BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030297
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 140/179 (78%), Gaps = 4/179 (2%)

Query: 1   MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
           MN+VGTLCVYAAICKHEG  L F G K  W+G+S+ SDADLIAE  IWAAVDP A+NEAF
Sbjct: 190 MNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAF 249

Query: 61  NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
           N +NGDVFKWKH WKVLAEQF +E    G+ +    ++L+++MKGKE VWEEIVREN L 
Sbjct: 250 NVSNGDVFKWKHFWKVLAEQFGVE---CGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLT 306

Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
           PTKL +V +W + D+++     +  SMNKSKEHGFLGFRNSKN+F++WI + K+++IVP
Sbjct: 307 PTKLKDVGIWWFGDVILG-NECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364


>pdb|4AAY|B Chain B, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
 pdb|4AAY|D Chain D, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
 pdb|4AAY|F Chain F, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
 pdb|4AAY|H Chain H, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
          Length = 175

 Score = 32.3 bits (72), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 5   GTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADL-IAEQEIWAAVDPNARNEAFNCT 63
           G +  ++ IC H+GFPL +    +T+     +S  D     Q++W     N         
Sbjct: 94  GDIVGFSTICPHKGFPLSYSADNKTFNCPGHFSVFDPEKGGQQVWGQATQNLPQYVLRVA 153

Query: 64  -NGDVF 68
            NGD+F
Sbjct: 154 DNGDIF 159


>pdb|2I1S|A Chain A, Crystal Structure Of Protein Of Unknown Function Mm3350
           From Methanosarcina Mazei Go1
 pdb|2I1S|B Chain B, Crystal Structure Of Protein Of Unknown Function Mm3350
           From Methanosarcina Mazei Go1
          Length = 188

 Score = 28.1 bits (61), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 77  LAEQFEIEN------YGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVW 130
           L++ F +EN      Y FGD     +VRLE+I+  KE V   I    +      +   VW
Sbjct: 90  LSDYFTLENKEALYTYDFGD-NWQVKVRLEKILPRKEGVEYPICTAGKRAAVPEDSGGVW 148

Query: 131 SYADMV 136
            Y +M+
Sbjct: 149 GYEEML 154


>pdb|1RCQ|A Chain A, The 1.45 A Crystal Structure Of Alanine Racemase From A
          Pathogenic Bacterium, Pseudomonas Aeruginosa, Contains
          Both Internal And External Aldimine Forms
          Length = 357

 Score = 26.6 bits (57), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 10 YAAICKHEGFPLLFPGTKET---WEGFSEYSDADLIAEQEIWAAV 51
          +A  C  EG  L   G ++     EGF E S+ +LI   + W  V
Sbjct: 55 FAVACIEEGLELREAGIRQPILLLEGFFEASELELIVAHDFWCVV 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,032,748
Number of Sequences: 62578
Number of extensions: 250415
Number of successful extensions: 597
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)