Query 030295
Match_columns 179
No_of_seqs 146 out of 329
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3218 RNA polymerase, 25-kDa 100.0 3E-59 6.6E-64 386.1 16.2 156 23-179 6-174 (208)
2 PLN03111 DNA-directed RNA poly 100.0 2.6E-58 5.6E-63 384.2 16.3 159 20-179 2-172 (206)
3 PTZ00061 DNA-directed RNA poly 100.0 3.8E-57 8.3E-62 376.8 16.2 157 22-179 1-171 (205)
4 PF03871 RNA_pol_Rpb5_N: RNA p 100.0 1.8E-34 3.9E-39 214.2 0.9 86 23-108 4-92 (93)
5 PRK09570 rpoH DNA-directed RNA 99.5 6.4E-15 1.4E-19 107.1 2.7 41 139-179 3-43 (79)
6 PF01191 RNA_pol_Rpb5_C: RNA p 99.5 2E-14 4.3E-19 103.4 1.5 39 141-179 2-40 (74)
7 COG2012 RPB5 DNA-directed RNA 99.4 4.6E-14 1E-18 102.2 2.8 41 139-179 6-46 (80)
8 PF04471 Mrr_cat: Restriction 95.8 0.03 6.6E-07 40.3 5.7 63 73-136 37-100 (115)
9 PF13607 Succ_CoA_lig: Succiny 66.9 12 0.00027 29.4 4.7 80 34-133 15-99 (138)
10 PRK08485 DNA polymerase III su 62.8 19 0.00042 30.7 5.4 47 88-135 30-76 (206)
11 TIGR00640 acid_CoA_mut_C methy 61.8 50 0.0011 25.6 7.3 86 34-137 20-105 (132)
12 cd02072 Glm_B12_BD B12 binding 60.9 51 0.0011 25.9 7.2 75 34-126 17-91 (128)
13 PRK03298 hypothetical protein; 58.5 17 0.00037 31.5 4.3 39 97-137 161-202 (224)
14 KOG0975 Branched chain aminotr 52.6 7 0.00015 36.2 1.2 29 32-62 288-317 (379)
15 TIGR01501 MthylAspMutase methy 52.5 53 0.0012 25.9 6.0 75 33-125 18-92 (134)
16 PF03345 DDOST_48kD: Oligosacc 52.1 50 0.0011 30.9 6.7 86 33-137 14-101 (423)
17 COG1715 Mrr Restriction endonu 52.0 77 0.0017 28.7 7.5 76 84-171 214-290 (308)
18 cd02067 B12-binding B12 bindin 49.2 1E+02 0.0022 22.5 7.1 75 35-127 18-93 (119)
19 KOG1885 Lysyl-tRNA synthetase 48.9 1.7E+02 0.0037 28.4 9.7 130 23-160 51-207 (560)
20 KOG4196 bZIP transcription fac 48.5 14 0.00031 29.5 2.2 43 2-48 15-67 (135)
21 cd02071 MM_CoA_mut_B12_BD meth 47.4 96 0.0021 23.2 6.6 74 36-127 19-92 (122)
22 PF05920 Homeobox_KN: Homeobox 46.5 8.5 0.00018 24.3 0.5 24 150-173 7-30 (40)
23 PF13156 Mrr_cat_2: Restrictio 45.9 31 0.00068 27.2 3.8 80 56-137 16-99 (129)
24 PRK09539 tRNA-splicing endonuc 45.0 1.4E+02 0.003 23.6 7.2 66 38-122 42-107 (124)
25 COG1637 Predicted nuclease of 45.0 32 0.0007 30.3 4.0 50 86-137 175-228 (253)
26 KOG1232 Proteins containing th 43.0 20 0.00044 33.9 2.6 51 9-60 352-404 (511)
27 PRK05564 DNA polymerase III su 41.4 67 0.0015 27.8 5.5 42 92-134 69-114 (313)
28 PRK07993 DNA polymerase III su 41.3 82 0.0018 28.2 6.1 91 79-171 71-185 (334)
29 KOG1150 Predicted molecular ch 40.9 14 0.00031 31.9 1.2 74 2-84 5-89 (250)
30 PRK02261 methylaspartate mutas 40.6 1.5E+02 0.0032 23.1 6.8 72 35-125 22-94 (137)
31 cd07990 LPLAT_LCLAT1-like Lyso 39.5 52 0.0011 26.3 4.2 55 97-152 87-145 (193)
32 COG2344 AT-rich DNA-binding pr 39.5 52 0.0011 28.2 4.3 55 96-154 130-190 (211)
33 PF02100 ODC_AZ: Ornithine dec 38.9 86 0.0019 23.7 5.1 66 83-150 23-94 (108)
34 PF01939 DUF91: Protein of unk 38.6 45 0.00097 28.8 3.9 52 85-137 149-204 (228)
35 PRK06871 DNA polymerase III su 37.2 1.1E+02 0.0024 27.4 6.4 53 80-134 72-128 (325)
36 cd01900 YchF YchF subfamily. 35.4 20 0.00044 31.3 1.3 24 154-177 244-267 (274)
37 PRK08058 DNA polymerase III su 35.3 90 0.002 27.5 5.4 85 86-171 80-186 (329)
38 PRK05917 DNA polymerase III su 34.6 1.5E+02 0.0031 26.4 6.6 50 86-135 63-117 (290)
39 PF01650 Peptidase_C13: Peptid 33.4 1.4E+02 0.003 25.9 6.1 51 79-129 102-163 (256)
40 TIGR00075 hypD hydrogenase exp 32.6 2.6E+02 0.0056 26.0 8.0 84 80-168 133-219 (369)
41 PRK12399 tagatose 1,6-diphosph 32.2 3.5E+02 0.0076 24.7 8.7 92 84-178 122-246 (324)
42 TIGR03798 ocin_TIGR03798 bacte 31.0 40 0.00087 22.8 2.0 20 34-53 28-47 (64)
43 PF11513 TA0956: Thermoplasma 30.6 1.5E+02 0.0032 22.8 5.1 57 56-115 45-105 (110)
44 PF08479 POTRA_2: POTRA domain 30.3 46 0.00099 22.8 2.2 25 26-50 33-57 (76)
45 cd02070 corrinoid_protein_B12- 29.9 2.9E+02 0.0062 22.5 7.2 75 35-128 101-178 (201)
46 PRK05571 ribose-5-phosphate is 29.5 1.7E+02 0.0036 23.6 5.6 20 30-49 12-31 (148)
47 TIGR01120 rpiB ribose 5-phosph 29.2 1.7E+02 0.0037 23.4 5.6 20 30-49 11-30 (143)
48 KOG3035 Isoamyl acetate-hydrol 29.0 2.7E+02 0.0058 24.5 7.0 76 98-174 99-221 (245)
49 PRK13010 purU formyltetrahydro 28.4 4.1E+02 0.0089 23.4 9.3 106 53-169 64-171 (289)
50 TIGR02370 pyl_corrinoid methyl 27.3 3.4E+02 0.0075 22.1 8.0 77 34-129 102-181 (197)
51 PF08544 GHMP_kinases_C: GHMP 27.2 20 0.00044 24.3 -0.1 13 1-13 53-65 (85)
52 PRK07276 DNA polymerase III su 27.2 1.9E+02 0.0042 25.5 6.1 81 86-171 74-179 (290)
53 KOG3451 Uncharacterized conser 26.1 72 0.0016 22.9 2.6 53 113-168 3-66 (71)
54 PF11985 DUF3486: Protein of u 26.0 40 0.00087 27.3 1.5 27 32-63 14-40 (180)
55 PRK04019 rplP0 acidic ribosoma 25.5 1.5E+02 0.0034 26.4 5.2 33 139-172 148-181 (330)
56 PF07862 Nif11: Nitrogen fixat 25.3 32 0.0007 21.9 0.7 19 34-52 30-48 (49)
57 PRK15062 hydrogenase isoenzyme 25.2 4.3E+02 0.0093 24.6 8.0 106 53-169 99-214 (364)
58 TIGR01033 DNA-binding regulato 25.1 88 0.0019 27.0 3.5 47 117-163 171-218 (238)
59 COG0135 TrpF Phosphoribosylant 24.8 3.5E+02 0.0075 22.9 7.0 69 87-166 28-97 (208)
60 COG0050 TufB GTPases - transla 24.3 1.2E+02 0.0026 28.1 4.2 78 98-178 86-173 (394)
61 PF02938 GAD: GAD domain; Int 23.8 50 0.0011 24.0 1.5 61 110-173 6-80 (95)
62 PRK00024 hypothetical protein; 23.7 4.5E+02 0.0097 22.2 8.6 98 56-155 110-217 (224)
63 PRK04247 hypothetical protein; 23.7 1.4E+02 0.0031 25.9 4.5 63 71-137 161-227 (238)
64 cd02069 methionine_synthase_B1 22.8 3.7E+02 0.008 22.4 6.7 78 34-130 106-184 (213)
65 PF13864 Enkurin: Calmodulin-b 22.4 23 0.00049 26.1 -0.6 23 147-169 30-52 (98)
66 PTZ00215 ribose 5-phosphate is 22.3 3E+02 0.0065 22.2 5.9 20 30-49 14-35 (151)
67 PRK08622 galactose-6-phosphate 22.1 2.6E+02 0.0057 23.1 5.6 20 30-49 12-31 (171)
68 cd08616 PI-PLCXD1c Catalytic d 21.9 3.2E+02 0.007 23.9 6.4 37 96-133 199-235 (290)
69 PF04002 RadC: RadC-like JAB d 21.6 3.6E+02 0.0079 20.4 6.2 88 67-155 19-116 (123)
70 PRK03094 hypothetical protein; 21.3 42 0.00092 24.6 0.7 15 35-49 12-26 (80)
71 COG1180 PflA Pyruvate-formate 21.1 5.3E+02 0.012 22.1 8.0 79 86-167 86-200 (260)
No 1
>KOG3218 consensus RNA polymerase, 25-kDa subunit (common to polymerases I, II and III) [Transcription]
Probab=100.00 E-value=3e-59 Score=386.14 Aligned_cols=156 Identities=35% Similarity=0.638 Sum_probs=153.1
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCCC-CCCCceEEEecCCCCCCCeEEEEecCCCccchhHH
Q 030295 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK-CDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAI 101 (179)
Q Consensus 23 ~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~-~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~I 101 (179)
+.|++||||+|||++|||+||||.|+++|++++|++|+++||++ |+|+.|+|+|.|.+||+++||||||++++||+|+|
T Consensus 6 e~E~~rl~~ar~T~~qMlrDRGY~vt~~el~ltLe~F~~~yg~~~p~r~~L~~~~~~~~dp~~ki~V~F~~~~kvgvk~~ 85 (208)
T KOG3218|consen 6 EEEIYRLYLARKTAMQMLRDRGYTVTQEELDLTLEEFKARYGDKMPDREDLRILAAHRDDPTDKIYVFFPEEPKVGVKTM 85 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccHHHhhhhHHHHHHHhccCCcchhhEEEEeccCCCCcCcEEEEeCCCCcccHHHH
Confidence 68999999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccC--Cceeeee----------eeecCCccccCHHHHHHHHHHcCCC
Q 030295 102 RGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKLMKKYKIE 169 (179)
Q Consensus 102 r~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~--~~ie~f~----------H~lVPkH~~l~~eEk~~lL~~y~i~ 169 (179)
|.|+.+| .++|++++|||+|++|||+|++++..++ |+||+|+ |+|||||++||+|||++||++|+++
T Consensus 86 k~~~~~~-~~~ni~~~IlV~q~~mt~~A~k~i~~~~p~f~iE~F~e~eLlvNIT~H~lvPkH~vL~~eEK~~LL~ry~l~ 164 (208)
T KOG3218|consen 86 KTYVIQM-QSENIFRAILVVQNGMTPSALKALSDFTPKFTIEVFLEAELLVNITEHELVPKHQVLTDEEKEELLRRYKLK 164 (208)
T ss_pred HHHHHHH-HhcCceEEEEEecCCCChHHHHHHHhcCCceEEEeeehhhheeeccceeecCceEEcCHHHHHHHHHHhcCC
Confidence 9999999 8899999999999999999999999998 9999998 9999999999999999999999999
Q ss_pred CCCCcccccC
Q 030295 170 GKQVTILVKQ 179 (179)
Q Consensus 170 ~~qLP~i~~~ 179 (179)
++||||||.+
T Consensus 165 e~qLPRIq~~ 174 (208)
T KOG3218|consen 165 ETQLPRIQKK 174 (208)
T ss_pred cccCCeeecc
Confidence 9999999963
No 2
>PLN03111 DNA-directed RNA polymerase II subunit family protein; Provisional
Probab=100.00 E-value=2.6e-58 Score=384.22 Aligned_cols=159 Identities=42% Similarity=0.711 Sum_probs=154.4
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchh
Q 030295 20 GGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQ 99 (179)
Q Consensus 20 ~~~~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk 99 (179)
+.++.|+.||||+|||++|||+||||.|+++|+++|+++|+++||++|+|++|+|+|.+.+||+++|||||+++++||+|
T Consensus 2 ~~~~~e~~rl~r~rrTv~eMl~DRGY~V~~~el~~s~~~F~~~~~~~~~r~~l~~~~~~~~d~~~~i~V~F~~~~kvgvk 81 (206)
T PLN03111 2 DTGSEESTRLYLVRRTVLEMLRDRGYLVSDSELNLTLSEFREKFGEKPKREDLRISAPKRSDPSKKILVFFPEEEKVGVK 81 (206)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccCCccCHHHHcCCHHHHHHHHcCCcCHHHcEeeeecCCCCCCcEEEEeCCCCccCHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccC--Cceeeee----------eeecCCccccCHHHHHHHHHHcC
Q 030295 100 AIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKLMKKYK 167 (179)
Q Consensus 100 ~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~--~~ie~f~----------H~lVPkH~~l~~eEk~~lL~~y~ 167 (179)
+||.|+++| +++|++++|||+|++|||+|++++++++ ++||+|+ |+|||||++||+|||++||++|+
T Consensus 82 ~ir~~~~~~-~~e~~~r~IlV~q~~itp~A~~~i~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eEk~~lL~~y~ 160 (206)
T PLN03111 82 TIKTYAERM-KDENVSRAILVLQSKLTPFAKQALSEFNSKFKIEVFQETELLVNITKHVLVPKHQVLTDEEKKTLLKRYT 160 (206)
T ss_pred HHHHHHHHH-hhcCcceEEEEECCCCCHHHHHHHHhhCcCceEEEeehhHheeccccceecCCeEEcCHHHHHHHHHHcC
Confidence 999999999 9999999999999999999999999995 8999998 99999999999999999999999
Q ss_pred CCCCCCcccccC
Q 030295 168 IEGKQVTILVKQ 179 (179)
Q Consensus 168 i~~~qLP~i~~~ 179 (179)
++++|||||+.+
T Consensus 161 i~~~qLPrI~~~ 172 (206)
T PLN03111 161 VKETQLPRIQVS 172 (206)
T ss_pred CCHHHCCccccc
Confidence 999999999874
No 3
>PTZ00061 DNA-directed RNA polymerase; Provisional
Probab=100.00 E-value=3.8e-57 Score=376.78 Aligned_cols=157 Identities=25% Similarity=0.463 Sum_probs=150.8
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCCC-CCCCceEEEecCCCCCCCeEEEEecC-CCccchh
Q 030295 22 GSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK-CDLESLRLCLPLRSNPSKKMLVVYLG-TEEIRTQ 99 (179)
Q Consensus 22 ~~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~-~~r~~L~~~~~~~~dp~~~i~VfF~~-~~~vgvk 99 (179)
|++++.||||+|||++|||+||||.|+++|+++|+++|+++||++ +.|++|+|+|++.+||+++|||||++ +++||+|
T Consensus 1 ~~~~~~rl~r~rrTv~eMl~DRGY~V~~~el~~s~~~F~~~~~~~~~~r~~l~~~~~~~~d~~~~i~VfF~~~~~~vgvk 80 (205)
T PTZ00061 1 MDDSETRFFRCRRTCCEMLEDRGYIITSQEKLETFATFKERFEENERLRSRMLMVASHKTDPTNRIIVYFADETKKTGVK 80 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHhccCCccCHHHHcCCHHHHHHHhccCcccHhHcEEEeecCCCCCCcEEEEeCCCCCcCCHH
Confidence 457899999999999999999999999999999999999999988 47899999999999999999999999 5699999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccC--Cceeeee----------eeecCCccccCHHHHHHHHHHcC
Q 030295 100 AIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKLMKKYK 167 (179)
Q Consensus 100 ~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~--~~ie~f~----------H~lVPkH~~l~~eEk~~lL~~y~ 167 (179)
+||.|+++| +++|+++||||+|++|||+|++++++++ ++||+|+ |+|||+|++||+|||++||++|+
T Consensus 81 ~ir~~~~~~-~~~n~~r~IlV~q~~ltp~Ar~~i~~~~~~~~iE~F~E~eLlvnit~H~lVPkH~~Ls~eEk~~lL~~y~ 159 (205)
T PTZ00061 81 PIRELTEKM-EEHDIQRAILVTQNVLTPFAKDAILEAAPRHIIENFLETELLVNITKHELVPKHIPLTDDEKLNLLQRYK 159 (205)
T ss_pred HHHHHHHHH-hhcCCceEEEEECCCCCHHHHHHHHhhCCCcEEEEeeehheEEecccceecCCeEEcCHHHHHHHHHHhC
Confidence 999999999 9999999999999999999999999886 8999998 99999999999999999999999
Q ss_pred CCCCCCcccccC
Q 030295 168 IEGKQVTILVKQ 179 (179)
Q Consensus 168 i~~~qLP~i~~~ 179 (179)
++++|||||+.+
T Consensus 160 i~~~qLPrI~~~ 171 (205)
T PTZ00061 160 VKESQLPRIQSA 171 (205)
T ss_pred CCHHHCCccccc
Confidence 999999999874
No 4
>PF03871 RNA_pol_Rpb5_N: RNA polymerase Rpb5, N-terminal domain; InterPro: IPR005571 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region, plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) (IPR000783 from INTERPRO) [, , , ]. This entry represents the N-terminal domain of eukaryotic RPB5, which has a core structure consisting of 3 layers alpha/beta/alpha []. The N-terminal domain is involved in DNA binding and is part of the jaw module in the RNA pol II structure []. This module is important for positioning the downstream DNA.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 3H0G_Q 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E 1I50_E ....
Probab=100.00 E-value=1.8e-34 Score=214.23 Aligned_cols=86 Identities=36% Similarity=0.589 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCC---CCCCCceEEEecCCCCCCCeEEEEecCCCccchh
Q 030295 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD---KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQ 99 (179)
Q Consensus 23 ~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~---~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk 99 (179)
+.|++||||||||++|||+||||.|+++|+++|+++|+++||+ .|+|++|+|++.+.+||+++|+|||+++++||+|
T Consensus 4 ~~e~~rl~rirrTv~eMl~DRGY~V~~~el~~s~~~F~~~~~~~~~~~~r~~L~~~~~~~~d~~~~i~V~F~~~~kvgvk 83 (93)
T PF03871_consen 4 DEEVSRLFRIRRTVMEMLRDRGYLVSEEELNMSLEEFKEKYGENPGNPDRERLTISASKRDDPSDKIFVFFPEEPKVGVK 83 (93)
T ss_dssp THHHHHHHHHHCCCCCCCCCCTEE--CCCCS--HHHHHHHCB-SSSSB-GCCT-EEEEESCHT--EEEEEE-SSSCESCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccChhhhcCCHHHHHHHHcccCCCCCHHHeeeeccCCCCCCCeEEEEeCCCCCcCHH
Confidence 5899999999999999999999999999999999999999998 7999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 030295 100 AIRGLYGQI 108 (179)
Q Consensus 100 ~Ir~~~~~~ 108 (179)
+||.|+++|
T Consensus 84 ~Ir~~~~~m 92 (93)
T PF03871_consen 84 TIRKYCERM 92 (93)
T ss_dssp CCHHHCHHH
T ss_pred HHHHHHHhc
Confidence 999999998
No 5
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=99.51 E-value=6.4e-15 Score=107.15 Aligned_cols=41 Identities=37% Similarity=0.600 Sum_probs=38.4
Q ss_pred ceeeeeeeecCCccccCHHHHHHHHHHcCCCCCCCcccccC
Q 030295 139 KVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 139 ~ie~f~H~lVPkH~~l~~eEk~~lL~~y~i~~~qLP~i~~~ 179 (179)
.+++.+|+|||+|++||+||+++||++|+++++|||||+.+
T Consensus 3 ~~nit~H~lVPkH~iLs~eE~~~lL~~y~i~~~qLP~I~~~ 43 (79)
T PRK09570 3 KFDVLDHELVPEHEILSEEEAKKLLKEYGIKPEQLPKIKAS 43 (79)
T ss_pred ceecccccccCCeEECCHHHHHHHHHHcCCCHHHCCceecc
Confidence 46778899999999999999999999999999999999874
No 6
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=99.45 E-value=2e-14 Score=103.43 Aligned_cols=39 Identities=41% Similarity=0.661 Sum_probs=32.2
Q ss_pred eeeeeeecCCccccCHHHHHHHHHHcCCCCCCCcccccC
Q 030295 141 EIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 141 e~f~H~lVPkH~~l~~eEk~~lL~~y~i~~~qLP~i~~~ 179 (179)
++..|+|||+|++||+||+++||++|+++++|||||+.+
T Consensus 2 ni~~H~lVPkH~ils~eE~~~lL~~y~i~~~qLP~I~~~ 40 (74)
T PF01191_consen 2 NITKHELVPKHEILSEEEKKELLKKYNIKPEQLPKILSS 40 (74)
T ss_dssp -CTSSTTC-EEEEE-HHHHHHHHHHTT--TTCSSEEETT
T ss_pred CcccceecCCeEEcCHHHHHHHHHHhCCChhhCCccccc
Confidence 567899999999999999999999999999999999874
No 7
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=99.44 E-value=4.6e-14 Score=102.22 Aligned_cols=41 Identities=34% Similarity=0.511 Sum_probs=38.5
Q ss_pred ceeeeeeeecCCccccCHHHHHHHHHHcCCCCCCCcccccC
Q 030295 139 KVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 139 ~ie~f~H~lVPkH~~l~~eEk~~lL~~y~i~~~qLP~i~~~ 179 (179)
+++++.|+|||+|++||+||++++|++|+|+++|||||+.+
T Consensus 6 ~~~v~~H~lVPeH~vls~eE~~~vLk~l~i~~~qLPkI~~~ 46 (80)
T COG2012 6 KFNVLDHELVPEHEVLSEEEAKEVLKELGIEPEQLPKIKAS 46 (80)
T ss_pred ceeeccccccCceEEcCHHHHHHHHHHhCCCHHHCCccccc
Confidence 57788999999999999999999999999999999999864
No 8
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=95.76 E-value=0.03 Score=40.28 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=41.2
Q ss_pred EEEecCCCCCCCeEEEEecC-CCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhcc
Q 030295 73 RLCLPLRSNPSKKMLVVYLG-TEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF 136 (179)
Q Consensus 73 ~~~~~~~~dp~~~i~VfF~~-~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~ 136 (179)
.+.+.+.+.....++|.+-. ..+++.+.|+.++..+ ...+...+|||+.+.+|+.|++.+...
T Consensus 37 Di~~~~~~~~~~~~~vqcK~~~~~v~~~~v~~~~~~~-~~~~~~~~iivt~~~~t~~a~~~~~~~ 100 (115)
T PF04471_consen 37 DIIAEKDDLGKERILVQCKRYKKKVDVKAVRQLIGKA-KKYGADKGIIVTSSGFTPEAKEFAEKF 100 (115)
T ss_dssp EEEEEETT---EEEEEEE---S-EE-HHHHHHHHHHH-GGGT-SEEEEE-SSEE-HHHHHHHH--
T ss_pred EEEEEEcccCceEEEEEEEEeccccchHHHHHHhhhh-hccCCCEEEEEECCcCCHHHHHHHHhh
Confidence 34444432222456666633 3579999999999999 889999999999999999999988764
No 9
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=66.86 E-value=12 Score=29.35 Aligned_cols=80 Identities=15% Similarity=0.305 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCCccC-----cccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHH
Q 030295 34 RTVLQMLNDRGYAVP-----NSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQI 108 (179)
Q Consensus 34 rTv~eMl~DRGY~V~-----~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~ 108 (179)
-++++++.+||.-++ -.+..++..||.+.|.+. |+-++.+.|.+. ++.=+.|++.+
T Consensus 15 ~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D---------------~~t~~I~ly~E~----~~d~~~f~~~~ 75 (138)
T PF13607_consen 15 TAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAED---------------PDTRVIVLYLEG----IGDGRRFLEAA 75 (138)
T ss_dssp HHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT----------------SS--EEEEEES------S-HHHHHHHH
T ss_pred HHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcC---------------CCCCEEEEEccC----CCCHHHHHHHH
Confidence 357788999988775 235677889998887554 444455666553 22227777776
Q ss_pred hhccCCceEEEEEcCCCCHHHHHHh
Q 030295 109 LNKEALHGLILILQSNMNTFARKEV 133 (179)
Q Consensus 109 ~~~eni~~~IlV~q~~lt~~Akk~l 133 (179)
..-...+=|++++.+-|+..+++.
T Consensus 76 -~~a~~~KPVv~lk~Grt~~g~~aa 99 (138)
T PF13607_consen 76 -RRAARRKPVVVLKAGRTEAGARAA 99 (138)
T ss_dssp -HHHCCCS-EEEEE-----------
T ss_pred -HHHhcCCCEEEEeCCCchhhhhhh
Confidence 544444778888888777666544
No 10
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=62.79 E-value=19 Score=30.69 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=32.6
Q ss_pred EEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhc
Q 030295 88 VVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLK 135 (179)
Q Consensus 88 VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~ 135 (179)
.+|+.+ .+||..||.+++.+....+-.+.||.--..+|..|..|+-.
T Consensus 30 ~~f~~~-~i~Vd~iReii~~~~~~~~~~k~iI~~a~~l~~~A~NaLLK 76 (206)
T PRK08485 30 RFFIKE-EFKIEDAKEVIAEAYIAESEEKIIVIAAPSYGIEAQNALLK 76 (206)
T ss_pred EEECCC-CCCHHHHHHHHHHHhhCCCCcEEEEEchHhhCHHHHHHHHH
Confidence 444443 69999999999997334445566666667789888776643
No 11
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.82 E-value=50 Score=25.63 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccC
Q 030295 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEA 113 (179)
Q Consensus 34 rTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~en 113 (179)
+-+.-||++-||.|-+.-...|.++|.+..-+. +-+ +|.-|.-..-.+..++.+++.+ .+++
T Consensus 20 ~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~-~ad----------------ii~iSsl~~~~~~~~~~~~~~L-~~~g 81 (132)
T TIGR00640 20 KVIATAYADLGFDVDVGPLFQTPEEIARQAVEA-DVH----------------VVGVSSLAGGHLTLVPALRKEL-DKLG 81 (132)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-CCC----------------EEEEcCchhhhHHHHHHHHHHH-HhcC
Confidence 456679999999999988889999998775221 111 1122222223466788889998 8888
Q ss_pred CceEEEEEcCCCCHHHHHHhhccC
Q 030295 114 LHGLILILQSNMNTFARKEVLKFP 137 (179)
Q Consensus 114 i~~~IlV~q~~lt~~Akk~l~~~~ 137 (179)
.....+++.+.+.+.-...+.+++
T Consensus 82 ~~~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 82 RPDILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred CCCCEEEEeCCCChHhHHHHHHCC
Confidence 766556666656554445555554
No 12
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=60.94 E-value=51 Score=25.86 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccC
Q 030295 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEA 113 (179)
Q Consensus 34 rTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~en 113 (179)
+=+.-||++.||.|-+--++.+.++|.+..-+. +.+-+.+++- -.-.+..++.+++.+ .+.+
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~-~adiVglS~L----------------~t~~~~~~~~~~~~l-~~~g 78 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET-DADAILVSSL----------------YGHGEIDCKGLREKC-DEAG 78 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEEEEecc----------------ccCCHHHHHHHHHHH-HHCC
Confidence 345559999999999988899999999876332 1222222221 123466788888998 8899
Q ss_pred CceEEEEEcCCCC
Q 030295 114 LHGLILILQSNMN 126 (179)
Q Consensus 114 i~~~IlV~q~~lt 126 (179)
+....+++.+.+.
T Consensus 79 l~~v~vivGG~~~ 91 (128)
T cd02072 79 LKDILLYVGGNLV 91 (128)
T ss_pred CCCCeEEEECCCC
Confidence 9666677777753
No 13
>PRK03298 hypothetical protein; Provisional
Probab=58.52 E-value=17 Score=31.46 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHhhcc---CCceEEEEEcCCCCHHHHHHhhccC
Q 030295 97 RTQAIRGLYGQILNKE---ALHGLILILQSNMNTFARKEVLKFP 137 (179)
Q Consensus 97 gvk~Ir~~~~~~~~~e---ni~~~IlV~q~~lt~~Akk~l~~~~ 137 (179)
+|.++..|++.+ +.+ .-=|||||.|+ +||.|+..+.+-+
T Consensus 161 aV~QL~RYve~l-~rd~~~~~VRGIlvAp~-It~~Ar~Ll~drG 202 (224)
T PRK03298 161 GVEQLTRYLELL-NRDPLLAPVRGVFAAQE-IKPQARTLAEDRG 202 (224)
T ss_pred HHHHHHHHHHHH-hhCcCcCCceEEEECCc-CCHHHHHHHHHcC
Confidence 799999999999 544 23689999876 9999999998766
No 14
>KOG0975 consensus Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily [Amino acid transport and metabolism]
Probab=52.61 E-value=7 Score=36.17 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCC-CccCcccccCCHHHHHHH
Q 030295 32 SRRTVLQMLNDRG-YAVPNSELTRSLTEFRFT 62 (179)
Q Consensus 32 vrrTv~eMl~DRG-Y~V~~~el~~sl~~F~~~ 62 (179)
.|++++|+.+|+| |.|.+. ++|.+||.+-
T Consensus 288 TR~sileLa~~~g~~~V~Er--~vtv~e~~~A 317 (379)
T KOG0975|consen 288 TRKSILELARDLGEFKVEER--DVTVDELKTA 317 (379)
T ss_pred cHHHHHHHHHHhCceEEEEE--EEeHHHhhhh
Confidence 4899999999999 999884 5577888754
No 15
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.49 E-value=53 Score=25.91 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhcc
Q 030295 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKE 112 (179)
Q Consensus 33 rrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~e 112 (179)
.+-+.-||++.||.|-+-=...|.++|.+..-+. +.+-+-++.-. --.+..++.+.+.+ .++
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~-~adiVglS~l~----------------~~~~~~~~~~~~~l-~~~ 79 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET-KADAILVSSLY----------------GHGEIDCKGLRQKC-DEA 79 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEEEEeccc----------------ccCHHHHHHHHHHH-HHC
Confidence 3566779999999999877888999999875322 12222222211 13345688888998 889
Q ss_pred CCceEEEEEcCCC
Q 030295 113 ALHGLILILQSNM 125 (179)
Q Consensus 113 ni~~~IlV~q~~l 125 (179)
++....+|+.+.+
T Consensus 80 gl~~~~vivGG~~ 92 (134)
T TIGR01501 80 GLEGILLYVGGNL 92 (134)
T ss_pred CCCCCEEEecCCc
Confidence 8876666676753
No 16
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=52.12 E-value=50 Score=30.93 Aligned_cols=86 Identities=15% Similarity=0.256 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCCCccCccccc-CCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhc
Q 030295 33 RRTVLQMLNDRGYAVPNSELT-RSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNK 111 (179)
Q Consensus 33 rrTv~eMl~DRGY~V~~~el~-~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~ 111 (179)
..+.++.|++|||.+.=...+ -++.=|+ ||+.. .+.|-+..++... -.+.+.++.|-+|++.=
T Consensus 14 yS~Ff~~L~~rg~~l~~~~~~d~~l~L~~--~ge~~-YD~LIif~~~~k~----------~g~~ls~~~ll~Fvd~G--- 77 (423)
T PF03345_consen 14 YSTFFNSLKERGYELTFKSADDESLSLFK--YGERL-YDHLIIFPPSVKE----------FGGSLSPKTLLDFVDNG--- 77 (423)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCCcchhh--CChhh-cceEEEeCCcccc----------cCCCCCHHHHHHHHhCC---
Confidence 778899999999999632221 1223332 34332 4445333322211 11347777777665542
Q ss_pred cCCceEEEEEcCC-CCHHHHHHhhccC
Q 030295 112 EALHGLILILQSN-MNTFARKEVLKFP 137 (179)
Q Consensus 112 eni~~~IlV~q~~-lt~~Akk~l~~~~ 137 (179)
.+.++++... ++...|..+.+++
T Consensus 78 ---gNilv~~s~~~~~~~ir~~~~E~g 101 (423)
T PF03345_consen 78 ---GNILVAGSSDAIPDSIREFANELG 101 (423)
T ss_pred ---CcEEEEeCCCcCcHHHHHHHHHCC
Confidence 4566666666 7888888888886
No 17
>COG1715 Mrr Restriction endonuclease [Defense mechanisms]
Probab=51.96 E-value=77 Score=28.70 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=57.4
Q ss_pred CeEEEEe-cCCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccCCceeeeeeeecCCccccCHHHHHHH
Q 030295 84 KKMLVVY-LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKL 162 (179)
Q Consensus 84 ~~i~VfF-~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~~~ie~f~H~lVPkH~~l~~eEk~~l 162 (179)
+.|||-= .-+..||...|++|..-+ .-....++++|+-+..|+.|+...+.+. ++-+.++-+.-..|
T Consensus 214 d~iyiQAKR~~~tv~rpEIq~FagaL-~g~kA~~GVFitTS~fs~~A~~~a~~i~-----------~~ivLiDG~~L~~l 281 (308)
T COG1715 214 DRIYVQAKRWKNTVGRPEIQEFAGAL-EGHKAKRGVFITTSGFSAGARAYAERIL-----------GRIVLIDGQRLAHL 281 (308)
T ss_pred eeEEEEeeecCCCcCCHHHHHHHHHh-hhhccCCcEEEECCCCCHHHHHHHHhcc-----------CeEEEechHHHHHH
Confidence 4555543 224479999999999998 8889999999999999999988776533 22345566777778
Q ss_pred HHHcCCCCC
Q 030295 163 MKKYKIEGK 171 (179)
Q Consensus 163 L~~y~i~~~ 171 (179)
+.+|++-.+
T Consensus 282 miey~vGV~ 290 (308)
T COG1715 282 MIEYDVGVS 290 (308)
T ss_pred HHHhCcCcc
Confidence 888877654
No 18
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=49.17 E-value=1e+02 Score=22.51 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=46.6
Q ss_pred HHHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCC
Q 030295 35 TVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEAL 114 (179)
Q Consensus 35 Tv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni 114 (179)
=+..+|+..||.|..-..+++.++|.+...+. +|. + |.++....-....++.+++.+ .+.+-
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~--------------~pd--v-V~iS~~~~~~~~~~~~~i~~l-~~~~~ 79 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--------------DAD--A-IGLSGLLTTHMTLMKEVIEEL-KEAGL 79 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--------------CCC--E-EEEeccccccHHHHHHHHHHH-HHcCC
Confidence 45578999999998766788888997764211 221 2 222222223557888899998 66665
Q ss_pred -ceEEEEEcCCCCH
Q 030295 115 -HGLILILQSNMNT 127 (179)
Q Consensus 115 -~~~IlV~q~~lt~ 127 (179)
+-.|+|-....+.
T Consensus 80 ~~~~i~vGG~~~~~ 93 (119)
T cd02067 80 DDIPVLVGGAIVTR 93 (119)
T ss_pred CCCeEEEECCCCCh
Confidence 4445555554554
No 19
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=48.95 E-value=1.7e+02 Score=28.42 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCccC--cccccCCHHHHHHHhCCC-----CCCCc----------------eEEEecCC
Q 030295 23 SLESYRYFLSRRTVLQMLNDRGYAVP--NSELTRSLTEFRFTFGDK-----CDLES----------------LRLCLPLR 79 (179)
Q Consensus 23 ~~e~~rL~rvrrTv~eMl~DRGY~V~--~~el~~sl~~F~~~f~~~-----~~r~~----------------L~~~~~~~ 79 (179)
+.....+|..|.-.++-|+.-|-... +-..++|+.+|.++|... .+-.. |.|..-+.
T Consensus 51 ~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~ 130 (560)
T KOG1885|consen 51 TSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHG 130 (560)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEec
Confidence 34467789988888888877765443 335789999999999641 11111 22222222
Q ss_pred CCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceE-EEEEcCCCCHHHHHHhhccCCceeeee---eeecCCccccC
Q 030295 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGL-ILILQSNMNTFARKEVLKFPFKVEIFY---HILQPKHEVLS 155 (179)
Q Consensus 80 ~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~-IlV~q~~lt~~Akk~l~~~~~~ie~f~---H~lVPkH~~l~ 155 (179)
+ ..++.|.+......+-. .|.+.+ +.+.+| ||=+.+.+.-+-+..++-++..+-++. |.|=++|-.|+
T Consensus 131 ~--g~klQvm~~~~~~~~~~---~F~~~~---~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLk 202 (560)
T KOG1885|consen 131 D--GVKLQVMANAKKITSEE---DFEQLH---KFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLK 202 (560)
T ss_pred C--CeEEEEEEehhhcCCHH---HHHHHH---hhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCC
Confidence 2 23344444332211111 143333 455666 554555543332333333334443343 87777999999
Q ss_pred HHHHH
Q 030295 156 AGERD 160 (179)
Q Consensus 156 ~eEk~ 160 (179)
+.|++
T Consensus 203 D~EtR 207 (560)
T KOG1885|consen 203 DKETR 207 (560)
T ss_pred cHHHH
Confidence 97754
No 20
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=48.51 E-value=14 Score=29.53 Aligned_cols=43 Identities=40% Similarity=0.546 Sum_probs=30.6
Q ss_pred CCCCCCcccccccccccc----------CCCchhHHHHHHHHHHHHHHhcCCCCccC
Q 030295 2 GGSGGGGECITRSSHVME----------GGGSLESYRYFLSRRTVLQMLNDRGYAVP 48 (179)
Q Consensus 2 ~~~~~~~~~~~~~~~~~m----------~~~~~e~~rL~rvrrTv~eMl~DRGY~V~ 48 (179)
|++|-|++|+++..-+-| ...-.|+.||=.-||| |+.|||.-+
T Consensus 15 ~~~~~~~d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRT----LKNRGYA~s 67 (135)
T KOG4196|consen 15 GESGEGGDRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRT----LKNRGYAQS 67 (135)
T ss_pred cCCCCCCCCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH----HhhhhHHHH
Confidence 577888899998322222 2235678899888998 468999876
No 21
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.38 E-value=96 Score=23.21 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=46.9
Q ss_pred HHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCc
Q 030295 36 VLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALH 115 (179)
Q Consensus 36 v~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~ 115 (179)
+.-|++..||.|..--.+.+.++|.+.-.+. +| +-+.+.+.. .-....++.+++.+ .+.+..
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~--------------~~-d~V~iS~~~--~~~~~~~~~~~~~L-~~~~~~ 80 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAAIQE--------------DV-DVIGLSSLS--GGHMTLFPEVIELL-RELGAG 80 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--------------CC-CEEEEcccc--hhhHHHHHHHHHHH-HhcCCC
Confidence 3458999999998877778889997764221 11 112222222 34466788999998 777776
Q ss_pred eEEEEEcCCCCH
Q 030295 116 GLILILQSNMNT 127 (179)
Q Consensus 116 ~~IlV~q~~lt~ 127 (179)
...+++.+...+
T Consensus 81 ~i~i~~GG~~~~ 92 (122)
T cd02071 81 DILVVGGGIIPP 92 (122)
T ss_pred CCEEEEECCCCH
Confidence 655566655444
No 22
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=46.50 E-value=8.5 Score=24.29 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=18.0
Q ss_pred CccccCHHHHHHHHHHcCCCCCCC
Q 030295 150 KHEVLSAGERDKLMKKYKIEGKQV 173 (179)
Q Consensus 150 kH~~l~~eEk~~lL~~y~i~~~qL 173 (179)
.|+--|++||++|.+..++...|+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi 30 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQI 30 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHH
Confidence 467789999999999999887775
No 23
>PF13156 Mrr_cat_2: Restriction endonuclease
Probab=45.90 E-value=31 Score=27.24 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=51.2
Q ss_pred HHHHHHHhCCC-CCCCceEEEecCCCCCC-CeEEEEe-cCCCccchhHHHHHHHHHhhccCCceEEEEEcC-CCCHHHHH
Q 030295 56 LTEFRFTFGDK-CDLESLRLCLPLRSNPS-KKMLVVY-LGTEEIRTQAIRGLYGQILNKEALHGLILILQS-NMNTFARK 131 (179)
Q Consensus 56 l~~F~~~f~~~-~~r~~L~~~~~~~~dp~-~~i~VfF-~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~-~lt~~Akk 131 (179)
..+|-.+++.. +| .-.-+++...++.. --|..-| .++.+|..+.|-.|+... ....+.+.|||.-. ++++.|.+
T Consensus 16 w~dwp~~~~~~~~D-tGIDLVA~~~~~g~~~AIQCKfY~~~~~I~k~didSF~s~s-gk~~f~~rliisTt~~~s~nAe~ 93 (129)
T PF13156_consen 16 WSDWPERYGWGGKD-TGIDLVARTRDGGEYWAIQCKFYDPDHTIQKSDIDSFFSAS-GKSRFSRRLIISTTDKWSKNAEK 93 (129)
T ss_pred hhhhhHhhCCCCCC-CCEeEEEEEcCCCcEEEEEEEeeCCCceEcHHHhhHHHHhc-CCccccCcEEEEcCcHhhHHHHH
Confidence 34555444322 22 23455655443321 1355555 445689999999999998 77778777777654 79999999
Q ss_pred HhhccC
Q 030295 132 EVLKFP 137 (179)
Q Consensus 132 ~l~~~~ 137 (179)
++..-.
T Consensus 94 ~l~~q~ 99 (129)
T PF13156_consen 94 ALENQS 99 (129)
T ss_pred HHHcCC
Confidence 987654
No 24
>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed
Probab=45.05 E-value=1.4e+02 Score=23.59 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=35.9
Q ss_pred HHhcCCCCccCcccccCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceE
Q 030295 38 QMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGL 117 (179)
Q Consensus 38 eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~ 117 (179)
.=|++|||.|... . .| |. + +... ..+...-++....+...+....|-.+.... ..-+-+-.
T Consensus 42 kDLR~RGyvVk~G-~-----kf----g~------~-~~~~-~~~~s~ylV~Vl~E~~~is~~eL~~~vr~a-~svrK~lV 102 (124)
T PRK09539 42 VDLKQRGRKTIDG-I-----DE----IS------L-IIKD-KENKYTAMVLIVDENEKVSFKKILDKLHFS-KSMNLELY 102 (124)
T ss_pred hhHHhCCCeeccC-C-----ce----eE------E-EEec-CCCCceEEEEEecCCCccCHHHHHHHHHHH-hhccceeE
Confidence 3489999999763 1 22 11 0 1111 123333344445666789999998777766 43333333
Q ss_pred EEEEc
Q 030295 118 ILILQ 122 (179)
Q Consensus 118 IlV~q 122 (179)
+=|+.
T Consensus 103 LAVVD 107 (124)
T PRK09539 103 LAIVD 107 (124)
T ss_pred EEEEc
Confidence 33443
No 25
>COG1637 Predicted nuclease of the RecB family [DNA replication, recombination, and repair]
Probab=44.95 E-value=32 Score=30.27 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=38.7
Q ss_pred EEEEecCC--CccchhHHHHHHHHHhhccCCc--eEEEEEcCCCCHHHHHHhhccC
Q 030295 86 MLVVYLGT--EEIRTQAIRGLYGQILNKEALH--GLILILQSNMNTFARKEVLKFP 137 (179)
Q Consensus 86 i~VfF~~~--~~vgvk~Ir~~~~~~~~~eni~--~~IlV~q~~lt~~Akk~l~~~~ 137 (179)
+.|..--. .-..+.+++.|.+.+ .++... |||||.++ +|+.|++.+..-+
T Consensus 175 viiElKR~ka~~~Av~QL~RYv~~l-~~~~~~~VRGiLvAp~-it~~a~~ll~~~G 228 (253)
T COG1637 175 VIIELKRRKAGLSAVSQLKRYVELL-REDTGDKVRGILVAPS-ITEQARRLLEDEG 228 (253)
T ss_pred EEEEEecccCCchHHHHHHHHHHHc-ccccCceEEEEEEccc-ccHHHHHHHHHcC
Confidence 44555322 236789999999999 777777 99999877 9999999998754
No 26
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=42.99 E-value=20 Score=33.86 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=38.3
Q ss_pred ccccc--ccccccCCCchhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHH
Q 030295 9 ECITR--SSHVMEGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFR 60 (179)
Q Consensus 9 ~~~~~--~~~~~m~~~~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~ 60 (179)
+|+.+ -+.=++.+++.+..++|+.|..+=+-|..-|| |-..|+.+.+++|-
T Consensus 352 d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g~-vyKyDvSLpL~d~Y 404 (511)
T KOG1232|consen 352 DCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQKAGG-VYKYDVSLPLEDLY 404 (511)
T ss_pred HhhhhcccccceecCCHHHHHHHHHHHhccHHHHHhcCC-EEEeeccccHHHHH
Confidence 46655 22233456678999999999999999999994 56667888887774
No 27
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=41.45 E-value=67 Score=27.77 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCccchhHHHHHHHHHhh---ccCCceEEEEEc-CCCCHHHHHHhh
Q 030295 92 GTEEIRTQAIRGLYGQILN---KEALHGLILILQ-SNMNTFARKEVL 134 (179)
Q Consensus 92 ~~~~vgvk~Ir~~~~~~~~---~eni~~~IlV~q-~~lt~~Akk~l~ 134 (179)
+...+++..||.+++.+ . .++-.+.+||.. +.||..|..++-
T Consensus 69 ~~~~i~v~~ir~~~~~~-~~~p~~~~~kv~iI~~ad~m~~~a~naLL 114 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEV-NKKPYEGDKKVIIIYNSEKMTEQAQNAFL 114 (313)
T ss_pred cCCCCCHHHHHHHHHHH-hcCcccCCceEEEEechhhcCHHHHHHHH
Confidence 55679999999999966 3 355578888888 788987766543
No 28
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=41.28 E-value=82 Score=28.16 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCCCCeEEEEecCC--CccchhHHHHHHHHHh--hccCCceEEEEEc-CCCCHHHHHHhhcc----C-Cceeeee----
Q 030295 79 RSNPSKKMLVVYLGT--EEIRTQAIRGLYGQIL--NKEALHGLILILQ-SNMNTFARKEVLKF----P-FKVEIFY---- 144 (179)
Q Consensus 79 ~~dp~~~i~VfF~~~--~~vgvk~Ir~~~~~~~--~~eni~~~IlV~q-~~lt~~Akk~l~~~----~-~~ie~f~---- 144 (179)
.+.|+ +++++++. ..++|..||.+.+.+. ..++-.+.+||.+ +.||..|..++-.. + ..+=++-
T Consensus 71 g~HPD--~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 71 GTHPD--YYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred CCCCC--EEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 34554 66666765 4599999999999872 2456667777764 56998776655332 2 2221221
Q ss_pred eeecC---------CccccCHHHHHHHHH-HcCCCCC
Q 030295 145 HILQP---------KHEVLSAGERDKLMK-KYKIEGK 171 (179)
Q Consensus 145 H~lVP---------kH~~l~~eEk~~lL~-~y~i~~~ 171 (179)
+.|.| .-..+++++..+.|. ++++.+.
T Consensus 149 ~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~~~ 185 (334)
T PRK07993 149 ARLLATLRSRCRLHYLAPPPEQYALTWLSREVTMSQD 185 (334)
T ss_pred hhChHHHHhccccccCCCCCHHHHHHHHHHccCCCHH
Confidence 22222 123577888888775 4565543
No 29
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.94 E-value=14 Score=31.92 Aligned_cols=74 Identities=16% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCCCCCccccccccccc------c---C--CCchhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCCCCCCC
Q 030295 2 GGSGGGGECITRSSHVM------E---G--GGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDKCDLE 70 (179)
Q Consensus 2 ~~~~~~~~~~~~~~~~~------m---~--~~~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~~~r~ 70 (179)
|.+||||..|+.-..+. . + ....++.||.|--.|.+.+ --|.|.+-+.+++.++-+.+| .
T Consensus 5 ~~~~~~g~t~~~f~~Fy~evk~~ek~d~vLts~~qIeRllrpgstyfnL---NpfeVLqIdpev~~edikkry------R 75 (250)
T KOG1150|consen 5 GTRGGGGTTMEAFETFYQEVKSIEKRDSVLTSKQQIERLLRPGSTYFNL---NPFEVLQIDPEVTDEDIKKRY------R 75 (250)
T ss_pred cCCCCCCCcHHHHHHHHHHHHhhhhhhcccCcHHHHHHHhcCCcccccc---ChHHHHhcCCCCCHHHHHHHH------H
Confidence 45677877776622222 0 0 1133444444433332221 348888999999999999988 2
Q ss_pred ceEEEecCCCCCCC
Q 030295 71 SLRLCLPLRSNPSK 84 (179)
Q Consensus 71 ~L~~~~~~~~dp~~ 84 (179)
.|++.+.+..||++
T Consensus 76 klSilVHPDKN~Dd 89 (250)
T KOG1150|consen 76 KLSILVHPDKNPDD 89 (250)
T ss_pred hhheeecCCCCccc
Confidence 46777766666643
No 30
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=40.60 E-value=1.5e+02 Score=23.13 Aligned_cols=72 Identities=24% Similarity=0.268 Sum_probs=47.8
Q ss_pred HHHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccC
Q 030295 35 TVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEA 113 (179)
Q Consensus 35 Tv~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~en 113 (179)
-+.-||++.||.|..-=.+.+.++|.+.-.+ +|+ - +.+.+.. .-....++.+++.+ .+.+
T Consensus 22 iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d--~--------------V~lS~~~--~~~~~~~~~~~~~L-~~~~ 82 (137)
T PRK02261 22 ILDRALTEAGFEVINLGVMTSQEEFIDAAIETDAD--A--------------ILVSSLY--GHGEIDCRGLREKC-IEAG 82 (137)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC--E--------------EEEcCcc--ccCHHHHHHHHHHH-HhcC
Confidence 4456999999999886667889999876422 222 1 2222221 23567788888888 7777
Q ss_pred CceEEEEEcCCC
Q 030295 114 LHGLILILQSNM 125 (179)
Q Consensus 114 i~~~IlV~q~~l 125 (179)
.....+++.+.+
T Consensus 83 ~~~~~i~vGG~~ 94 (137)
T PRK02261 83 LGDILLYVGGNL 94 (137)
T ss_pred CCCCeEEEECCC
Confidence 766666677766
No 31
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=39.52 E-value=52 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=31.2
Q ss_pred chhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHH--HhhccC--CceeeeeeeecCCcc
Q 030295 97 RTQAIRGLYGQILNKEALHGLILILQSNMNTFARK--EVLKFP--FKVEIFYHILQPKHE 152 (179)
Q Consensus 97 gvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk--~l~~~~--~~ie~f~H~lVPkH~ 152 (179)
+.+++++.++.+ .+.+-...|+|.+++-.....+ ....++ ..+.+++|.|.|+..
T Consensus 87 d~~~i~~~~~~l-~~~~~~~~lviFPEGTr~~~~~~~~~~~~a~k~~~p~l~~vL~PR~~ 145 (193)
T cd07990 87 DEKTIKRQLKRL-KDSPEPFWLLIFPEGTRFTEEKKERSQEFAEKNGLPPLKHVLLPRTK 145 (193)
T ss_pred hHHHHHHHHHHH-hcCCCCcEEEEeCcccCCCHHHHHHHHHHHHHcCCCCcceeeCCCch
Confidence 456777777777 5544445677777764332222 111222 466777788888653
No 32
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=39.52 E-value=52 Score=28.22 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhh---ccC-Cceeeee--eeecCCcccc
Q 030295 96 IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVL---KFP-FKVEIFY--HILQPKHEVL 154 (179)
Q Consensus 96 vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~---~~~-~~ie~f~--H~lVPkH~~l 154 (179)
+.+..+-.+-..+ .+..+.-+||-++.. .|.+..+ +.+ .-|=-|- |.-||+|.+.
T Consensus 130 v~V~~~d~le~~v-~~~dv~iaiLtVPa~---~AQ~vad~Lv~aGVkGIlNFtPv~l~~pe~V~V 190 (211)
T COG2344 130 VPVYDLDDLEKFV-KKNDVEIAILTVPAE---HAQEVADRLVKAGVKGILNFTPVRLQVPEGVIV 190 (211)
T ss_pred eeeechHHHHHHH-HhcCccEEEEEccHH---HHHHHHHHHHHcCCceEEeccceEecCCCCcEE
Confidence 3345566666677 778999999988664 3333333 223 3333343 7778877654
No 33
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=38.95 E-value=86 Score=23.73 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=30.1
Q ss_pred CCeEEEEecCCC--ccchhHHHHHHHHHhhc-cCCceEEEEEcCCCCHHHHHHhhccC---CceeeeeeeecCC
Q 030295 83 SKKMLVVYLGTE--EIRTQAIRGLYGQILNK-EALHGLILILQSNMNTFARKEVLKFP---FKVEIFYHILQPK 150 (179)
Q Consensus 83 ~~~i~VfF~~~~--~vgvk~Ir~~~~~~~~~-eni~~~IlV~q~~lt~~Akk~l~~~~---~~ie~f~H~lVPk 150 (179)
++.+||+|+... .-....+=.+++-+ ++ =++++.++++...... ....+..+. |.+=.-.|-.+|.
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElA-ee~L~c~~vvic~~k~~~d-~~~Llr~l~~vGF~lv~~~~~~~~~ 94 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELA-EEKLGCSHVVICLDKNRPD-RASLLRTLMWVGFELVTPGHPSVPP 94 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHH-HHHH----EEEEE---SS--HHHHHHHHTTT--EEE----SS-SS
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHh-cCcCCCCEEEEEEECCchh-HHHhhhhcEeeccEecCCCCCCCCC
Confidence 667999998642 23344455555655 43 3899999999888877 556677766 3433333655555
No 34
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=38.59 E-value=45 Score=28.77 Aligned_cols=52 Identities=10% Similarity=0.002 Sum_probs=33.2
Q ss_pred eEEEEecCC--CccchhHHHHHHHHHhhccC--CceEEEEEcCCCCHHHHHHhhccC
Q 030295 85 KMLVVYLGT--EEIRTQAIRGLYGQILNKEA--LHGLILILQSNMNTFARKEVLKFP 137 (179)
Q Consensus 85 ~i~VfF~~~--~~vgvk~Ir~~~~~~~~~en--i~~~IlV~q~~lt~~Akk~l~~~~ 137 (179)
-+.|..--. ..=.+.++..|++.+..+.+ --|+|||.++ +|+.|+.++.+.+
T Consensus 149 ~VVIElKR~~a~~~aV~QL~rY~~~l~~~~~~~~VRGilvA~~-i~~~a~~ll~~~g 204 (228)
T PF01939_consen 149 LVVIELKRRRADRDAVEQLLRYVELLKRDPGLEPVRGILVAPS-ITPQARELLEDRG 204 (228)
T ss_dssp EEEEEE-SS-B-HHHHHHHHHHHHHHHHHH--S-EEEEEEES--B-HHHHHHHHHHT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHHHhhccCCCceeEEEECCC-CCHHHHHHHHHcC
Confidence 466666433 22347788888888833333 3489999977 9999999988765
No 35
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=37.25 E-value=1.1e+02 Score=27.42 Aligned_cols=53 Identities=11% Similarity=0.245 Sum_probs=35.1
Q ss_pred CCCCCeEEEEecC-CCccchhHHHHHHHHHh--hccCCceEEEEEc-CCCCHHHHHHhh
Q 030295 80 SNPSKKMLVVYLG-TEEIRTQAIRGLYGQIL--NKEALHGLILILQ-SNMNTFARKEVL 134 (179)
Q Consensus 80 ~dp~~~i~VfF~~-~~~vgvk~Ir~~~~~~~--~~eni~~~IlV~q-~~lt~~Akk~l~ 134 (179)
+.|+ ++++.+. ...+||..||.+++.+. ..++-.+.+||-+ +.||..|..++-
T Consensus 72 ~HPD--~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLL 128 (325)
T PRK06871 72 NHPD--FHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALL 128 (325)
T ss_pred CCCC--EEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHH
Confidence 4443 5555563 45799999999988862 2456667776653 568987776653
No 36
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=35.42 E-value=20 Score=31.30 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHcCCCCCCCcccc
Q 030295 154 LSAGERDKLMKKYKIEGKQVTILV 177 (179)
Q Consensus 154 l~~eEk~~lL~~y~i~~~qLP~i~ 177 (179)
|++||+++.|+.|+++++.||||-
T Consensus 244 l~~ee~~~fl~~~gi~es~l~riI 267 (274)
T cd01900 244 LDEEEAAEFLEELGLEESGLDRLI 267 (274)
T ss_pred CCHHHHHHHHHHcCCccccHHHHH
Confidence 789999999999999999999874
No 37
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=35.27 E-value=90 Score=27.53 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=52.3
Q ss_pred EEEEecCCCccchhHHHHHHHHHhh---ccCCceEEEEEc-CCCCHHHHHHh----hccC-Cceeeee----eeecC---
Q 030295 86 MLVVYLGTEEIRTQAIRGLYGQILN---KEALHGLILILQ-SNMNTFARKEV----LKFP-FKVEIFY----HILQP--- 149 (179)
Q Consensus 86 i~VfF~~~~~vgvk~Ir~~~~~~~~---~eni~~~IlV~q-~~lt~~Akk~l----~~~~-~~ie~f~----H~lVP--- 149 (179)
+...+++...+++..||.+++.+ . -++-.+.|||-. +.+|..|..++ ++.+ ..+=+|- +.+.|
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~-~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEF-SKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHH-hhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 44444556779999999999987 5 455567888877 56888665544 3323 2222221 22222
Q ss_pred ------CccccCHHHHHHHHHHcCCCCC
Q 030295 150 ------KHEVLSAGERDKLMKKYKIEGK 171 (179)
Q Consensus 150 ------kH~~l~~eEk~~lL~~y~i~~~ 171 (179)
.-..+++++-.+.|++.++.+.
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~gi~~~ 186 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEEGISES 186 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHcCCChH
Confidence 2234678888888887666543
No 38
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=34.57 E-value=1.5e+02 Score=26.41 Aligned_cols=50 Identities=18% Similarity=0.046 Sum_probs=34.3
Q ss_pred EEEEecCCC--ccchhHHHHHHHHHhh--ccCCceEEEEE-cCCCCHHHHHHhhc
Q 030295 86 MLVVYLGTE--EIRTQAIRGLYGQILN--KEALHGLILIL-QSNMNTFARKEVLK 135 (179)
Q Consensus 86 i~VfF~~~~--~vgvk~Ir~~~~~~~~--~eni~~~IlV~-q~~lt~~Akk~l~~ 135 (179)
+++.+|+.. .+++.+||.+.+.+.. .++-.+.+||. -+.||+.|..++-.
T Consensus 63 ~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK 117 (290)
T PRK05917 63 IHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLK 117 (290)
T ss_pred EEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHH
Confidence 666677764 3899999999988722 34556666655 45689877766543
No 39
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=33.39 E-value=1.4e+02 Score=25.86 Aligned_cols=51 Identities=10% Similarity=0.270 Sum_probs=39.0
Q ss_pred CCCCCCeEEEEec-----------CCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHH
Q 030295 79 RSNPSKKMLVVYL-----------GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFA 129 (179)
Q Consensus 79 ~~dp~~~i~VfF~-----------~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~A 129 (179)
.+++++.+||||. +.+.+..+.++..+..|..+....+++||+...-+.+-
T Consensus 102 ~s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~L~~m~~~~~y~~lv~~veaC~SGs~ 163 (256)
T PF01650_consen 102 NSTENDNVFIYFTGHGGPGFLKFPDGEELTADDLADALDKMHEKKRYKKLVFVVEACYSGSF 163 (256)
T ss_pred cCCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHHHHHHHhhCCcceEEEEEecccccch
Confidence 4677788999884 35567788999999999666777888989887765543
No 40
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=32.59 E-value=2.6e+02 Score=26.01 Aligned_cols=84 Identities=20% Similarity=0.348 Sum_probs=59.4
Q ss_pred CCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccC-CceeeeeeeecCCcc--ccCH
Q 030295 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-FKVEIFYHILQPKHE--VLSA 156 (179)
Q Consensus 80 ~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~-~~ie~f~H~lVPkH~--~l~~ 156 (179)
.+| ++-+|||.-.=.-...++-..+.+. .++++.+.-+....+++|.|.++|-+-+ .+|.-| |-|=|+ |.-.
T Consensus 133 ~nP-dk~VVF~avGFETTaP~~A~~i~~a-~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgf---i~PGHVs~I~G~ 207 (369)
T TIGR00075 133 ENP-DRKVVFFAIGFETTAPTTASTLLSA-KAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAF---LAPGHVSTIIGA 207 (369)
T ss_pred HCC-CCeEEEEecCchhccHHHHHHHHHH-HHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEE---EecCEEEEEecc
Confidence 444 4577999655445566666677777 7888988888888999999999987655 456555 445543 5556
Q ss_pred HHHHHHHHHcCC
Q 030295 157 GERDKLMKKYKI 168 (179)
Q Consensus 157 eEk~~lL~~y~i 168 (179)
+.=+.|-++|++
T Consensus 208 ~~y~~l~~~y~~ 219 (369)
T TIGR00075 208 KPYAPIAEKYKI 219 (369)
T ss_pred chhHHHHHHcCC
Confidence 666777777775
No 41
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.23 E-value=3.5e+02 Score=24.71 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=54.9
Q ss_pred CeEEEEecCC-Cc-c---chhHHHHHHHHHhhccCCceE--EEEEcCCCCH------------HHHHHhhccC---Ccee
Q 030295 84 KKMLVVYLGT-EE-I---RTQAIRGLYGQILNKEALHGL--ILILQSNMNT------------FARKEVLKFP---FKVE 141 (179)
Q Consensus 84 ~~i~VfF~~~-~~-v---gvk~Ir~~~~~~~~~eni~~~--IlV~q~~lt~------------~Akk~l~~~~---~~ie 141 (179)
-|++|+|..+ +. + ....|+.+-+.. ..+++.-. ||+++..+.. ....++.+++ |.+.
T Consensus 122 vK~Llyy~pD~~~~in~~k~a~vervg~eC-~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvD 200 (324)
T PRK12399 122 VKFLLYYDVDEPDEINEQKKAYIERIGSEC-VAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVD 200 (324)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHH-HHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCc
Confidence 4589999544 32 3 344455555555 56777665 3666655521 1223555664 6666
Q ss_pred eeeeeecC-----------CccccCHHHHHHHHHHcCCCCCCCccccc
Q 030295 142 IFYHILQP-----------KHEVLSAGERDKLMKKYKIEGKQVTILVK 178 (179)
Q Consensus 142 ~f~H~lVP-----------kH~~l~~eEk~~lL~~y~i~~~qLP~i~~ 178 (179)
++.=+ || .-.+.|.+|..+.+++..-- +.+|+|.-
T Consensus 201 VlKvE-vPvn~~~veG~~~~e~~yt~~eA~~~f~~~~~~-~~~P~i~L 246 (324)
T PRK12399 201 VLKVE-VPVNMKYVEGFAEGEVVYTKEEAAQHFKEQDAA-THLPYIYL 246 (324)
T ss_pred EEEEe-cccccccccccCcccccccHHHHHHHHHHHhhc-cCCCEEEE
Confidence 66521 23 24577999999988776554 78998853
No 42
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=30.99 E-value=40 Score=22.85 Aligned_cols=20 Identities=10% Similarity=0.393 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCCccCccccc
Q 030295 34 RTVLQMLNDRGYAVPNSELT 53 (179)
Q Consensus 34 rTv~eMl~DRGY~V~~~el~ 53 (179)
.-+++..+..||.++.+|+.
T Consensus 28 e~~~~lA~~~Gf~ft~~el~ 47 (64)
T TIGR03798 28 EDRVAIAKEAGFEFTGEDLK 47 (64)
T ss_pred HHHHHHHHHcCCCCCHHHHH
Confidence 45778899999999999883
No 43
>PF11513 TA0956: Thermoplasma acidophilum protein TA0956; InterPro: IPR021595 TA0956 is a protein from Thermoplasma acidophilum which currently has no known function however the structure has been determined. The protein has a two-layered alpha/beta-sandwich topology and is a putative Elongation factor 1-alpha binding motif. ; PDB: 2K24_A 2JMK_A.
Probab=30.57 E-value=1.5e+02 Score=22.77 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=34.5
Q ss_pred HHHHHHHhCC--C--CCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCc
Q 030295 56 LTEFRFTFGD--K--CDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALH 115 (179)
Q Consensus 56 l~~F~~~f~~--~--~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~ 115 (179)
+.+|.++|.- . |.-+..-|++-. ...+-+-|-|++-..==.+.|+++++.. .+.|++
T Consensus 45 lmdFIsryARTDEImPEDKTvGFvviN--~dKK~mSvsFsdideNmK~~i~ei~kky-kd~Gyk 105 (110)
T PF11513_consen 45 LMDFISRYARTDEIMPEDKTVGFVVIN--KDKKMMSVSFSDIDENMKNSIEEIVKKY-KDSGYK 105 (110)
T ss_dssp HHHHHHHH---S---TTSEEEEEEEEE--TTTTEEEEEE-S--CCHHHHHHHHHHHH-HCCS-E
T ss_pred HHHHHHHhhcccccCCCCceeEEEEEe--cCCeEEEEEecchhHHHHHHHHHHHHHh-hcCCce
Confidence 7999999953 2 555555555543 3345578999865332277888888888 666654
No 44
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=30.35 E-value=46 Score=22.84 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCccCcc
Q 030295 26 SYRYFLSRRTVLQMLNDRGYAVPNS 50 (179)
Q Consensus 26 ~~rL~rvrrTv~eMl~DRGY~V~~~ 50 (179)
...|..+.+.+-+.++++||..+.-
T Consensus 33 ~~~l~~~~~~l~~~y~~~GY~~s~v 57 (76)
T PF08479_consen 33 LADLQQLADALTNYYREKGYITSRV 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TT-EE
T ss_pred HHHHHHHHHHHHHHHHHcCceEEEE
Confidence 4668889999999999999998754
No 45
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.93 E-value=2.9e+02 Score=22.46 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=47.5
Q ss_pred HHHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccC
Q 030295 35 TVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEA 113 (179)
Q Consensus 35 Tv~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~en 113 (179)
=+-.+++..||.|..--.+.+.++|.+.-.+ +|+ -+. +.+.. .-....++.+++.+ .+.+
T Consensus 101 ~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d--~v~--------------lS~~~--~~~~~~~~~~i~~l-r~~~ 161 (201)
T cd02070 101 LVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPD--ILG--------------LSALM--TTTMGGMKEVIEAL-KEAG 161 (201)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC--EEE--------------Eeccc--cccHHHHHHHHHHH-HHCC
Confidence 3456889999999765567788999876422 222 122 22212 23467789999998 7776
Q ss_pred C--ceEEEEEcCCCCHH
Q 030295 114 L--HGLILILQSNMNTF 128 (179)
Q Consensus 114 i--~~~IlV~q~~lt~~ 128 (179)
. +--|+|-...+++.
T Consensus 162 ~~~~~~i~vGG~~~~~~ 178 (201)
T cd02070 162 LRDKVKVMVGGAPVNQE 178 (201)
T ss_pred CCcCCeEEEECCcCCHH
Confidence 6 44566666666664
No 46
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=29.47 E-value=1.7e+02 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|..+..+.++|++.||.|.+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D 31 (148)
T PRK05571 12 FELKEEIIEHLEELGHEVID 31 (148)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45677899999999999965
No 47
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=29.23 E-value=1.7e+02 Score=23.38 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|.-+..+.+.|+++||.|.+
T Consensus 11 ~~lK~~l~~~L~~~g~eV~D 30 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVID 30 (143)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 55678899999999999965
No 48
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=28.99 E-value=2.7e+02 Score=24.48 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccCC----------------------------ceeee---e--
Q 030295 98 TQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPF----------------------------KVEIF---Y-- 144 (179)
Q Consensus 98 vk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~~----------------------------~ie~f---~-- 144 (179)
+..+|++.+.+++-.--.|.|||++..++-.|+.....=++ .+..+ |
T Consensus 99 ~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdlws~~Q~~ 178 (245)
T KOG3035|consen 99 KDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDLWSKMQES 178 (245)
T ss_pred HHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeHHhhhhhc
Confidence 56788888888555566799999999998865442211011 11111 0
Q ss_pred ------------eeecCCccccCHHHHHHHHHHcCCCC--CCCc
Q 030295 145 ------------HILQPKHEVLSAGERDKLMKKYKIEG--KQVT 174 (179)
Q Consensus 145 ------------H~lVPkH~~l~~eEk~~lL~~y~i~~--~qLP 174 (179)
| |-|+--.+=-+|.-++|++...+. +.||
T Consensus 179 ~dw~~~~ltDGLH-lS~~G~~ivf~Ei~kvl~ea~~~~~~k~lp 221 (245)
T KOG3035|consen 179 DDWQTSCLTDGLH-LSPKGNKIVFDEILKVLKEAWPSPSPKNLP 221 (245)
T ss_pred ccHHHHHhcccee-eccccchhhHHHHHHHHHhccCCCCcccCC
Confidence 7 788887777888888888887776 5555
No 49
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.45 E-value=4.1e+02 Score=23.39 Aligned_cols=106 Identities=10% Similarity=0.125 Sum_probs=56.7
Q ss_pred cCCHHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCc-eEEEEEcCCCCHHHHH
Q 030295 53 TRSLTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALH-GLILILQSNMNTFARK 131 (179)
Q Consensus 53 ~~sl~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~-~~IlV~q~~lt~~Akk 131 (179)
..+++++++.+.+....-.|.+.+...+++ .+|.|+.++.. ..++.++... ....+. ...+|+-++. .|++
T Consensus 64 ~~~~~~l~~~l~~l~~~l~l~~~i~~~~~~-~kiavl~Sg~g----~nl~al~~~~-~~~~l~~~i~~visn~~--~~~~ 135 (289)
T PRK13010 64 AASVDTFRQEFQPVAEKFDMQWAIHPDGQR-PKVVIMVSKFD----HCLNDLLYRW-RMGELDMDIVGIISNHP--DLQP 135 (289)
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEecCCCC-eEEEEEEeCCC----ccHHHHHHHH-HCCCCCcEEEEEEECCh--hHHH
Confidence 456777777765444444566666555443 57988888764 3567777777 555442 3445555553 3444
Q ss_pred HhhccCCceeeeeeeecCCcccc-CHHHHHHHHHHcCCC
Q 030295 132 EVLKFPFKVEIFYHILQPKHEVL-SAGERDKLMKKYKIE 169 (179)
Q Consensus 132 ~l~~~~~~ie~f~H~lVPkH~~l-~~eEk~~lL~~y~i~ 169 (179)
.....+.-+.++.|. |. ..- .+++..++|+.|+++
T Consensus 136 ~A~~~gIp~~~~~~~--~~-~~~~~~~~~~~~l~~~~~D 171 (289)
T PRK13010 136 LAVQHDIPFHHLPVT--PD-TKAQQEAQILDLIETSGAE 171 (289)
T ss_pred HHHHcCCCEEEeCCC--cc-cccchHHHHHHHHHHhCCC
Confidence 444433233333442 21 111 123445677777765
No 50
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=27.33 E-value=3.4e+02 Score=22.10 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=50.5
Q ss_pred HHHHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhcc
Q 030295 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKE 112 (179)
Q Consensus 34 rTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~e 112 (179)
+=+..|++..||.|..--.+.+.++|.+..-+ +|+ -+.+++.. .-.+..++.+++.+ .+.
T Consensus 102 ~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd--~v~lS~~~----------------~~~~~~~~~~i~~l-~~~ 162 (197)
T TIGR02370 102 NIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPL--MLTGSALM----------------TTTMYGQKDINDKL-KEE 162 (197)
T ss_pred HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCC--EEEEcccc----------------ccCHHHHHHHHHHH-HHc
Confidence 44567999999999987778889999876522 232 22323211 12355678899998 777
Q ss_pred CCc--eEEEEEcCCCCHHH
Q 030295 113 ALH--GLILILQSNMNTFA 129 (179)
Q Consensus 113 ni~--~~IlV~q~~lt~~A 129 (179)
+.. --|+|-...+++.-
T Consensus 163 ~~~~~v~i~vGG~~~~~~~ 181 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVTQDW 181 (197)
T ss_pred CCCCCCEEEEEChhcCHHH
Confidence 664 34667666677643
No 51
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.25 E-value=20 Score=24.33 Aligned_cols=13 Identities=46% Similarity=0.795 Sum_probs=8.8
Q ss_pred CCCCCCCcccccc
Q 030295 1 MGGSGGGGECITR 13 (179)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (179)
|.||||||-|..=
T Consensus 53 ~sGsG~G~~v~~l 65 (85)
T PF08544_consen 53 MSGSGGGPTVFAL 65 (85)
T ss_dssp EETTSSSSEEEEE
T ss_pred cCCCCCCCeEEEE
Confidence 3578888777654
No 52
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=27.24 E-value=1.9e+02 Score=25.53 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=50.4
Q ss_pred EEEEecCCCccchhHHHHHHHHHhhc---cCCceEEEEEc-CCCCHHHHHHhhcc----C-Cceeeee------------
Q 030295 86 MLVVYLGTEEIRTQAIRGLYGQILNK---EALHGLILILQ-SNMNTFARKEVLKF----P-FKVEIFY------------ 144 (179)
Q Consensus 86 i~VfF~~~~~vgvk~Ir~~~~~~~~~---eni~~~IlV~q-~~lt~~Akk~l~~~----~-~~ie~f~------------ 144 (179)
++++.++...+++..||.+...+ .. ++-.+.+||-+ +.||+.|..++-.. + ..+=++-
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~-~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~ 152 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNF-SQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIK 152 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHH-hhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHH
Confidence 66667777789999999998887 43 44556666653 55888776655332 2 2222221
Q ss_pred ----eeecCCccccCHHHHHHHHHHcCCCCC
Q 030295 145 ----HILQPKHEVLSAGERDKLMKKYKIEGK 171 (179)
Q Consensus 145 ----H~lVPkH~~l~~eEk~~lL~~y~i~~~ 171 (179)
+.-.|. ++++..++|++.++...
T Consensus 153 SRcq~i~f~~----~~~~~~~~L~~~g~~~~ 179 (290)
T PRK07276 153 SRTQIFHFPK----NEAYLIQLLEQKGLLKT 179 (290)
T ss_pred HcceeeeCCC----cHHHHHHHHHHcCCChH
Confidence 322343 47777788887776543
No 53
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.08 E-value=72 Score=22.93 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=35.3
Q ss_pred CCceEEEEEcCCCCHHHHHHhhccC--------Cceeeee--eeecCCccc-cCHHHHHHHHHHcCC
Q 030295 113 ALHGLILILQSNMNTFARKEVLKFP--------FKVEIFY--HILQPKHEV-LSAGERDKLMKKYKI 168 (179)
Q Consensus 113 ni~~~IlV~q~~lt~~Akk~l~~~~--------~~ie~f~--H~lVPkH~~-l~~eEk~~lL~~y~i 168 (179)
|+..|++|..+ |.-++.|-.+. +.||.++ |-+|-+|.+ +=+.|.+.+|++-..
T Consensus 3 na~KGvlV~cD---p~~kqlilnmd~sm~~~skfii~eLDdthLfV~p~~vemvk~~le~~le~n~y 66 (71)
T KOG3451|consen 3 NAKKGVLVTCD---PAFKQLILNMDDSMQLGSKFIIEELDDTHLFVNPSIVEMVKNELERILENNNY 66 (71)
T ss_pred ccccceEEecC---hhHHHHhhhccccCCCCCCeeEEEeccceeeecHHHHHHHHHHHHHHHHhcCC
Confidence 56778888766 45677765553 6788886 988877654 445666666665443
No 54
>PF11985 DUF3486: Protein of unknown function (DUF3486); InterPro: IPR021874 This entry is represented by Bacteriophage Mu, Gp27. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.03 E-value=40 Score=27.25 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCCCccCcccccCCHHHHHHHh
Q 030295 32 SRRTVLQMLNDRGYAVPNSELTRSLTEFRFTF 63 (179)
Q Consensus 32 vrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f 63 (179)
+|..+.+||+|+||.-.+ + +++|.+..
T Consensus 14 ir~~l~~~L~~~~~t~~e--i---~~~~~~~~ 40 (180)
T PF11985_consen 14 IREWLDQMLRDGGFTQYE--I---LAEWLEEL 40 (180)
T ss_pred HHHHHHHHHHhCCCChHH--H---HHHHHHhh
Confidence 777899999999876543 2 35555555
No 55
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=25.54 E-value=1.5e+02 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=28.7
Q ss_pred ceeeee-eeecCCccccCHHHHHHHHHHcCCCCCC
Q 030295 139 KVEIFY-HILQPKHEVLSAGERDKLMKKYKIEGKQ 172 (179)
Q Consensus 139 ~ie~f~-H~lVPkH~~l~~eEk~~lL~~y~i~~~q 172 (179)
+|++.. |+++++-+.+|+++ ..||++++|++..
T Consensus 148 ~I~i~~~~~v~~~G~~v~~~~-a~lL~~LgI~p~~ 181 (330)
T PRK04019 148 KIVIKKDTVVAKAGEVISPEL-ANVLQKLGIKPIE 181 (330)
T ss_pred EEEEecCeEEecCCCCcCHHH-HHHHHHcCCCHHH
Confidence 777775 99999999999999 9999999998643
No 56
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.27 E-value=32 Score=21.90 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=15.6
Q ss_pred HHHHHHhcCCCCccCcccc
Q 030295 34 RTVLQMLNDRGYAVPNSEL 52 (179)
Q Consensus 34 rTv~eMl~DRGY~V~~~el 52 (179)
.-+....++.||.++.+|+
T Consensus 30 ~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 30 EEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHHHcCCCCCHHHh
Confidence 4467788999999998876
No 57
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=25.15 E-value=4.3e+02 Score=24.55 Aligned_cols=106 Identities=23% Similarity=0.339 Sum_probs=68.6
Q ss_pred cCCHHHHHHHhCCCCCCCceEEEecC-------CCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCCC
Q 030295 53 TRSLTEFRFTFGDKCDLESLRLCLPL-------RSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNM 125 (179)
Q Consensus 53 ~~sl~~F~~~f~~~~~r~~L~~~~~~-------~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~l 125 (179)
..||.+-++. |. +.+++.+. .++|+ +-+|||.-.=.-...++-..+.++ .++++++.-+.+..++
T Consensus 99 ~~SL~~ara~-Ga-----dVriVYSpldAl~iA~~nP~-k~vVF~avGFETTaP~~A~~i~~A-~~~~~~Nfsvl~~hkl 170 (364)
T PRK15062 99 KGSLLEAKAE-GA-----DVRIVYSPLDALKIARENPD-KEVVFFAIGFETTAPATAATLLQA-KAEGLKNFSVLSSHKL 170 (364)
T ss_pred cCCHHHHHhC-CC-----CEEEEeCHHHHHHHHHHCCC-CeEEEEecCchhccHHHHHHHHHH-HHcCCCCEEEEEeccc
Confidence 3466666654 22 23444433 34554 467898655444555666666777 7889999988889999
Q ss_pred CHHHHHHhhccC-CceeeeeeeecCCcc--ccCHHHHHHHHHHcCCC
Q 030295 126 NTFARKEVLKFP-FKVEIFYHILQPKHE--VLSAGERDKLMKKYKIE 169 (179)
Q Consensus 126 t~~Akk~l~~~~-~~ie~f~H~lVPkH~--~l~~eEk~~lL~~y~i~ 169 (179)
+|.|.+++-+-. ..|+-| |-|=|+ |.-.+.=+.|-++|++.
T Consensus 171 ~PPa~~~ll~~~~~~idgf---i~PGHVstI~G~~~y~~l~~~y~~P 214 (364)
T PRK15062 171 VPPAMRALLEDPELRIDGF---IAPGHVSTIIGTEPYEFLAEEYGIP 214 (364)
T ss_pred cHHHHHHHHcCCCCCccEE---EecCEeEEEeccchhHHHHHHcCCC
Confidence 999999987655 466666 445443 55566666777777753
No 58
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=25.10 E-value=88 Score=26.96 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=33.8
Q ss_pred EEEEEcCCCCHHHHHHhhccCCceeeeeeeecCCccc-cCHHHHHHHH
Q 030295 117 LILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHEV-LSAGERDKLM 163 (179)
Q Consensus 117 ~IlV~q~~lt~~Akk~l~~~~~~ie~f~H~lVPkH~~-l~~eEk~~lL 163 (179)
.+|++...-....+++|.+..+.++.-++..+|+..+ |++|+.+.+.
T Consensus 171 ~~v~~~~~~~~~v~~~L~~~g~~i~~sei~~~P~~~v~l~~e~~~~~~ 218 (238)
T TIGR01033 171 FEVYTAPEELEKVKEALEAKGFPIESAEITMIPLTTVDLDDEQAEKLL 218 (238)
T ss_pred EEEEECHHHHHHHHHHHHHcCCCceeeEEEEecCCCcccCHHHHHHHH
Confidence 4566666666778888888778888888999997664 5666555443
No 59
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=24.84 E-value=3.5e+02 Score=22.94 Aligned_cols=69 Identities=7% Similarity=0.061 Sum_probs=48.0
Q ss_pred EEEecCC-CccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccCCceeeeeeeecCCccccCHHHHHHHHHH
Q 030295 87 LVVYLGT-EEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKK 165 (179)
Q Consensus 87 ~VfF~~~-~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~~~ie~f~H~lVPkH~~l~~eEk~~lL~~ 165 (179)
+||++.. ..|...+.+.+...+ .. + ..+-|+.+.-.......+..++ +...| =|--.++++.++|-++
T Consensus 28 ~If~~~SpR~Vs~~~a~~i~~~v-~~--~-~~VgVf~n~~~~~i~~i~~~~~--ld~VQ-----lHG~e~~~~~~~l~~~ 96 (208)
T COG0135 28 FIFVPKSPRYVSPEQAREIASAV-PK--V-KVVGVFVNESIEEILEIAEELG--LDAVQ-----LHGDEDPEYIDQLKEE 96 (208)
T ss_pred EEEcCCCCCcCCHHHHHHHHHhC-CC--C-CEEEEECCCCHHHHHHHHHhcC--CCEEE-----ECCCCCHHHHHHHHhh
Confidence 5566534 579999999999987 43 3 3777888876666777777655 22233 2455788888888887
Q ss_pred c
Q 030295 166 Y 166 (179)
Q Consensus 166 y 166 (179)
|
T Consensus 97 ~ 97 (208)
T COG0135 97 L 97 (208)
T ss_pred c
Confidence 7
No 60
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=24.26 E-value=1.2e+02 Score=28.12 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhhccCCceEEEEEcCC--CCHHHHHHhhccC----Cceeeee--eeecCCcc--ccCHHHHHHHHHHcC
Q 030295 98 TQAIRGLYGQILNKEALHGLILILQSN--MNTFARKEVLKFP----FKVEIFY--HILQPKHE--VLSAGERDKLMKKYK 167 (179)
Q Consensus 98 vk~Ir~~~~~~~~~eni~~~IlV~q~~--lt~~Akk~l~~~~----~~ie~f~--H~lVPkH~--~l~~eEk~~lL~~y~ 167 (179)
-..||+++.-+ ...+.+|||+... .-|+.|..+--.. ..|=+|. --+|-.-+ -|=+.|..+||..|.
T Consensus 86 aDYvKNMItgA---aqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~ 162 (394)
T COG0050 86 ADYVKNMITGA---AQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG 162 (394)
T ss_pred HHHHHHHhhhH---HhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence 34666666654 4457889998543 3456666554333 2454554 33553333 344788999999999
Q ss_pred CCCCCCccccc
Q 030295 168 IEGKQVTILVK 178 (179)
Q Consensus 168 i~~~qLP~i~~ 178 (179)
..-...|.|..
T Consensus 163 f~gd~~Pii~g 173 (394)
T COG0050 163 FPGDDTPIIRG 173 (394)
T ss_pred CCCCCcceeec
Confidence 99999998763
No 61
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=23.82 E-value=50 Score=23.96 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=33.8
Q ss_pred hccCCceEEEEEcCCCCHHHHHHhhccC------------C-ceeeeee-eecCCccccCHHHHHHHHHHcCCCCCCC
Q 030295 110 NKEALHGLILILQSNMNTFARKEVLKFP------------F-KVEIFYH-ILQPKHEVLSAGERDKLMKKYKIEGKQV 173 (179)
Q Consensus 110 ~~eni~~~IlV~q~~lt~~Akk~l~~~~------------~-~ie~f~H-~lVPkH~~l~~eEk~~lL~~y~i~~~qL 173 (179)
++.+.=++|.| ++......|+.++.+. + +++-=.+ --+.|+ |+++|+++|++++++++..+
T Consensus 6 ~~~g~Vkai~v-p~~~~~~srk~id~l~~~ak~~ga~gL~~ikv~~~~~~s~i~kf--l~e~~~~~l~~~~~a~~GD~ 80 (95)
T PF02938_consen 6 KKGGSVKAIVV-PGGAAKLSRKQIDKLEEFAKKFGAKGLAWIKVEEGELKSPIAKF--LSEEELKALIERLGAKPGDL 80 (95)
T ss_dssp HTTSEEEEEEE-TTG-TTTTHCCCCCCCCHHHHCCHCHCCCEEESTCEEECTTCCC--CHHHHHHHHHHHTT--TTEE
T ss_pred hCCCEEEEEEe-CCccccCCHHHHHHHHHHHHHhCCCCceeeeEcCCcccCccccc--CCHHHHHHHHHHhCCCCCCE
Confidence 55566666644 5543444455555553 1 2222111 123455 89999999999999987653
No 62
>PRK00024 hypothetical protein; Reviewed
Probab=23.69 E-value=4.5e+02 Score=22.19 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=56.0
Q ss_pred HHHHHHHhCCCCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCC---CCHHHHH-
Q 030295 56 LTEFRFTFGDKCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSN---MNTFARK- 131 (179)
Q Consensus 56 l~~F~~~f~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~---lt~~Akk- 131 (179)
++-|...|++ .+++.+.+.+-...+-=-..-+.|-+.-.-..-..|.++..+ ...|....|++...+ ++|+...
T Consensus 110 ~~~l~~~l~~-~~~E~f~vl~Ld~~~~li~~~~i~~Gt~~~~~v~pRei~~~A-l~~~A~~iIl~HNHPSG~~~PS~~D~ 187 (224)
T PRK00024 110 ADYLMAELRD-EEQEHFVVLFLDTKNRVIADEELFIGTLNSSIVHPREIVKRA-LKLNAAALILAHNHPSGDPEPSQADI 187 (224)
T ss_pred HHHHHHHccC-CCceEEEEEEECCCCCEeeEEEeeeecCCeEEEcHHHHHHHH-HHhhccceEEEecCCCCCCCCCHHHH
Confidence 4555666655 346777766644333222223334444333345568888888 788888888776432 3443211
Q ss_pred ----HhhccC--CceeeeeeeecCCccccC
Q 030295 132 ----EVLKFP--FKVEIFYHILQPKHEVLS 155 (179)
Q Consensus 132 ----~l~~~~--~~ie~f~H~lVPkH~~l~ 155 (179)
.+.+.. ..|++++|..|=+....|
T Consensus 188 ~~T~~l~~a~~~l~I~llDHiIv~~~~~~S 217 (224)
T PRK00024 188 LITKRLKEAGELLGIRLLDHIIIGDGEYVS 217 (224)
T ss_pred HHHHHHHHHHHhCCCEEeeEEEEcCCcEEE
Confidence 222222 578999999887665544
No 63
>PRK04247 hypothetical protein; Provisional
Probab=23.67 E-value=1.4e+02 Score=25.94 Aligned_cols=63 Identities=10% Similarity=-0.005 Sum_probs=42.2
Q ss_pred ceEEEecCCCCCCCeEEEEecCC--CccchhHHHHHHHHHhhcc--CCceEEEEEcCCCCHHHHHHhhccC
Q 030295 71 SLRLCLPLRSNPSKKMLVVYLGT--EEIRTQAIRGLYGQILNKE--ALHGLILILQSNMNTFARKEVLKFP 137 (179)
Q Consensus 71 ~L~~~~~~~~dp~~~i~VfF~~~--~~vgvk~Ir~~~~~~~~~e--ni~~~IlV~q~~lt~~Akk~l~~~~ 137 (179)
.+-+.+...+. .-++|..--. ..-.+.++..|.+.+ .++ .-=|||||.|+ +|+.|+..+.+-+
T Consensus 161 ~IDila~D~~G--~lViVEvKrr~~~~~~V~Ql~rY~~~~-~~~~~~~VRGilvAp~-i~~~A~~ll~~~G 227 (238)
T PRK04247 161 IIDILGRDKDG--NLVVLELKRRRAGLSAVSQLKRYVEAL-RELHGDKVRGILVAPS-ITDRARRLLEKEG 227 (238)
T ss_pred ceeEEEECCCC--CEEEEEEEEccCChhHHHHHHHHHHHH-HhhcCCCcEEEEECCc-CCHHHHHHHHHcC
Confidence 45556543321 3355665332 345688899999998 433 33589999866 9999999998766
No 64
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.78 E-value=3.7e+02 Score=22.41 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhcc
Q 030295 34 RTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKE 112 (179)
Q Consensus 34 rTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~e 112 (179)
+=+--||+.+||.|..-=.+.+.++|.+...+ +|+ -+.+++ . -.-.+..++.+++.+ .+.
T Consensus 106 ~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~--~V~lS~--------------~--~~~~~~~~~~~i~~L-~~~ 166 (213)
T cd02069 106 NLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKAD--IIGLSG--------------L--LVPSLDEMVEVAEEM-NRR 166 (213)
T ss_pred HHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEcc--------------c--hhccHHHHHHHHHHH-Hhc
Confidence 44567899999999887778889999877532 232 222222 1 124577889999999 777
Q ss_pred CCceEEEEEcCCCCHHHH
Q 030295 113 ALHGLILILQSNMNTFAR 130 (179)
Q Consensus 113 ni~~~IlV~q~~lt~~Ak 130 (179)
+.+--|+|-....|....
T Consensus 167 ~~~~~i~vGG~~~~~~~~ 184 (213)
T cd02069 167 GIKIPLLIGGAATSRKHT 184 (213)
T ss_pred CCCCeEEEEChhcCHHHH
Confidence 776566666666665433
No 65
>PF13864 Enkurin: Calmodulin-binding
Probab=22.40 E-value=23 Score=26.08 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=18.8
Q ss_pred ecCCccccCHHHHHHHHHHcCCC
Q 030295 147 LQPKHEVLSAGERDKLMKKYKIE 169 (179)
Q Consensus 147 lVPkH~~l~~eEk~~lL~~y~i~ 169 (179)
.-|-|..|+++|+.++|+..+-+
T Consensus 30 ~~~~~~~l~eeER~~lL~~Lk~~ 52 (98)
T PF13864_consen 30 CPPGMRLLSEEERQELLEGLKKN 52 (98)
T ss_pred CccccccCCHHHHHHHHHHHHHH
Confidence 45789999999999999876543
No 66
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=22.29 E-value=3e+02 Score=22.20 Aligned_cols=20 Identities=10% Similarity=0.506 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcC--CCCccCc
Q 030295 30 FLSRRTVLQMLND--RGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~D--RGY~V~~ 49 (179)
|.-+..+.+.|++ +||.|.+
T Consensus 14 ~~lK~~l~~~L~~~~~g~eV~D 35 (151)
T PTZ00215 14 FDLKNEIIDYIKNKGKEYKIED 35 (151)
T ss_pred HHHHHHHHHHHHhccCCCEEEE
Confidence 5567788999999 9999975
No 67
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=22.10 E-value=2.6e+02 Score=23.13 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|-....+.+.|++.||.|.+
T Consensus 12 ~~lK~~l~~~L~~~G~eV~D 31 (171)
T PRK08622 12 TDEKMAVSDYLKSKGHEVID 31 (171)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45678899999999999965
No 68
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=21.88 E-value=3.2e+02 Score=23.86 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=27.9
Q ss_pred cchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHh
Q 030295 96 IRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEV 133 (179)
Q Consensus 96 vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l 133 (179)
...+.+.++.+.. ..++-.....|.|.-+||.+...+
T Consensus 199 ~~~~~l~~~L~~~-l~~~~~~~~~v~Q~ilTP~~~~i~ 235 (290)
T cd08616 199 TDPKKLIQFLETT-LKERRPPGFHVSQGILTPDVKTIL 235 (290)
T ss_pred CCHHHHHHHHHHh-hhcCCCCCEEEEEEEEcCcccchh
Confidence 4677788888887 556666688899999999876654
No 69
>PF04002 RadC: RadC-like JAB domain; InterPro: IPR001405 This family was named initially with reference to the Escherichia coli radC102 mutation which suggested that RadC was involved in repair of DNA lesions []. However the relevant mutation has subsequently been shown to be in recG, not radC []. In addition all attempts to characterise a radiation-related function for RadC in Streptococcus pneumoniae failed, suggesting that it is not involved in repair of DNA lesions, in recombination during transformation, in gene conversion, nor in mismatch repair [].; PDB: 2QLC_A.
Probab=21.60 E-value=3.6e+02 Score=20.35 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCC---CCHHHHH-----HhhccC-
Q 030295 67 CDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSN---MNTFARK-----EVLKFP- 137 (179)
Q Consensus 67 ~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~---lt~~Akk-----~l~~~~- 137 (179)
.+++.+.+.+-...+---...+.|.+...-..-..|.++..+ ...|....|++-..+ ++|++.. .+....
T Consensus 19 ~~~E~~~~l~Ld~~~~li~~~~v~~G~~~~~~v~~R~I~~~a-l~~~A~~vIl~HNHPsG~~~PS~~D~~~T~~L~~~~~ 97 (123)
T PF04002_consen 19 LDQEQFRVLYLDSKNRLIGDEVVSEGTIDSAPVDPREIFRRA-LRLNASSVILAHNHPSGDPEPSDADIALTRRLKKAAR 97 (123)
T ss_dssp TTS-EEEEEEE-TTSBEEEEEEEEESTT-GGGCSHHHHHHHH-HHTT-SEEEEEEE-TTS--S--HHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCCCcEEEEEEecccCCCcccccHHHHHHHH-HhhCCceEEEEEEcCCCCCCCCHhHHHHHHHHHHHHH
Confidence 346777766643333212233444454333344688899998 788998888776432 3454322 122222
Q ss_pred -CceeeeeeeecCCccccC
Q 030295 138 -FKVEIFYHILQPKHEVLS 155 (179)
Q Consensus 138 -~~ie~f~H~lVPkH~~l~ 155 (179)
..|++++|..|-.....|
T Consensus 98 ~l~I~llDHiIv~~~~~~S 116 (123)
T PF04002_consen 98 LLGIELLDHIIVGDGGYFS 116 (123)
T ss_dssp HHT-EEEEEEEEESSEEEE
T ss_pred HcCCeeeeEEEEeCCcEEE
Confidence 589999999886554443
No 70
>PRK03094 hypothetical protein; Provisional
Probab=21.35 E-value=42 Score=24.58 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.6
Q ss_pred HHHHHhcCCCCccCc
Q 030295 35 TVLQMLNDRGYAVPN 49 (179)
Q Consensus 35 Tv~eMl~DRGY~V~~ 49 (179)
-|.|.|+.|||.|-+
T Consensus 12 ~i~~~L~~~GYeVv~ 26 (80)
T PRK03094 12 DVQQALKQKGYEVVQ 26 (80)
T ss_pred HHHHHHHHCCCEEEe
Confidence 367899999999965
No 71
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=5.3e+02 Score=22.10 Aligned_cols=79 Identities=14% Similarity=0.107 Sum_probs=56.2
Q ss_pred EEEEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhcc----CCceeeee-----------------
Q 030295 86 MLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKF----PFKVEIFY----------------- 144 (179)
Q Consensus 86 i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~----~~~ie~f~----------------- 144 (179)
-++|+-+|+-+-...+.++...+ .+++++.++ ++.+-+++.+...+..+ .+.+..+.
T Consensus 86 gvt~SGGEP~~q~e~~~~~~~~a-ke~Gl~~~l-~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~ 163 (260)
T COG1180 86 GVTFSGGEPTLQAEFALDLLRAA-KERGLHVAL-DTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLE 163 (260)
T ss_pred EEEEECCcchhhHHHHHHHHHHH-HHCCCcEEE-EcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHH
Confidence 55666778889999999999999 888887654 99999999877434332 12232222
Q ss_pred ---------------eeecCCccccCHHHHHHHHHHcC
Q 030295 145 ---------------HILQPKHEVLSAGERDKLMKKYK 167 (179)
Q Consensus 145 ---------------H~lVPkH~~l~~eEk~~lL~~y~ 167 (179)
+.+||.- ..+++|.+++.+...
T Consensus 164 ~~~~l~~~g~~ve~r~lviPg~-~d~~e~i~~i~~~i~ 200 (260)
T COG1180 164 NLELLADLGVHVEIRTLVIPGY-NDDEEEIRELAEFIA 200 (260)
T ss_pred HHHHHHcCCCeEEEEEEEECCC-CCCHHHHHHHHHHHH
Confidence 6666654 677888888877665
Done!