BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030296
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 199 bits (506), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 87/143 (60%), Positives = 118/143 (82%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+AE+ +DPP +CSAGPKGDN+Y W +TI+GP G+ Y+GG+FFLDITF DYPFK
Sbjct: 6 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ + +P+V I
Sbjct: 66 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A Y+ ++A+HD++A +WT R+A
Sbjct: 126 ATQYMTNRAEHDRMARQWTKRYA 148
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 118/143 (82%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+A++ +DPP +CSAGPKGDN+Y W +TI+GP G+ Y+GG+FFLDITF +YPFK
Sbjct: 51 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFK 110
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV F TRIYHCN++S G + LDILKD+WSPALTI+KVLL++ S+ T+ + +P+V I
Sbjct: 111 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSI 170
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A Y+ ++A+HD++A +WT R+A
Sbjct: 171 ATQYMTNRAEHDRMARQWTKRYA 193
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 194 bits (493), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 116/143 (81%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+ +L DPP CSAGP GD+L++W ATI+GP+ +PYQGG+FFL I FPTDYPFK
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF T+IYH N++S G++ LDIL+ WSPALT++KVLL++ S+ +P+ +P+VP I
Sbjct: 69 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 128
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
AH+Y DK K+++LA EWT ++A
Sbjct: 129 AHIYKSDKEKYNRLAREWTQKYA 151
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 115/143 (80%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L+ DPP +CSAGP GD++++W ATI+GP +PY GG+FFL+I FP+DYPFK
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV F T+IYH N++S G + LDILKD WSPALTI+KVLL++ S+ T+P+ +P+VP I
Sbjct: 84 PPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 143
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
AHLY D+ ++DQ A EW+ ++A
Sbjct: 144 AHLYKSDRMRYDQTAREWSQKYA 166
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+ +L DPP CSAGP GD+L++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ +++QLA EWT ++A
Sbjct: 127 ARIYKTDRERYNQLAREWTQKYA 149
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 190 bits (483), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 85/143 (59%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI RE+A+L DPP SAGP GD+L++W ATI+GPA +PY GG+FFL I FPTDYPFK
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV F TRIYH N++S G++ LDIL+D WSPALTI+KVLL++ S+ T+P+ +P+VP I
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
AH+Y D+++++ A EWT ++A
Sbjct: 124 AHVYKTDRSRYELSAREWTRKYA 146
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G+++LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 189 bits (479), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+++L DPP CSAGP GD+LY+W A+I+GPA +PY GG+FFL I FPTDYPFK
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPK++F T+IYH N+++ GN+ LDILKD WSPALT++KVLL++ S+ T+ + +P+VP I
Sbjct: 65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEI 124
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
AH+Y D+ K++ A EWT ++A
Sbjct: 125 AHIYKTDRPKYEATAREWTKKYA 147
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G+++LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 67 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 126
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 127 ARIYKTDREKYNRIAREWTQKYA 149
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 186 bits (473), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 115/143 (80%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+++L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G+++LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 64 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K+++++ EWT ++A
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYA 146
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 186 bits (473), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 82 PPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 142 ARIYKTDREKYNRIAREWTQKYA 164
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 186 bits (472), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 134 ARIYQTDREKYNRIAREWTQKYA 156
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 186 bits (471), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 82 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 141
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 142 ARIYKTDREKYNRIAREWTQKYA 164
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 69 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 128
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 129 ARIYKTDREKYNRIAREWTQKYA 151
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 186 bits (471), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYA 146
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 186 bits (471), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 186 bits (471), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+++L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 74 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 133
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K+++++ EWT ++A
Sbjct: 134 ARIYKTDRDKYNRISREWTQKYA 156
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 185 bits (470), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+++L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 63 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K+++++ EWT ++A
Sbjct: 123 ARIYKTDRDKYNRISREWTQKYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+++L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K+++++ EWT ++A
Sbjct: 126 ARIYKTDRDKYNRISREWTQKYA 148
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 3 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G+++LDIL+ WSPAL I+KVLL++ S+ +P+ +P+VP I
Sbjct: 63 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEI 122
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 123 ARIYKTDREKYNRIAREWTQKYA 145
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 114/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+++L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 72 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 131
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K+++++ EWT ++A
Sbjct: 132 ARIYKTDRDKYNRISREWTQKYA 154
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+++L DPP CSAGP GD+L++W ATI+GP + YQGG+FFL + FPTDYPFK
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPK+AF T+IYH N++S G++ LDIL+ WSPALT++KVLL++ S+ +P+ +P+VP I
Sbjct: 70 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y DK K+++ A EWT ++A
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYA 152
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+++L DPP CSAGP GD+L++W ATI+GP + YQGG+FFL + FPTDYPFK
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPK+AF T+IYH N++S G++ LDIL+ WSPALT++KVLL++ S+ +P+ +P+VP I
Sbjct: 82 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 141
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y DK K+++ A EWT ++A
Sbjct: 142 AQIYKSDKEKYNRHAREWTQKYA 164
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 113/143 (79%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+++L DPP CSAGP GD+L++W ATI+GP + YQGG+FFL + FPTDYPFK
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPK+AF T+IYH N++S G++ LDIL+ WSPALT++KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y DK K+++ A EWT ++A
Sbjct: 126 AQIYKSDKEKYNRHAREWTQKYA 148
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 112/143 (78%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ W PALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 112/143 (78%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LD L+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 184 bits (466), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 112/143 (78%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP CSAGP GD++++W AT +GP +PYQGG+FFL I FPTDYPFK
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH N++S G++ LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 66 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 126 ARIYKTDREKYNRIAREWTQKYA 148
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 79/143 (55%), Positives = 112/143 (78%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRIQ+E+++L DPP C AGP GD+L++W ATI+GP + YQGG+FFL + FPTDYPFK
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPK+AF T+IYH N++S G++ LDIL+ WSPALT++KVLL++ S+ +P+ +P+VP I
Sbjct: 70 PPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 129
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y DK K+++ A EWT ++A
Sbjct: 130 AQIYKSDKEKYNRHAREWTQKYA 152
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 182 bits (462), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 80/143 (55%), Positives = 112/143 (78%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E+ +L DPP C AGP GD++++W ATI+GP +PYQGG+FFL I FPTDYPFK
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKVAF TRIYH ++S G+++LDIL+ WSPALTI+KVLL++ S+ +P+ +P+VP I
Sbjct: 64 PPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y D+ K++++A EWT ++A
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYA 146
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 172 bits (436), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 109/144 (75%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RIQ+E+ E+ DPP +CSAGP GD++++W ATI GP +PYQGG+FFLD+ FP DYPFK
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
P+V F+T++YH N++ G + LDILKD WSPALT+++VLL++ S+ T+P+ +P+ P +
Sbjct: 67 APRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEV 126
Query: 156 AHLYLEDKAKHDQLAAEWTLRFAK 179
A++ +K + + A EWT +A+
Sbjct: 127 ANVLRANKKQFEDTAREWTRMYAR 150
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 37 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
R+Q+E+ ++ + Q+ A K N + WV I GP GTPY+GG F L IT P DYP+ P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 97 PKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PK+ F+T+I+H N+ S G + LD+LK+ WSPALTI LL+++++ ++P +P +
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEV 146
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A +Y E+ A + A+ WT FA
Sbjct: 147 AKMYKENHALFVKTASVWTKTFA 169
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 92/144 (63%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E +L DP +A P DNL + TI GP +PY+ GIF L++ P DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV FLT+IYH N+D G ++LD+LK +WSPAL I VLL+++++ +P+ ++P+ +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFAK 179
A +++++ A EWT +AK
Sbjct: 126 AEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E +L DP +A P DNL + TI GP +PY+ GIF L++ P DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV FLT+IYH N+D G + LD+LK +WSPAL I VLL+++++ +P+ ++P+ +
Sbjct: 66 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFAK 179
A +++++ A EWT +AK
Sbjct: 126 AEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E +L DP +A P DNL + TI GP +PY+ GIF L++ P DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV FLT+IYH N+D G + LD+LK +WSPAL I VLL+++++ +P+ ++P+ +
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 127
Query: 156 AHLYLEDKAKHDQLAAEWTLRFAK 179
A +++++ A EWT +AK
Sbjct: 128 AEDWIKNEQGAKAKAREWTKLYAK 151
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 88/143 (61%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +PP A P +N ++ I GP GTPY+GG + L++ P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV FLT+IYH N+D G + LDILKD WSPAL I VLL+++++ ++P +P+ +
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + +DK + +A +W +A
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 88/143 (61%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +PP A P +N ++ I GP GTPY+GG + L++ P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV FLT+IYH N+D G + LDILKD WSPAL I VLL+++++ ++P +P+ +
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKV 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + +DK + +A +W +A
Sbjct: 124 AEHFKQDKNDAEHVARQWNKIYA 146
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KRI +E +L DP +A P DNL + TI GP +PY+ GIF L++ P DYP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV FLT+IYH +D G ++LD+LK +WSPAL I VLL+++++ +P+ ++P+ +
Sbjct: 66 APKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDV 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFAK 179
A +++++ A EWT +AK
Sbjct: 126 AEDWIKNEQGAKAKAREWTKLYAK 149
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 82/133 (61%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+R+ R+ L DPP S P +N+ W A I GP GTP++ G F L I F +YP K
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PP V FL++++H NV + G++ LDIL++ WSP ++ +L +++S+ P+ ++P
Sbjct: 67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQA 126
Query: 156 AHLYLEDKAKHDQ 168
A LY E+K ++++
Sbjct: 127 AQLYQENKREYEK 139
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KRI +E+ + DP + + ++++ T +GP GTPY+GG F +DI P +YPF
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 95 KPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVP 153
KPPK+ F T++YH N+ S G + LDILK++WSP +T+ L++++++ +P ++P
Sbjct: 64 KPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDA 123
Query: 154 GIAHLYLEDKAKHDQLAAEWTLRFA 178
+A YL D+ ++ AA WT +A
Sbjct: 124 EVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 53 CSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112
SA G +++ W I GP GTPY+GG F LDI P DYP+ PPK+ F+T+I+H N+ S
Sbjct: 65 VSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISS 124
Query: 113 -AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAA 171
G + LDILK WSPALTI LL++++M +P +P +A + +E+ Q A
Sbjct: 125 QTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
Query: 172 EWTLRFAK 179
WT FAK
Sbjct: 185 LWTETFAK 192
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 81/133 (60%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KR+ R+ L DPP S P+ +N+ W A I GP TP+ GG F L + F DYP K
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PP V F++R++H N+ + G++ LDIL++ WSP + +L +++S+ +P+ ++P
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 156 AHLYLEDKAKHDQ 168
A +Y E K ++++
Sbjct: 127 ARMYSESKREYNR 139
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 36 KRIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KRI +E+ + DP + ++++ T +GP GTPY+GG F +DI P +YPF
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 95 KPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVP 153
KPPK+ F T++YH N+ S G + LDIL+++WSP +T+ L++++++ +P ++P
Sbjct: 65 KPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDA 124
Query: 154 GIAHLYLEDKAKHDQLAAEWTLRFA 178
+A YL D+ ++ AA WT +A
Sbjct: 125 EVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +P A P N + I GP +P++GG F L++ P +YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV F+T+IYH NVD G + LDILKD WSPAL I VLL+++++ + P+ +P+ +
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 127
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + ++A+ + A WT +A
Sbjct: 128 AEQWKTNEAQAIETARAWTRLYA 150
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +P A P N + I GP +P++GG F L++ P +YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV F+T+IYH NVD G + LDILKD WSPAL I VLL+++++ + P+ +P+ +
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 123
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + ++A+ + A WT +A
Sbjct: 124 AEQWKTNEAQAIETARAWTRLYA 146
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +P A P N + I GP +P++GG F L++ P +YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV F+T+IYH NVD G + LDILKD WSPAL I VLL+++++ + P+ +P+ +
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 125
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + ++A+ + A WT +A
Sbjct: 126 AEQWKTNEAQAIETARAWTRLYA 148
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +P A P N + I GP +P++GG F L++ P +YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV F+T+IYH NVD G + LDILKD WSPAL I VLL+++++ + P+ +P+ +
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 128
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + ++A+ + A WT +A
Sbjct: 129 AEQWKTNEAQAIETARAWTRLYA 151
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+RI +E L +P A P N + I GP +P++GG F L++ P +YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PKV F+T+IYH NVD G + LDILKD WSPAL I VLL+++++ + P+ +P+ +
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 130
Query: 156 AHLYLEDKAKHDQLAAEWTLRFA 178
A + ++A+ + A WT +A
Sbjct: 131 AEQWKTNEAQAIETARAWTRLYA 153
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 81/133 (60%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+R+ R+ +L DPP S P DN+ W A I GP TP++ G F L + F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PP V F+++++H NV + G++ LDIL++ WSP + +L +++S+ P+ ++P
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 156 AHLYLEDKAKHDQ 168
A LY E++ ++++
Sbjct: 127 AQLYQENRREYEK 139
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KR+Q+E+ L M + SA P+ DNL+ WV TI G AGT Y+ + L + FP+ YP+
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
P V FLT YH NVD+ GN++LDILK+ WS + +LL+++S+ P++ +P+
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 156 AHLY 159
A L+
Sbjct: 153 AELW 156
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 81/133 (60%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+R+ R+ +L DPP S P DN+ W A I GP TP++ G F L + F +YP K
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PP V F+++++H NV + G++ LDIL++ WSP + +L +++S+ P+ ++P
Sbjct: 70 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 129
Query: 156 AHLYLEDKAKHDQ 168
A LY E++ ++++
Sbjct: 130 AQLYQENRREYEK 142
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 79/124 (63%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
KR+Q+E+ L M +A P GDNL+ WVAT+ GP T Y+ + L + FP+DYP+K
Sbjct: 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PP V F T +H NVD +GN+ LDILK++W+ + + +LL+++S+ P+ +P+
Sbjct: 72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQA 131
Query: 156 AHLY 159
A ++
Sbjct: 132 ADMW 135
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 37 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
R++RE+ L +PP + D + + A I+G A TPY+ G+F L++ P YPF+P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 97 PKVAFLTRIYHCNVDSAGNVNLDIL----KDSWSPALTITKVLLAVRSMFTNPSLHNPIV 152
P++ FLT IYH N+DSAG + LD+L K +W P+L I VL +++ + + P+ +P++
Sbjct: 68 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 127
Query: 153 PGIAHLYLEDKAKHDQLAAEWTLRFAK 179
I+ + +K + A +WT + A+
Sbjct: 128 ADISSEFKYNKPAFLKNARQWTEKHAR 154
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+R+ R+ + D P SA P DN+ W A IIGPA TPY+ G F L + F +YP K
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PP V FL+ ++H NV + G + LDIL++ W+P + +L +++S+F +P+ +P
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126
Query: 156 AHLYLEDKAKHDQLAAE 172
A L+ + K+++ + E
Sbjct: 127 ATLFKDHKSQYVKRVKE 143
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 14/140 (10%)
Query: 38 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
++R++AELN +P + SAG DN LY W IIGP T Y+GG+F +TFP DYP +P
Sbjct: 22 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 97 PKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFT 143
PK+ F+T I+H NVD G+V + IL ++ W P T+ ++++V SM
Sbjct: 82 PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
Query: 144 NPSLHNPIVPGIAHLYLEDK 163
+P+ +P A + ED+
Sbjct: 142 DPNGDSPANVDAAKEWREDR 161
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 14/153 (9%)
Query: 38 IQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
+++++A++ P SAG DN +Y W +IGP T Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 97 PKVAFLTRIYHCNVDSAGNVNLDILKD-------------SWSPALTITKVLLAVRSMFT 143
PK+ F++ I+H N+D GNV + IL D W P T+ +LL+V SM T
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 144 NPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 176
+P+ +P A + E+ A+ + A+ R
Sbjct: 128 DPNFESPANVDAAKMQRENYAEFKKKVAQCVRR 160
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+ + +E+ L DPP P ++L + TI GP GTPY GG+F + + D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPK FLT+I+H NV + G + +++LK W+ L I VLL ++ + +P+ + +
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135
Query: 156 AHLYLEDKAKHDQLAAEWTL 175
L LE+ +++ AA L
Sbjct: 136 GRLLLEN---YEEYAARARL 152
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL W I+ P PY G F ++I FP +YPFKPPK+ F T+IYH N+D G V L +
Sbjct: 31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 121 LK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179
+ ++W PA +V+ ++ ++ +P +P+ +A Y +D+ K + A E+T ++ +
Sbjct: 90 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL W I+ P PY G F ++I FP +YPFKPPK+ F T+IYH N+D G V L +
Sbjct: 33 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 121 LK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179
+ ++W PA +V+ ++ ++ +P +P+ +A Y +D+ K + A E+T ++ +
Sbjct: 92 ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 151
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V+L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 38 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 98 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 39 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 37 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 42 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 102 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 14/128 (10%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KR+ +E+ +L D P AGPK +N ++ W I GP TPY G+F + FP DYP
Sbjct: 7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPL 66
Query: 95 KPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSM 141
PPK+ F I H N+ G V + IL ++ WSP ++ K+LL+V SM
Sbjct: 67 SPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSM 126
Query: 142 FTNPSLHN 149
+ P++ +
Sbjct: 127 LSEPNIES 134
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H NV +G V L I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ P +Y +++ ++++ +FA
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 7/139 (5%)
Query: 37 RIQREMAELNMDPP-----QDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTD 91
R+Q E + D P + C + G +L NW I G T ++GG++ L + FP +
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 92 YPFKPPKVAFLTRIYHCNVDSAGNVNLDIL--KDSWSPALTITKVLLAVRSMFTNPSLHN 149
YP +PPK F ++H NV +G V L IL ++ W PA+TI ++LL ++ + +P++ +
Sbjct: 74 YPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIAS 133
Query: 150 PIVPGIAHLYLEDKAKHDQ 168
P ++ +DK ++++
Sbjct: 134 PAQTEAYTMFKKDKVEYEK 152
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KR+ E +L ++PP+ AGP + N + W A I+GP T ++ G+F ++FP DYP
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 95 KPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSM 141
PPK+ F ++H N+ G V + IL + WSP ++ K+LL+V SM
Sbjct: 66 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 125
Query: 142 FTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 172
P+ + + ++ +D+ + ++A +
Sbjct: 126 LAEPNDESGANVDASKMWRDDREQFYKIAKQ 156
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
NL NW I G GTP++GG+F L + F DYP PPK F ++H V +G V L I
Sbjct: 40 NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 121 LKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
L++ W PA+TI ++LL ++ + P++ +P +Y +++ ++++ +FA
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KR+ E +L ++PP+ AGP + N + W A I+GP T ++ G+F ++FP DYP
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 95 KPPKVAFLTRIYHCNVDSAGNVNLDIL-------------KDSWSPALTITKVLLAVRSM 141
PPK+ F ++H N+ G V + IL + WSP ++ K+LL+V SM
Sbjct: 72 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 131
Query: 142 FTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 172
P+ + + ++ +D+ + ++A +
Sbjct: 132 LAEPNDESGANVDASKMWRDDREQFYKIAKQ 162
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KR+ E +L ++PP+ AGP + N + W A I+GP T ++ G+F ++FP DYP
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 95 KPPKVAFLTRIYHCNVDSAGNVNLDILK-------------DSWSPALTITKVLLAVRSM 141
PPK+ F ++H N+ G V + IL + WSP ++ K+LL+V SM
Sbjct: 69 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 128
Query: 142 FTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 172
P+ + + ++ +D+ + ++A +
Sbjct: 129 LAEPNDESGANVDASKMWRDDREQFYKIAKQ 159
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94
KR+ E +L ++PP+ AGP + N + W A I+GP T ++ G+F ++FP DYP
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 95 KPPKVAFLTRIYHCNVDSAGNVNLDILK-------------DSWSPALTITKVLLAVRSM 141
PPK+ F ++H N+ G V + IL + WSP ++ K+LL+V SM
Sbjct: 70 SPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSM 129
Query: 142 FTNPSLHNPIVPGIAHLYLEDKAKHDQLAAE 172
P+ + + ++ +D+ + ++A +
Sbjct: 130 LAEPNDESGANVDASKMWRDDREQFYKIAKQ 160
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 37 RIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
R+ +E+ +L PP D N+ W A ++ P PY F L I+FP +YPFK
Sbjct: 5 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 63
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPG 154
PP + F T+IYH NVD G + L I+ ++W P +VL A+ + P++ P+
Sbjct: 64 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 123
Query: 155 IAHLYLEDKAKHDQLAAEWTLRFA 178
+A L ++ + A E+TLRF
Sbjct: 124 LADLLTQNPELFRKNAEEFTLRFG 147
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 37 RIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
R+ +E+ +L PP D N+ W A ++ P PY F L I+FP +YPFK
Sbjct: 8 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFK 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPG 154
PP + F T+IYH NVD G + L I+ ++W P +VL A+ + P++ P+
Sbjct: 67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMD 126
Query: 155 IAHLYLEDKAKHDQLAAEWTLRFA 178
+A L ++ + A E+TLRF
Sbjct: 127 LADLLTQNPELFRKNAEEFTLRFG 150
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 36 KRIQREMAELNMDPPQDCSAGP--KGD---NLYNWVATIIGPAGTPYQGGIFFLDITFPT 90
+R+Q E + D P A P K D +L W A I G GT + GG++ + + +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 91 DYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLH 148
+YP KPPKV F YH NV +G + L IL + W PA+T+ +++L V+ + +P+ +
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 128
Query: 149 NPIVPGIAHLYLEDKAKHDQ 168
+P + +KA++D+
Sbjct: 129 SPAQEPAWRSFSRNKAEYDK 148
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 7/140 (5%)
Query: 36 KRIQREMAELNMDPPQDCSAGP--KGD---NLYNWVATIIGPAGTPYQGGIFFLDITFPT 90
+R+Q E + D P A P K D +L W A I G GT + GG++ + + +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 91 DYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLH 148
+YP KPPKV F YH NV +G + L IL + W PA+T+ +++L V+ + +P+ +
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPN 126
Query: 149 NPIVPGIAHLYLEDKAKHDQ 168
+P + +KA++D+
Sbjct: 127 SPAQEPAWRSFSRNKAEYDK 146
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD----NLYNWVATIIGPAGTPYQGGIFFLDITFPTD 91
+RI+RE E+ + + K D N I GP TPY+GG + L+I P
Sbjct: 8 QRIKREFKEV-LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 66
Query: 92 YPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNP 150
YPF PPKV F+T+I+H N+ S G + LDILKD W+ A+T+ VLL+++++ +P
Sbjct: 67 YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 126
Query: 151 IVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
+A+ Y ++ Q A W +A
Sbjct: 127 QDAVVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD----NLYNWVATIIGPAGTPYQGGIFFLDITFPTD 91
+RI+RE E+ + + K D N I GP TPY+GG + L+I P
Sbjct: 9 QRIKREFKEV-LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 67
Query: 92 YPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNP 150
YPF PPKV F+T+I+H N+ S G + LDILKD W+ A+T+ VLL+++++ +P
Sbjct: 68 YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 127
Query: 151 IVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
+A+ Y ++ Q A W +A
Sbjct: 128 QDAVVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD----NLYNWVATIIGPAGTPYQGGIFFLDITFPTD 91
+RI+RE E+ + + K D N I GP TPY+GG + L+I P
Sbjct: 24 QRIKREFKEV-LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 82
Query: 92 YPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNP 150
YPF PPKV F+T+I+H N+ S G + LDILKD W+ A+T+ VLL+++++ +P
Sbjct: 83 YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 142
Query: 151 IVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
+A+ Y ++ Q A W +A
Sbjct: 143 QDAVVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD----NLYNWVATIIGPAGTPYQGGIFFLDITFPTD 91
+RI+RE E+ + + K D N I GP TPY+GG + L+I P
Sbjct: 11 QRIKREFKEV-LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 69
Query: 92 YPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNP 150
YPF PPKV F+T+I+H N+ S G + LDILKD W+ A+T+ VLL+++++ +P
Sbjct: 70 YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 129
Query: 151 IVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
+A+ Y ++ Q A W +A
Sbjct: 130 QDAVVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGD----NLYNWVATIIGPAGTPYQGGIFFLDITFPTD 91
+RI+RE E+ + + K D N I GP TPY+GG + L+I P
Sbjct: 60 QRIKREFKEV-LKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPET 118
Query: 92 YPFKPPKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNP 150
YPF PPKV F+T+I+H N+ S G + LDILKD W+ A+T+ VLL+++++ +P
Sbjct: 119 YPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDP 178
Query: 151 IVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
+A+ Y ++ Q A W +A
Sbjct: 179 QDAVVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 37 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
RIQ+E+ +PP +C+ +N+ W+ +G T Y ++ L I FP DYP KP
Sbjct: 10 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69
Query: 97 PKVAFLTR-IYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFT 143
P V FL + H +V S G++ L +L D ++P+L+I+ ++L++ SM +
Sbjct: 70 PIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 37 RIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
RIQ+++ ELN+ P+ C D+L N+ +I P Y+ G F YP
Sbjct: 30 RIQKDINELNL--PKTCDISFSDPDDLLNF-KLVICPDEGFYKSGKFVFSFKVGQGYPHD 86
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV T +YH N+D GNV L+IL++ W P LTI ++ ++ +F P+ +P+
Sbjct: 87 PPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEA 146
Query: 156 AHLYLEDKAKHDQ 168
A + ++ +Q
Sbjct: 147 AEVLQNNRRLFEQ 159
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 37 RIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
RIQ+++ ELN+ P+ C D+L N+ +I P Y+ G F YP
Sbjct: 10 RIQKDINELNL--PKTCDISFSDPDDLLNF-KLVICPDEGFYKSGKFVFSFKVGQGYPHD 66
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGI 155
PPKV T +YH N+D GNV L+IL++ W P LTI ++ ++ +F P+ +P+
Sbjct: 67 PPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEA 126
Query: 156 AHLYLEDKAKHDQ 168
A + ++ +Q
Sbjct: 127 AEVLQNNRRLFEQ 139
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 71 GPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA-GNVNLDILKDSWSPAL 129
GP GT Y+GGI+ + +T P DYPF P + F+ ++ H NVD A G+V LD++ +W+P
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
Query: 130 TITKVL-LAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
++ V + + + T P+ +P+ A L ++DK +++ E+ +A
Sbjct: 97 SLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
+LYNW I GP T Y+GG F + FP DYP+ PP FLT+++H N+ G+V + I
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 121 L-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 150
L + W+P + +LL+V S+ P+ +P
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 138
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDI 120
+LYNW I GP T Y+GG F + FP DYP+ PP FLT+++H N+ G+V + I
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 121 L-------------KDSWSPALTITKVLLAVRSMFTNPSLHNP 150
L + W+P + +LL+V S+ P+ +P
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSP 135
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA-GNVNLD 119
L +V GP GTPY+GG++ + + P YPFK P + F+ +I+H N+D A G V LD
Sbjct: 49 GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLD 108
Query: 120 ILKDSWSPALTITKVLLA-VRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178
++ +W+ +T + + + + P+ +P+ A +YL ++ Q E+ ++A
Sbjct: 109 VINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 168
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Query: 37 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
RIQ+E+ +PP +C+ N+ W+ +G T Y ++ + I FP +YP KP
Sbjct: 24 RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83
Query: 97 PKVAFLTR-IYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTN 144
P V FL + H +V S G++ L +L D ++P+L+I+ ++L++ SM ++
Sbjct: 84 PIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSS 132
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 40 REMAELNMDPPQDCSAGPK---GDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKP 96
R MD + C++ K D + + GP GTPY+ G + L + P+DYPFK
Sbjct: 12 RSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 71
Query: 97 PKVAFLTRIYHCNVDS-AGNVNLDILKDSWSPAL---TITKVLLAVRSMFTNPSLHNPIV 152
P + F RI H NVD +G+V LD++ +W+P I V L + NPS +P+
Sbjct: 72 PSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPS--DPLN 129
Query: 153 PGIAHLYLEDKAKHDQLAAE 172
AHL D+ D L E
Sbjct: 130 VQAAHLLHADRVGFDALLRE 149
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKG--DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYP 93
KR+Q+E+ L DPP + K +++ W+ + G GT Y+G F L F + YP
Sbjct: 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84
Query: 94 FKPPKVAFLTRI--YHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFT 143
F P+V F H +V S G++ L IL + WSPAL++ V L++ SM +
Sbjct: 85 FDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 38 IQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPP 97
+ R+ +L + + +A P +++ W I G + +QG +F L I F ++Y + PP
Sbjct: 28 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPP 87
Query: 98 KVAFLTRIYHCNVD-SAGNVNLDILK--DSWSPALTITKVLLAVRSMFTNPSLHNPIVPG 154
V F+T +H NVD G +D L + W+ T++ +LLA++ M +NP L NP+
Sbjct: 88 VVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLE 147
Query: 155 IAHLYLEDKA 164
A + ++D++
Sbjct: 148 AARILVKDES 157
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 37 RIQREMAELNMDP-----------PQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLD 85
R++R++ L++ P D S PK + I+ P Y G +
Sbjct: 33 RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPK-------LEVIVRPDEGYYNYGSINFN 85
Query: 86 ITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNP 145
+ F YP +PPKV L +I+H N+D GNV L+IL++ WSPAL + ++ + +F P
Sbjct: 86 LDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEP 145
Query: 146 SLHNPIVPGIAHLYLEDKAK 165
+ ++P+ A L E + +
Sbjct: 146 NPNDPLNKDAAKLLCEGEKE 165
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL-TRIYHCNVDSA-GNVNL 118
+L W A I GP+ TPY+ F + I P+ YP PPK++F+ I HCNV SA G + L
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 119 DILK-DSWSPALTITKVLLAVRSMFTNPSLHNPI 151
+ILK + W+P + + AV + P +P+
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPL 139
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL-TRIYHCNVDSA-GNVNL 118
+L W A I GP+ TPY+ F + I P+ YP PPK++F+ I HCNV SA G + L
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 119 DILK-DSWSPALTITKVLLAVRSMFTNPSLHNPI 151
+ILK + W+P + + AV + P +P+
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPL 139
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
K + +E+AEL + P C N + + P YQGG F + P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLH 148
PPKV LT+I+H N+ G + L +L++ W+P T+ V+ + S+FT+ +
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFD 136
Query: 149 NPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179
+P+ A +L DK ++ R+A+
Sbjct: 137 DPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
K + +E+AEL + P C N + + P YQGG F + P Y
Sbjct: 17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMV 76
Query: 96 PPKVAFLTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLH 148
PPKV LT+I+H N+ G + L +L++ W+P T+ V+ + S+FT+ +
Sbjct: 77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFD 136
Query: 149 NPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179
+P+ A +L DK ++ R+A+
Sbjct: 137 DPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFK 95
+R++++ + DP A P N+ W + GP TPY+GG + + FP ++PFK
Sbjct: 17 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFK 76
Query: 96 PPKVAFLT--RIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSM 141
PP + +T + CN ++ D D+W+PA +++ +L + S
Sbjct: 77 PPSIYMITPNGRFKCNTRLCLSIT-DFHPDTWNPAWSVSTILTGLLSF 123
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 61 NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL-TRIYHCNVDSA-GNVNL 118
+L W A I GP+ TPY+ F + I P+ YP PPK++F+ I H NV SA G + L
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 119 DILK-DSWSPALTITKVLLAVRSMFTNPSLHNPI 151
+ILK + W+P + + AV + P +P+
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPL 139
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV---NL 118
L NW TI G GT ++ I+ L I +YP PP V F T+I VD+ G V NL
Sbjct: 58 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 117
Query: 119 DILKDSWSPALTITKVLLAVR 139
ILK+ W+ TI +L+++R
Sbjct: 118 HILKN-WNRNYTIETILISLR 137
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV---NL 118
L NW TI G GT ++ I+ L I +YP PP V F T+I VD+ G V NL
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 113
Query: 119 DILKDSWSPALTITKVLLAVR 139
ILK+ W+ TI +L+++R
Sbjct: 114 HILKN-WNRNYTIETILISLR 133
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 60 DNLYNWVATIIGPAGTPYQGG--IFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNVN 117
D +YNW+ + PA + Y G + L + F DYP +PP V F+T +Y V G +
Sbjct: 47 DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGIC 106
Query: 118 LDILKDSWSPALTITKVL-LAVRSMFTN-PSLHNPIVPGIAHLYLE 161
++ D W+P + V+ L + +F+ S + V A YLE
Sbjct: 107 DRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLE 152
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 69 IIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHC-----NVDSAGNVNLDIL-- 121
I GPA TPY G F D+ FP DYP PP V T H N+ + G V L IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 122 -----KDSWSPAL-TITKVLLAVRSM 141
++ W+P + +VL++V+S+
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSL 201
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 50 PQDCSAGPKGDN---LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI- 105
P+ CS G + + W TI+GP + ++ I+ L I +YP PPKV F+++I
Sbjct: 24 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83
Query: 106 YHCNVDSAGNVNLDI--LKDSWSPALTITKVLLAVRSMFTNPS 146
C + G V D L+D W A T+ +LL +R P+
Sbjct: 84 LPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMATPA 125
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 50 PQDCSAGPKGDN---LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI- 105
P+ CS G + + W TI+GP + ++ I+ L I +YP PPKV F+++I
Sbjct: 23 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 82
Query: 106 YHCNVDSAGNVNLDI--LKDSWSPALTITKVLLAVRSMFTNPS 146
C + G V D L+D W A T+ +LL +R P+
Sbjct: 83 LPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMATPA 124
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV----N 117
L W IIGP T Y+ I+ L I YP PP V F+T+I V+S+ V
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 127
Query: 118 LDILKDSWSPALTITKVLLAVRSMF 142
+ +L W + +I VL +R +
Sbjct: 128 ISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV----N 117
L W IIGP T Y+ I+ L I YP PP V F+T+I V+S+ V
Sbjct: 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 117
Query: 118 LDILKDSWSPALTITKVLLAVRSMF 142
+ +L W + +I VL +R +
Sbjct: 118 ISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV-DSAGNVNLDI 120
L W IIGP T Y+ I+ L + YP PP V F+T+I + +S+G V+
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 96
Query: 121 LK--DSWSPALTITKVLLAVRSMF 142
+ W + +I VL +R +
Sbjct: 97 IPVLAKWQNSYSIKVVLQELRRLM 120
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV-DSAGNVNLDI 120
L W IIGP T Y+ I+ L + YP PP V F+T+I + +S+G V+
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 97
Query: 121 LK--DSWSPALTITKVLLAVRSMF 142
+ W + +I VL +R +
Sbjct: 98 IPVLAKWQNSYSIKVVLQELRRLM 121
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV-DSAGNVNLDI 120
L W IIGP T Y+ I+ L + YP PP V F+T+I + +S+G V+
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 102
Query: 121 LK--DSWSPALTITKVLLAVRSMF 142
+ W + +I VL +R +
Sbjct: 103 IPVLAKWQNSYSIKVVLQELRRLM 126
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV----N 117
L W I+GP T Y+ I+ L I YP PP V F+T+I V+S+ V
Sbjct: 40 LTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 99
Query: 118 LDILKDSWSPALTITKVLLAVRSMF 142
+ +L W + +I VL +R +
Sbjct: 100 ISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 62 LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV-DSAGNVNLDI 120
L W IIGP T Y+ I+ L + YP PP V F+T+I + +S+G V+
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 107
Query: 121 LK--DSWSPALTITKVLLAVRSMF 142
+ W + +I VL +R +
Sbjct: 108 IPVLAKWQNSYSIKVVLQELRRLM 131
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 83 FLDITFPTDYPFKPPKVAFLTRIYHCN-VDSAGNVNLDIL-KDSWSPALTITKVLLAVRS 140
L+ +F ++PF PP V ++ + V G + +++L K WS A +I V++ + +
Sbjct: 71 LLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISA 130
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 82 FFLDITFPTDYPFKPPKVAFLTRIYHCN-VDSAGNVNLDIL-KDSWSPALTITKVLLAVR 139
L+ +F ++PF PP V + + V G + +++L K WS A +I V++ +
Sbjct: 91 ILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQIN 150
Query: 140 SMFT 143
+
Sbjct: 151 ATLV 154
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 124 SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179
S P +T T+ L ++ NP ++ IAH + K D+ ++L F +
Sbjct: 256 SIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAIAHEMISKKLYDDKFIQGYSLGFEE 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,040,607
Number of Sequences: 62578
Number of extensions: 201112
Number of successful extensions: 482
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 122
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)