Query 030295
Match_columns 179
No_of_seqs 146 out of 329
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 1.1E-56 3.7E-61 374.8 7.3 160 19-179 1-176 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 3.7E-55 1.3E-59 366.6 10.0 156 23-179 6-181 (215)
3 1hmj_A RPB5, protein (subunit 99.5 1.7E-15 5.7E-20 108.9 2.3 39 141-179 2-40 (78)
4 1eik_A RNA polymerase subunit 99.5 2.2E-15 7.5E-20 108.1 2.8 40 140-179 3-42 (77)
5 4ayb_H DNA-directed RNA polyme 99.5 1.5E-14 5.3E-19 105.2 2.4 42 138-179 7-48 (84)
6 2jmk_A Hypothetical protein TA 64.4 20 0.00067 26.4 6.2 57 56-115 46-106 (111)
7 4f0q_A Restriction endonucleas 62.6 10 0.00034 34.7 5.3 62 91-166 360-421 (456)
8 2yxb_A Coenzyme B12-dependent 58.9 11 0.00037 28.8 4.2 83 36-137 38-121 (161)
9 1y88_A Hypothetical protein AF 49.2 30 0.001 27.9 5.6 59 106-165 87-159 (199)
10 3ezx_A MMCP 1, monomethylamine 43.0 61 0.0021 25.7 6.5 77 36-129 112-191 (215)
11 3lqv_A PRE-mRNA branch site pr 37.4 94 0.0032 21.0 7.5 90 80-173 5-114 (115)
12 2i7u_A Four-alpha-helix bundle 34.1 10 0.00035 25.0 0.4 10 2-11 29-38 (62)
13 1wd5_A Hypothetical protein TT 33.5 1.5E+02 0.0053 22.7 7.4 71 92-165 127-205 (208)
14 3s5p_A Ribose 5-phosphate isom 26.0 83 0.0028 24.8 4.5 20 30-49 33-52 (166)
15 1y80_A Predicted cobalamin bin 25.8 1.4E+02 0.0049 22.8 5.9 74 35-127 107-183 (210)
16 3he8_A Ribose-5-phosphate isom 25.4 1.3E+02 0.0045 23.1 5.5 20 30-49 12-31 (149)
17 3ph3_A Ribose-5-phosphate isom 25.0 1.3E+02 0.0045 23.7 5.5 20 30-49 32-51 (169)
18 4f3q_A Transcriptional regulat 24.5 64 0.0022 26.9 3.7 49 117-165 174-223 (247)
19 1mw7_A Hypothetical protein HP 23.9 77 0.0026 26.3 4.1 48 118-165 174-222 (240)
20 1o1x_A Ribose-5-phosphate isom 23.3 1.5E+02 0.0051 23.0 5.4 20 30-49 24-43 (155)
21 1ydl_A TFIIH, general transcri 23.2 44 0.0015 23.4 2.1 40 110-152 8-57 (79)
22 3dtg_A Branched-chain amino ac 23.1 25 0.00085 30.5 1.0 27 33-61 277-303 (372)
23 2lz1_A Nuclear factor erythroi 22.5 18 0.00063 26.1 0.0 26 152-177 41-66 (90)
24 3l9k_W Dynein intermediate cha 22.4 41 0.0014 20.5 1.6 11 154-164 1-11 (38)
25 1ccw_A Protein (glutamate muta 21.4 34 0.0012 25.1 1.3 71 36-125 23-94 (137)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-56 Score=374.81 Aligned_cols=160 Identities=23% Similarity=0.371 Sum_probs=152.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCCC---CCCCceEEEecCCCCC-CCeEEEEecCCC
Q 030295 19 EGGGSLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGDK---CDLESLRLCLPLRSNP-SKKMLVVYLGTE 94 (179)
Q Consensus 19 m~~~~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~~---~~r~~L~~~~~~~~dp-~~~i~VfF~~~~ 94 (179)
|+.++.|++||||+|||++|||+||||.|+++|+++|+++|+++||+. |+|++|+|++.+.+|| +++|+|||++++
T Consensus 1 m~~~~~e~~rl~rirrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~ 80 (210)
T 3h0g_E 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP 80 (210)
T ss_dssp ---CTHHHHHHHGGGSSSSSTTTTTTEECCTTTTSCCHHHHHHHSCCSSSSCCCSSCCCEEEESSCSSCCCEEEECCCSS
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCccCHHHHhCCHHHHHHHhcccCCCCCchheEEEEEcCCCCccCeEEEEECCCC
Confidence 456788999999999999999999999999999999999999999875 8899999999999999 999999999999
Q ss_pred ccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccC--Cceeeee----------eeecCCccccCHHHHHHH
Q 030295 95 EIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP--FKVEIFY----------HILQPKHEVLSAGERDKL 162 (179)
Q Consensus 95 ~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~--~~ie~f~----------H~lVPkH~~l~~eEk~~l 162 (179)
+||+|+||.|+++| .++|++++|||+|+++||+|++++.+++ ++||+|+ |+|||+|++||+||+++|
T Consensus 81 ~vgvk~Ir~~~~~~-~~en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVPkH~~ls~eE~~~l 159 (210)
T 3h0g_E 81 SVGIKEMRTFVHTL-GDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKEL 159 (210)
T ss_dssp SCCTTTTGGGTHHH-HHTTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBCCEECCCHHHHHHH
T ss_pred ccChHHHHHHHHHH-HHcCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccCcEEEcCHHHHHHH
Confidence 99999999999999 9999999999999999999999999997 7999997 999999999999999999
Q ss_pred HHHcCCCCCCCcccccC
Q 030295 163 MKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 163 L~~y~i~~~qLP~i~~~ 179 (179)
|++|+++++|||||+.+
T Consensus 160 L~~y~i~~~qLP~I~~~ 176 (210)
T 3h0g_E 160 LDRYKLRETQLPRIQLA 176 (210)
T ss_dssp HHHTCCCTTTSCCCCTT
T ss_pred HHHcCCCHHHCCccccc
Confidence 99999999999999864
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=3.7e-55 Score=366.56 Aligned_cols=156 Identities=24% Similarity=0.395 Sum_probs=151.6
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCccCcccccCCHHHHHHHhCC---CCCCCceEEEecCCCCCCCeE------EEEecCC
Q 030295 23 SLESYRYFLSRRTVLQMLNDRGYAVPNSELTRSLTEFRFTFGD---KCDLESLRLCLPLRSNPSKKM------LVVYLGT 93 (179)
Q Consensus 23 ~~e~~rL~rvrrTv~eMl~DRGY~V~~~el~~sl~~F~~~f~~---~~~r~~L~~~~~~~~dp~~~i------~VfF~~~ 93 (179)
+.|+.||||+|||++|||+||||.|+++|+++|+++|+++||+ .|+|++|+|++.+.+||++++ |||||++
T Consensus 6 ~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~g~p~r~~L~~~~~~~~d~~~k~~~~~~~~VfF~~~ 85 (215)
T 1dzf_A 6 ERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDE 85 (215)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCHhHhcCCHHHHHHHHccccCCCchhheEEEecCCCChhhhhccCCceEEEecCC
Confidence 6889999999999999999999999999999999999999997 799999999999999999998 9999999
Q ss_pred CccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccC-Cceeeee----------eeecCCccccCHHHHHHH
Q 030295 94 EEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFP-FKVEIFY----------HILQPKHEVLSAGERDKL 162 (179)
Q Consensus 94 ~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~-~~ie~f~----------H~lVPkH~~l~~eEk~~l 162 (179)
++||+|+||+|+++| +++|++++|||+|+++||+|++++.+++ ++||+|+ |+|||+|++||+|||++|
T Consensus 86 ~~vgvk~ir~~~~~~-~~e~~~~~IlV~q~~itp~Ak~~l~~~~~~~iE~F~e~eL~vni~~H~lVP~H~~l~~eE~~~l 164 (215)
T 1dzf_A 86 PSVGVKTMKTFVIHI-QEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKREL 164 (215)
T ss_dssp SEECHHHHHHHHHHH-HHTTCSEEEEEESSEECHHHHTTTTSSTTCEEEEEEHHHHSSCGGGSTTSCEEEECCHHHHHHH
T ss_pred CccchHHHHHHHHHH-HhcCCceEEEEECCCCChHHHHHHHHhcCceEEEeehHHheeccccceeccceEEccHHHHHHH
Confidence 999999999999999 9999999999999999999999999998 8999998 999999999999999999
Q ss_pred HHHcCCCCCCCcccccC
Q 030295 163 MKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 163 L~~y~i~~~qLP~i~~~ 179 (179)
|++|+++++|||||+.+
T Consensus 165 L~~y~i~~~qLP~I~~~ 181 (215)
T 1dzf_A 165 LKRYRLKESQLPRIQRA 181 (215)
T ss_dssp HHHTTCCGGGSCEECTT
T ss_pred HHHcCCCHHHCCceecc
Confidence 99999999999999864
No 3
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=99.53 E-value=1.7e-15 Score=108.93 Aligned_cols=39 Identities=31% Similarity=0.602 Sum_probs=36.6
Q ss_pred eeeeeeecCCccccCHHHHHHHHHHcCCCCCCCcccccC
Q 030295 141 EIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 141 e~f~H~lVPkH~~l~~eEk~~lL~~y~i~~~qLP~i~~~ 179 (179)
++.+|+|||+|++||+|||++||++|+++++|||||+.+
T Consensus 2 nIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLPrI~~~ 40 (78)
T 1hmj_A 2 KVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYED 40 (78)
T ss_pred CccceeeCCCeEECCHHHHHHHHHHcCCCHHHCCeeeCc
Confidence 467899999999999999999999999999999999864
No 4
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=99.53 E-value=2.2e-15 Score=108.08 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=37.5
Q ss_pred eeeeeeeecCCccccCHHHHHHHHHHcCCCCCCCcccccC
Q 030295 140 VEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 140 ie~f~H~lVPkH~~l~~eEk~~lL~~y~i~~~qLP~i~~~ 179 (179)
+++.+|+|||+|++||+||+++||++|+++++|||||+.+
T Consensus 3 vnIt~H~LVPkH~iLs~eEk~~lL~~y~i~~~qLP~I~~~ 42 (77)
T 1eik_A 3 REILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTT 42 (77)
T ss_dssp CCCCSSSSCCEEEEECHHHHHHHHHHTTCCTTTSCCCBTT
T ss_pred ccCccceecCCEEEcCHHHHHHHHHHcCCCHHHCCeeeCc
Confidence 5677899999999999999999999999999999999864
No 5
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=99.46 E-value=1.5e-14 Score=105.17 Aligned_cols=42 Identities=36% Similarity=0.446 Sum_probs=39.0
Q ss_pred CceeeeeeeecCCccccCHHHHHHHHHHcCCCCCCCcccccC
Q 030295 138 FKVEIFYHILQPKHEVLSAGERDKLMKKYKIEGKQVTILVKQ 179 (179)
Q Consensus 138 ~~ie~f~H~lVPkH~~l~~eEk~~lL~~y~i~~~qLP~i~~~ 179 (179)
+.+++.+|+|||+|++||+||+++||++|+++++|||+|+.+
T Consensus 7 ~~~Ni~~H~LVPkH~vLs~eE~~~ll~~y~i~~~qLP~I~~~ 48 (84)
T 4ayb_H 7 RKIDPRIHYLVPKHEVLSIDEAYKILKELGIRPEQLPWIRAS 48 (84)
T ss_dssp -CCCCSSSSSCCEEEECCHHHHHHHHHHHTCCGGGSCCEESS
T ss_pred ceecccccccCCCeEECCHHHHHHHHHHhcCCHhHCCeeccc
Confidence 578889999999999999999999999999999999999864
No 6
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=64.37 E-value=20 Score=26.44 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHhCC--C--CCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCc
Q 030295 56 LTEFRFTFGD--K--CDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALH 115 (179)
Q Consensus 56 l~~F~~~f~~--~--~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~ 115 (179)
+.+|.++|.- . |.-+..-|++-. ...+-+-|-|++-.....+.|+++++.. .+.|++
T Consensus 46 l~dFIsryARTDEImPEDKTvGFvviN--~dKK~mSvsFsd~~~~~K~~i~ei~kky-kd~Gyk 106 (111)
T 2jmk_A 46 MMDFISRFARTDEIMPEDKTVGFVVVN--ADKKLMSVSFSDIDENMKKVIKATAEKF-KNKGFK 106 (111)
T ss_dssp HHHHHHHHCCCSCCCSSCEEEEEEEEE--TTTTEEEEEECSCCTTHHHHHHHHHHHG-GGGCCE
T ss_pred HHHHHHHhhcccccCCCCceeEEEEEe--cCCeEEEEEeehhhhhHHHHHHHHHHHh-hcCCce
Confidence 8999999963 2 444555555533 3345688999998888999999999998 777765
No 7
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=62.61 E-value=10 Score=34.65 Aligned_cols=62 Identities=8% Similarity=0.177 Sum_probs=45.2
Q ss_pred cCCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccCCceeeeeeeecCCccccCHHHHHHHHHHc
Q 030295 91 LGTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHEVLSAGERDKLMKKY 166 (179)
Q Consensus 91 ~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~~~ie~f~H~lVPkH~~l~~eEk~~lL~~y 166 (179)
..+..||.+.|+.|+..| .+...||+|+-+..|..|.+.+..-...|.. ++-++-.+||.+|
T Consensus 360 ~~~~~Vg~~~I~~f~g~l---~~~~~GifITTS~Ft~~A~~ea~~d~~pI~L-----------IdG~~L~ell~k~ 421 (456)
T 4f0q_A 360 QPTSSVSPEQVARVVARL---RRGWIGVYVTTGSFSRQAQVEIIDDQYPVVL-----------IAGGTLAATVRRM 421 (456)
T ss_dssp CTTSEECHHHHHHHHTTC---CTTEEEEEEESSEECHHHHHHHHHTTCCEEE-----------ECHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHhh---cCCCeEEEEECCcCCHHHHHHHHcCCCcEEE-----------EcHHHHHHHHHHH
Confidence 344579999999999988 4678999999999999998876654444544 4455555555554
No 8
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=58.88 E-value=11 Score=28.82 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=52.7
Q ss_pred HHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCC
Q 030295 36 VLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEAL 114 (179)
Q Consensus 36 v~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni 114 (179)
+.-||++.||.|..--.+.+.++|.+..-+ .|+ - |.+.+.. .-.+..++.+++.+ .+.+.
T Consensus 38 va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~d--i--------------V~lS~~~--~~~~~~~~~~i~~L-~~~g~ 98 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVD--V--------------IGVSILN--GAHLHLMKRLMAKL-RELGA 98 (161)
T ss_dssp HHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCS--E--------------EEEEESS--SCHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCC--E--------------EEEEeec--hhhHHHHHHHHHHH-HhcCC
Confidence 446889999999987778899999876522 222 1 2222221 24578889999998 77776
Q ss_pred ceEEEEEcCCCCHHHHHHhhccC
Q 030295 115 HGLILILQSNMNTFARKEVLKFP 137 (179)
Q Consensus 115 ~~~IlV~q~~lt~~Akk~l~~~~ 137 (179)
....+++.+.+.+..-..+..+.
T Consensus 99 ~~i~v~vGG~~~~~~~~~l~~~G 121 (161)
T 2yxb_A 99 DDIPVVLGGTIPIPDLEPLRSLG 121 (161)
T ss_dssp TTSCEEEEECCCHHHHHHHHHTT
T ss_pred CCCEEEEeCCCchhcHHHHHHCC
Confidence 44556666776654333344443
No 9
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=49.18 E-value=30 Score=27.89 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=39.7
Q ss_pred HHHhhccCCceEEEEEcCCCCHHHHHHhhccCCceeeee-------------eeecCC-ccccCHHHHHHHHHH
Q 030295 106 GQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY-------------HILQPK-HEVLSAGERDKLMKK 165 (179)
Q Consensus 106 ~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~~~ie~f~-------------H~lVPk-H~~l~~eEk~~lL~~ 165 (179)
..+ ...+.+++++|+-+..|+.|++.....+..+-... ..|-|- ---||++|+++||++
T Consensus 87 ~d~-~~~~a~~g~VVTn~~FT~~A~~~A~~~~I~Li~wd~p~g~~L~~~i~~~~l~pi~~l~~~~~e~~~l~~~ 159 (199)
T 1y88_A 87 LDV-EKHGFTQPWIFTNTKFSEEAKKYAGCVGIKLTGWSYPEKEGIEVLLESKGLYPITILRIDKEVLDELVRA 159 (199)
T ss_dssp HHH-GGGTCSEEEEECSSEECHHHHHHHHHHTCEEECSSCSTTTSHHHHHHTTTCCBGGGSSCCHHHHHHHHHT
T ss_pred hhh-hccCCCEEEEEECCCCCHHHHHHHHHCCcEEEECCCCchHHHHHHHHHcCCCCeEEEeeCHHHHhhhhcC
Confidence 344 45588999999999999999987766542221111 334441 116899999999875
No 10
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.05 E-value=61 Score=25.71 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=51.4
Q ss_pred HHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCC
Q 030295 36 VLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEAL 114 (179)
Q Consensus 36 v~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni 114 (179)
+.-||+++||.|-.--.+.+.++|.+.--+ +|+ -|.+-|+.--.-.+..++.+++.+ .+.+.
T Consensus 112 v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d----------------~v~l~~S~l~~~~~~~~~~~i~~l-~~~~~ 174 (215)
T 3ezx_A 112 VTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGE----------------KVLLVGSALMTTSMLGQKDLMDRL-NEEKL 174 (215)
T ss_dssp HHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTS----------------CEEEEEECSSHHHHTHHHHHHHHH-HHTTC
T ss_pred HHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCC----------------EEEEEchhcccCcHHHHHHHHHHH-HHcCC
Confidence 456899999999876677889999765421 222 133323333334567789999999 88887
Q ss_pred --ceEEEEEcCCCCHHH
Q 030295 115 --HGLILILQSNMNTFA 129 (179)
Q Consensus 115 --~~~IlV~q~~lt~~A 129 (179)
+--|+|-...+|+..
T Consensus 175 ~~~v~v~vGG~~~~~~~ 191 (215)
T 3ezx_A 175 RDSVKCMFGGAPVSDKW 191 (215)
T ss_dssp GGGSEEEEESSSCCHHH
T ss_pred CCCCEEEEECCCCCHHH
Confidence 445677666677643
No 11
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=37.41 E-value=94 Score=21.01 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCCCeEEEEecCCCccchhHHHHHHHHHhhccCCceEEEEEcCCC----------CHHHHHHhhccC--------Ccee
Q 030295 80 SNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEALHGLILILQSNM----------NTFARKEVLKFP--------FKVE 141 (179)
Q Consensus 80 ~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~l----------t~~Akk~l~~~~--------~~ie 141 (179)
++++..|||- .-...+.-..|+.++... -.+....++....- ...|.+|+..+. ..++
T Consensus 5 ~~~~~~l~V~-nlp~~~t~~~l~~~F~~~---G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIR-NLPYKITAEEMYDIFGKY---GPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEE-SCCTTCCHHHHHHHHHTT---SCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEe-CCCCCCCHHHHHHHHHhc---CCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4455556665 334568888899888775 33444333322111 135777777665 1232
Q ss_pred eee--eeecCCccccCHHHHHHHHHHcCCCCCCC
Q 030295 142 IFY--HILQPKHEVLSAGERDKLMKKYKIEGKQV 173 (179)
Q Consensus 142 ~f~--H~lVPkH~~l~~eEk~~lL~~y~i~~~qL 173 (179)
.-. ...-....-.++++.+++.++|++...|+
T Consensus 81 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 114 (115)
T 3lqv_A 81 YYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPP 114 (115)
T ss_dssp ECCHHHHTTTSCHHHHHHHHHHHHHHHCCCCSCC
T ss_pred EecCChhhhhhhHhHhHHHHHHHHHHhCCCCCCC
Confidence 222 11122344567888899999999998775
No 12
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=34.08 E-value=10 Score=24.96 Aligned_cols=10 Identities=70% Similarity=1.484 Sum_probs=6.2
Q ss_pred CCCCCCcccc
Q 030295 2 GGSGGGGECI 11 (179)
Q Consensus 2 ~~~~~~~~~~ 11 (179)
||.||||+-|
T Consensus 29 gggggggelm 38 (62)
T 2i7u_A 29 GGGGGGGELM 38 (62)
T ss_dssp SSCSSSCHHH
T ss_pred CCCCchHHHH
Confidence 5666677644
No 13
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=33.46 E-value=1.5e+02 Score=22.73 Aligned_cols=71 Identities=4% Similarity=0.020 Sum_probs=45.5
Q ss_pred CCCccchhHHHHHHHHHhhccCCceEEEEEcCCCCHHHHHHhhccCCceeeee--------eeecCCccccCHHHHHHHH
Q 030295 92 GTEEIRTQAIRGLYGQILNKEALHGLILILQSNMNTFARKEVLKFPFKVEIFY--------HILQPKHEVLSAGERDKLM 163 (179)
Q Consensus 92 ~~~~vgvk~Ir~~~~~~~~~eni~~~IlV~q~~lt~~Akk~l~~~~~~ie~f~--------H~lVPkH~~l~~eEk~~lL 163 (179)
++---+=.|++..++.+ .+.|..+..+.+. -.++.+.+.+.... .+-.+. ...-.+.+.+|++|...+|
T Consensus 127 DDvi~TG~Tl~~a~~~L-~~~ga~~V~v~~~-v~~~~~~~~l~~~~-~~v~~~~~~~f~~v~~~y~~~~~~~~~ev~~~l 203 (208)
T 1wd5_A 127 DDGVATGASMEAALSVV-FQEGPRRVVVAVP-VASPEAVERLKARA-EVVALSVPQDFAAVGAYYLDFGEVTDEDVEAIL 203 (208)
T ss_dssp CSCBSSCHHHHHHHHHH-HTTCCSEEEEEEE-EBCHHHHHHHHTTS-EEEEEECCTTCCCGGGGBSCCCCCCHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHH-HHcCCCEEEEEEE-EcCHHHHHHhcccC-cEEEEecCcchhhHHHHhcCCCCCCHHHHHHHH
Confidence 44434467888888888 8888887766662 23466767665543 222222 2223455789999999999
Q ss_pred HH
Q 030295 164 KK 165 (179)
Q Consensus 164 ~~ 165 (179)
++
T Consensus 204 ~~ 205 (208)
T 1wd5_A 204 LE 205 (208)
T ss_dssp HT
T ss_pred HH
Confidence 84
No 14
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=25.97 E-value=83 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|.....+.+.|.++||.|.+
T Consensus 33 ~~lK~~i~~~L~~~G~eV~D 52 (166)
T 3s5p_A 33 RDLRMFLQQRASAHGYEVMD 52 (166)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 55678899999999999976
No 15
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=25.79 E-value=1.4e+02 Score=22.85 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccC
Q 030295 35 TVLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEA 113 (179)
Q Consensus 35 Tv~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~en 113 (179)
-+..||+.+||.|..--.+.+.++|.+.-.. +|+ -+.++ +.. .-....++.+++.+ .+.+
T Consensus 107 ~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d--~v~lS--------------~~~--~~~~~~~~~~i~~l-~~~~ 167 (210)
T 1y80_A 107 LVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPD--IVGMS--------------ALL--TTTMMNMKSTIDAL-IAAG 167 (210)
T ss_dssp HHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCS--EEEEE--------------CCS--GGGTHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCC--EEEEe--------------ccc--cccHHHHHHHHHHH-HhcC
Confidence 4557899999999876677888999765421 222 22222 211 23567899999999 7777
Q ss_pred Cc--eEEEEEcCCCCH
Q 030295 114 LH--GLILILQSNMNT 127 (179)
Q Consensus 114 i~--~~IlV~q~~lt~ 127 (179)
.. --|+|-....++
T Consensus 168 ~~~~~~v~vGG~~~~~ 183 (210)
T 1y80_A 168 LRDRVKVIVGGAPLSQ 183 (210)
T ss_dssp CGGGCEEEEESTTCCH
T ss_pred CCCCCeEEEECCCCCH
Confidence 63 345555444554
No 16
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=25.45 E-value=1.3e+02 Score=23.14 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|.....+.+.|.++||.|.+
T Consensus 12 ~~lK~~i~~~L~~~G~eV~D 31 (149)
T 3he8_A 12 YNLKREIADFLKKRGYEVID 31 (149)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45577889999999999975
No 17
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=25.01 E-value=1.3e+02 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|.....+.+.|.++||.|.+
T Consensus 32 ~~lK~~i~~~L~~~G~eV~D 51 (169)
T 3ph3_A 32 YNLKREIADFLKKRGYEVID 51 (169)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 44677899999999999976
No 18
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=24.52 E-value=64 Score=26.92 Aligned_cols=49 Identities=6% Similarity=-0.024 Sum_probs=34.7
Q ss_pred EEEEEcCCCCHHHHHHhhccCCceeeeeeeecCCcc-ccCHHHHHHHHHH
Q 030295 117 LILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHE-VLSAGERDKLMKK 165 (179)
Q Consensus 117 ~IlV~q~~lt~~Akk~l~~~~~~ie~f~H~lVPkH~-~l~~eEk~~lL~~ 165 (179)
..+++...-....+++|.+..+.++.-+..++|+.. -|++|+.+++++-
T Consensus 174 ~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~kl 223 (247)
T 4f3q_A 174 IDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRL 223 (247)
T ss_dssp EEEEECGGGHHHHHHHHHHTTCCCSEEEEEEEESSCEECCHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHcCCCeeEEEEEEecCCccccCHHHHHHHHHH
Confidence 345555444556788888877778878889999764 4788887776653
No 19
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=23.89 E-value=77 Score=26.31 Aligned_cols=48 Identities=8% Similarity=-0.059 Sum_probs=34.6
Q ss_pred EEEEcCCCCHHHHHHhhccCCceeeeeeeecCCccc-cCHHHHHHHHHH
Q 030295 118 ILILQSNMNTFARKEVLKFPFKVEIFYHILQPKHEV-LSAGERDKLMKK 165 (179)
Q Consensus 118 IlV~q~~lt~~Akk~l~~~~~~ie~f~H~lVPkH~~-l~~eEk~~lL~~ 165 (179)
.|++...-....+++|.+..+.++.-++.++|+.++ |++|+.+++++-
T Consensus 174 ~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~kl 222 (240)
T 1mw7_A 174 IIRGDYNSFKLLNEGFESLKLPILKASLQRIATTPIELNDEQMELTEKL 222 (240)
T ss_dssp EEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCBCCCHHHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHcCCCeeeeeeEeCCCCCcccCHHHHHHHHHH
Confidence 345555445567888888778888888999997665 688877776653
No 20
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=23.34 E-value=1.5e+02 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCCCccCc
Q 030295 30 FLSRRTVLQMLNDRGYAVPN 49 (179)
Q Consensus 30 ~rvrrTv~eMl~DRGY~V~~ 49 (179)
|.....+.+.|.+.||.|.+
T Consensus 24 ~~lK~~i~~~L~~~G~eV~D 43 (155)
T 1o1x_A 24 FELKEKVKNYLLGKGIEVED 43 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 45577889999999998876
No 21
>1ydl_A TFIIH, general transcription factor IIH, polypeptide 5; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Homo sapiens} SCOP: d.295.1.1 PDB: 2jnj_A
Probab=23.17 E-value=44 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=27.2
Q ss_pred hccCCceEEEEEcCCCCHHHHHHhhccC--------Cceeeee--eeecCCcc
Q 030295 110 NKEALHGLILILQSNMNTFARKEVLKFP--------FKVEIFY--HILQPKHE 152 (179)
Q Consensus 110 ~~eni~~~IlV~q~~lt~~Akk~l~~~~--------~~ie~f~--H~lVPkH~ 152 (179)
...|+.+|++|..+ |+.|+.+..+. |.||.+. |.+|=.+.
T Consensus 8 ~~~~~~kGvLI~CD---pa~Kq~Il~lde~~~~~~kFIIedLDdtHLfV~~~~ 57 (79)
T 1ydl_A 8 HSHGTRKGMLIECD---PAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAEL 57 (79)
T ss_dssp -CCCCCCCEEEECC---HHHHHHHHHHHHTTTTSSCCEEEECSSSEEEECTTH
T ss_pred cccccccceEEEeC---HHHHHHHHHHhccCCcCCCEEEEEcCCceEEEcHHH
Confidence 35788999999876 66677665442 6787776 77775543
No 22
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=23.11 E-value=25 Score=30.49 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCCccCcccccCCHHHHHH
Q 030295 33 RRTVLQMLNDRGYAVPNSELTRSLTEFRF 61 (179)
Q Consensus 33 rrTv~eMl~DRGY~V~~~el~~sl~~F~~ 61 (179)
|++|+|+++|.||.|.+. .++++|..+
T Consensus 277 R~sVi~LA~~~Gi~V~Er--~it~~El~~ 303 (372)
T 3dtg_A 277 RDSLLQLATDAGFAVEER--KIDVDEWQK 303 (372)
T ss_dssp HHHHHHHHHHHTCEEEEC--CCBHHHHHH
T ss_pred HHHHHHHHHHCCceEEEE--eCCHHHHHH
Confidence 689999999999999875 457777764
No 23
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.52 E-value=18 Score=26.05 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.3
Q ss_pred cccCHHHHHHHHHHcCCCCCCCcccc
Q 030295 152 EVLSAGERDKLMKKYKIEGKQVTILV 177 (179)
Q Consensus 152 ~~l~~eEk~~lL~~y~i~~~qLP~i~ 177 (179)
.-|+-+|=++||++|++.++||-.|.
T Consensus 41 vnLpv~eFn~lL~~~~Lt~~Ql~lIr 66 (90)
T 2lz1_A 41 INLPVVDFNEMMSKEQFNEAQLALIR 66 (90)
T ss_dssp HHSCHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 45788999999999999999987663
No 24
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=22.45 E-value=41 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=9.2
Q ss_pred cCHHHHHHHHH
Q 030295 154 LSAGERDKLMK 164 (179)
Q Consensus 154 l~~eEk~~lL~ 164 (179)
||+|||+.++.
T Consensus 1 LseEEk~~I~~ 11 (38)
T 3l9k_W 1 LSEEQKQMIIL 11 (38)
T ss_dssp CCHHHHHHHHT
T ss_pred CCHHHHHHHhc
Confidence 78999998874
No 25
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=21.36 E-value=34 Score=25.14 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=44.6
Q ss_pred HHHHhcCCCCccCcccccCCHHHHHHHhCC-CCCCCceEEEecCCCCCCCeEEEEecCCCccchhHHHHHHHHHhhccCC
Q 030295 36 VLQMLNDRGYAVPNSELTRSLTEFRFTFGD-KCDLESLRLCLPLRSNPSKKMLVVYLGTEEIRTQAIRGLYGQILNKEAL 114 (179)
Q Consensus 36 v~eMl~DRGY~V~~~el~~sl~~F~~~f~~-~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~Ir~~~~~~~~~eni 114 (179)
+--||++.||.|-.--.+.+.++|.+..-+ .++ - +.+.+.. .-....++.+++.+ .+.+.
T Consensus 23 v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d--~--------------v~lS~~~--~~~~~~~~~~i~~l-~~~g~ 83 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIGVLSPQELFIKAAIETKAD--A--------------ILVSSLY--GQGEIDCKGLRQKC-DEAGL 83 (137)
T ss_dssp HHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCS--E--------------EEEEECS--STHHHHHTTHHHHH-HHTTC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCC--E--------------EEEEecC--cCcHHHHHHHHHHH-HhcCC
Confidence 446889999999976678899999876532 222 1 2222222 23456778888888 77777
Q ss_pred ceEEEEEcCCC
Q 030295 115 HGLILILQSNM 125 (179)
Q Consensus 115 ~~~IlV~q~~l 125 (179)
....+++.+..
T Consensus 84 ~~i~v~vGG~~ 94 (137)
T 1ccw_A 84 EGILLYVGGNI 94 (137)
T ss_dssp TTCEEEEEESC
T ss_pred CCCEEEEECCC
Confidence 43444455543
Done!