE 132
+ +PS +++V + +G + IRT A++ + ++ L IL++Q + FA+
Sbjct: 33 QDDPSDQLIVFFPDENKRVGVKPIRTLALK------MEEQRLSRAILVVQQPLTAFAKTA 86
Query: 133 VLKFP--FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ + ++E+F +H L P+H+ L+A E+ L+++YK++ Q+
Sbjct: 87 IQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQL 139
>gi|105923251|gb|ABF81466.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
Length = 1432
Score = 38.9 bits (89), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVT 174
V I H+LQPK E L A ++ +L+ KYK+E KQ+T
Sbjct: 19 VSITKHVLQPKLERLPAEQKQQLVDKYKMEDKQMT 53
>gi|429961418|gb|ELA40963.1| hypothetical protein VICG_01993 [Vittaforma corneae ATCC 50505]
Length = 206
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 30 FLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVV 89
+L+R T+++MLN+RGY+ N L + +F + E+ L + + V
Sbjct: 14 WLARNTIIEMLNERGYSSSNMPLDYASFVSQFP-----NAENNPSTLNFVCSKDQPFAVH 68
Query: 90 YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY----- 144
+ +++ +++ L + + + +ILI + +N + + +E F
Sbjct: 69 FTSEDKLSKKSLETLTNEYA-AQGIANVILITSAKLNPACKVLMKSIKLNLEHFLVEELQ 127
Query: 145 -----HILQPKHEVLSAGERDKLMKKYKIE 169
H L PKH ++S E+ +L+ K K E
Sbjct: 128 FNITKHHLVPKHRIMSESEQKELLNKLKCE 157
>gi|168036467|ref|XP_001770728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677946|gb|EDQ64410.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 14 SSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLR 73
+ HV++ +S + R+ VL+M+ D Y V ++ELT + +F + + E L
Sbjct: 2 AEHVLDR----QSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLM 57
Query: 74 LCLPLRSNPSKKMLVV----YLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFA 129
+ P SN ++ +G + I+T R + +E + + ++Q ++ +
Sbjct: 58 ILKPKSSNNAEHGPKTGGKGRVGLKTIKTCKKR------MKRENVPRAVFVVQQHITPLS 111
Query: 130 RK-----------EVLKFP-FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILV 177
++ EV P F V I L P HE+L+ E++ L+++Y EG V +++
Sbjct: 112 KQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERY-TEGNPVMLVL 170
>gi|154411936|ref|XP_001579002.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121913204|gb|EAY18016.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 202
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 25/162 (15%)
Query: 29 YFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSN-PSKKML 87
YF T+ QM+ DRGY V S L S +F + + +L C SN +++L
Sbjct: 9 YFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYS--GNPHNLNECY---SNMEGERIL 63
Query: 88 VVYLGTEEIRTQAIRGLYGQI----LNKEALHGLILILQSNMNTFAR---------KEVL 134
+ E + ++ I+ + + +N+ + G IL T AR K +
Sbjct: 64 TFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTP---TAARNLDNVRSSGKTIE 120
Query: 135 KFPFK---VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
F F + I H L PKHEVL+ E+ +++K+Y + Q+
Sbjct: 121 FFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQL 162
>gi|68074989|ref|XP_679411.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|56500155|emb|CAI00595.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 107
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R++ R+T +ML DRGY + E + F+ F + L S + N + +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDANNKI 66
Query: 88 VVYLGTEEIRTQAIRGL--YGQILNKEALHGLILILQSNM 125
+VY +E++ ++ L + ++++++ IL+ Q+ +
Sbjct: 67 IVYF-VDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTL 105
>gi|50550027|ref|XP_502486.1| YALI0D06457p [Yarrowia lipolytica]
gi|54036340|sp|Q6CA26.1|RPAB1_YARLI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49648354|emb|CAG80674.1| YALI0D06457p [Yarrowia lipolytica CLIB122]
Length = 212
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 27/163 (16%)
Query: 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE----SLRLCLPLRSNPSK----- 84
RT +++ DRGY + + E+ S +F + CD ++C +P
Sbjct: 14 RTAKELVKDRGYTITDKEVNLSFDQF---VSEMCDPMGKPIKKKMCFMASPSPEAIEKFP 70
Query: 85 ---KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF-PFKV 140
+ V + + + +R I + G IL+ ++NM A + + P +
Sbjct: 71 EMGNIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANRLIPSVAPATI 129
Query: 141 EIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+ F H+L P H LS E+ L+++Y+++ Q+
Sbjct: 130 DTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQL 172
>gi|177960|gb|AAA58358.1| amiloride-binding protein [Homo sapiens]
Length = 713
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 64 GDKCDLESLRLCLPLRSNPSKKMLVVYLGTE----EIRTQAIRGLYG 106
G +C L L LCLP+RS+ ++L V+ G E E+ Q LYG
Sbjct: 313 GQRCALRRLELCLPVRSSSGLQVLNVHFGGERIAYEVSVQEAVALYG 359
>gi|396081727|gb|AFN83342.1| DNA-directed RNA polymerase I [Encephalitozoon romaleae SJ-2008]
Length = 210
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 20/151 (13%)
Query: 31 LSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLCLPLRSNPSKKMLV 88
LSR T ++M+ DRGY ++ +SL F R+ F + R L + +
Sbjct: 20 LSRNTTIEMIKDRGYT--TTQEVQSLESFHERYPFA-----LTKRSTLNFVCVDVDRPVG 72
Query: 89 VYLGTEE-IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY--- 144
++ G +E + + GL Q H ++++ Q T L F VEIF
Sbjct: 73 IHFGDDEKMGKKGFEGLLSQYEKDNIFHLILILPQFPSPTVMSMISLNPKFNVEIFLVEE 132
Query: 145 -------HILQPKHEVLSAGERDKLMKKYKI 168
H P H +LS E++ ++K K+
Sbjct: 133 MVFNKTKHSWVPPHRILSREEKENVLKALKL 163
>gi|392512756|emb|CAD25628.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 202
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRS-- 80
+LE LSR T ++M+ DRGY L +L F E L L RS
Sbjct: 2 ALELRALCLSRNTAIEMVRDRGYTTTQEVL--ALDGFH---------ERYPLALTKRSTL 50
Query: 81 -----NPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
N + + V + E++ +A GL Q H ++++ Q T L
Sbjct: 51 NFVCVNVDRPVAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIPLT 110
Query: 136 FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKI 168
F +EIF H P H VLS ER+ + + K+
Sbjct: 111 PRFSIEIFLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKL 153
>gi|342184881|emb|CCC94363.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma
congolense IL3000]
Length = 219
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 19/168 (11%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESL--RLCLP 77
G +L R F RTV +M+ DR Y P S + ++ +F + D+ E R+ LP
Sbjct: 9 GQEALAFDRMFRVLRTVGEMMRDRKYHFPTSLIPETVEQFCEQYVDRDTREIFRSRMTLP 68
Query: 78 L-RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
R S++ + + E+ +A++ Y ++ +I+++ S +N ++ V
Sbjct: 69 CERVGGSQRGRAMVFFSVELGMEAMKTYYQSAMDA-GCDRVIIVVHSKVNATVKRYVDYI 127
Query: 137 P-----FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIE 169
KV++F +H L PKH L E ++++ + +E
Sbjct: 128 NRSNTGAKVQLFDEDSLVVNITHHELVPKHTPLEDEEVREMLRAHSLE 175
>gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329590|gb|AGE95861.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 212
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRS-- 80
+LE LSR T ++M+ DRGY L +L F E L L RS
Sbjct: 12 ALELRALCLSRNTAIEMVRDRGYTTTQEVL--ALDGFH---------ERYPLALTKRSTL 60
Query: 81 -----NPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135
N + + V + E++ +A GL Q H ++++ Q T L
Sbjct: 61 NFVCVNVDRPVAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIPLT 120
Query: 136 FPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKI 168
F +EIF H P H VLS ER+ + + K+
Sbjct: 121 PRFSIEIFLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKL 163
>gi|260943051|ref|XP_002615824.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238851114|gb|EEQ40578.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 287
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSK-------- 84
R + + D GY + + E+ +L EF+ + + +C + P
Sbjct: 89 RTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKFPEMG 148
Query: 85 KMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF-PFKVEIF 143
+ V + + + +R I K G I I Q+++ A K + P +E+F
Sbjct: 149 SLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQTSITPSANKLIPTVSPATIEVF 207
Query: 144 ----------YHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+H L PKH LS E+ +L+ +Y+++ Q+
Sbjct: 208 QESDLVVNITHHELVPKHIRLSKPEKKELLDRYRLKESQL 247
>gi|332157776|ref|YP_004423055.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
gi|331033239|gb|AEC51051.1| DNA-directed RNA polymerase subunit H [Pyrococcus sp. NA2]
Length = 82
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 142 IFYHILQPKHEVLSAGERDKLMKKYKIEGKQVT 174
IF H+L P+H VLS E++ L+KKY+I Q+
Sbjct: 9 IFDHVLVPEHRVLSEEEKEALLKKYRITPAQLP 41
>gi|238488993|ref|XP_002375734.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
gi|220698122|gb|EED54462.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
Length = 79
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD 65
R + + RTV +ML DRGY V E+ SL EF+ + D
Sbjct: 18 RLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSD 55
>gi|225681878|gb|EEH20162.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb03]
Length = 171
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 79 RSNPSKKMLVVYL----GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL 134
+ NP + +Y+ + + T+ +R + ++++ H I I Q+ ++ A + +
Sbjct: 23 KPNPVPECGTIYVEFCADIQSVGTKQVRA-FNHFIDEQNYHTGIFISQTPISPSAMRVLN 81
Query: 135 KFPFK-----------VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
P + V I +H L PKH +LSA E+ +L+++Y+++ Q+
Sbjct: 82 SIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQL 131
>gi|303389965|ref|XP_003073214.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
gi|303302359|gb|ADM11854.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
Length = 214
Score = 36.6 bits (83), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 13 RSSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLE 70
++ ++ +LE LSR T ++M+ DRGY ++ ++L EF ++ F
Sbjct: 6 QTGKIIPNQMALELRALCLSRNTTIEMIKDRGYT--TTQEVQTLDEFHEKYPFA-----L 58
Query: 71 SLRLCLPLRSNPSKKMLVVYLGTEE-IRTQAIRGLYGQILNKEALHGLILILQSNMNTFA 129
+ R L + + + ++ G +E + + GL Q H ++++ + T
Sbjct: 59 TKRSTLNFVCVDTNRPVAIHFGEDEKMGKKVFEGLLTQYEKDNIFHLILILPLAPSPTVM 118
Query: 130 RKEVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKI 168
L F +EIF H P H +LS E++K+ K+
Sbjct: 119 SMISLNPKFCIEIFLVEEMIFNKTKHSWVPPHRILSREEKEKVFNTLKL 167
>gi|320590726|gb|EFX03169.1| RNA polymerase subunit [Grosmannia clavigera kw1407]
Length = 237
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 78/182 (42%), Gaps = 40/182 (21%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEF--RFTFGDKCDLESLRLCLPLRSNPSKK 85
+ + + RTV +M DRGY + E+ S +F +F+ D + R + + PS+
Sbjct: 20 KLWRAWRTVHEMCQDRGYELAEDEVKISFDDFVRQFSLPDGT---ADRGKMQFSARPSES 76
Query: 86 ML----------------------VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQS 123
M+ V ++ ++I + I+ + Q ++ + I++ Q
Sbjct: 77 MIKKFTPPPTAARPDPPTECGTIWVEFMTEQQIGVKEIKR-FLQHCSENSFRAGIMVTQG 135
Query: 124 NMNTFARKEV------------LKFPFKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGK 171
++ ARK + ++ V I +H L P H +LS E+ L+ +Y+++
Sbjct: 136 ALSAQARKVINATMMYTQIECFMQDDLLVNITHHELVPTHVLLSKEEKTALLSRYRLKET 195
Query: 172 QV 173
Q+
Sbjct: 196 QL 197
>gi|242082576|ref|XP_002441713.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
gi|241942406|gb|EES15551.1| hypothetical protein SORBIDRAFT_08g001130 [Sorghum bicolor]
Length = 274
Score = 36.2 bits (82), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVK 178
V I H+L+PKHEVL+ E+ KL K Y + + ++++
Sbjct: 201 VNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSHLPLMLE 239
>gi|242398378|ref|YP_002993802.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
gi|259494220|sp|C6A1F8.1|RPOH_THESM RecName: Full=DNA-directed RNA polymerase subunit H
gi|242264771|gb|ACS89453.1| DNA-directed RNA polymerase subunit H [Thermococcus sibiricus MM
739]
Length = 82
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 142 IFYHILQPKHEVLSAGERDKLMKKYKIEGKQV 173
IF H+L P+H VLS E ++L+KKY I+ Q+
Sbjct: 9 IFDHVLVPEHRVLSKEETEELLKKYNIKPSQL 40
>gi|118387602|ref|XP_001026905.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308672|gb|EAS06660.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 275
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 132 EVLKFPFKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIEGKQV 173
+V++ +K EIF+ H L PKH L+A E+ KLM KYKI Q+
Sbjct: 184 DVIQIFYKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQL 235
>gi|443920437|gb|ELU40353.1| hypothetical protein AG1IA_05623 [Rhizoctonia solani AG-1 IA]
Length = 133
Score = 35.8 bits (81), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 33/136 (24%)
Query: 43 RGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIR 102
+GY V E+ + F+ TF D P+ ++ + + + + I+
Sbjct: 18 QGYLVAEDEMNMDIQTFKSTFDD----------------PTNQIFIFFADEKNV---TIK 58
Query: 103 GLYGQILNKEAL-HGLILILQSNMNTFARK------------EVLKFPFKVEIFYHILQP 149
++ IL+++ + HG+I+ ++ M ARK E + V I +H L P
Sbjct: 59 TIFLGILDEKGITHGIIVFME-KMTPSARKVISAMSSQYSLEEFAEADLLVNITHHKLVP 117
Query: 150 KHEVLSAGERDKLMKK 165
+H+VL+ E+ L+++
Sbjct: 118 QHQVLTQVEKKALLER 133
>gi|407846764|gb|EKG02755.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCD--LESLRLCLP 77
G +L + F RTV +M+ DR Y V + + S+ EF+ + D + + R+ +P
Sbjct: 9 GQEALLYDKMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTDPREGVIHRDRMTVP 68
Query: 78 L-RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136
R S++ + +E + + ++ + Q ++ +I+++Q +N ++ V
Sbjct: 69 CERIGVSQRSRAMVFFSEGLSMETMKRYHTQ-ASEANCDRVIIVVQGRINAIVKRHVEDI 127
Query: 137 P-----FKVEIF----------YHILQPKHEVLSAGERDKLMKKYKIE 169
K+++F +H L PKH L E ++++ + +E
Sbjct: 128 NRSSLGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHSLE 175
>gi|83315223|ref|XP_730700.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 91
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 28 RYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKML 87
R++ R+T +ML DRGY + E + F+ F + L S + N + +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKNDANNKI 66
Query: 88 VVYLGTEEIRTQAIRGL 104
+VY +E++ ++ L
Sbjct: 67 IVYF-VDEVKKTGVKPL 82
>gi|167517495|ref|XP_001743088.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778187|gb|EDQ91802.1| predicted protein [Monosiga brevicollis MX1]
Length = 176
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 23/147 (15%)
Query: 27 YRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKM 86
YR + R T+ Q+ DRGY V + +L + F FG + PL P +
Sbjct: 12 YRLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQ----------PLNEQPRRSD 61
Query: 87 LVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFYHI 146
L + T + G+Y + G+ ++ + F KE++ V + H
Sbjct: 62 LDFVVQRASDPTDQL-GVY---FANDPKVGIAVV----RDFFEEKELV-----VNVTKHE 108
Query: 147 LQPKHEVLSAGERDKLMKKYKIEGKQV 173
L PKH + + E+ L+++YK++ +Q+
Sbjct: 109 LVPKHFLQTPEEKAALLERYKLKEQQL 135
>gi|149034609|gb|EDL89346.1| rCG29511, isoform CRA_b [Rattus norvegicus]
Length = 167
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 38 QMLNDRGYAVPNSELTRSLTEFRFTFGDK 66
Q+ +DRGY V EL ++L EF+ FGDK
Sbjct: 11 QLCHDRGYLVTQDELDQTLEEFKAQFGDK 39
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,652,348,880
Number of Sequences: 23463169
Number of extensions: 98533898
Number of successful extensions: 224019
Number of sequences better than 100.0: 429
Number of HSP's better than 100.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 223330
Number of HSP's gapped (non-prelim): 446
length of query: 179
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 46
effective length of database: 9,238,593,890
effective search space: 424975318940
effective search space used: 424975318940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)