Query 030296
Match_columns 179
No_of_seqs 155 out of 1142
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 3.5E-56 7.7E-61 324.8 14.9 145 35-179 3-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2E-54 4.3E-59 322.2 17.5 146 34-179 6-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 4.9E-51 1.1E-55 306.7 18.3 146 34-179 3-148 (152)
4 PLN00172 ubiquitin conjugating 100.0 1.8E-50 3.8E-55 302.3 18.1 145 35-179 3-147 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 3.8E-50 8.1E-55 285.7 14.5 144 33-176 4-147 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 5.8E-46 1.3E-50 271.5 15.8 144 33-176 5-162 (171)
7 KOG0418 Ubiquitin-protein liga 100.0 3.3E-45 7.2E-50 275.0 14.3 146 34-179 4-153 (200)
8 KOG0424 Ubiquitin-protein liga 100.0 2.6E-44 5.7E-49 259.4 15.2 147 33-179 4-157 (158)
9 KOG0421 Ubiquitin-protein liga 100.0 2.4E-44 5.3E-49 259.5 13.5 146 31-177 27-172 (175)
10 PF00179 UQ_con: Ubiquitin-con 100.0 3.2E-44 6.9E-49 266.6 14.2 138 37-174 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.6E-43 3.6E-48 263.1 15.9 139 36-174 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 9.1E-43 2E-47 260.3 17.4 143 36-178 1-145 (145)
13 KOG0426 Ubiquitin-protein liga 100.0 3.7E-43 7.9E-48 250.1 14.1 146 32-177 3-162 (165)
14 KOG0422 Ubiquitin-protein liga 100.0 3.7E-40 7.9E-45 236.7 13.6 146 33-179 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 8.9E-39 1.9E-43 236.7 10.7 144 33-179 3-148 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 9.5E-39 2.1E-43 237.0 10.7 147 29-178 24-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 4.5E-37 9.7E-42 228.2 8.2 148 32-179 9-156 (223)
18 KOG0427 Ubiquitin conjugating 100.0 2.6E-31 5.6E-36 189.3 11.2 122 31-153 13-136 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 4.1E-29 9E-34 191.7 14.6 115 30-146 2-119 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.9E-24 4.1E-29 166.6 13.6 144 33-177 19-168 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 5.5E-23 1.2E-27 160.9 9.5 111 30-143 8-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 8.9E-18 1.9E-22 153.3 7.4 112 33-144 851-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 1.4E-15 3E-20 139.2 10.9 117 29-145 278-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 2.2E-15 4.8E-20 108.3 7.5 113 32-144 4-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 2.7E-09 5.8E-14 74.9 6.0 91 82-173 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 6.1E-08 1.3E-12 71.3 7.2 68 78-145 34-107 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.3 1.1E-06 2.4E-11 64.3 4.4 99 32-135 23-135 (161)
28 PF05743 UEV: UEV domain; Int 98.2 3.7E-06 7.9E-11 60.9 5.8 78 62-144 32-117 (121)
29 KOG3357 Uncharacterized conser 97.5 0.00041 8.9E-09 50.2 6.2 98 31-134 25-137 (167)
30 KOG2391 Vacuolar sorting prote 97.3 0.0013 2.8E-08 54.9 7.7 80 61-145 51-138 (365)
31 PF14462 Prok-E2_E: Prokaryoti 96.6 0.038 8.2E-07 40.0 9.8 90 51-143 12-120 (122)
32 PF05773 RWD: RWD domain; Int 96.5 0.0064 1.4E-07 42.4 5.3 69 36-105 4-74 (113)
33 PF14457 Prok-E2_A: Prokaryoti 96.1 0.008 1.7E-07 45.7 4.1 62 83-144 56-126 (162)
34 smart00591 RWD domain in RING 95.9 0.044 9.6E-07 37.8 6.9 26 79-104 40-65 (107)
35 PF09765 WD-3: WD-repeat regio 87.4 0.71 1.5E-05 38.3 3.6 88 32-142 98-186 (291)
36 KOG0309 Conserved WD40 repeat- 85.2 3.9 8.5E-05 38.2 7.3 70 34-104 421-491 (1081)
37 KOG4018 Uncharacterized conser 81.5 4.9 0.00011 31.8 5.7 20 81-100 50-69 (215)
38 PF06113 BRE: Brain and reprod 70.6 13 0.00028 31.5 5.7 60 76-141 61-123 (333)
39 PF14460 Prok-E2_D: Prokaryoti 61.6 13 0.00029 28.3 3.9 42 103-147 90-135 (175)
40 cd00421 intradiol_dioxygenase 52.5 20 0.00043 26.5 3.4 26 78-103 64-90 (146)
41 smart00340 HALZ homeobox assoc 50.9 14 0.00031 21.5 1.9 17 33-49 19-35 (44)
42 KOG0662 Cyclin-dependent kinas 50.0 15 0.00033 28.9 2.5 55 94-148 167-225 (292)
43 cd03457 intradiol_dioxygenase_ 47.9 25 0.00054 27.3 3.4 26 78-103 85-110 (188)
44 PF08203 RNA_polI_A14: Yeast R 46.8 9.7 0.00021 25.2 0.8 23 23-45 49-71 (76)
45 PRK05414 urocanate hydratase; 43.9 70 0.0015 28.9 5.9 26 153-178 282-307 (556)
46 PF06113 BRE: Brain and reprod 42.4 30 0.00065 29.3 3.3 25 79-103 305-329 (333)
47 cd03459 3,4-PCD Protocatechuat 39.8 41 0.00089 25.3 3.4 25 79-103 72-101 (158)
48 TIGR01228 hutU urocanate hydra 39.2 99 0.0021 27.9 6.1 26 153-178 273-298 (545)
49 PF03366 YEATS: YEATS family; 38.7 1E+02 0.0022 20.6 4.9 42 63-106 2-43 (84)
50 COG2987 HutU Urocanate hydrata 33.2 1.3E+02 0.0027 27.0 5.7 26 153-178 282-307 (561)
51 KOG4445 Uncharacterized conser 31.6 58 0.0013 27.4 3.3 24 81-104 46-69 (368)
52 PF14135 DUF4302: Domain of un 31.5 1.3E+02 0.0028 23.9 5.3 70 34-114 10-103 (235)
53 PF11333 DUF3135: Protein of u 30.8 1E+02 0.0022 20.6 3.9 23 154-176 8-30 (83)
54 KOG1047 Bifunctional leukotrie 30.0 48 0.001 30.2 2.7 29 75-104 248-279 (613)
55 PF12018 DUF3508: Domain of un 29.6 75 0.0016 26.1 3.7 30 149-178 237-266 (281)
56 TIGR03737 PRTRC_B PRTRC system 28.7 99 0.0021 24.8 4.1 32 108-143 139-171 (228)
57 PF12652 CotJB: CotJB protein; 28.1 1.3E+02 0.0029 19.8 4.0 30 149-178 25-54 (78)
58 TIGR02423 protocat_alph protoc 27.4 80 0.0017 24.6 3.3 25 78-102 95-124 (193)
59 PF01175 Urocanase: Urocanase; 27.3 99 0.0021 27.9 4.2 26 153-178 272-297 (546)
60 cd03463 3,4-PCD_alpha Protocat 25.6 92 0.002 24.1 3.3 24 79-102 92-120 (185)
61 COG0544 Tig FKBP-type peptidyl 25.0 1.6E+02 0.0034 26.1 5.0 14 81-94 210-223 (441)
62 KOG3285 Spindle assembly check 24.8 1.1E+02 0.0024 23.7 3.5 58 31-99 117-174 (203)
63 PF04881 Adeno_GP19K: Adenovir 24.5 80 0.0017 23.1 2.6 21 58-78 43-63 (139)
64 cd07981 TAF12 TATA Binding Pro 24.5 2E+02 0.0043 18.4 4.5 42 137-178 6-47 (72)
65 PF09280 XPC-binding: XPC-bind 23.1 1.3E+02 0.0029 18.6 3.1 21 151-171 34-54 (59)
66 PF13950 Epimerase_Csub: UDP-g 23.1 78 0.0017 19.7 2.1 19 123-141 36-54 (62)
67 KOG0700 Protein phosphatase 2C 22.2 2.1E+02 0.0046 24.9 5.1 30 87-116 303-332 (390)
68 PF06586 TraK: TraK protein; 22.1 2.9E+02 0.0064 21.6 5.8 54 30-86 137-191 (234)
69 KOG3696 Aspartyl beta-hydroxyl 21.9 1.9E+02 0.0042 24.4 4.7 53 61-113 269-326 (334)
70 PRK11700 hypothetical protein; 21.9 2.9E+02 0.0064 21.5 5.4 70 61-137 87-184 (187)
71 PF11886 DUF3406: Domain of un 21.6 1.7E+02 0.0036 24.2 4.2 34 67-102 169-202 (273)
72 PF00845 Gemini_BL1: Geminivir 21.3 2.3E+02 0.005 23.2 4.8 46 60-106 100-154 (276)
73 KOG0177 20S proteasome, regula 20.5 50 0.0011 25.8 0.9 31 112-142 134-164 (200)
74 cd05845 Ig2_L1-CAM_like Second 20.3 2.1E+02 0.0046 19.4 4.0 26 77-104 16-41 (95)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-56 Score=324.80 Aligned_cols=145 Identities=60% Similarity=1.144 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCC
Q 030296 35 GKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAG 114 (179)
Q Consensus 35 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 114 (179)
.+||.+|+++|.+++++|+++.++++|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+..|
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G 82 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG 82 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 115 NVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 115 ~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.||+|+|.+.|+|+++|..||.+|++||.+||+++|++.++|++|+.|+++|+++||+||++||+
T Consensus 83 ~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 83 RICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999996
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-54 Score=322.16 Aligned_cols=146 Identities=50% Similarity=0.939 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCC-CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
+.+||++|+++|+++++.++++.+..+ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.++||||||+.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 899999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 ~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.|||++|.+.|+|+++|++||.+|+++|.+||.++|+|.|||++|++|+++|.++||+++++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=4.9e-51 Score=306.67 Aligned_cols=146 Identities=41% Similarity=0.829 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA 113 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 113 (179)
+.+||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 114 GNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 114 G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|.||+++|.++|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.8e-50 Score=302.31 Aligned_cols=145 Identities=54% Similarity=1.089 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCC
Q 030296 35 GKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAG 114 (179)
Q Consensus 35 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 114 (179)
.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.+|
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G 82 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG 82 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 115 NVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 115 ~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|.+|+++|+++||+|+++||.
T Consensus 83 ~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 83 SICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred EEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999983
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-50 Score=285.69 Aligned_cols=144 Identities=34% Similarity=0.725 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
.+-+||++|++.|+++++.|++..|.++|++.|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|||||+.
T Consensus 4 pArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya 83 (152)
T KOG0419|consen 4 PARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYA 83 (152)
T ss_pred hHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 030296 113 AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 176 (179)
Q Consensus 113 ~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 176 (179)
+|.+|+|+|...|+|.|++.+||.+||+||.+|++.+|+|.|||++|++|+.+|++.++..+.+
T Consensus 84 ~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 84 DGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred CCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998765
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-46 Score=271.54 Aligned_cols=144 Identities=29% Similarity=0.613 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecC-CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKG-DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
.+..-|+++|++|++++.+|+.+...+ .|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|+++||||||+
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy 84 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY 84 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence 356779999999999999999998765 5999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 030296 112 SAGNVNLDILK-------------DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 176 (179)
Q Consensus 112 ~~G~iCl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 176 (179)
++|.+|+++|. +.|.|..|+++||++|.+||.+||.++|+|-+||+.|++|+++|.+++++++++
T Consensus 85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999995 589999999999999999999999999999999999999999999999999875
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-45 Score=275.03 Aligned_cols=146 Identities=40% Similarity=0.705 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhhcCC---CCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc
Q 030296 34 SGKRIQREMAELNMDP---PQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV 110 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 110 (179)
+.+||++|++++.+++ ..||.+....+|+.+..+.|.||++||||||+|.++|++|++|||+||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 7899999999999988 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 111 D-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 111 ~-~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+ .+|.||||+|.+.|.+++|+.++|++||++|..|++.+|.+.++|++|.+|++.|.+.||.|+..||+
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 8 69999999999999999999999999999999999999999999999999999999999999999985
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-44 Score=259.35 Aligned_cols=147 Identities=33% Similarity=0.647 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecC-----CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKG-----DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
.++.||++|-+.+.++.+-|+++.|.. .|++.|.+.|.|+.+|+||||.|.+.+.||++||.+||++.|.++.||
T Consensus 4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~H 83 (158)
T KOG0424|consen 4 IALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFH 83 (158)
T ss_pred hHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcC
Confidence 458999999999999999999998763 579999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCCC--CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 108 CNVDSAGNVNLDILKDS--WSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~~~--W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|||+.+|.|||++|.+. |+|+.||.+||.+|+.||.+||+.+|+|.||...|.+|+.+|+++||.++++||.
T Consensus 84 PNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 84 PNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999954 9999999999999999999999999999999999999999999999999999985
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-44 Score=259.52 Aligned_cols=146 Identities=38% Similarity=0.680 Sum_probs=141.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV 110 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 110 (179)
.....+||++|+..|.....+||++.|++||++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|+|+.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030296 111 DSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 177 (179)
Q Consensus 111 ~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 177 (179)
+..|.||||+|.+.|+..|++++||.+||+||-+||.++|+|..||+++. |.++|++.+..+.+++
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999998 9999999999887654
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=3.2e-44 Score=266.60 Aligned_cols=138 Identities=48% Similarity=0.967 Sum_probs=128.9
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCC-CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCCc
Q 030296 37 RIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGN 115 (179)
Q Consensus 37 RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 115 (179)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCC-CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 030296 116 VNLDILKD-SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 174 (179)
Q Consensus 116 iCl~~l~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~ 174 (179)
||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|+++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999984 599999999999999999999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.6e-43 Score=263.13 Aligned_cols=139 Identities=51% Similarity=0.954 Sum_probs=135.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCCc
Q 030296 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGN 115 (179)
Q Consensus 36 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~ 115 (179)
+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCC-CCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 030296 116 VNLDILKDS-WSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 174 (179)
Q Consensus 116 iCl~~l~~~-W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~ 174 (179)
||+++|... |+|+++|.+||.+|+++|.+|+.++|+|.+||++|++|+++|+++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999976 99999999999999999999999999999999999999999999999974
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=9.1e-43 Score=260.26 Aligned_cols=143 Identities=51% Similarity=0.968 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCC-CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCC
Q 030296 36 KRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAG 114 (179)
Q Consensus 36 ~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 114 (179)
+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|.+.|.||++||++||+|+|.+++|||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999988775 999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 115 NVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 115 ~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.||+++|. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.+|++.|+++|++++++|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999985
No 13
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-43 Score=250.13 Aligned_cols=146 Identities=32% Similarity=0.681 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeec-CCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPK-GDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV 110 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~-~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 110 (179)
..++|||++||++|..++++||.+.|. +||+++|.+.|.||++|+|+||+|..++.||.|||.+||+++|...+|||||
T Consensus 3 ~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNi 82 (165)
T KOG0426|consen 3 GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNI 82 (165)
T ss_pred hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcc
Confidence 358999999999999999999999886 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030296 111 DSAGNVNLDILK-------------DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 177 (179)
Q Consensus 111 ~~~G~iCl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 177 (179)
+.+|.+|+++|. +.|+|.++++.||.++.+||.+||.++++|.+|+.++++|+++|+++|+..++|-
T Consensus 83 y~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKt 162 (165)
T KOG0426|consen 83 YPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKT 162 (165)
T ss_pred cCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 999999999985 6899999999999999999999999999999999999999999999999998873
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-40 Score=236.75 Aligned_cols=146 Identities=36% Similarity=0.696 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCeE-EeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCS-AGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
.+.+||++|+.+|++++...+. +..++.|++.|++.|. |++-||..|.|.++|.||.+|||+||.|.|.|+||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 3679999999999998876442 3557789999999999 8999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+.|.+|+.++. ++|.|+...++||+.|..++.+|+++.|++.|+|..|.+|+..|.++|.++|+||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 99999999998 999999999999999999999999999999999999999999999999999999984
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-39 Score=236.67 Aligned_cols=144 Identities=27% Similarity=0.651 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc-
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD- 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~- 111 (179)
...||+..|+.+|.. .+..+....+++.+++|.+.||.++||+||++++.+.+|++||++.|.|.|.++||||||+
T Consensus 3 ~~~rRid~Dv~KL~~---s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe 79 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLM---SDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDE 79 (189)
T ss_pred CcccchhhHHHHHHh---cCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchh
Confidence 346899999999986 6678888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHH-HHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAV-RSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.|||+.++..|+|.+.+..|+..+ -.||..||+.||+|.|||.+|..++++|++++++|+++||+
T Consensus 80 ~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 80 ASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred ccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999765 45899999999999999999999999999999999999995
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-39 Score=236.97 Aligned_cols=147 Identities=32% Similarity=0.615 Sum_probs=130.4
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCeEEe-ec-CCCcc--ceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 29 TSVSASGKRIQREMAELNMDPPQDCSAG-PK-GDNLY--NWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~~~~~~~~~-~~-~~~~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
.+.+.+.-||++|+.++.- +++++.. +. .+++. ++.++|. |+++.|+||.|.|.+.+|+.||+.||+|.|+|+
T Consensus 24 ~~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred ccccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 4455677888888877765 5555532 22 34444 4899999 999999999999999999999999999999999
Q ss_pred cccccccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 105 IYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 105 i~HPnv~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
||||||+.+|.|||++|+++|+|..+|.+|+.+|+.||.+|+++||+|.|||+++++|++.|+..||+....++
T Consensus 101 V~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 101 VYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=228.19 Aligned_cols=148 Identities=30% Similarity=0.579 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
...++.|.+|++.+...+|.||.|.++++|+....+.|.||.+|||++|.|+..+.+..|||.+||+-.|+|+||||||-
T Consensus 9 p~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred hHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||.+.|..+|.|+.+|..||..|+++|..|++++.+|.||++++.++.++|.+.||.++.-||+
T Consensus 89 aNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 89 ANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred cCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=189.26 Aligned_cols=122 Identities=33% Similarity=0.652 Sum_probs=112.1
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc-cccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI-YHCN 109 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPn 109 (179)
+..+.+||++|+.+++.++|.|+... ..||+.+|.+.+.|.++|.|+|.+|.++++||+.||++.|.|.|..++ .||+
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPH 91 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPH 91 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCc
Confidence 34689999999999999999999987 689999999999999999999999999999999999999999999986 7999
Q ss_pred ccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCC-CCCCCCCH
Q 030296 110 VDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNP-SLHNPIVP 153 (179)
Q Consensus 110 v~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p-~~~~p~n~ 153 (179)
|+++|.|||++|.+.|+|++++.+|..+|.+||.+- ....|.+.
T Consensus 92 iYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn 136 (161)
T KOG0427|consen 92 IYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDN 136 (161)
T ss_pred eecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCcc
Confidence 999999999999999999999999999999999853 44444443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.1e-29 Score=191.70 Aligned_cols=115 Identities=33% Similarity=0.640 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccc
Q 030296 30 SVSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCN 109 (179)
Q Consensus 30 ~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 109 (179)
+...+.+||++||+.|.+++.++|.+.|.++|+.+||.+|.||++|||+||.|+.+|.||++||++||.|+++||-- .
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG--R 79 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG--R 79 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC--c
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999731 1
Q ss_pred ccCCCcEeccCCC---CCCCCcCCHHHHHHHHHHhhcCCC
Q 030296 110 VDSAGNVNLDILK---DSWSPALTITKVLLAVRSMFTNPS 146 (179)
Q Consensus 110 v~~~G~iCl~~l~---~~W~p~~~i~~il~~i~~ll~~p~ 146 (179)
+-.+-++||++.. +.|.|.|++.+||.+|.++|.+..
T Consensus 80 FktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 80 FKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred eecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCC
Confidence 2244589998765 999999999999999999998653
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.9e-24 Score=166.57 Aligned_cols=144 Identities=20% Similarity=0.326 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeeccccccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF--KPPKVAFLTRIYHCNV 110 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnv 110 (179)
..-.-|+.||..+.+.+.+||++.|.-.|-+.|.++|++ ..++|.||+|+|.|.+|++||. ..|+|.|.+++|||+|
T Consensus 19 ~qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~i 97 (258)
T KOG0429|consen 19 LQEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLI 97 (258)
T ss_pred HHHHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeecccccccc
Confidence 345668889999999999999999999999999999995 6679999999999999999995 8999999999999999
Q ss_pred c-CCCcEeccCCCCCCCCcC-CHHHHHHHHHHhhcCCCCCCC--CCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030296 111 D-SAGNVNLDILKDSWSPAL-TITKVLLAVRSMFTNPSLHNP--IVPGIAHLYLEDKAKHDQLAAEWTLRF 177 (179)
Q Consensus 111 ~-~~G~iCl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~~~p--~n~~a~~~~~~d~~~f~~~ar~~~~~~ 177 (179)
. .++.+|++-....|.... .|++||..|+..|.+|+.+.+ .|+||+.+|.+++++|.++|+++++..
T Consensus 98 cp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 98 CPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKAS 168 (258)
T ss_pred CCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9 699999988877798765 799999999999999987766 499999999999999999999998753
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.5e-23 Score=160.85 Aligned_cols=111 Identities=36% Similarity=0.668 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccc
Q 030296 30 SVSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCN 109 (179)
Q Consensus 30 ~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 109 (179)
..+++.|||++|.++|+ ++...+.+.|.+||+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+--..-
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE 86 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE 86 (314)
T ss_pred ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee
Confidence 45678999999999998 67778888999999999999999999999999999999999999999999999998743322
Q ss_pred ccCCCcEeccCCC---CCCCCcCCHHHHHHHHHHhhc
Q 030296 110 VDSAGNVNLDILK---DSWSPALTITKVLLAVRSMFT 143 (179)
Q Consensus 110 v~~~G~iCl~~l~---~~W~p~~~i~~il~~i~~ll~ 143 (179)
.+-+|||++.. +.|.|+|+|.+.|..|..+|-
T Consensus 87 --~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 87 --VNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred --eCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 45589999876 899999999999999999885
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.9e-18 Score=153.27 Aligned_cols=112 Identities=34% Similarity=0.625 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccc--cccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR--IYHCNV 110 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnv 110 (179)
...+..+.|++-|..+.+.||.|...++.+..+.+.|.||.+|||.+|.|.|.|.||++||.+||.|...+- .++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 445666777888888889999999999999999999999999999999999999999999999999999985 689999
Q ss_pred cCCCcEeccCCC-------CCCCCcCCHHHHHHHHHHhhcC
Q 030296 111 DSAGNVNLDILK-------DSWSPALTITKVLLAVRSMFTN 144 (179)
Q Consensus 111 ~~~G~iCl~~l~-------~~W~p~~~i~~il~~i~~ll~~ 144 (179)
+.+|++|+++|. +.|+|+-+|.+||.+||.|+-.
T Consensus 931 y~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred ccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999999996 7899999999999999998754
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.4e-15 Score=139.16 Aligned_cols=117 Identities=32% Similarity=0.619 Sum_probs=108.4
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccc---c
Q 030296 29 TSVSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR---I 105 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i 105 (179)
.......+|+++|++-+.++.+.|+.+.+.+.++...++.|.||.+|||++|+|.|+|.||..||..||.|.+++. .
T Consensus 278 ~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 278 PHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred ccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeecccee
Confidence 3344678999999999999999999999999999999999999999999999999999999999999999999987 6
Q ss_pred ccccccCCCcEeccCCC-------CCCCCc-CCHHHHHHHHHHhhcCC
Q 030296 106 YHCNVDSAGNVNLDILK-------DSWSPA-LTITKVLLAVRSMFTNP 145 (179)
Q Consensus 106 ~HPnv~~~G~iCl~~l~-------~~W~p~-~~i~~il~~i~~ll~~p 145 (179)
+.||.+.+|+||+++|. +.|+|. .+|.++|.+|+.++.+.
T Consensus 358 ~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 358 LNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred ecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 89999999999999885 689998 78999999999988754
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.2e-15 Score=108.28 Aligned_cols=113 Identities=31% Similarity=0.459 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhhcCCCCC-eEEeecC-CC--ccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 32 SASGKRIQREMAELNMDPPQD-CSAGPKG-DN--LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~-~~~~~~~-~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
-++..||.+|+.+-++...++ ++..... +| +..|..+|.||+.|+||+.+|.++|.+.++||..||+|+|.+++--
T Consensus 4 vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm 83 (138)
T KOG0896|consen 4 VPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINM 83 (138)
T ss_pred cccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeee
Confidence 356788999998877655444 3444333 33 5589999999999999999999999999999999999999999988
Q ss_pred cccc-CCCcEeccCCC--CCCCCcCCHHHHHHHHHHhhcC
Q 030296 108 CNVD-SAGNVNLDILK--DSWSPALTITKVLLAVRSMFTN 144 (179)
Q Consensus 108 Pnv~-~~G~iCl~~l~--~~W~p~~~i~~il~~i~~ll~~ 144 (179)
+-|+ .+|.+.-..+. .+|+..++++.+|..++.+|..
T Consensus 84 ~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 84 NGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cccccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 8887 67777654443 8999999999999999986654
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.7e-09 Score=74.94 Aligned_cols=91 Identities=19% Similarity=0.397 Sum_probs=69.1
Q ss_pred EEEEEEcCCCCCCCCCeeeecccc-ccccccCCCcEeccCCC-CCCCCcCCHHHHHHHHHHhhcCC--CCCCCCCHHHHH
Q 030296 82 FFLDITFPTDYPFKPPKVAFLTRI-YHCNVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNP--SLHNPIVPGIAH 157 (179)
Q Consensus 82 f~~~i~fp~~YP~~pP~v~f~t~i-~HPnv~~~G~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~p--~~~~p~n~~a~~ 157 (179)
..+.+.|+++||+.||.++...|. --.-|-.+|.||+.+|+ ++|+.+++|+.++++|...+... -...|++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 456788999999999999987764 33445589999999998 89999999999999999999876 35556655544
Q ss_pred HHH--HCHHHHHHHHHHH
Q 030296 158 LYL--EDKAKHDQLAAEW 173 (179)
Q Consensus 158 ~~~--~d~~~f~~~ar~~ 173 (179)
+|. .--+.|+..++.+
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 553 2444566655544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.70 E-value=6.1e-08 Score=71.27 Aligned_cols=68 Identities=29% Similarity=0.595 Sum_probs=61.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeecccc---ccccccCCCcEec---cCCCCCCCCcCCHHHHHHHHHHhhcCC
Q 030296 78 QGGIFFLDITFPTDYPFKPPKVAFLTRI---YHCNVDSAGNVNL---DILKDSWSPALTITKVLLAVRSMFTNP 145 (179)
Q Consensus 78 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnv~~~G~iCl---~~l~~~W~p~~~i~~il~~i~~ll~~p 145 (179)
.|+.+.+.|.||++||..||.|....+. +-|||+.+|.+|+ ....+.|.|.-.+..+|.++..+|.+.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~~ 107 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLEDG 107 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998764 6899999999999 666799999999999999999999843
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.28 E-value=1.1e-06 Score=64.29 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhhc-------CCCCCeEEeecCCCccceEEEEeCCCCCCCCCCE--EEEEEEcCCCCCCCCCeeeec
Q 030296 32 SASGKRIQREMAELNM-------DPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGI--FFLDITFPTDYPFKPPKVAFL 102 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~-------~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~--f~~~i~fp~~YP~~pP~v~f~ 102 (179)
..-..||..||+.|-+ +....+.+.. ..+=..|.+.-- -.|+--. |.+++.+|..||..||.|...
T Consensus 23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW----~~h~l~kYEF~~eFdIP~tYP~t~pEi~lP 97 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCW----YIHNLLKYEFDLEFDIPVTYPTTAPEIALP 97 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEE----EEETTEEEEEEEEEE--TTTTTS----B-G
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEE----EEeeeeeEEEeeecCCCccCCCCCcceecc
Confidence 4678999999998754 1123334432 222234432211 0112222 556666799999999999865
Q ss_pred cc-cccccccCCCcEeccCCC----CCCCCcCCHHHHH
Q 030296 103 TR-IYHCNVDSAGNVNLDILK----DSWSPALTITKVL 135 (179)
Q Consensus 103 t~-i~HPnv~~~G~iCl~~l~----~~W~p~~~i~~il 135 (179)
.- --..-.+.+|+|||+... ..-.|.++|...|
T Consensus 98 eLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 98 ELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp GGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred ccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 32 123445679999999876 3446778887665
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.20 E-value=3.7e-06 Score=60.91 Aligned_cols=78 Identities=28% Similarity=0.559 Sum_probs=53.1
Q ss_pred ccceEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeecccc-----ccccccCCCcEeccCCCCCCCC-cCCHHH
Q 030296 62 LYNWVATIIGPAGTPYQGGIFF--LDITFPTDYPFKPPKVAFLTRI-----YHCNVDSAGNVNLDILKDSWSP-ALTITK 133 (179)
Q Consensus 62 ~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPnv~~~G~iCl~~l~~~W~p-~~~i~~ 133 (179)
+....++|. -.|+|..|. +.|-+|.+||.+||.|...... -+.+|+.+|.|.+..| ++|.+ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 444555554 358888885 5666899999999999876432 2449999999988776 56887 778999
Q ss_pred HHHHHHHhhcC
Q 030296 134 VLLAVRSMFTN 144 (179)
Q Consensus 134 il~~i~~ll~~ 144 (179)
++..+...|..
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999888763
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00041 Score=50.18 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCeee
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGI----------FFLDITFPTDYPFKPPKVA 100 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v~ 100 (179)
...-.+||..||+.|-. +++.+.++-..|.-.-..+.+|-|-|.+ |.+++.+|-.||..+|.+.
T Consensus 25 ~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred chHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 34678999999998854 2222333334443333456777777754 5566667999999999987
Q ss_pred eccc-cccccccCCCcEeccCCC-CCCC---CcCCHHHH
Q 030296 101 FLTR-IYHCNVDSAGNVNLDILK-DSWS---PALTITKV 134 (179)
Q Consensus 101 f~t~-i~HPnv~~~G~iCl~~l~-~~W~---p~~~i~~i 134 (179)
..-- --.-..+.+|.||+.-.. .-|. |.++|...
T Consensus 99 lpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 99 LPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred ccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 5321 111234568999996654 4564 55566544
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0013 Score=54.89 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=61.4
Q ss_pred CccceEEEEeCCCCCCCCCCEEEEE--EEcCCCCCCCCCeeeeccc-----cccccccCCCcEeccCCCCCCC-CcCCHH
Q 030296 61 NLYNWVATIIGPAGTPYQGGIFFLD--ITFPTDYPFKPPKVAFLTR-----IYHCNVDSAGNVNLDILKDSWS-PALTIT 132 (179)
Q Consensus 61 ~~~~w~~~i~Gp~~tpy~gg~f~~~--i~fp~~YP~~pP~v~f~t~-----i~HPnv~~~G~iCl~~l~~~W~-p~~~i~ 132 (179)
+++...++|. .+|.|.+|.+= |-+.+.||..||.|..... --|-+|+.+|.|.|..|. +|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 3455555554 57888888755 4569999999999965532 138999999999999985 687 567899
Q ss_pred HHHHHHHHhhcCC
Q 030296 133 KVLLAVRSMFTNP 145 (179)
Q Consensus 133 ~il~~i~~ll~~p 145 (179)
.++..|.+.|.++
T Consensus 126 ~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 126 GLIQELIAAFSED 138 (365)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988764
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.64 E-value=0.038 Score=39.97 Aligned_cols=90 Identities=16% Similarity=0.299 Sum_probs=60.5
Q ss_pred CCeEEeecCCCccceEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCCcE--eccC------
Q 030296 51 QDCSAGPKGDNLYNWVATIIG--PAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV--NLDI------ 120 (179)
Q Consensus 51 ~~~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i--Cl~~------ 120 (179)
.|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|-+.+..|-.... .+|.| |-+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 46666655555556654 544 56677999999999999999999999887776632111 11222 2211
Q ss_pred --------CCCCCCCcC-CHHHHHHHHHHhhc
Q 030296 121 --------LKDSWSPAL-TITKVLLAVRSMFT 143 (179)
Q Consensus 121 --------l~~~W~p~~-~i~~il~~i~~ll~ 143 (179)
....|.|.. +|.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 125688876 69999988887663
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.54 E-value=0.0064 Score=42.39 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEe--CCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc
Q 030296 36 KRIQREMAELNMDPPQDCSAGPKGDNLYNWVATII--GPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI 105 (179)
Q Consensus 36 ~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~--Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 105 (179)
.+...|+..|+.--+..+ ......+...+.+.+. ....+.-....+.+.|.||++||..+|.|.+..+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456778887776433333 2223344455666662 12334445568999999999999999999877654
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.14 E-value=0.008 Score=45.65 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=50.3
Q ss_pred EEEEEcCCCCCCCCCeeeeccccc---cccccCC-----CcEeccCCC-CCCCCcCCHHHHHHHHHHhhcC
Q 030296 83 FLDITFPTDYPFKPPKVAFLTRIY---HCNVDSA-----GNVNLDILK-DSWSPALTITKVLLAVRSMFTN 144 (179)
Q Consensus 83 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnv~~~-----G~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~ 144 (179)
.+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+.--. ..|.+..+++.+|..|..-|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 367899999999999888777644 5888755 679986655 6799999999999999987753
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.92 E-value=0.044 Score=37.77 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 79 GGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 79 gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
.-.+.+.+.||++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 34588999999999999999987653
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=87.42 E-value=0.71 Score=38.33 Aligned_cols=88 Identities=20% Similarity=0.421 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
.....+|.+|+.++..+.. +.+ ..++++....+.+.. +...+.++|.+|.+||.++|.+...-|+
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i-~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~------ 162 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQI-QFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI------ 162 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEE-EE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS------
T ss_pred cHHHHHHHHHHHHhccccc--eEE-ecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc------
Confidence 3456778888888876443 222 135677788888872 2256889999999999999976533332
Q ss_pred CCCcEeccCCCCCCCC-cCCHHHHHHHHHHhh
Q 030296 112 SAGNVNLDILKDSWSP-ALTITKVLLAVRSMF 142 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p-~~~i~~il~~i~~ll 142 (179)
.+...|.+ ..++.+++...+..+
T Consensus 163 --------~~~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 163 --------PFSLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ---------HHHHHHCHT-SHHHHHHHHHHHH
T ss_pred --------chhhhhcccccCHHHHHHHHHHHH
Confidence 01135777 567877777666655
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.21 E-value=3.9 Score=38.23 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCC-CCCeeeeccc
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPF-KPPKVAFLTR 104 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~-~pP~v~f~t~ 104 (179)
..+-|.+|+.-|-. +...+.++...-.-....+++.||-..--.--..++.|.||.+||. .+|.++|..+
T Consensus 421 ~pQnLgeE~S~Ig~-k~~nV~fEkidva~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGV-KIRNVNFEKIDVADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhc-cccccceEeeccccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44556667665543 2234444433333345667777765433222335788999999999 7899999865
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=81.50 E-value=4.9 Score=31.81 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=18.5
Q ss_pred EEEEEEEcCCCCCCCCCeee
Q 030296 81 IFFLDITFPTDYPFKPPKVA 100 (179)
Q Consensus 81 ~f~~~i~fp~~YP~~pP~v~ 100 (179)
.+.+.+.++++||..+|.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 68899999999999999994
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=70.58 E-value=13 Score=31.53 Aligned_cols=60 Identities=23% Similarity=0.497 Sum_probs=42.4
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeeeec-cccccccccCCCcEeccCCCCCCCCcC--CHHHHHHHHHHh
Q 030296 76 PYQGGIFFLDITFPTDYPFKPPKVAFL-TRIYHCNVDSAGNVNLDILKDSWSPAL--TITKVLLAVRSM 141 (179)
Q Consensus 76 py~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnv~~~G~iCl~~l~~~W~p~~--~i~~il~~i~~l 141 (179)
||-|...+-+|.|...||..||-+.|. ..-|+|.... + ..| .+|.+.- .+..++..|..+
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~---l--~~L-~~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSK---L--PSL-VNWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhh---c--chh-hcCCCCCchHHHHHHHHHHHH
Confidence 588999999999999999999999997 3458884321 1 111 5798765 355555555543
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=61.57 E-value=13 Score=28.28 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=25.3
Q ss_pred ccccc---ccccCCCcEeccCCCCCCCCcC-CHHHHHHHHHHhhcCCCC
Q 030296 103 TRIYH---CNVDSAGNVNLDILKDSWSPAL-TITKVLLAVRSMFTNPSL 147 (179)
Q Consensus 103 t~i~H---Pnv~~~G~iCl~~l~~~W~p~~-~i~~il~~i~~ll~~p~~ 147 (179)
|+.|| +||+.+|.||+.... .|.. ++.++=..-..++.++..
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ft 135 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSPFT 135 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCCcc
Confidence 44555 589999999987643 3444 344444444456666643
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=52.53 E-value=20 Score=26.45 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=22.7
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeeecc
Q 030296 78 QGGIFFLDITFPTDYP-FKPPKVAFLT 103 (179)
Q Consensus 78 ~gg~f~~~i~fp~~YP-~~pP~v~f~t 103 (179)
+.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3588999999999999 9999998764
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.89 E-value=14 Score=21.48 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhcCC
Q 030296 33 ASGKRIQREMAELNMDP 49 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~ 49 (179)
.-.+||++|+++|....
T Consensus 19 eeNrRL~ke~~eLralk 35 (44)
T smart00340 19 EENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45799999999998644
No 42
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=50.01 E-value=15 Score=28.90 Aligned_cols=55 Identities=22% Similarity=0.475 Sum_probs=45.5
Q ss_pred CCCCeeeecccccccccc--CCCcEeccCCCCCC--CCcCCHHHHHHHHHHhhcCCCCC
Q 030296 94 FKPPKVAFLTRIYHCNVD--SAGNVNLDILKDSW--SPALTITKVLLAVRSMFTNPSLH 148 (179)
Q Consensus 94 ~~pP~v~f~t~i~HPnv~--~~G~iCl~~l~~~W--~p~~~i~~il~~i~~ll~~p~~~ 148 (179)
..||-|.|-.+.|.-.|+ +-|.|--++...+| -|...+.+-|..|..+|..|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 479999999999999998 67877767777777 47889999999999999887544
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=47.87 E-value=25 Score=27.26 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeecc
Q 030296 78 QGGIFFLDITFPTDYPFKPPKVAFLT 103 (179)
Q Consensus 78 ~gg~f~~~i~fp~~YP~~pP~v~f~t 103 (179)
+.|.|.|.=.+|--||.++|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998874
No 44
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=46.78 E-value=9.7 Score=25.19 Aligned_cols=23 Identities=43% Similarity=0.401 Sum_probs=14.8
Q ss_pred ccCCCCCcchHHHHHHHHHHHHh
Q 030296 23 SSWVSTTSVSASGKRIQREMAEL 45 (179)
Q Consensus 23 ~~~~~~~~~~~~~~RL~~E~~~l 45 (179)
+......+.-..+|||++||+-|
T Consensus 49 s~~t~~ss~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 49 SSDTGLSSVLSQLKRIQRDLRGL 71 (76)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHS
T ss_pred cCCCccHHHHHHHHHHHHhhCCC
Confidence 33333344557899999999876
No 45
>PRK05414 urocanate hydratase; Provisional
Probab=43.88 E-value=70 Score=28.88 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++..+|++.|.+.|++...+|.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 57778889999999999999988874
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=42.44 E-value=30 Score=29.35 Aligned_cols=25 Identities=20% Similarity=0.568 Sum_probs=21.1
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeecc
Q 030296 79 GGIFFLDITFPTDYPFKPPKVAFLT 103 (179)
Q Consensus 79 gg~f~~~i~fp~~YP~~pP~v~f~t 103 (179)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3357788889999999999999875
No 47
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=39.84 E-value=41 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeeecc
Q 030296 79 GGIFFLDITFPTDYP-----FKPPKVAFLT 103 (179)
Q Consensus 79 gg~f~~~i~fp~~YP-----~~pP~v~f~t 103 (179)
.|.|.|.-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 478999999999999 8999998764
No 48
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=39.21 E-value=99 Score=27.87 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++..+|+++|.+.|++...+|.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47777888999999999999988874
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=38.70 E-value=1e+02 Score=20.56 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=27.9
Q ss_pred cceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccc
Q 030296 63 YNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY 106 (179)
Q Consensus 63 ~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 106 (179)
..|.+-+.|+.+.--..-+=++.+.+.+.|+. |...+..|-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999877764444556788888898875 7766666644
No 50
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=33.21 E-value=1.3e+02 Score=27.00 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++-.+|+++|.+.|+....+|.
T Consensus 282 ee~~~lr~~d~~~~~~~a~~sm~~hv 307 (561)
T COG2987 282 EEADELREEDPDKYRKLARASMARHV 307 (561)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 47888888999999999999988773
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.58 E-value=58 Score=27.37 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEEEEcCCCCCCCCCeeeeccc
Q 030296 81 IFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 81 ~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
.+.+.+..++.||..-|+|+...|
T Consensus 46 cvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 46 CVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEecCCCCCCcCCceEecCC
Confidence 577889999999999999998877
No 52
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=31.53 E-value=1.3e+02 Score=23.92 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCC---------------------
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDY--------------------- 92 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~Y--------------------- 92 (179)
...||.+.++++++.. .+...-|.+.+. |...---|| |.|.++|.++=
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccCCc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 3466776666665411 233344777777 333221244 77777775433
Q ss_pred -CCCCCeeeecc--ccccccccCCC
Q 030296 93 -PFKPPKVAFLT--RIYHCNVDSAG 114 (179)
Q Consensus 93 -P~~pP~v~f~t--~i~HPnv~~~G 114 (179)
...-|.+.|.| ++.|-..++++
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~~ 103 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPSN 103 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCCc
Confidence 22347888887 36776665433
No 53
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=30.75 E-value=1e+02 Score=20.60 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.0
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHH
Q 030296 154 GIAHLYLEDKAKHDQLAAEWTLR 176 (179)
Q Consensus 154 ~a~~~~~~d~~~f~~~ar~~~~~ 176 (179)
+...++++||++|++..++..+.
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Confidence 56778999999999988877654
No 54
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=30.05 E-value=48 Score=30.22 Aligned_cols=29 Identities=34% Similarity=0.784 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeeeeccc
Q 030296 75 TPYQGGIFFLDITFPTDYPF---KPPKVAFLTR 104 (179)
Q Consensus 75 tpy~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 104 (179)
+||.=|.|.+ +.+|+.||+ +-|-++|+||
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4777788885 567999998 8899999998
No 55
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=29.63 E-value=75 Score=26.13 Aligned_cols=30 Identities=17% Similarity=-0.045 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 149 NPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 149 ~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.-.+.+|+..|.+|++.|.+.+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 347889999999999999999999998765
No 56
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=28.67 E-value=99 Score=24.84 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=21.2
Q ss_pred ccccCCCcEeccCCCCCCCCcC-CHHHHHHHHHHhhc
Q 030296 108 CNVDSAGNVNLDILKDSWSPAL-TITKVLLAVRSMFT 143 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~~~W~p~~-~i~~il~~i~~ll~ 143 (179)
+||+.+|.||+.... .|.. ++.+ +......|-
T Consensus 139 fNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 139 FNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred CccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHh
Confidence 488899999986653 4544 5666 555555443
No 57
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=28.12 E-value=1.3e+02 Score=19.81 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 149 NPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 149 ~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
+|-|.+|-..|.+-.++..+..+++.++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 578999999998888888888888888774
No 58
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=27.40 E-value=80 Score=24.60 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=20.8
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeec
Q 030296 78 QGGIFFLDITFPTDYPF-----KPPKVAFL 102 (179)
Q Consensus 78 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 102 (179)
+.|.|.|.-..|--||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34779999999999998 88888765
No 59
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=27.27 E-value=99 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++..+|++.|.+.|++...+|.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 56667778999999999999988873
No 60
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=25.57 E-value=92 Score=24.09 Aligned_cols=24 Identities=21% Similarity=0.366 Sum_probs=19.6
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeeec
Q 030296 79 GGIFFLDITFPTDYPF-----KPPKVAFL 102 (179)
Q Consensus 79 gg~f~~~i~fp~~YP~-----~pP~v~f~ 102 (179)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3779999999999995 77777654
No 61
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=24.98 E-value=1.6e+02 Score=26.09 Aligned_cols=14 Identities=36% Similarity=0.524 Sum_probs=11.9
Q ss_pred EEEEEEEcCCCCCC
Q 030296 81 IFFLDITFPTDYPF 94 (179)
Q Consensus 81 ~f~~~i~fp~~YP~ 94 (179)
...+.++||.+|+.
T Consensus 210 ~k~i~vtFP~dy~a 223 (441)
T COG0544 210 EKDIKVTFPEDYHA 223 (441)
T ss_pred eeEEEEEcccccch
Confidence 46688999999987
No 62
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.78 E-value=1.1e+02 Score=23.70 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKV 99 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 99 (179)
.-...+|+++|++.+.+.-...++..|.-+....+.+.+..-.+ ...|.++-.+-|.+
T Consensus 117 ~~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD-----------~~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 117 RVKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD-----------TEVPEKWDESGPKL 174 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC-----------ccCCcchhcCCCeE
Confidence 34568999999999998877888887877777777777764332 34555555555543
No 63
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=24.54 E-value=80 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.4
Q ss_pred cCCCccceEEEEeCCCCCCCC
Q 030296 58 KGDNLYNWVATIIGPAGTPYQ 78 (179)
Q Consensus 58 ~~~~~~~w~~~i~Gp~~tpy~ 78 (179)
.+.|...|.|++.|+++++..
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~ 63 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRK 63 (139)
T ss_pred cCCCCcceEEEEECCCCccee
Confidence 467888899999999988764
No 64
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=24.50 E-value=2e+02 Score=18.37 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 137 AVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 137 ~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|..++..-++..-+.++|...+.+=-+.|...+-.-+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555668999999888888888887777766665
No 65
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=23.12 E-value=1.3e+02 Score=18.62 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHCHHHHHHHHH
Q 030296 151 IVPGIAHLYLEDKAKHDQLAA 171 (179)
Q Consensus 151 ~n~~a~~~~~~d~~~f~~~ar 171 (179)
-|++.+++..+|+++|.+...
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHCHHHHHHHHc
Confidence 588999999999999988654
No 66
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.08 E-value=78 Score=19.74 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=12.1
Q ss_pred CCCCCcCCHHHHHHHHHHh
Q 030296 123 DSWSPALTITKVLLAVRSM 141 (179)
Q Consensus 123 ~~W~p~~~i~~il~~i~~l 141 (179)
-+|.|.++|++++......
T Consensus 36 LgW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp C----SSSHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHH
Confidence 4899999999999876653
No 67
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=22.20 E-value=2.1e+02 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.9
Q ss_pred EcCCCCCCCCCeeeeccccccccccCCCcE
Q 030296 87 TFPTDYPFKPPKVAFLTRIYHCNVDSAGNV 116 (179)
Q Consensus 87 ~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i 116 (179)
.|...|++.||-+++...|.|--+.++-++
T Consensus 303 ~fr~~~~~t~PyltaeP~i~~HrL~p~DkF 332 (390)
T KOG0700|consen 303 KFRIPYIGTPPYLTAEPSITHHKLTPNDKF 332 (390)
T ss_pred hcCCCCCCCCCceeccceEEEEEcCCCCeE
Confidence 688899999999999999988777765543
No 68
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=22.08 E-value=2.9e+02 Score=21.61 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCeEEeecCCCcc-ceEEEEeCCCCCCCCCCEEEEEE
Q 030296 30 SVSASGKRIQREMAELNMDPPQDCSAGPKGDNLY-NWVATIIGPAGTPYQGGIFFLDI 86 (179)
Q Consensus 30 ~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~-~w~~~i~Gp~~tpy~gg~f~~~i 86 (179)
.-..++..|.+++.. ...|+|+...+...... .|...-. -...-|+|.-|.+.+
T Consensus 137 ~y~~~i~~l~~~m~~--g~~P~gf~~~~~~~~~~~~~~~l~~-~~~~~~~G~~l~~~~ 191 (234)
T PF06586_consen 137 PYEETIVSLMRAMAN--GKVPDGFSVRPVDSEPPPLPKGLRL-TPVQRYEGSGLRGEV 191 (234)
T ss_pred CHHHHHHHHHHHHHc--CCCCCCcEEecccCCcccccccceE-eeeeEEecCceEEEE
Confidence 334555666665544 45578999877665544 4433222 344567776655443
No 69
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=21.91 E-value=1.9e+02 Score=24.40 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred CccceEEEEeCCCCCCCCCCEEEEEEEcC-----CCCCCCCCeeeeccccccccccCC
Q 030296 61 NLYNWVATIIGPAGTPYQGGIFFLDITFP-----TDYPFKPPKVAFLTRIYHCNVDSA 113 (179)
Q Consensus 61 ~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp-----~~YP~~pP~v~f~t~i~HPnv~~~ 113 (179)
++..-...+-|.+..-=+|...-+++.|= +.=+..-|+|.|.-.+|||||-.-
T Consensus 269 ~p~~~~l~Vg~E~q~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 269 SPSGCELVVGGEPQCWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred CCCCceEEEcCccccccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 34444445555444434455555555553 333557899999999999999743
No 70
>PRK11700 hypothetical protein; Provisional
Probab=21.86 E-value=2.9e+02 Score=21.47 Aligned_cols=70 Identities=14% Similarity=0.329 Sum_probs=42.1
Q ss_pred CccceEEEEe-----CCCCCCCCCCEEEEEEEcCC--------------CCCCCCCeeeecc--c------ccccccc-C
Q 030296 61 NLYNWVATII-----GPAGTPYQGGIFFLDITFPT--------------DYPFKPPKVAFLT--R------IYHCNVD-S 112 (179)
Q Consensus 61 ~~~~w~~~i~-----Gp~~tpy~gg~f~~~i~fp~--------------~YP~~pP~v~f~t--~------i~HPnv~-~ 112 (179)
....|.+.+. |.+.-|. -|.=++++++|- +.|..+|-|++.. | .-+|-|- +
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~-eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~ 165 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPH-EGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVT 165 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCC-CCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEe
Confidence 3445655442 2333333 356788888773 3455566655543 3 4567675 7
Q ss_pred CCcEeccCCCCCCCCcCCHHHHHHH
Q 030296 113 AGNVNLDILKDSWSPALTITKVLLA 137 (179)
Q Consensus 113 ~G~iCl~~l~~~W~p~~~i~~il~~ 137 (179)
+|.+|+.... ++|..|+.+
T Consensus 166 ~~~vcIK~HP------~slk~IV~S 184 (187)
T PRK11700 166 DGGICIKFHP------HSIKEIVAS 184 (187)
T ss_pred eCCEEEEEcC------ccHHHHHHh
Confidence 8999997753 677777654
No 71
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=21.63 E-value=1.7e+02 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=25.2
Q ss_pred EEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 030296 67 ATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL 102 (179)
Q Consensus 67 ~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 102 (179)
+.+.|..++-| ||.++..+.- .+||...=.+.+-
T Consensus 169 G~m~~~gd~AY-Gg~~Ea~lr~-kDyPi~~~~~tlg 202 (273)
T PF11886_consen 169 GAMRGQGDVAY-GGNLEATLRG-KDYPIGQDQSTLG 202 (273)
T ss_pred cEeeecCceee-ceeEEEEeec-CCCCCCCcceeee
Confidence 34566777888 8888888877 6799987776543
No 72
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=21.25 E-value=2.3e+02 Score=23.17 Aligned_cols=46 Identities=20% Similarity=0.422 Sum_probs=30.9
Q ss_pred CCccceEEEEeCCCCCCCCCCE----EEEEEEc-----CCCCCCCCCeeeeccccc
Q 030296 60 DNLYNWVATIIGPAGTPYQGGI----FFLDITF-----PTDYPFKPPKVAFLTRIY 106 (179)
Q Consensus 60 ~~~~~w~~~i~Gp~~tpy~gg~----f~~~i~f-----p~~YP~~pP~v~f~t~i~ 106 (179)
.|+.-|.+.... .+|.-..|+ |+.++++ .-|-||+||+|..+++-|
T Consensus 100 KDp~PWkl~YrV-~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRV-EDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEe-ecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 455668877774 444333333 5566665 468899999999999855
No 73
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=50 Score=25.78 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhh
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMF 142 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll 142 (179)
-.+.+|++++..-|+|.+|++.-+.-++.++
T Consensus 134 y~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv 164 (200)
T KOG0177|consen 134 YGSYFCLSILDRYYKPDMTIEEALDLMKKCV 164 (200)
T ss_pred chhhhhHHHHHhhhCCCCCHHHHHHHHHHHH
Confidence 3557899999999999999877666555443
No 74
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=20.27 E-value=2.1e+02 Score=19.41 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=20.0
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 77 YQGGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 77 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45666788888889999 588888765
Done!