Query 030296
Match_columns 179
No_of_seqs 155 out of 1142
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:44:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 4.8E-53 1.6E-57 316.8 19.6 149 31-179 2-150 (151)
2 1zdn_A Ubiquitin-conjugating e 100.0 1.4E-52 4.8E-57 316.4 17.5 147 32-178 12-158 (158)
3 2c4o_A Ubiquitin-conjugating e 100.0 6.6E-52 2.3E-56 314.5 19.7 148 32-179 18-165 (165)
4 1z2u_A Ubiquitin-conjugating e 100.0 5.1E-52 1.7E-56 310.9 18.7 148 32-179 3-150 (150)
5 2ayv_A Ubiquitin-conjugating e 100.0 5.4E-52 1.8E-56 315.3 18.9 147 32-178 20-166 (166)
6 2r0j_A Ubiquitin carrier prote 100.0 9E-52 3.1E-56 309.2 17.7 145 35-179 3-147 (149)
7 3bzh_A Ubiquitin-conjugating e 100.0 1.5E-51 5E-56 319.7 18.8 149 31-179 46-194 (194)
8 1yh2_A HSPC150 protein similar 100.0 2.6E-51 8.7E-56 312.6 19.7 148 32-179 3-154 (169)
9 2c2v_B Ubiquitin-conjugating e 100.0 6.1E-52 2.1E-56 311.7 16.0 146 34-179 6-151 (154)
10 2aak_A UBC1, ubiquitin conjuga 100.0 2.6E-51 9E-56 307.6 19.0 147 33-179 4-150 (152)
11 1ayz_A UBC2, ubiquitin-conjuga 100.0 1.7E-51 5.8E-56 313.3 18.1 147 33-179 4-150 (169)
12 1fxt_A Ubiquitin-conjugating e 100.0 5.1E-52 1.7E-56 310.6 14.2 146 34-179 2-149 (149)
13 1jat_A Ubiquitin-conjugating e 100.0 5.2E-52 1.8E-56 312.4 14.0 146 34-179 6-151 (155)
14 2e2c_A Ubiquitin conjugating e 100.0 2.7E-51 9.4E-56 308.7 17.7 147 32-179 8-154 (156)
15 2bep_A Ubiquitin-conjugating e 100.0 6.5E-51 2.2E-55 307.6 18.8 147 33-179 8-158 (159)
16 2f4z_A Tgtwinscan_2721 - E2 do 100.0 4.3E-51 1.5E-55 316.7 17.6 149 31-179 30-192 (193)
17 3h8k_A Ubiquitin-conjugating e 100.0 1.4E-50 4.7E-55 307.2 19.3 147 33-179 3-163 (164)
18 3rcz_B SUMO-conjugating enzyme 100.0 1.1E-50 3.7E-55 307.2 18.1 149 31-179 8-163 (163)
19 3fn1_B NEDD8-conjugating enzym 100.0 1.6E-50 5.6E-55 307.6 18.2 156 23-179 4-167 (167)
20 2ucz_A UBC7, ubiquitin conjuga 100.0 3.1E-50 1.1E-54 305.5 18.2 147 33-179 4-164 (165)
21 2pwq_A Ubiquitin conjugating e 100.0 1.2E-50 4.2E-55 318.9 16.5 149 31-179 21-170 (216)
22 2gjd_A Ubiquitin-conjugating e 100.0 3.1E-50 1.1E-54 303.2 18.0 147 33-179 4-157 (157)
23 1i7k_A Ubiquitin-conjugating e 100.0 1.5E-50 5.3E-55 310.3 15.1 147 32-179 29-175 (179)
24 2grr_A Ubiquitin-conjugating e 100.0 7.1E-50 2.4E-54 302.4 17.3 147 33-179 7-160 (161)
25 1wzv_A Ubiquitin-conjugating e 100.0 5.8E-50 2E-54 301.2 16.4 146 33-179 4-151 (155)
26 3k9o_A Ubiquitin-conjugating e 100.0 1.4E-49 4.7E-54 310.7 18.2 147 33-179 5-155 (201)
27 3e46_A Ubiquitin-conjugating e 100.0 3.3E-49 1.1E-53 317.0 18.9 147 33-179 57-207 (253)
28 3rz3_A Ubiquitin-conjugating e 100.0 5.7E-49 1.9E-53 303.0 18.1 150 29-178 3-172 (183)
29 1tte_A Ubiquitin-conjugating e 100.0 9.2E-50 3.2E-54 313.7 12.9 146 34-179 3-150 (215)
30 2awf_A Ubiquitin-conjugating e 100.0 9E-49 3.1E-53 299.1 13.7 147 27-173 11-172 (172)
31 2onu_A Ubiquitin-conjugating e 100.0 2.2E-49 7.7E-54 297.0 10.1 143 34-179 3-147 (152)
32 1yrv_A Ubiquitin-conjugating l 100.0 1.7E-48 5.9E-53 296.7 14.4 143 33-176 23-168 (169)
33 2z5d_A Ubiquitin-conjugating e 100.0 7.6E-49 2.6E-53 300.7 12.3 143 33-179 25-169 (179)
34 2y9m_A Ubiquitin-conjugating e 100.0 9.5E-48 3.2E-52 293.5 17.5 147 33-179 6-168 (172)
35 1c4z_D UBCH7, ubiquitin conjug 100.0 7E-49 2.4E-53 295.0 10.8 145 34-179 3-149 (154)
36 1y8x_A Ubiquitin-conjugating e 100.0 1.2E-47 4.1E-52 289.8 17.2 142 31-175 4-146 (160)
37 2nvu_C NEDD8-conjugating enzym 100.0 2.1E-47 7E-52 293.4 18.0 145 29-176 22-167 (180)
38 1yf9_A Ubiquitin carrier prote 100.0 1.8E-47 6.2E-52 291.5 12.6 143 33-179 12-156 (171)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.4E-46 4.8E-51 320.2 18.6 148 32-179 2-149 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 2.6E-46 8.7E-51 289.6 16.9 148 27-177 23-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 1.6E-44 5.4E-49 274.6 10.6 139 34-172 9-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 1.3E-42 4.5E-47 286.2 15.3 151 29-179 72-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 7.6E-43 2.6E-47 262.3 10.0 133 29-162 17-156 (156)
44 2fo3_A Ubiquitin-conjugating e 100.0 7E-42 2.4E-46 248.6 13.1 119 30-148 3-122 (125)
45 2h2y_A Ubiquitin-conjugating e 100.0 2.8E-41 9.5E-46 248.7 16.0 119 29-147 16-135 (136)
46 2a4d_A Ubiquitin-conjugating e 100.0 1.5E-41 5.1E-46 255.9 13.3 127 30-156 22-156 (160)
47 1jat_B Ubiquitin-conjugating e 100.0 3E-42 1E-46 254.5 6.0 128 31-159 4-138 (138)
48 2hlw_A Ubiquitin-conjugating e 100.0 7.6E-41 2.6E-45 254.6 11.2 126 31-156 33-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 3.7E-40 1.3E-44 242.4 11.3 113 31-143 20-136 (136)
50 2f4w_A Ubiquitin-conjugating e 100.0 5.8E-39 2E-43 247.7 14.9 121 28-150 9-132 (187)
51 1zuo_A Hypothetical protein LO 100.0 4.7E-39 1.6E-43 248.0 4.9 138 32-177 26-180 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 5E-28 1.7E-32 180.4 4.6 116 31-160 30-160 (172)
53 3r3q_A Suppressor protein STP2 99.8 5.4E-20 1.8E-24 138.0 9.3 113 36-149 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.8 6.2E-20 2.1E-24 133.9 2.4 90 31-129 32-132 (168)
55 3obq_A Tumor susceptibility ge 99.5 1.4E-14 4.8E-19 106.8 5.7 80 59-144 50-138 (146)
56 2ebm_A RWD domain-containing p 97.0 0.0053 1.8E-07 43.3 9.4 68 34-103 11-78 (128)
57 2daw_A RWD domain containing p 96.6 0.037 1.3E-06 40.4 11.0 67 33-103 14-98 (154)
58 2yz0_A Serine/threonine-protei 96.6 0.029 1E-06 39.9 10.2 72 31-103 8-85 (138)
59 2day_A Ring finger protein 25; 96.0 0.016 5.5E-07 40.7 6.3 68 37-104 12-83 (128)
60 2ebk_A RWD domain-containing p 95.2 0.087 3E-06 36.9 7.6 64 38-102 12-78 (128)
61 3zqs_A E3 ubiquitin-protein li 95.1 0.3 1E-05 36.8 10.4 83 37-143 5-87 (186)
62 1ukx_A GCN2, GCN2 EIF2alpha ki 94.8 0.17 6E-06 35.6 8.2 69 33-102 10-85 (137)
63 2dax_A Protein C21ORF6; RWD do 94.4 0.36 1.2E-05 34.8 9.2 24 81-104 74-97 (152)
64 2cwb_A Chimera of immunoglobul 90.5 0.049 1.7E-06 37.6 0.0 34 145-178 21-54 (108)
65 3u3c_B Paxillin LD2 peptide; 4 69.2 5.4 0.00019 19.3 2.7 22 32-53 4-25 (26)
66 2fkn_A Urocanate hydratase; ro 38.1 68 0.0023 27.7 6.1 26 153-178 278-303 (552)
67 1x87_A Urocanase protein; stru 37.6 70 0.0024 27.6 6.1 26 153-178 277-302 (551)
68 1uwk_A Urocanate hydratase; hy 36.8 73 0.0025 27.6 6.1 26 153-178 282-307 (557)
69 3rls_A YAF9, protein AF-9 homo 31.0 1.1E+02 0.0037 22.5 5.6 43 60-104 30-72 (175)
70 2bum_A Protocatechuate 3,4-dio 27.2 52 0.0018 24.8 3.4 26 78-103 109-139 (209)
71 2rf4_B DNA-directed RNA polyme 26.2 35 0.0012 22.1 1.9 15 31-45 60-74 (87)
72 3zqs_A E3 ubiquitin-protein li 26.2 64 0.0022 24.0 3.6 51 82-139 126-180 (186)
73 2f4m_B UV excision repair prot 24.3 76 0.0026 19.1 3.1 20 151-170 37-56 (61)
74 2cu9_A Spcia1, histone chapero 22.0 1.2E+02 0.004 22.0 4.3 38 61-98 36-86 (161)
75 1pve_A HHR23B, UV excision rep 21.6 77 0.0026 19.7 2.8 21 151-171 39-59 (72)
76 2j3t_C Trafficking protein par 20.9 75 0.0026 22.3 3.0 39 129-177 91-137 (145)
77 3qrl_A Transcription initiatio 20.8 2.3E+02 0.0077 20.0 5.6 43 62-106 32-77 (140)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=4.8e-53 Score=316.78 Aligned_cols=149 Identities=48% Similarity=1.019 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV 110 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 110 (179)
.+.+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 111 DSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 111 ~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|+++||+||++||+
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 2
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-52 Score=316.35 Aligned_cols=147 Identities=31% Similarity=0.567 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 91 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+||++||
T Consensus 92 ~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 92 ANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 3
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=6.6e-52 Score=314.54 Aligned_cols=148 Identities=56% Similarity=1.089 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
+.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|.++|.||++||++||+|+|.|+||||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 4
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=5.1e-52 Score=310.88 Aligned_cols=148 Identities=57% Similarity=1.095 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 83 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 5
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-52 Score=315.25 Aligned_cols=147 Identities=56% Similarity=1.120 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
..+.+||++|+++|+++++.|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++||
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 6
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=9e-52 Score=309.21 Aligned_cols=145 Identities=40% Similarity=0.798 Sum_probs=142.7
Q ss_pred HHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCC
Q 030296 35 GKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAG 114 (179)
Q Consensus 35 ~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G 114 (179)
.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 115 NVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 115 ~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 147 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYAN 147 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred EEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999996
No 7
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.5e-51 Score=319.68 Aligned_cols=149 Identities=58% Similarity=1.138 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV 110 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 110 (179)
++.+.+||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||
T Consensus 46 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV 125 (194)
T 3bzh_A 46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI 125 (194)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred ccHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 111 DSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 111 ~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 126 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 126 NSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 8
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-51 Score=312.55 Aligned_cols=148 Identities=35% Similarity=0.711 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~ 82 (169)
T 1yh2_A 3 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID 82 (169)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCC----CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILK----DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~----~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|. ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 83 ~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 154 (169)
T 1yh2_A 83 SAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 154 (169)
T ss_dssp TTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred cCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 99999999998 899999999999999999999999999999999999999999999999999999995
No 9
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-52 Score=311.65 Aligned_cols=146 Identities=37% Similarity=0.706 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA 113 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 113 (179)
+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 6 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 85 (154)
T 2c2v_B 6 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL 85 (154)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 114 GNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 114 G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 86 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~ 151 (154)
T 2c2v_B 86 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 151 (154)
T ss_dssp CBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999995
No 10
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=2.6e-51 Score=307.65 Aligned_cols=147 Identities=33% Similarity=0.694 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 4 ~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (152)
T 2aak_A 4 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA 83 (152)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 ~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 84 DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 11
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-51 Score=313.35 Aligned_cols=147 Identities=34% Similarity=0.656 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||+.
T Consensus 4 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~ 83 (169)
T 1ayz_A 4 PARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA 83 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 ~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 84 ~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 84 NGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp TSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 12
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=5.1e-52 Score=310.58 Aligned_cols=146 Identities=37% Similarity=0.764 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCC-CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
+.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999999999999999887 9999999999999999999999999999999999999999999999999997
Q ss_pred -CCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 -AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 -~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999996
No 13
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=5.2e-52 Score=312.39 Aligned_cols=146 Identities=41% Similarity=0.764 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSA 113 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~ 113 (179)
+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 6 ~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 85 (155)
T 1jat_A 6 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 85 (155)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 114 GNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 114 G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 86 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 86 GRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp CCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred CEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999995
No 14
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-51 Score=308.73 Aligned_cols=147 Identities=35% Similarity=0.655 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
..+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|+++||+|+++||.
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 88 QSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred cCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999 8999999999999999983
No 15
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=6.5e-51 Score=307.56 Aligned_cols=147 Identities=33% Similarity=0.637 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhhcC---CCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccc
Q 030296 33 ASGKRIQREMAELNMD---PPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCN 109 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 109 (179)
.+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 8 ~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 87 (159)
T 2bep_A 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 87 (159)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccC
Confidence 5789999999999985 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 110 VD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 110 v~-~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 88 i~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 88 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp BCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999995
No 16
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-51 Score=316.70 Aligned_cols=149 Identities=40% Similarity=0.744 Sum_probs=140.8
Q ss_pred chHHHHHHHHHHHHhhcCCC-------------CCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCC
Q 030296 31 VSASGKRIQREMAELNMDPP-------------QDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPP 97 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~-------------~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP 97 (179)
...+.+||++|+++|+++++ .|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 34578999999999999886 79999999999999999999999999999999999999999999999
Q ss_pred eeeecccccccccc-CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 030296 98 KVAFLTRIYHCNVD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 176 (179)
Q Consensus 98 ~v~f~t~i~HPnv~-~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 176 (179)
+|+|.|+||||||+ .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++
T Consensus 110 ~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ 189 (193)
T 2f4z_A 110 KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 189 (193)
T ss_dssp EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC
Q 030296 177 FAK 179 (179)
Q Consensus 177 ~a~ 179 (179)
||+
T Consensus 190 ya~ 192 (193)
T 2f4z_A 190 FAK 192 (193)
T ss_dssp HCC
T ss_pred Hcc
Confidence 995
No 17
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.4e-50 Score=307.25 Aligned_cols=147 Identities=31% Similarity=0.637 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCC-CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGD-NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
.+.+||++|+++++++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~ 82 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82 (164)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCC
Confidence 5789999999999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 112 SAGNVNLDILK-------------DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 112 ~~G~iCl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.+|.||+++|. ++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++++
T Consensus 83 ~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s~ 162 (164)
T 3h8k_A 83 PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSL 162 (164)
T ss_dssp TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 99999999997 78999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 030296 179 K 179 (179)
Q Consensus 179 ~ 179 (179)
.
T Consensus 163 ~ 163 (164)
T 3h8k_A 163 G 163 (164)
T ss_dssp T
T ss_pred c
Confidence 4
No 18
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-50 Score=307.21 Aligned_cols=149 Identities=30% Similarity=0.590 Sum_probs=143.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCC-----CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGD-----NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI 105 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 105 (179)
+..+.+||++|+++|+++++.|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 346899999999999999999999998865 899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEeccCCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 106 YHCNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 106 ~HPnv~~~G~iCl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|||||+.+|.||+++|.. +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++||.
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999999999999999985 59999999999999999999999999999999999999999999999999999984
No 19
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.6e-50 Score=307.62 Aligned_cols=156 Identities=30% Similarity=0.542 Sum_probs=145.1
Q ss_pred ccCCCCCcchHHHHHHHHHHHHhhcCCCCCeEEee-cCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeee
Q 030296 23 SSWVSTTSVSASGKRIQREMAELNMDPPQDCSAGP-KGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAF 101 (179)
Q Consensus 23 ~~~~~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f 101 (179)
+...++...+.+.+||++|+++|+++++.|+++.+ +++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|
T Consensus 4 ~~~~~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f 82 (167)
T 3fn1_B 4 TASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKC 82 (167)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEE
T ss_pred ccCCCccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEe
Confidence 33455667788999999999999999999999985 468899999998 8999999999999999999999999999999
Q ss_pred ccccccccccCCCcEeccCCCC------CCCCcCCHHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 030296 102 LTRIYHCNVDSAGNVNLDILKD------SWSPALTITKVLLAVRSMFTN-PSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 174 (179)
Q Consensus 102 ~t~i~HPnv~~~G~iCl~~l~~------~W~p~~~i~~il~~i~~ll~~-p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~ 174 (179)
.|++|||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+ |++++|+|.+||++|++|+++|+++||+|+
T Consensus 83 ~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~ 162 (167)
T 3fn1_B 83 LTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYI 162 (167)
T ss_dssp CSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHH
Confidence 9999999999999999999974 799999999999999999999 699999999999999999999999999999
Q ss_pred HHHcC
Q 030296 175 LRFAK 179 (179)
Q Consensus 175 ~~~a~ 179 (179)
++||+
T Consensus 163 ~~~A~ 167 (167)
T 3fn1_B 163 KRYAR 167 (167)
T ss_dssp HHHCC
T ss_pred HHhcC
Confidence 99996
No 20
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-50 Score=305.54 Aligned_cols=147 Identities=33% Similarity=0.661 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecC-CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKG-DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
.+.+||++|+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~ 83 (165)
T 2ucz_A 4 TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83 (165)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCC
Confidence 578999999999999999999999875 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCC-------------CCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 112 SAGNVNLDIL-------------KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 112 ~~G~iCl~~l-------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.+|.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++++
T Consensus 84 ~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~~~ 163 (165)
T 2ucz_A 84 PNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSL 163 (165)
T ss_dssp TTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred CCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence 9999999999 589999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 030296 179 K 179 (179)
Q Consensus 179 ~ 179 (179)
.
T Consensus 164 ~ 164 (165)
T 2ucz_A 164 G 164 (165)
T ss_dssp T
T ss_pred h
Confidence 4
No 21
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.2e-50 Score=318.92 Aligned_cols=149 Identities=40% Similarity=0.786 Sum_probs=144.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV 110 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 110 (179)
.+.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 111 D-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 111 ~-~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+ .+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~ 170 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT 170 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9 69999999999999999999999999999999999999999999999999999999999999999995
No 22
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=3.1e-50 Score=303.24 Aligned_cols=147 Identities=31% Similarity=0.579 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecC-----CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKG-----DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
.+.+||++|+++|+++++.|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 4 ~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 83 (157)
T 2gjd_A 4 LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYH 83 (157)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCcc
Confidence 578999999999999999999998864 489999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 108 CNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 84 Pnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 84 PNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999986 89999999999999999999999999999999999999999999999999999996
No 23
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-50 Score=310.33 Aligned_cols=147 Identities=37% Similarity=0.685 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
..+.+||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 108 (179)
T 1i7k_A 29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108 (179)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++.
T Consensus 109 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~ 175 (179)
T 1i7k_A 109 TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT 175 (179)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred cCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999 9999999999999999874
No 24
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=7.1e-50 Score=302.42 Aligned_cols=147 Identities=32% Similarity=0.627 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecC-----CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKG-----DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
.+.+||++|+++|+++++.|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 7 ~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 86 (161)
T 2grr_A 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH 86 (161)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCccc
Confidence 578999999999999999999998763 689999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCC--CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 108 CNVDSAGNVNLDILKD--SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+||++||+
T Consensus 87 Pnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 87 PNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999999999985 89999999999999999999999999999999999999999999999999999995
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=5.8e-50 Score=301.21 Aligned_cols=146 Identities=33% Similarity=0.663 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEE-eecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 33 ASGKRIQREMAELNMDPPQDCSA-GPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~-~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
.+.+||++|+++|+++++.|+.+ .++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 36799999999999999999999 788999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCcEeccCC-CCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDIL-KDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l-~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++| .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 7999999999999999999999999999999999999999999999999999999995
No 26
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.4e-49 Score=310.70 Aligned_cols=147 Identities=33% Similarity=0.635 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhhcCC---CCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccc
Q 030296 33 ASGKRIQREMAELNMDP---PQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCN 109 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 109 (179)
.+.+||++|+++|++++ +.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 84 (201)
T 3k9o_A 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84 (201)
T ss_dssp TTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCC
Confidence 36899999999999873 689999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 110 VD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 110 v~-~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 85 v~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 155 (201)
T 3k9o_A 85 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 155 (201)
T ss_dssp BCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999995
No 27
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=3.3e-49 Score=317.04 Aligned_cols=147 Identities=33% Similarity=0.637 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHhhcC---CCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccc
Q 030296 33 ASGKRIQREMAELNMD---PPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCN 109 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 109 (179)
.+.+||++|+++|+++ ++.|+++.+.++|+++|+++|.||++|||+||+|.++|.||++||++||+|+|.|+|||||
T Consensus 57 ~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 136 (253)
T 3e46_A 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 136 (253)
T ss_dssp HHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCC
Confidence 5899999999999987 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 110 VD-SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 110 v~-~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
|+ .+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 137 V~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~ 207 (253)
T 3e46_A 137 ISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 207 (253)
T ss_dssp BCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999995
No 28
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=5.7e-49 Score=303.05 Aligned_cols=150 Identities=29% Similarity=0.600 Sum_probs=142.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCeEEe-ecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 29 TSVSASGKRIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
|+++.+.+||++|+++|+++++.|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 4556789999999999999999999998 678899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH------CHHHHHH
Q 030296 108 CNVDSAGNVNLDILK-------------DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLE------DKAKHDQ 168 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~------d~~~f~~ 168 (179)
|||+.+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++ |+++|++
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~ 162 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTD 162 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHH
Confidence 999999999999997 889999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHHHHc
Q 030296 169 LAAEWTLRFA 178 (179)
Q Consensus 169 ~ar~~~~~~a 178 (179)
+||+++++++
T Consensus 163 ~v~~~v~~s~ 172 (183)
T 3rz3_A 163 IIRKQVLGTK 172 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 29
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=9.2e-50 Score=313.75 Aligned_cols=146 Identities=36% Similarity=0.760 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCC-ccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDN-LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~-~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
+.+||++|+++|++++++||++.+.++| +++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~ 82 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 82 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcC
Confidence 5799999999999999999999988764 669999999999999999999999999999999999999999999999998
Q ss_pred -CCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 -AGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 -~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 83 ~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~ 150 (215)
T 1tte_A 83 VTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 150 (215)
T ss_dssp SSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSC
T ss_pred CCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999995
No 30
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=9e-49 Score=299.14 Aligned_cols=147 Identities=37% Similarity=0.711 Sum_probs=112.1
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCCCCeEEeecC-CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc
Q 030296 27 STTSVSASGKRIQREMAELNMDPPQDCSAGPKG-DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI 105 (179)
Q Consensus 27 ~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 105 (179)
++.+...+.+||++|+++|+++++.||++.+.+ +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+|
T Consensus 11 ~~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i 90 (172)
T 2awf_A 11 SSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90 (172)
T ss_dssp --CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence 455666789999999999999999999999865 7999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcEeccCCC-------------CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHH-HHHHHHH
Q 030296 106 YHCNVDSAGNVNLDILK-------------DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKA-KHDQLAA 171 (179)
Q Consensus 106 ~HPnv~~~G~iCl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~-~f~~~ar 171 (179)
|||||+.+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|+++||
T Consensus 91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr 170 (172)
T 2awf_A 91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVA 170 (172)
T ss_dssp CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC---------------------------
T ss_pred ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHH
Confidence 99999999999999996 689999999999999999999999999999999999999999 9999999
Q ss_pred HH
Q 030296 172 EW 173 (179)
Q Consensus 172 ~~ 173 (179)
+|
T Consensus 171 ~~ 172 (172)
T 2awf_A 171 RC 172 (172)
T ss_dssp --
T ss_pred hC
Confidence 86
No 31
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=2.2e-49 Score=297.00 Aligned_cols=143 Identities=29% Similarity=0.592 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc-C
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD-S 112 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~-~ 112 (179)
+.+||++|++++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+ .
T Consensus 3 a~~Rl~kEl~~l~~---~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~ 79 (152)
T 2onu_A 3 SLTRKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA 79 (152)
T ss_dssp CCCHHHHTHHHHHH---HTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHhcCc---CCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence 45899999999987 4788999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CCcEeccCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 AGNVNLDILKDSWSPALTITKVLLA-VRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 ~G~iCl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 80 ~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~ 147 (152)
T 2onu_A 80 SGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147 (152)
T ss_dssp TCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 689999999999999999999999999999999999999995
No 32
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-48 Score=296.66 Aligned_cols=143 Identities=27% Similarity=0.539 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccc-c
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNV-D 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv-~ 111 (179)
.+.+||++|+++|+++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||| +
T Consensus 23 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~ 102 (169)
T 1yrv_A 23 RAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDP 102 (169)
T ss_dssp HHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCcEeccCCC--CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 030296 112 SAGNVNLDILK--DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 176 (179)
Q Consensus 112 ~~G~iCl~~l~--~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 176 (179)
.+|.||+++|. ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|+++|+++ |+++++
T Consensus 103 ~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 103 HTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 99999999998 89999999999999999999999999999999999999999999999 888864
No 33
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-49 Score=300.68 Aligned_cols=143 Identities=26% Similarity=0.617 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
.+.+||++|+++|++ +|+++.+. +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~ 100 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE 100 (179)
T ss_dssp HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence 578999999999985 57888887 67899999999999999999999999999999999999999999999999997
Q ss_pred -CCcEeccCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 -AGNVNLDILKDSWSPALTITKVLLA-VRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 -~G~iCl~~l~~~W~p~~~i~~il~~-i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|.++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 101 ~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp TTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred CCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999995
No 34
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=9.5e-48 Score=293.55 Aligned_cols=147 Identities=29% Similarity=0.551 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhhc-C-C------CC---CeEEee-cCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 030296 33 ASGKRIQREMAELNM-D-P------PQ---DCSAGP-KGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVA 100 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~ 100 (179)
.+.+||++|+++|++ + + +. ++.+.+ +++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+
T Consensus 6 ~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~ 85 (172)
T 2y9m_A 6 TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 85 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEE
Confidence 578999999999998 4 3 33 466777 7899999999999999999999999999999999999999999
Q ss_pred ecc-cccccccc-CCCcEeccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHH-CHHHHHHHHHHHHHH
Q 030296 101 FLT-RIYHCNVD-SAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLE-DKAKHDQLAAEWTLR 176 (179)
Q Consensus 101 f~t-~i~HPnv~-~~G~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~-d~~~f~~~ar~~~~~ 176 (179)
|.| +||||||+ .+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++ |+++|+++||+|+++
T Consensus 86 f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~~~~ 165 (172)
T 2y9m_A 86 FMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAE 165 (172)
T ss_dssp ECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred EeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999 99999996 89999999999 899999999999999999999999999999999999999 999999999999999
Q ss_pred HcC
Q 030296 177 FAK 179 (179)
Q Consensus 177 ~a~ 179 (179)
++.
T Consensus 166 ~~~ 168 (172)
T 2y9m_A 166 RER 168 (172)
T ss_dssp HHC
T ss_pred HHh
Confidence 863
No 35
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=7e-49 Score=295.02 Aligned_cols=145 Identities=31% Similarity=0.674 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEe-ecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccC
Q 030296 34 SGKRIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDS 112 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 112 (179)
+.+||++|+++|+++++.|+.+. +.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 56899999999999999999864 46789999999998 99999999999999999999999999999999999999999
Q ss_pred CCcEeccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 113 AGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 113 ~G~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC--
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 9999999997 899999999999999999999999999999999999999999999999999999985
No 36
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-47 Score=289.83 Aligned_cols=142 Identities=31% Similarity=0.585 Sum_probs=136.5
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEe-ecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCN 109 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 109 (179)
++.+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (160)
T 1y8x_A 4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 80 (160)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence 356889999999999 467899998 7889999999988 999999999999999999999999999999999999999
Q ss_pred ccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHH
Q 030296 110 VDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTL 175 (179)
Q Consensus 110 v~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~ 175 (179)
|+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|++
T Consensus 81 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~ 146 (160)
T 1y8x_A 81 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 146 (160)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999987
No 37
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.1e-47 Score=293.40 Aligned_cols=145 Identities=30% Similarity=0.575 Sum_probs=138.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCeEEe-ecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 29 TSVSASGKRIQREMAELNMDPPQDCSAG-PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
...+.+.+||++|+++| ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~H 98 (180)
T 2nvu_C 22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH 98 (180)
T ss_dssp CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCcc
Confidence 34557899999999999 467899998 7889999999998 9999999999999999999999999999999999999
Q ss_pred ccccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHH
Q 030296 108 CNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLR 176 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 176 (179)
|||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|++.
T Consensus 99 PNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 99 PNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp TTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred CCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999873
No 38
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.8e-47 Score=291.51 Aligned_cols=143 Identities=29% Similarity=0.584 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc-
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD- 111 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~- 111 (179)
.+.+||++|+++|++++. ++ +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 457999999999999873 43 3588999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHH-HHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAV-RSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i-~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred cCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 599999999999999999999999997 79999999999999999999999999999999999999995
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.4e-46 Score=320.23 Aligned_cols=148 Identities=55% Similarity=1.093 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccccccc
Q 030296 32 SASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVD 111 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 111 (179)
+.+.+||++|+++|++++++|+++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHcC
Q 030296 112 SAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFAK 179 (179)
Q Consensus 112 ~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 179 (179)
.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++||+
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~ 149 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTS
T ss_pred CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=2.6e-46 Score=289.56 Aligned_cols=148 Identities=26% Similarity=0.484 Sum_probs=140.3
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCCCCeEEe----ecCCCcc---ceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCee
Q 030296 27 STTSVSASGKRIQREMAELNMDPPQDCSAG----PKGDNLY---NWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKV 99 (179)
Q Consensus 27 ~~~~~~~~~~RL~~E~~~l~~~~~~~~~~~----~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v 99 (179)
++..++.+.+||++|+++|+ .++|+++. ++++|++ +|+++|. |++|||+||.|++.|.||++||++||+|
T Consensus 23 ~~~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v 99 (190)
T 3o2u_A 23 IQPNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKV 99 (190)
T ss_dssp SSCCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEE
T ss_pred CCCCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCcee
Confidence 45566788999999999998 67899998 8899999 9999997 7889999999999999999999999999
Q ss_pred eeccccccccccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030296 100 AFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 177 (179)
Q Consensus 100 ~f~t~i~HPnv~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 177 (179)
+|.|+||||||+.+|.||+++|.++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|+++||+|++..
T Consensus 100 ~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 100 VCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp EECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred EEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998643
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=1.6e-44 Score=274.58 Aligned_cols=139 Identities=24% Similarity=0.476 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhhcCC------------CCCeEEeecCCCccceEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCCCCee
Q 030296 34 SGKRIQREMAELNMDP------------PQDCSAGPKGDNLYNWVATIIGPAGTPYQ--GGIFFLDITFPTDYPFKPPKV 99 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~------------~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP~~pP~v 99 (179)
+.+||++|+++|++++ +.++.+.+.++|+++|+++|.||++|||+ ||.|++.|.||++||++||+|
T Consensus 9 a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v 88 (167)
T 4ds2_A 9 SNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEE
T ss_pred HHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEE
Confidence 5689999999999876 67899999999999999999999999999 999999999999999999999
Q ss_pred eeccccccccccCCCcEeccCCCCCCCCcCCHHHHHH-HHHHhhcC--CCCCCCCCHHHHHHHHHCHHHHHHHHHH
Q 030296 100 AFLTRIYHCNVDSAGNVNLDILKDSWSPALTITKVLL-AVRSMFTN--PSLHNPIVPGIAHLYLEDKAKHDQLAAE 172 (179)
Q Consensus 100 ~f~t~i~HPnv~~~G~iCl~~l~~~W~p~~~i~~il~-~i~~ll~~--p~~~~p~n~~a~~~~~~d~~~f~~~ar~ 172 (179)
+|.|++|||||+.+|.||+++|.++|+|+++++++|. .|++|+.+ |++++|+|.|||++|++|+++|+++||+
T Consensus 89 ~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 89 RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp EESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred EEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 9999999999999999999999999999999999754 56777765 8999999999999999999999999983
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=286.20 Aligned_cols=151 Identities=28% Similarity=0.457 Sum_probs=139.9
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCC----eEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 29 TSVSASGKRIQREMAELNMDPPQD----CSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~~~~~----~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
.....+.+||++|+++|+++++.| +.+.+.++|++.|+++|.||++|||+||+|.|+|.||++||++||+|+|.|+
T Consensus 72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~ 151 (323)
T 3ceg_A 72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT 151 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence 344578999999999999987764 4567889999999999999999999999999999999999999999999999
Q ss_pred -----cccccccCCCcEeccCCC-------CCCCCcC-CHHHHHHHHHHhhc--CCCCCCCCCHHH--HHHHHHCHHHHH
Q 030296 105 -----IYHCNVDSAGNVNLDILK-------DSWSPAL-TITKVLLAVRSMFT--NPSLHNPIVPGI--AHLYLEDKAKHD 167 (179)
Q Consensus 105 -----i~HPnv~~~G~iCl~~l~-------~~W~p~~-~i~~il~~i~~ll~--~p~~~~p~n~~a--~~~~~~d~~~f~ 167 (179)
+|||||+.+|.|||++|. ++|+|++ +|.+||.+|++||. +|++++|+|.++ +.+|.+|+++|+
T Consensus 152 ~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~ 231 (323)
T 3ceg_A 152 GGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYD 231 (323)
T ss_dssp TTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHH
T ss_pred CCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHH
Confidence 999999999999999997 6999999 89999999999996 677899999987 679999999999
Q ss_pred HHHHHHHHHHcC
Q 030296 168 QLAAEWTLRFAK 179 (179)
Q Consensus 168 ~~ar~~~~~~a~ 179 (179)
++||.|+.+||+
T Consensus 232 ~~vr~~t~k~A~ 243 (323)
T 3ceg_A 232 GNIRQATVKWAM 243 (323)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999999996
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=7.6e-43 Score=262.27 Aligned_cols=133 Identities=30% Similarity=0.506 Sum_probs=121.2
Q ss_pred CcchHHHHHHHHHHHHhhcC-CCCCeEEeecC-C--CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 29 TSVSASGKRIQREMAELNMD-PPQDCSAGPKG-D--NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
.....+.+||++|+++++++ ++.|+++.+.. + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 34456789999999999998 78899998853 3 59999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcE---eccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHC
Q 030296 105 IYHCNVDSAGNV---NLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLED 162 (179)
Q Consensus 105 i~HPnv~~~G~i---Cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d 162 (179)
||||||+.+|.| |+++|. +|+|+++|++||.+|+++|.+|++++|+|++||++|.+|
T Consensus 97 i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 97 IEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred cccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 999999999999 888886 599999999999999999999999999999999998765
No 44
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=7e-42 Score=248.58 Aligned_cols=119 Identities=32% Similarity=0.658 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc-ccc
Q 030296 30 SVSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI-YHC 108 (179)
Q Consensus 30 ~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP 108 (179)
+|+.+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus 3 ~m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 82 (125)
T 2fo3_A 3 NMGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHT 82 (125)
T ss_dssp ------CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCC
Confidence 4566789999999999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred cccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCCC
Q 030296 109 NVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSLH 148 (179)
Q Consensus 109 nv~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~ 148 (179)
||+.+|.||+++|.++|+|+++|++||.+|++||.+|+..
T Consensus 83 nv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~ 122 (125)
T 2fo3_A 83 HVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEK 122 (125)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC-----
T ss_pred cCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999999999999999999754
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.8e-41 Score=248.69 Aligned_cols=119 Identities=30% Similarity=0.645 Sum_probs=113.7
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc-cc
Q 030296 29 TSVSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI-YH 107 (179)
Q Consensus 29 ~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H 107 (179)
..++.+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||
T Consensus 16 ~~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H 95 (136)
T 2h2y_A 16 YNLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKH 95 (136)
T ss_dssp CCTTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCC
Confidence 35556889999999999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred ccccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhcCCCC
Q 030296 108 CNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFTNPSL 147 (179)
Q Consensus 108 Pnv~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~~p~~ 147 (179)
|||+.+|.||+++|.++|+|+++|++||.+|++||.+|+.
T Consensus 96 Pnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 96 THVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999999999999999999999999999999863
No 46
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.5e-41 Score=255.91 Aligned_cols=127 Identities=28% Similarity=0.445 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHHHHhhcCCCCC-eEEee-cCCC--ccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccc
Q 030296 30 SVSASGKRIQREMAELNMDPPQD-CSAGP-KGDN--LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRI 105 (179)
Q Consensus 30 ~~~~~~~RL~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i 105 (179)
....+.+||++|+++|++++++| +.+.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 22 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i 101 (160)
T 2a4d_A 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101 (160)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred eechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence 34678999999999999998888 77876 4555 89999999999999999999999999999999999999999999
Q ss_pred cccccc-CCCcEeccCCC--CCCCCcCCHHHHHHHHHHhhc-CCCCCCCCCHHHH
Q 030296 106 YHCNVD-SAGNVNLDILK--DSWSPALTITKVLLAVRSMFT-NPSLHNPIVPGIA 156 (179)
Q Consensus 106 ~HPnv~-~~G~iCl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~ 156 (179)
|||||+ .+|.||+++|. ++|+|+++|++||.+|+++|. +||+++|+|.|||
T Consensus 102 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 102 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp CCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred eeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 999999 79999999998 899999999999999999995 6899999999987
No 47
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=3e-42 Score=254.54 Aligned_cols=128 Identities=27% Similarity=0.527 Sum_probs=115.8
Q ss_pred chHHHHHHHHHHHHhhcC-CCCCeEEeecC-C--CccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccc
Q 030296 31 VSASGKRIQREMAELNMD-PPQDCSAGPKG-D--NLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY 106 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 106 (179)
...+.+||++|+++++++ ++.|+++.+.. + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 83 (138)
T 1jat_B 4 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83 (138)
T ss_dssp CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc
Confidence 346789999999999998 78899998853 3 4999999999999999999999999999999999999999999999
Q ss_pred cccccCC-CcE--eccCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 030296 107 HCNVDSA-GNV--NLDILKDSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLY 159 (179)
Q Consensus 107 HPnv~~~-G~i--Cl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~ 159 (179)
||||+.+ |.| |+++|. +|+|+++|++||.+|+++|.+|++++|+|++||++|
T Consensus 84 HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 84 LPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred cCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 9999975 999 898875 899999999999999999999999999999998654
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=7.6e-41 Score=254.57 Aligned_cols=126 Identities=28% Similarity=0.451 Sum_probs=117.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCC-eEEee-cCCC--ccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccc
Q 030296 31 VSASGKRIQREMAELNMDPPQD-CSAGP-KGDN--LYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY 106 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 106 (179)
...+.+||++|+++|+++++.| +.+.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus 33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~ 112 (170)
T 2hlw_A 33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN 112 (170)
T ss_dssp CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence 3557899999999999998888 67776 4554 999999999999999999999999999999999999999999999
Q ss_pred ccccc-CCCcEeccCCC--CCCCCcCCHHHHHHHHHHhhc-CCCCCCCCCHHHH
Q 030296 107 HCNVD-SAGNVNLDILK--DSWSPALTITKVLLAVRSMFT-NPSLHNPIVPGIA 156 (179)
Q Consensus 107 HPnv~-~~G~iCl~~l~--~~W~p~~~i~~il~~i~~ll~-~p~~~~p~n~~a~ 156 (179)
||||+ .+|.||+++|. ++|+|+++|++||.+|++||. .|++++|+|.|||
T Consensus 113 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 113 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp CSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred cCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 99999 79999999998 899999999999999999997 5899999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.7e-40 Score=242.43 Aligned_cols=113 Identities=35% Similarity=0.669 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEe--ecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccc--
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAG--PKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIY-- 106 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~--~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-- 106 (179)
|+.+.+||++|++++++++++|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 33344999999999999999999965 88899999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEeccCCCCCCCCcCCHHHHHHHHHHhhc
Q 030296 107 HCNVDSAGNVNLDILKDSWSPALTITKVLLAVRSMFT 143 (179)
Q Consensus 107 HPnv~~~G~iCl~~l~~~W~p~~~i~~il~~i~~ll~ 143 (179)
||||+.+|.||+++|.++|+|+++|++||.+|++||.
T Consensus 100 HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 100 HPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp BTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999984
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.8e-39 Score=247.73 Aligned_cols=121 Identities=25% Similarity=0.561 Sum_probs=105.2
Q ss_pred CCcchHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecccccc
Q 030296 28 TTSVSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYH 107 (179)
Q Consensus 28 ~~~~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 107 (179)
......+.+||++|+++|+++++.||.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ |
T Consensus 9 ~~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~ 86 (187)
T 2f4w_A 9 KRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--N 86 (187)
T ss_dssp -----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred CCCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--C
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccCCCcEeccCC---CCCCCCcCCHHHHHHHHHHhhcCCCCCCC
Q 030296 108 CNVDSAGNVNLDIL---KDSWSPALTITKVLLAVRSMFTNPSLHNP 150 (179)
Q Consensus 108 Pnv~~~G~iCl~~l---~~~W~p~~~i~~il~~i~~ll~~p~~~~p 150 (179)
|||+.+|.||+++| .++|+|+++|.+||.+|+++|.+|+++..
T Consensus 87 ~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 87 GRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp SSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred ceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 99999999999999 58999999999999999999999987644
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=4.7e-39 Score=247.97 Aligned_cols=138 Identities=18% Similarity=0.397 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhhcCC---CCCeEEeecCCCccceEEEEeCC-CCCCCCC-----------CEEEEEEEcCCCCCCCC
Q 030296 32 SASGKRIQREMAELNMDP---PQDCSAGPKGDNLYNWVATIIGP-AGTPYQG-----------GIFFLDITFPTDYPFKP 96 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP~~p 96 (179)
..+.+||++|+++|++++ +.++++.+.++|+++|+++|.|| ++|||+| |.|.++|.||++||++|
T Consensus 26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~P 105 (186)
T 1zuo_A 26 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP 105 (186)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCC
Confidence 357899999999999988 68899999999999999999997 9999998 89999999999999999
Q ss_pred Ceeeeccccccc-cccCCCcEeccCCC-CCCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
Q 030296 97 PKVAFLTRIYHC-NVDSAGNVNLDILK-DSWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYLEDKAKHDQLAAEWT 174 (179)
Q Consensus 97 P~v~f~t~i~HP-nv~~~G~iCl~~l~-~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~ 174 (179)
|+|+|.|++||| ||+.+|.||+++|. ++|+|+++|++||.+|+++|.+|+... .|..++++|.+.++..+
T Consensus 106 P~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~~ 177 (186)
T 1zuo_A 106 PFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQS 177 (186)
T ss_dssp CEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHHH
T ss_pred CeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHHH
Confidence 999999999999 69999999999997 799999999999999999999986543 33445666777777666
Q ss_pred HHH
Q 030296 175 LRF 177 (179)
Q Consensus 175 ~~~ 177 (179)
.+.
T Consensus 178 ~~~ 180 (186)
T 1zuo_A 178 YNS 180 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.94 E-value=5e-28 Score=180.39 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=99.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeee
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGG----------IFFLDITFPTDYPFKPPKVA 100 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~ 100 (179)
.....+||++|++.|++ ++.+.++|++.|.+.+.||++|+|+|| .|.++|.||++||++||+|+
T Consensus 30 ~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~ 103 (172)
T 2z6o_A 30 RELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA 103 (172)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred cHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence 34669999999999998 467788999999999999999999999 99999999999999999999
Q ss_pred eccc-cccccccCCCcEeccCCC-C---CCCCcCCHHHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 030296 101 FLTR-IYHCNVDSAGNVNLDILK-D---SWSPALTITKVLLAVRSMFTNPSLHNPIVPGIAHLYL 160 (179)
Q Consensus 101 f~t~-i~HPnv~~~G~iCl~~l~-~---~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~a~~~~~ 160 (179)
|.++ +|||||+.+|.|||++|. . .|+|.++|.++|.- .+..++..|+..+..
T Consensus 104 F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~ 160 (172)
T 2z6o_A 104 VPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ 160 (172)
T ss_dssp CGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred eCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence 9998 999999999999999995 3 56699999999843 222335556655554
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.81 E-value=5.4e-20 Score=138.04 Aligned_cols=113 Identities=21% Similarity=0.331 Sum_probs=90.4
Q ss_pred HHHHHHHHHhhcCCC---CCeEEeecCCCccceEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeeeeccc-----
Q 030296 36 KRIQREMAELNMDPP---QDCSAGPKGDNLYNWVATIIGPAGTPYQGGI---FFLDITFPTDYPFKPPKVAFLTR----- 104 (179)
Q Consensus 36 ~RL~~E~~~l~~~~~---~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~----- 104 (179)
+|..+|+..+.+.-+ +...+...+|...++.+.+.|.-..+|+|+. |.+.|.||++||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 556677776654321 2223334456666777777777779999999 88999999999999999988651
Q ss_pred -----cc-cccccCCCcEeccCCCCCCCC-cCCHHHHHHHHHHhhcCCCCCC
Q 030296 105 -----IY-HCNVDSAGNVNLDILKDSWSP-ALTITKVLLAVRSMFTNPSLHN 149 (179)
Q Consensus 105 -----i~-HPnv~~~G~iCl~~l~~~W~p-~~~i~~il~~i~~ll~~p~~~~ 149 (179)
|+ ||||+.+|.||+++|. +|+| +.++.++|.+|+++|.+|++|.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 77 9999999999999995 6999 6799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.77 E-value=6.2e-20 Score=133.92 Aligned_cols=90 Identities=20% Similarity=0.323 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeee
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGG----------IFFLDITFPTDYPFKPPKVA 100 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~ 100 (179)
...-..||.+||+.|-+ +++.+.++-..|...+.||++|+|+|+ .|.++|.||.+||.+||+|+
T Consensus 32 ~~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~ 105 (168)
T 3kpa_A 32 GDKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIA 105 (168)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred HHHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEee
Confidence 34578999999999875 455555566789999999999999999 89999999999999999999
Q ss_pred eccc-cccccccCCCcEeccCCCCCCCCcC
Q 030296 101 FLTR-IYHCNVDSAGNVNLDILKDSWSPAL 129 (179)
Q Consensus 101 f~t~-i~HPnv~~~G~iCl~~l~~~W~p~~ 129 (179)
|.+. ++|||++.+|+|||+++ |+|.+
T Consensus 106 Fp~ldgkt~kmYr~GkICLdIh---wkPlW 132 (168)
T 3kpa_A 106 LPELEGKTVKMYRGGKICMTTH---FFPLW 132 (168)
T ss_dssp CGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred cccccCcCccccCCCcEEeccc---cchhh
Confidence 9995 89999999999999997 65544
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.51 E-value=1.4e-14 Score=106.82 Aligned_cols=80 Identities=24% Similarity=0.508 Sum_probs=70.9
Q ss_pred CCCccceEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeeeeccc------cccccccCCCcEeccCCCCCCCC-cC
Q 030296 59 GDNLYNWVATIIGPAGTPYQGGIFFL--DITFPTDYPFKPPKVAFLTR------IYHCNVDSAGNVNLDILKDSWSP-AL 129 (179)
Q Consensus 59 ~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~HPnv~~~G~iCl~~l~~~W~p-~~ 129 (179)
..+++.|.++|. .+|+|+.|.+ .|.||++||++||.| |.++ ..||||+.+|.||++.|.+ |++ ..
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTC
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCC
Confidence 367889999997 6799999995 899999999999999 7766 4899999999999999965 987 78
Q ss_pred CHHHHHHHHHHhhcC
Q 030296 130 TITKVLLAVRSMFTN 144 (179)
Q Consensus 130 ~i~~il~~i~~ll~~ 144 (179)
+|.+++..|+.+|.+
T Consensus 124 nL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 124 DLLGLIQVMIVVFGD 138 (146)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998864
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.0053 Score=43.27 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecc
Q 030296 34 SGKRIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLT 103 (179)
Q Consensus 34 ~~~RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 103 (179)
...+...|+..|..--+..+.+. .+....+.+.|....+..-+.-.+.+.|.||++||..||.|.+..
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 45667889988876444445442 223455566665222222234468899999999999999998654
No 57
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=96.58 E-value=0.037 Score=40.43 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhcCCC--CCeEEeec-------------CCC-c--cceEEEEeCCCCCCCCCCEEEEEEEcCCCCCC
Q 030296 33 ASGKRIQREMAELNMDPP--QDCSAGPK-------------GDN-L--YNWVATIIGPAGTPYQGGIFFLDITFPTDYPF 94 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~--~~~~~~~~-------------~~~-~--~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~ 94 (179)
....+...|+..|..--+ .-+.+.-. ..+ + ..+.+.|.- .+ + ...+.+.|.+|++||.
T Consensus 14 ~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~-~~-~--~~~i~L~v~lP~~YP~ 89 (154)
T 2daw_A 14 ESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQI-EE-P--KVKIDLQVTMPHSYPY 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEE-TT-T--TEEEEEEEEECSSTTS
T ss_pred hhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEec-CC-C--CceEEEEEEcCCCCCC
Confidence 445667778888876433 34444210 001 2 244444431 11 1 1378999999999999
Q ss_pred CCCeeeecc
Q 030296 95 KPPKVAFLT 103 (179)
Q Consensus 95 ~pP~v~f~t 103 (179)
.+|.|....
T Consensus 90 ~~P~i~l~~ 98 (154)
T 2daw_A 90 LALQLFGRS 98 (154)
T ss_dssp SCCEEEEEC
T ss_pred CCCcEEEEe
Confidence 999997554
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.55 E-value=0.029 Score=39.93 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCCeEEeecC------CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecc
Q 030296 31 VSASGKRIQREMAELNMDPPQDCSAGPKG------DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLT 103 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l~~~~~~~~~~~~~~------~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t 103 (179)
|.....+...|+..|..--+..+.+.... +....+.+.|.+..+ .-..-.+.+.|.+|++||..||.|.+..
T Consensus 8 ~~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 8 LDQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred ccchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 44556677889988887544444332110 124567777773222 2123478899999999999999998654
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.05 E-value=0.016 Score=40.72 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCCCCeEEeecC--CCccceEEEEeCCCCCCC--CCCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 37 RIQREMAELNMDPPQDCSAGPKG--DNLYNWVATIIGPAGTPY--QGGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 37 RL~~E~~~l~~~~~~~~~~~~~~--~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
....|+..|..--+..+.+.... .+...+.+.|..+.+..- ..-.+.+.|.+|++||..+|.|.+.+.
T Consensus 12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 47788888876544555543221 234445555652222111 124688999999999999999987653
No 60
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.23 E-value=0.087 Score=36.91 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCCC--CeEEee-cCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 030296 38 IQREMAELNMDPPQ--DCSAGP-KGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFL 102 (179)
Q Consensus 38 L~~E~~~l~~~~~~--~~~~~~-~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~ 102 (179)
...|+..|..--+. .+.+.. ...+...+.+.|.. .+..-..-.+.+.|.+|++||..||.|.+.
T Consensus 12 q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 12 VQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp HHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred HHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence 56788777653222 333321 11234567777763 221111247899999999999999998754
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.06 E-value=0.3 Score=36.81 Aligned_cols=83 Identities=12% Similarity=0.202 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcCCCCCeEEeecCCCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccccccccccCCCcE
Q 030296 37 RIQREMAELNMDPPQDCSAGPKGDNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTRIYHCNVDSAGNV 116 (179)
Q Consensus 37 RL~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~i 116 (179)
+|.+|+.++-=+. +.-.++++....+.+... .|..+.+.|.++.+||.+||.+...-|. |
T Consensus 5 ~li~Ei~~iGW~~-----l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~-------- 64 (186)
T 3zqs_A 5 SLIEEIGTLGWDK-----LVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--P-------- 64 (186)
T ss_dssp SHHHHHHHHCGGG-----EEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--C--------
T ss_pred HHHHHHHHhCCce-----eeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--C--------
Confidence 5777887773211 222346688888888743 3678899999999999999988755553 0
Q ss_pred eccCCCCCCCCcCCHHHHHHHHHHhhc
Q 030296 117 NLDILKDSWSPALTITKVLLAVRSMFT 143 (179)
Q Consensus 117 Cl~~l~~~W~p~~~i~~il~~i~~ll~ 143 (179)
+.-.|+|..++..++.+.+..+.
T Consensus 65 ----~~~~w~~~ssL~~v~~qF~~~Le 87 (186)
T 3zqs_A 65 ----FCASWTPQSSLISIYSQFLAAIE 87 (186)
T ss_dssp ----CCCCCCTTCCHHHHHHHHHHHHH
T ss_pred ----cccccCCCccHHHHHHHHHHHHH
Confidence 11369999999998888777663
No 62
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.80 E-value=0.17 Score=35.65 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCeEEeecCC-----CccceEEEEeCCCC-C-CCCCCEEEEEEEcCCCCCCCCCeeeec
Q 030296 33 ASGKRIQREMAELNMDPPQDCSAGPKGD-----NLYNWVATIIGPAG-T-PYQGGIFFLDITFPTDYPFKPPKVAFL 102 (179)
Q Consensus 33 ~~~~RL~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~ 102 (179)
....+...|+..|..--+..+....... ....+.+.|. +.+ . .-..-.+.+.|.||++||..+|.|.+.
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence 3445678888888764444444421111 1345566665 221 1 111246899999999999999999874
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=94.38 E-value=0.36 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEEEcCCCCCCCCCeeeeccc
Q 030296 81 IFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 81 ~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
.+.+.|.+|++||..||.|.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999986543
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=90.50 E-value=0.049 Score=37.55 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 145 PSLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 145 p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.....|.+.++|++|++|++.|.+.||.|+.-+|
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp ----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCc
Confidence 3556789999999999999999999999996655
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=69.19 E-value=5.4 Score=19.33 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCe
Q 030296 32 SASGKRIQREMAELNMDPPQDC 53 (179)
Q Consensus 32 ~~~~~RL~~E~~~l~~~~~~~~ 53 (179)
-+-+.||.-|+...+.++|+|.
T Consensus 4 lseldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 4 LSELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHHhhhccCCCCCC
Confidence 3467899999999999998874
No 66
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=38.13 E-value=68 Score=27.74 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++..+|++.|.+.|++...+|.
T Consensus 278 ee~~~l~~~dp~~~~~~~~~Sm~rhv 303 (552)
T 2fkn_A 278 DEADRLRQDTPELYVRLAKQSMKKHV 303 (552)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 37777888999999999999988874
No 67
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=37.58 E-value=70 Score=27.65 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++..+|++.|.+.|++...+|.
T Consensus 277 ee~~~l~~~dp~~~~~~~~~Sm~rhv 302 (551)
T 1x87_A 277 DEAAELRARDPKQYIARAKQSIAAHV 302 (551)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47777888999999999999988874
No 68
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=36.76 E-value=73 Score=27.59 Aligned_cols=26 Identities=8% Similarity=-0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHc
Q 030296 153 PGIAHLYLEDKAKHDQLAAEWTLRFA 178 (179)
Q Consensus 153 ~~a~~~~~~d~~~f~~~ar~~~~~~a 178 (179)
.|+.++..+|++.|.+.|++...+|.
T Consensus 282 ee~~~l~~~dp~~~~~~~~~Sm~rhv 307 (557)
T 1uwk_A 282 EQYRDRAQTEPAAVVKAAKQSMAVHV 307 (557)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 37777888999999999999988874
No 69
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=31.03 E-value=1.1e+02 Score=22.47 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCccceEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeeccc
Q 030296 60 DNLYNWVATIIGPAGTPYQGGIFFLDITFPTDYPFKPPKVAFLTR 104 (179)
Q Consensus 60 ~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~ 104 (179)
+...+|.+-+.|+.+.-...-+=++.+.+.+.||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45779999999876643334466788889999975 66666555
No 70
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=27.20 E-value=52 Score=24.83 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeeeecc
Q 030296 78 QGGIFFLDITFPTDYPF-----KPPKVAFLT 103 (179)
Q Consensus 78 ~gg~f~~~i~fp~~YP~-----~pP~v~f~t 103 (179)
+.|.|.|.-.+|--||. .||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46889999999999998 788887753
No 71
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=26.24 E-value=35 Score=22.15 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHh
Q 030296 31 VSASGKRIQREMAEL 45 (179)
Q Consensus 31 ~~~~~~RL~~E~~~l 45 (179)
.-..+|||++||+-|
T Consensus 60 ~LsQLKRvQRdlrGL 74 (87)
T 2rf4_B 60 SISQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCC
Confidence 346799999999876
No 72
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=26.17 E-value=64 Score=23.95 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=34.7
Q ss_pred EEEEEEcCCCCCCCCCeeeecccc--ccc--cccCCCcEeccCCCCCCCCcCCHHHHHHHHH
Q 030296 82 FFLDITFPTDYPFKPPKVAFLTRI--YHC--NVDSAGNVNLDILKDSWSPALTITKVLLAVR 139 (179)
Q Consensus 82 f~~~i~fp~~YP~~pP~v~f~t~i--~HP--nv~~~G~iCl~~l~~~W~p~~~i~~il~~i~ 139 (179)
..+.|++.+..|...|.++|..+- -+| +...++ + ..|.+..++.+=|..|.
T Consensus 126 vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~~~~~n-----l--~~Wd~~~~i~~NL~~il 180 (186)
T 3zqs_A 126 VSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRN-----I--HLWDPENSVLQNLKDVL 180 (186)
T ss_dssp EEEEEECCTTSTTSCCEEEEEECHHHHHHHHHHHHHH-----G--GGCCTTSCHHHHHHHHH
T ss_pred cEEEEEECCCCCCcCCceEEECChHHHHHHHHHHhhh-----H--hhcCCCCCHHHHHHHHH
Confidence 678899999999999999999761 111 111110 0 46999998876666554
No 73
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=24.31 E-value=76 Score=19.05 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHCHHHHHHHH
Q 030296 151 IVPGIAHLYLEDKAKHDQLA 170 (179)
Q Consensus 151 ~n~~a~~~~~~d~~~f~~~a 170 (179)
-|++.+++..+|+++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 58889999999999998865
No 74
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=22.04 E-value=1.2e+02 Score=22.00 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=27.3
Q ss_pred CccceEEEEeCCCCC-------------CCCCCEEEEEEEcCCCCCCCCCe
Q 030296 61 NLYNWVATIIGPAGT-------------PYQGGIFFLDITFPTDYPFKPPK 98 (179)
Q Consensus 61 ~~~~w~~~i~Gp~~t-------------py~gg~f~~~i~fp~~YP~~pP~ 98 (179)
+-.+|.++..|..++ |..-|.++|.+..++=.|.+-|.
T Consensus 36 ~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 36 SDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp SCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred CCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 445899999886655 66779999999885545555554
No 75
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=21.57 E-value=77 Score=19.74 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHCHHHHHHHHH
Q 030296 151 IVPGIAHLYLEDKAKHDQLAA 171 (179)
Q Consensus 151 ~n~~a~~~~~~d~~~f~~~ar 171 (179)
-|++.+++..+|+++|.+...
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll~ 59 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQMLN 59 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHHc
Confidence 588999999999999998763
No 76
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=20.92 E-value=75 Score=22.27 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHH------hhcCC--CCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHH
Q 030296 129 LTITKVLLAVRS------MFTNP--SLHNPIVPGIAHLYLEDKAKHDQLAAEWTLRF 177 (179)
Q Consensus 129 ~~i~~il~~i~~------ll~~p--~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 177 (179)
-++..+|..|+. .+.+| .++.|...++ |.++++..++++
T Consensus 91 ~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~----------Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 91 GPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSEL----------FRSRLDSYVRSL 137 (145)
T ss_dssp CCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHH----------HHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHH----------HHHHHHHHHHhC
Confidence 367888888884 56677 5666765543 777777777654
No 77
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=20.81 E-value=2.3e+02 Score=19.97 Aligned_cols=43 Identities=9% Similarity=0.217 Sum_probs=31.2
Q ss_pred ccceE--EEEeCCCCCCCC-CCEEEEEEEcCCCCCCCCCeeeeccccc
Q 030296 62 LYNWV--ATIIGPAGTPYQ-GGIFFLDITFPTDYPFKPPKVAFLTRIY 106 (179)
Q Consensus 62 ~~~w~--~~i~Gp~~tpy~-gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 106 (179)
...|. +.+.|+.+.... .-+=++.+.+.+.|+ .|...+..|-|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 36898 888998887654 345567888888887 48777776644
Done!