BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030297
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STX2|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana
GN=VEP1 PE=1 SV=1
Length = 388
Score = 253 bits (645), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 145/179 (81%), Gaps = 4/179 (2%)
Query: 1 MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
MNIVGTLCVYAAICKHEG PLLFPG+K+ WEGF SDADLIAEQ+IWAAVDP A+NEAF
Sbjct: 214 MNIVGTLCVYAAICKHEGSPLLFPGSKKAWEGFMTASDADLIAEQQIWAAVDPYAKNEAF 273
Query: 61 NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
NC N D+FKWKHLWK+LAEQF IE YGF + K + L E+MKGKE VWEE+V+ENQLQ
Sbjct: 274 NCNNADIFKWKHLWKILAEQFGIEEYGFEEGK---NLGLVEMMKGKERVWEEMVKENQLQ 330
Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
KL EV VW +AD+++ V G SMNKSKE+GFLGFRNS NSF++WI + K+ +IVP
Sbjct: 331 EKKLEEVGVWWFADVILGV-EGMIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388
>sp|Q6PQJ9|5BPOR_DIGLA 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Digitalis lanata PE=1
SV=1
Length = 389
Score = 232 bits (592), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 112/179 (62%), Positives = 140/179 (78%), Gaps = 4/179 (2%)
Query: 1 MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
MN+VGTLCVYAAICKHEG L F G K W+G+S+ SDADLIAE IWAAVDP A+NEAF
Sbjct: 215 MNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAF 274
Query: 61 NCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQ 120
N +NGDVFKWKH WKVLAEQF + G G+ + ++L+++MKGKE VWEEIVREN L
Sbjct: 275 NVSNGDVFKWKHFWKVLAEQFGV---GCGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLT 331
Query: 121 PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
PTKL +V +W + D+++ + SMNKSKEHGFLGFRNSKN+F++WI + K+++IVP
Sbjct: 332 PTKLKDVGIWWFGDVILG-NECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 389
>sp|O74913|YJ72_SCHPO Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC757.02c PE=4 SV=1
Length = 405
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 92/215 (42%), Gaps = 39/215 (18%)
Query: 1 MNIVGTLCVYAAICKHEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAF 60
MN T+ +YA +C+ P FPG ++ + GF + S + LIA+ ++W E F
Sbjct: 192 MNEAFTIALYALVCRELHEPFRFPGNEKFYLGFDDISYSKLIADFQLWMTFKAECSEEKF 251
Query: 61 NCTNGDVFKWKHLWKVLAEQFEIE--------NYGFGDE--------------------- 91
N NGD+ W W +AE F +E ++ E
Sbjct: 252 NIVNGDIHSWSRTWPKIAEYFGVEVPKNQFATDFTLSTEVTLSTPSPINLYEKELGIKHT 311
Query: 92 ---KGSERVRLEEIMKGK--ESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSV- 145
K ++ L++ +K K + W I +L L EV W++ D + G Y+V
Sbjct: 312 PNSKIINQISLQQWVKQKKVQDAWRTIAEREKLNAHAL-EVGTWAFCDFLF--GRTYNVI 368
Query: 146 -SMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179
SM+K+++ G+ + ++ + F LK + +P
Sbjct: 369 SSMSKARKLGYTDYYDTFDGFKETFDELKKQKQIP 403
>sp|Q65Q31|RHAS_MANSM HTH-type transcriptional activator RhaS OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=rhaS PE=3 SV=1
Length = 268
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 54 NARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113
NA +E++N N +F ++ L + A QF YG +EKG + +R E KE WEE+
Sbjct: 132 NAIDESYNLQNECLF-FQVLSSIQAHQFNDSGYGNTEEKGRQMIRWLENNFEKEIDWEEL 190
>sp|Q9X9J5|FLGH1_VIBPA Flagellar L-ring protein 1 OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=flgH1 PE=3 SV=1
Length = 259
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 14/132 (10%)
Query: 40 DLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRL 99
D +A WA + P + E + G +F +H+ + + + G GD V L
Sbjct: 58 DPVAGDPAWAPIHPKQKPEHYAAATGSLFSPEHITDLYDDS---KPRGIGDII---TVTL 111
Query: 100 EEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFR 159
+E +S ++ + N+ Q ++ + V + VG Y+ S + + + F G
Sbjct: 112 DETTSATKSANADLSKTNEAQ---MDPLQVGGEE---LKVGGKYNFSYDLNNTNTFAGDS 165
Query: 160 NSK--NSFVAWI 169
++K NS +I
Sbjct: 166 SAKQSNSISGYI 177
>sp|O70902|ENV_HV190 Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1
group M subtype H (isolate 90CF056) GN=env PE=3 SV=1
Length = 845
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 14/125 (11%)
Query: 54 NARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113
N R E F C +F W++ NY D KG+E + L +K ++W+ +
Sbjct: 368 NCRGEFFYCNTSGLFNSS--WEMHT------NYTSNDTKGNENITLPCRIKQIVNMWQRV 419
Query: 114 VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLK 173
R P + N + V + +++ + G + + N + G R++ W L
Sbjct: 420 GRAMYAPPIQGNIMCVSNITGLILTIDEGNASAENYTFRPGGGDMRDN------WRSELY 473
Query: 174 SHRIV 178
+++V
Sbjct: 474 KYKVV 478
>sp|Q80TA9|EPG5_MOUSE Ectopic P granules protein 5 homolog OS=Mus musculus GN=Epg5 PE=2
SV=2
Length = 2572
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 73 LWKVLAEQFEIENYGFGDE------KGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNE 126
L+ V E EN+ GD K + RL ++M+ ++ +W E V ++Q
Sbjct: 1396 LFNVYVLWLEDENFQKGDTYIPSLPKHYDVHRLAKVMQNQQDLWMEYVNMERIQHEFQET 1455
Query: 127 VAVWSYADM 135
VA+W+ A +
Sbjct: 1456 VALWTQAKL 1464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,167,628
Number of Sequences: 539616
Number of extensions: 2962629
Number of successful extensions: 6673
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6663
Number of HSP's gapped (non-prelim): 9
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)