Query 030297
Match_columns 179
No_of_seqs 116 out of 492
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00016 RNA-binding protein; 99.1 2.3E-10 5E-15 97.8 8.9 125 17-178 230-356 (378)
2 PRK10217 dTDP-glucose 4,6-dehy 99.0 8.8E-10 1.9E-14 92.9 8.3 123 17-175 210-334 (355)
3 PRK15181 Vi polysaccharide bio 98.9 5E-09 1.1E-13 88.6 9.5 119 17-175 219-340 (348)
4 PLN02725 GDP-4-keto-6-deoxyman 98.9 1.5E-08 3.3E-13 83.2 11.4 112 16-174 187-299 (306)
5 PRK10084 dTDP-glucose 4,6 dehy 98.9 1.6E-08 3.4E-13 85.2 11.4 120 17-175 217-337 (352)
6 PLN02653 GDP-mannose 4,6-dehyd 98.9 1.3E-08 2.9E-13 85.4 10.8 112 18-173 216-329 (340)
7 TIGR03466 HpnA hopanoid-associ 98.9 2.6E-08 5.6E-13 82.4 12.2 126 34-178 202-328 (328)
8 KOG1430 C-3 sterol dehydrogena 98.9 6.9E-09 1.5E-13 88.3 8.7 133 25-176 209-349 (361)
9 PLN02427 UDP-apiose/xylose syn 98.9 2E-08 4.3E-13 85.9 10.2 125 17-174 243-370 (386)
10 TIGR01472 gmd GDP-mannose 4,6- 98.8 5.8E-08 1.3E-12 81.7 10.7 124 24-174 217-341 (343)
11 PLN02240 UDP-glucose 4-epimera 98.8 5.1E-08 1.1E-12 81.9 10.0 99 35-176 239-342 (352)
12 PLN02206 UDP-glucuronate decar 98.8 2.8E-08 6.2E-13 87.1 8.8 110 18-175 315-425 (442)
13 PRK11150 rfaD ADP-L-glycero-D- 98.8 3.7E-08 8E-13 81.5 9.0 107 22-173 200-307 (308)
14 PRK08125 bifunctional UDP-gluc 98.8 3.8E-08 8.1E-13 90.1 9.4 128 17-176 521-653 (660)
15 PRK11908 NAD-dependent epimera 98.8 6.6E-08 1.4E-12 81.5 10.1 128 17-175 207-338 (347)
16 PLN02166 dTDP-glucose 4,6-dehy 98.7 4.3E-08 9.3E-13 85.8 8.9 109 18-174 316-425 (436)
17 PLN02989 cinnamyl-alcohol dehy 98.7 6.7E-08 1.4E-12 80.5 9.4 99 35-178 226-325 (325)
18 PLN02260 probable rhamnose bio 98.7 5.7E-08 1.2E-12 88.9 9.4 115 17-176 209-323 (668)
19 TIGR01181 dTDP_gluc_dehyt dTDP 98.7 6.6E-08 1.4E-12 79.4 8.9 114 17-176 200-314 (317)
20 PRK10675 UDP-galactose-4-epime 98.7 8.1E-08 1.8E-12 80.2 9.0 98 34-174 231-331 (338)
21 PLN02695 GDP-D-mannose-3',5'-e 98.7 9.2E-08 2E-12 81.8 9.1 108 18-174 223-331 (370)
22 TIGR02197 heptose_epim ADP-L-g 98.7 9.1E-08 2E-12 78.9 8.7 99 34-173 214-313 (314)
23 TIGR01214 rmlD dTDP-4-dehydror 98.6 1.2E-07 2.6E-12 77.4 8.0 114 18-170 170-285 (287)
24 PLN02214 cinnamoyl-CoA reducta 98.6 3E-07 6.6E-12 77.6 10.5 100 35-179 224-323 (342)
25 TIGR02622 CDP_4_6_dhtase CDP-g 98.6 3.2E-07 7E-12 77.4 8.7 114 17-174 210-330 (349)
26 PLN02986 cinnamyl-alcohol dehy 98.5 4.9E-07 1.1E-11 75.3 9.3 98 35-178 225-322 (322)
27 PLN02662 cinnamyl-alcohol dehy 98.5 8.7E-07 1.9E-11 73.4 9.6 99 34-178 223-321 (322)
28 TIGR01179 galE UDP-glucose-4-e 98.5 7.2E-07 1.6E-11 73.4 8.8 98 34-174 226-327 (328)
29 TIGR01777 yfcH conserved hypot 98.4 8.4E-07 1.8E-11 72.2 8.0 102 25-164 189-291 (292)
30 KOG0747 Putative NAD+-dependen 98.4 7.5E-07 1.6E-11 73.3 7.4 119 16-175 206-325 (331)
31 PLN02572 UDP-sulfoquinovose sy 98.4 1.1E-06 2.4E-11 77.0 8.1 113 17-174 295-415 (442)
32 COG1088 RfbB dTDP-D-glucose 4, 98.4 1.2E-06 2.7E-11 72.5 7.0 117 16-175 201-319 (340)
33 PRK05865 hypothetical protein; 98.3 2.6E-06 5.7E-11 79.9 9.8 103 34-174 155-258 (854)
34 PLN02650 dihydroflavonol-4-red 98.3 3.3E-06 7.2E-11 71.2 9.6 100 35-179 227-326 (351)
35 CHL00194 ycf39 Ycf39; Provisio 98.3 2.6E-06 5.6E-11 71.1 8.3 121 33-170 173-297 (317)
36 COG0451 WcaG Nucleoside-diphos 98.3 7.2E-06 1.6E-10 67.2 9.4 116 16-176 194-312 (314)
37 PLN00198 anthocyanidin reducta 98.2 1.5E-05 3.3E-10 66.8 11.1 99 34-178 238-336 (338)
38 PLN02896 cinnamyl-alcohol dehy 98.2 1.2E-05 2.6E-10 68.0 10.3 100 35-179 247-346 (353)
39 PRK07201 short chain dehydroge 98.2 2.5E-05 5.4E-10 71.1 12.2 121 34-171 220-350 (657)
40 PF01073 3Beta_HSD: 3-beta hyd 98.1 1.2E-05 2.6E-10 66.4 7.0 67 18-87 200-274 (280)
41 PRK09987 dTDP-4-dehydrorhamnos 97.8 7.7E-05 1.7E-09 61.8 7.4 100 39-173 193-294 (299)
42 TIGR01746 Thioester-redct thio 97.7 0.0033 7.1E-08 52.3 15.1 125 34-178 230-367 (367)
43 COG1087 GalE UDP-glucose 4-epi 97.6 0.00048 1E-08 57.5 8.6 99 31-173 219-322 (329)
44 KOG1502 Flavonol reductase/cin 97.4 0.0012 2.7E-08 55.7 9.1 100 36-179 228-327 (327)
45 PLN02778 3,5-epimerase/4-reduc 97.1 0.0055 1.2E-07 50.9 10.1 101 35-176 193-295 (298)
46 PLN02657 3,8-divinyl protochlo 97.1 0.0038 8.3E-08 53.9 8.9 68 17-86 233-301 (390)
47 PLN02686 cinnamoyl-CoA reducta 97.0 0.001 2.3E-08 56.8 4.9 51 35-86 276-328 (367)
48 COG1089 Gmd GDP-D-mannose dehy 97.0 0.0041 8.9E-08 51.7 7.8 122 17-171 210-337 (345)
49 COG1090 Predicted nucleoside-d 96.9 0.0084 1.8E-07 49.6 9.4 124 6-170 170-295 (297)
50 PLN02996 fatty acyl-CoA reduct 96.9 0.0016 3.5E-08 58.0 5.5 67 16-85 290-361 (491)
51 KOG1431 GDP-L-fucose synthetas 96.9 0.0047 1E-07 50.0 7.2 109 18-174 195-308 (315)
52 PF04321 RmlD_sub_bind: RmlD s 96.9 0.00035 7.5E-09 57.8 0.7 99 35-172 182-285 (286)
53 TIGR03649 ergot_EASG ergot alk 96.6 0.0091 2E-07 48.7 7.5 55 32-86 164-218 (285)
54 PF13950 Epimerase_Csub: UDP-g 96.6 0.0027 5.8E-08 40.8 3.1 33 142-174 24-57 (62)
55 PF01370 Epimerase: NAD depend 96.5 0.0017 3.7E-08 50.9 2.3 45 16-63 192-236 (236)
56 KOG1429 dTDP-glucose 4-6-dehyd 96.1 0.072 1.6E-06 44.5 9.9 109 18-174 223-332 (350)
57 TIGR03589 PseB UDP-N-acetylglu 96.1 0.016 3.4E-07 48.6 6.2 48 35-84 200-247 (324)
58 PLN02260 probable rhamnose bio 95.7 0.041 9E-07 50.6 7.5 45 36-82 565-609 (668)
59 TIGR03443 alpha_am_amid L-amin 95.5 0.22 4.8E-06 49.3 12.2 129 34-179 1214-1356(1389)
60 PLN02503 fatty acyl-CoA reduct 94.9 0.025 5.4E-07 51.8 3.6 65 17-84 405-475 (605)
61 COG1091 RfbD dTDP-4-dehydrorha 94.9 0.11 2.4E-06 43.2 6.9 55 32-87 178-232 (281)
62 KOG1371 UDP-glucose 4-epimeras 94.5 0.16 3.5E-06 43.0 7.1 97 35-174 235-334 (343)
63 PLN02583 cinnamoyl-CoA reducta 93.3 0.16 3.5E-06 41.9 4.9 49 34-83 217-265 (297)
64 KOG1372 GDP-mannose 4,6 dehydr 90.9 2.4 5.2E-05 35.1 8.8 120 23-170 244-364 (376)
65 KOG2865 NADH:ubiquinone oxidor 84.4 2.7 6E-05 35.4 5.6 72 7-82 222-294 (391)
66 PRK12320 hypothetical protein; 81.6 2.1 4.6E-05 40.0 4.4 43 36-80 160-202 (699)
67 PRK06077 fabG 3-ketoacyl-(acyl 70.7 5.5 0.00012 31.2 3.5 33 35-67 214-246 (252)
68 PRK07806 short chain dehydroge 69.0 5.7 0.00012 31.2 3.2 34 35-68 212-245 (248)
69 PRK05875 short chain dehydroge 67.4 10 0.00022 30.3 4.5 49 36-84 219-273 (276)
70 PLN00141 Tic62-NAD(P)-related 67.1 9.2 0.0002 30.4 4.1 45 35-79 203-250 (251)
71 PF05368 NmrA: NmrA-like famil 66.7 4.7 0.0001 31.6 2.3 49 37-86 180-230 (233)
72 PRK07074 short chain dehydroge 66.4 9.9 0.00021 30.0 4.2 46 33-78 206-253 (257)
73 PRK09135 pteridine reductase; 64.8 7.7 0.00017 30.2 3.2 34 36-69 214-248 (249)
74 PRK09134 short chain dehydroge 61.9 9.2 0.0002 30.3 3.2 36 36-71 214-249 (258)
75 PF07582 AP_endonuc_2_N: AP en 59.8 15 0.00033 22.8 3.2 28 148-175 7-43 (55)
76 PF12268 DUF3612: Protein of u 59.2 2.2 4.8E-05 32.1 -0.8 16 12-28 22-37 (178)
77 PRK07067 sorbitol dehydrogenas 57.5 12 0.00026 29.6 3.1 35 35-69 221-257 (257)
78 PRK12825 fabG 3-ketoacyl-(acyl 52.6 17 0.00037 28.0 3.3 33 36-68 214-248 (249)
79 PF13812 PPR_3: Pentatricopept 50.4 21 0.00045 18.5 2.5 18 162-179 17-34 (34)
80 PRK08263 short chain dehydroge 48.2 21 0.00045 28.6 3.2 47 37-83 218-264 (275)
81 PF11248 DUF3046: Protein of u 47.9 18 0.00039 23.2 2.2 46 36-85 16-61 (63)
82 PRK12429 3-hydroxybutyrate deh 46.8 23 0.00049 27.7 3.2 32 34-65 221-254 (258)
83 PF14044 NETI: NETI protein 46.3 16 0.00034 22.9 1.7 18 162-179 7-24 (57)
84 KOG3019 Predicted nucleoside-d 45.7 58 0.0013 26.8 5.2 59 29-88 207-265 (315)
85 PRK13394 3-hydroxybutyrate deh 43.2 28 0.00061 27.3 3.2 33 34-66 225-259 (262)
86 PRK06482 short chain dehydroge 42.9 28 0.0006 27.8 3.2 44 37-81 219-262 (276)
87 TIGR01963 PHB_DH 3-hydroxybuty 41.1 32 0.00069 26.8 3.2 33 35-67 219-253 (255)
88 COG0702 Predicted nucleoside-d 38.7 80 0.0017 24.7 5.2 56 33-88 170-225 (275)
89 PF05089 NAGLU: Alpha-N-acetyl 38.4 14 0.0003 31.6 0.7 89 68-179 16-111 (333)
90 PRK12829 short chain dehydroge 38.3 42 0.0009 26.3 3.5 33 35-67 228-262 (264)
91 PRK07774 short chain dehydroge 36.4 38 0.00082 26.3 3.0 33 36-68 214-248 (250)
92 PF00325 Crp: Bacterial regula 35.0 43 0.00094 18.4 2.1 18 161-178 15-32 (32)
93 PF03564 DUF1759: Protein of u 31.9 46 0.00099 24.1 2.6 60 64-123 2-73 (145)
94 PRK05653 fabG 3-ketoacyl-(acyl 31.1 59 0.0013 24.9 3.3 33 35-67 211-245 (246)
95 KOG1221 Acyl-CoA reductase [Li 31.0 86 0.0019 28.1 4.5 57 23-82 269-332 (467)
96 PF13369 Transglut_core2: Tran 30.5 35 0.00076 25.3 1.8 56 5-83 69-130 (152)
97 PF09441 Abp2: ARS binding pro 30.1 2.4E+02 0.0053 21.6 6.1 19 108-126 71-89 (175)
98 PF07904 Eaf7: Chromatin modif 30.0 43 0.00094 22.9 2.0 29 59-87 35-63 (91)
99 TIGR00756 PPR pentatricopeptid 27.3 82 0.0018 15.8 2.5 16 164-179 18-33 (35)
100 PRK07041 short chain dehydroge 26.3 85 0.0018 24.0 3.4 31 37-67 198-228 (230)
101 CHL00082 psbZ photosystem II p 25.8 53 0.0012 21.0 1.7 36 1-37 1-40 (62)
102 PRK12384 sorbitol-6-phosphate 25.5 73 0.0016 25.0 2.9 33 35-67 223-257 (259)
103 PRK12935 acetoacetyl-CoA reduc 25.4 86 0.0019 24.3 3.3 33 34-66 212-245 (247)
104 PF11784 DUF3320: Protein of u 24.9 1.6E+02 0.0035 17.7 3.7 42 33-86 4-45 (52)
105 PRK06914 short chain dehydroge 24.7 77 0.0017 25.2 2.9 35 36-71 226-260 (280)
106 PRK05557 fabG 3-ketoacyl-(acyl 24.2 97 0.0021 23.7 3.3 31 36-66 213-245 (248)
107 cd08315 Death_TRAILR_DR4_DR5 D 24.1 73 0.0016 21.9 2.3 19 108-126 20-38 (96)
108 TIGR01830 3oxo_ACP_reduc 3-oxo 23.8 1E+02 0.0022 23.5 3.4 30 36-65 206-237 (239)
109 PRK07060 short chain dehydroge 23.7 1.1E+02 0.0023 23.6 3.5 32 35-66 209-242 (245)
110 PF04748 Polysacc_deac_2: Dive 23.3 2.8E+02 0.0062 21.8 5.9 125 35-177 70-203 (213)
111 PRK12746 short chain dehydroge 23.3 99 0.0021 24.1 3.3 31 35-65 219-251 (254)
112 PRK13276 cell wall biosynthesi 23.2 1.1E+02 0.0024 24.7 3.5 28 147-174 174-203 (224)
113 cd06396 PB1_NBR1 The PB1 domai 23.0 1.2E+02 0.0026 20.4 3.1 26 59-84 13-38 (81)
114 PRK02576 psbZ photosystem II r 22.6 65 0.0014 20.6 1.6 37 1-38 1-41 (62)
115 COG5446 Predicted integral mem 21.9 94 0.002 24.5 2.7 49 5-63 110-160 (233)
116 PRK09333 30S ribosomal protein 21.8 3.6E+02 0.0077 20.4 7.0 89 68-178 7-111 (150)
117 PRK04125 murein hydrolase regu 21.8 60 0.0013 24.2 1.6 27 1-27 7-38 (141)
118 PRK08217 fabG 3-ketoacyl-(acyl 21.7 1.2E+02 0.0025 23.4 3.3 31 36-66 221-251 (253)
119 PRK12828 short chain dehydroge 21.4 1E+02 0.0022 23.5 3.0 33 36-68 204-238 (239)
120 PHA00663 hypothetical protein 21.2 42 0.0009 21.3 0.5 25 56-82 17-41 (68)
121 PRK08063 enoyl-(acyl carrier p 21.2 1E+02 0.0023 23.8 3.0 33 35-67 213-247 (250)
122 PF06755 DUF1219: Protein of u 21.0 1.8E+02 0.0038 20.9 3.7 17 107-123 60-76 (114)
123 PRK12826 3-ketoacyl-(acyl-carr 20.2 1.3E+02 0.0028 23.1 3.4 33 35-67 214-248 (251)
124 PRK07523 gluconate 5-dehydroge 20.1 1.3E+02 0.0028 23.4 3.4 35 35-69 218-254 (255)
No 1
>PLN00016 RNA-binding protein; Provisional
Probab=99.13 E-value=2.3e-10 Score=97.80 Aligned_cols=125 Identities=13% Similarity=0.116 Sum_probs=94.1
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
.|.|+++||+-..++ ++++++.+|++++.++.++...|+.|||++++.+|+.++...|++.+|.+.... .
T Consensus 230 ~~~~i~~~g~g~~~~---~~i~v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~-------~ 299 (378)
T PLN00016 230 RGRPVPIPGSGIQLT---QLGHVKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIV-------H 299 (378)
T ss_pred cCCceeecCCCCeee---ceecHHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCcee-------e
Confidence 477888888766555 889999999999999998877789999999999999999999999999875321 1
Q ss_pred CCHHHHHhccHHHHHHHHHHhCCC-CCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 97 VRLEEIMKGKESVWEEIVRENQLQ-PTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~gL~-~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
++.... . + +.+ ..++ . ..+...|++|+++. ||+|.++..|++.++++||++
T Consensus 300 ~~~~~~-~-----~-------~~~~~~p~-------------~-~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~ 352 (378)
T PLN00016 300 YDPKAV-G-----F-------GAKKAFPF-------------R-DQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFG 352 (378)
T ss_pred cCcccc-C-----c-------cccccccc-------------c-ccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 111000 0 0 000 0010 1 01455799999987 999999999999999999998
Q ss_pred CCCC
Q 030297 175 HRIV 178 (179)
Q Consensus 175 ~~~i 178 (179)
.+-+
T Consensus 353 ~~~~ 356 (378)
T PLN00016 353 RGRD 356 (378)
T ss_pred cCCC
Confidence 8754
No 2
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=99.03 E-value=8.8e-10 Score=92.88 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=88.7
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
.|.|++++|+..+++ ++++++.+|++++.++..+ ..|+.|||++|+.+|+.++...|++.+|......+ .+
T Consensus 210 ~~~~~~~~g~g~~~~---~~i~v~D~a~a~~~~~~~~-~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~-----~~ 280 (355)
T PRK10217 210 AGKPLPVYGNGQQIR---DWLYVEDHARALYCVATTG-KVGETYNIGGHNERKNLDVVETICELLEELAPNKP-----QG 280 (355)
T ss_pred cCCCceEeCCCCeee---CcCcHHHHHHHHHHHHhcC-CCCCeEEeCCCCcccHHHHHHHHHHHhcccccccc-----cc
Confidence 467888768777677 9999999999999998874 35789999999999999999999999996432211 11
Q ss_pred CCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 97 VRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
+.. ... . + .+ ....+ . .. ...+|.+|+++. ||+|.++..|++.++++++++
T Consensus 281 ~~~---~~~----~--~--~~-~~~~~--------------~-~~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~ 333 (355)
T PRK10217 281 VAH---YRD----L--I--TF-VADRP--------------G-HDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLA 333 (355)
T ss_pred ccc---ccc----c--c--ee-cCCCC--------------C-CCcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHh
Confidence 110 000 0 0 00 00000 0 01 456799999876 999999999999999999876
Q ss_pred C
Q 030297 175 H 175 (179)
Q Consensus 175 ~ 175 (179)
.
T Consensus 334 ~ 334 (355)
T PRK10217 334 N 334 (355)
T ss_pred C
Confidence 5
No 3
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.94 E-value=5e-09 Score=88.62 Aligned_cols=119 Identities=11% Similarity=0.159 Sum_probs=86.5
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCC--CCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDP--NARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGS 94 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p--~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~ 94 (179)
.|.|++..|+-.+.+ ++++++.+|+++++++..+ ...|++|||++|+.+|+.++...|++.++....... .
T Consensus 219 ~~~~i~~~g~g~~~r---d~i~v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~---~- 291 (348)
T PRK15181 219 KDEPIYINGDGSTSR---DFCYIENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQS---R- 291 (348)
T ss_pred cCCCcEEeCCCCceE---eeEEHHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCccccccc---C-
Confidence 467777667766667 9999999999999887653 246799999999999999999999999885422110 0
Q ss_pred ccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHH
Q 030297 95 ERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLK 173 (179)
Q Consensus 95 ~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~ 173 (179)
..+. + .+.. +.... ...+|++|+++. ||+|.++..|+++++++|++
T Consensus 292 ~~~~------------------~----~~~~--------~~~~~---~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~ 338 (348)
T PRK15181 292 AEPI------------------Y----KDFR--------DGDVK---HSQADITKIKTFLSYEPEFDIKEGLKQTLKWYI 338 (348)
T ss_pred CCcc------------------c----CCCC--------CCccc---ccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0 0000 00011 456799999986 99999999999999999997
Q ss_pred hC
Q 030297 174 SH 175 (179)
Q Consensus 174 ~~ 175 (179)
..
T Consensus 339 ~~ 340 (348)
T PRK15181 339 DK 340 (348)
T ss_pred Hh
Confidence 64
No 4
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=98.92 E-value=1.5e-08 Score=83.23 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=84.5
Q ss_pred HhCCCccC-CCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCC
Q 030297 16 HEGFPLLF-PGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGS 94 (179)
Q Consensus 16 ~~g~pl~F-PG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~ 94 (179)
..|.|+.+ +|+....+ +.++++.+|+++++++..+. .++.|||++|+.+|+.++...|++.+|.+.....
T Consensus 187 ~~~~~~~~~~~~g~~~~---~~i~v~Dv~~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~----- 257 (306)
T PLN02725 187 ANGAPEVVVWGSGSPLR---EFLHVDDLADAVVFLMRRYS-GAEHVNVGSGDEVTIKELAELVKEVVGFEGELVW----- 257 (306)
T ss_pred hcCCCeEEEcCCCCeee---ccccHHHHHHHHHHHHhccc-cCcceEeCCCCcccHHHHHHHHHHHhCCCCceee-----
Confidence 45777664 57665556 89999999999999998754 3567999999999999999999999986532210
Q ss_pred ccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHh
Q 030297 95 ERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 95 ~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
.+.. +. + .. ...+|.+|+|+.||+|.++..+++.++++++++
T Consensus 258 ~~~~----------------------~~-----------~--~~---~~~~d~~k~~~lg~~p~~~~~~~l~~~~~~~~~ 299 (306)
T PLN02725 258 DTSK----------------------PD-----------G--TP---RKLMDSSKLRSLGWDPKFSLKDGLQETYKWYLE 299 (306)
T ss_pred cCCC----------------------CC-----------c--cc---ccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 0000 00 0 01 445799999988999999999999999998875
No 5
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=98.91 E-value=1.6e-08 Score=85.16 Aligned_cols=120 Identities=11% Similarity=0.072 Sum_probs=86.7
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
.|.++++.|+..+.+ ++++++.+|++++.++..+ ..++.|||++++.+|+.++...|++.+|...+.. .+
T Consensus 217 ~~~~~~~~~~g~~~~---~~v~v~D~a~a~~~~l~~~-~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~------~~ 286 (352)
T PRK10084 217 EGKPLPIYGKGDQIR---DWLYVEDHARALYKVVTEG-KAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKA------TS 286 (352)
T ss_pred cCCCeEEeCCCCeEE---eeEEHHHHHHHHHHHHhcC-CCCceEEeCCCCcCcHHHHHHHHHHHhccccccc------cc
Confidence 366777667766566 8999999999999888764 3589999999999999999999999999642111 11
Q ss_pred CCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHhC
Q 030297 97 VRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKSH 175 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~~ 175 (179)
+.. .+. + +...+ .. .. ...+|.+|+++. ||+|.++..+++.++++++++.
T Consensus 287 ~~~--~~~------------~-~~~~~-~~----------~~---~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~ 337 (352)
T PRK10084 287 YRE--QIT------------Y-VADRP-GH----------DR---RYAIDASKISRELGWKPQETFESGIRKTVEWYLAN 337 (352)
T ss_pred hhh--hcc------------c-cccCC-CC----------Cc---eeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhC
Confidence 100 000 0 00000 00 01 456899999985 9999999999999999998864
No 6
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.91 E-value=1.3e-08 Score=85.37 Aligned_cols=112 Identities=7% Similarity=0.027 Sum_probs=81.8
Q ss_pred CCCcc-CCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 18 GFPLL-FPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 18 g~pl~-FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
|.+.+ ++|+-...+ ++++++.+|++++.++.++. ++.|||++|+.+|+.++...|++.+|.+.... ..
T Consensus 216 ~~~~~~~~g~g~~~r---d~i~v~D~a~a~~~~~~~~~--~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~------~~ 284 (340)
T PLN02653 216 GLQKKLFLGNLDASR---DWGFAGDYVEAMWLMLQQEK--PDDYVVATEESHTVEEFLEEAFGYVGLNWKDH------VE 284 (340)
T ss_pred CCCCceEeCCCccee---cceeHHHHHHHHHHHHhcCC--CCcEEecCCCceeHHHHHHHHHHHcCCCCCcc------ee
Confidence 54444 347666666 99999999999999998753 57899999999999999999999999752211 11
Q ss_pred CCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHH
Q 030297 97 VRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLK 173 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~ 173 (179)
+.. .+... .. .. ....|.+|+++. ||+|.++..+++++++++++
T Consensus 285 ~~~----------------------~~~~~-------~~-~~---~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~ 329 (340)
T PLN02653 285 IDP----------------------RYFRP-------AE-VD---NLKGDASKAREVLGWKPKVGFEQLVKMMVDEDL 329 (340)
T ss_pred eCc----------------------ccCCc-------cc-cc---cccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 000 00000 00 01 445699999987 99999999999999999765
No 7
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.90 E-value=2.6e-08 Score=82.39 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=85.2
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l 113 (179)
.+.++++.+|++++.++.++. .|+.||++ |+.+|+.+++..|++.+|.+..... .|..+...+....+.+.++
T Consensus 202 ~~~i~v~D~a~a~~~~~~~~~-~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 274 (328)
T TIGR03466 202 LNLVHVDDVAEGHLLALERGR-IGERYILG-GENLTLKQILDKLAEITGRPAPRVK-----LPRWLLLPVAWGAEALARL 274 (328)
T ss_pred cceEEHHHHHHHHHHHHhCCC-CCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCc-----CCHHHHHHHHHHHHHHHHh
Confidence 367899999999999988754 68889986 7889999999999999998654322 3433322222112223222
Q ss_pred HHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHhCCCC
Q 030297 114 VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 114 ~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~~~~i 178 (179)
.+. .+...... ++.... +..+|.+|+++. ||+|. +..+++.++++||++.|.+
T Consensus 275 ---~~~--~~~~~~~~---~~~~~~---~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~~~~ 328 (328)
T TIGR03466 275 ---TGK--EPRVTVDG---VRMAKK---KMFFSSAKAVRELGYRQR-PAREALRDAVEWFRANGYL 328 (328)
T ss_pred ---cCC--CCCCCHHH---HHHHhc---cCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHhCCC
Confidence 121 22211000 111112 778999999887 99995 9999999999999987753
No 8
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.89 E-value=6.9e-09 Score=88.32 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=96.5
Q ss_pred CChhhhccccccCCHHHHHHHHHHHhc-----CCCCCCCceeccCCCcccHHHHHHHHHHHhcCccC-CCCCCCCCccCC
Q 030297 25 GTKETWEGFSEYSDADLIAEQEIWAAV-----DPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENY-GFGDEKGSERVR 98 (179)
Q Consensus 25 G~~~~~~~~~~~~~~~~la~~~i~a~~-----~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~-~p~~~~~~~~~~ 98 (179)
|...+|. +.++++|+|.+++.|.. .+.++||.|+|+||+++..-++|..|.+.||.... ... .|..
T Consensus 209 g~~~~~~---~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~-----~p~~ 280 (361)
T KOG1430|consen 209 GDGENLN---DFTYGENVAWAHILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIK-----LPLF 280 (361)
T ss_pred ecccccc---ceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceee-----cchH
Confidence 4445555 99999999999999865 57788999999999998888888899999998876 332 6666
Q ss_pred HHHHHhccHHHHHHHHHHh-CCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHhCC
Q 030297 99 LEEIMKGKESVWEEIVREN-QLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKSHR 176 (179)
Q Consensus 99 l~~~~~~~~~~w~~l~~~~-gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~~~ 176 (179)
+..++.- +.+++.+. +-..+.+.. ... +.+.. ...+|..||++. ||+|.++..+++.+++.+++..+
T Consensus 281 l~~~~~~----l~e~~~~~l~p~~p~lt~-~~v---~~~~~---~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~ 349 (361)
T KOG1430|consen 281 LSYFLAY----LLEIVYFLLRPYQPILTR-FRV---ALLGV---TRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASES 349 (361)
T ss_pred HHHHHHH----HHHHHHHhccCCCCCcCh-hhe---eeecc---ccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhh
Confidence 6555543 33444333 222333332 111 11112 788999999877 99999999999999998887653
No 9
>PLN02427 UDP-apiose/xylose synthase
Probab=98.85 E-value=2e-08 Score=85.95 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=85.8
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCC-CCCCceeccCC-CcccHHHHHHHHHHHhcCccCCCCCCCCC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPN-ARNEAFNCTNG-DVFKWKHLWKVLAEQFEIENYGFGDEKGS 94 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~-a~geaFNi~dg-~~~sw~~lw~~iA~~fG~~~~~p~~~~~~ 94 (179)
.|.|++..|+....+ ++++++.+|++++.++.++. ..|+.|||+++ +.+|+.++...|++.+|.....+.. ..
T Consensus 243 ~~~~~~~~g~g~~~r---~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~-~~- 317 (386)
T PLN02427 243 RREPLKLVDGGQSQR---TFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPAL-EE- 317 (386)
T ss_pred cCCCeEEECCCCceE---CcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccc-cc-
Confidence 477777656654444 89999999999999998875 46789999997 5899999999999999953222200 00
Q ss_pred ccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHH
Q 030297 95 ERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLK 173 (179)
Q Consensus 95 ~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~ 173 (179)
..+++ ... ++.. ..+ .|. . ....|++|+|+. ||+|.++..++++++++|++
T Consensus 318 ~~~~~----~~~----------------~~~~-~~~--~~~--~---~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~ 369 (386)
T PLN02427 318 PTVDV----SSK----------------EFYG-EGY--DDS--D---KRIPDMTIINKQLGWNPKTSLWDLLESTLTYQH 369 (386)
T ss_pred ccccc----Ccc----------------cccC-ccc--cch--h---hccCCHHHHHHhcCCCcCccHHHHHHHHHHHHH
Confidence 00000 000 0000 000 010 1 456799999986 99999999999999999986
Q ss_pred h
Q 030297 174 S 174 (179)
Q Consensus 174 ~ 174 (179)
+
T Consensus 370 ~ 370 (386)
T PLN02427 370 K 370 (386)
T ss_pred H
Confidence 5
No 10
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.79 E-value=5.8e-08 Score=81.68 Aligned_cols=124 Identities=10% Similarity=0.013 Sum_probs=80.2
Q ss_pred CCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHH
Q 030297 24 PGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIM 103 (179)
Q Consensus 24 PG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~ 103 (179)
.|+-...+ ++++++.+|++++.++.++. ++.|||++|+.+|+.++...|++.+|.+...-. .++....+.
T Consensus 217 ~g~g~~~r---d~i~V~D~a~a~~~~~~~~~--~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~-----~~~~~~~~~ 286 (343)
T TIGR01472 217 LGNLDAKR---DWGHAKDYVEAMWLMLQQDK--PDDYVIATGETHSVREFVEVSFEYIGKTLNWKD-----KGINEVGRC 286 (343)
T ss_pred eCCCcccc---CceeHHHHHHHHHHHHhcCC--CccEEecCCCceeHHHHHHHHHHHcCCCccccc-----ccccccccc
Confidence 37666556 99999999999999998764 458999999999999999999999997542110 000000000
Q ss_pred hccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 104 KGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 104 ~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
.... .. + -.. .+.+... .| . ..+..|++|+++. ||+|.++..|+++++++.+++
T Consensus 287 ~~~~-~~--~-~~~--~~~~~~~------~~--~---~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 287 KETG-KV--H-VEI--DPRYFRP------TE--V---DLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred cccC-ce--e-EEe--CccccCC------Cc--c---chhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 0000 00 0 000 0000000 00 0 1345699999987 999999999999999998874
No 11
>PLN02240 UDP-glucose 4-epimerase
Probab=98.77 E-value=5.1e-08 Score=81.90 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=76.6
Q ss_pred ccCCHHHHHHHHHHHhcC----CCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHH
Q 030297 35 EYSDADLIAEQEIWAAVD----PNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVW 110 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~----p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w 110 (179)
++++++.+|++++.++.+ +...++.|||++|+.+|+.++...|++.+|.+..... .+..
T Consensus 239 ~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~-----~~~~------------ 301 (352)
T PLN02240 239 DYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKL-----APRR------------ 301 (352)
T ss_pred eeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCcee-----CCCC------------
Confidence 899999999999998864 3345699999999999999999999999996532210 1100
Q ss_pred HHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHhCC
Q 030297 111 EEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKSHR 176 (179)
Q Consensus 111 ~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~~~ 176 (179)
+ . + .. ....|++|+++. ||+|.++..++++++++|+++.+
T Consensus 302 ------------~-~--------~--~~---~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~ 342 (352)
T PLN02240 302 ------------P-G--------D--AE---EVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNP 342 (352)
T ss_pred ------------C-C--------C--hh---hhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 0 0 0 01 344689999987 99999999999999999998764
No 12
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.77 E-value=2.8e-08 Score=87.06 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=84.0
Q ss_pred CCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccC
Q 030297 18 GFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERV 97 (179)
Q Consensus 18 g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~ 97 (179)
+.|+..+|+-..++ ++++++.+|++++.++.++ .++.|||++|+.+|+.++...|++.+|.+..... .|.
T Consensus 315 ~~~i~i~g~G~~~r---dfi~V~Dva~ai~~a~e~~--~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~-----~p~ 384 (442)
T PLN02206 315 KEPLTVYGDGKQTR---SFQFVSDLVEGLMRLMEGE--HVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEF-----RPN 384 (442)
T ss_pred CCCcEEeCCCCEEE---eEEeHHHHHHHHHHHHhcC--CCceEEEcCCCceeHHHHHHHHHHHhCCCCceee-----CCC
Confidence 66777667766666 8899999999999998764 3568999999999999999999999985432110 110
Q ss_pred CHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHhC
Q 030297 98 RLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKSH 175 (179)
Q Consensus 98 ~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~~ 175 (179)
.. . + .. ...+|.+|+++. ||+|.++..|++.++++++++.
T Consensus 385 ~~--------------------------~-------~--~~---~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~~ 425 (442)
T PLN02206 385 TE--------------------------D-------D--PH---KRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQR 425 (442)
T ss_pred CC--------------------------C-------C--cc---ccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 00 0 0 00 345699999987 9999999999999999999763
No 13
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=98.77 E-value=3.7e-08 Score=81.46 Aligned_cols=107 Identities=13% Similarity=0.162 Sum_probs=78.2
Q ss_pred cCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHH
Q 030297 22 LFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEE 101 (179)
Q Consensus 22 ~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~ 101 (179)
.|+|+....+ ++++++.+|+++++++.++ .+++|||++|...|+.++...|++.+|... ... .. .|..+
T Consensus 200 i~~g~~~~~r---~~i~v~D~a~a~~~~~~~~--~~~~yni~~~~~~s~~el~~~i~~~~~~~~-~~~--~~-~~~~~-- 268 (308)
T PRK11150 200 LFEGSENFKR---DFVYVGDVAAVNLWFWENG--VSGIFNCGTGRAESFQAVADAVLAYHKKGE-IEY--IP-FPDKL-- 268 (308)
T ss_pred EecCCCceee---eeeeHHHHHHHHHHHHhcC--CCCeEEcCCCCceeHHHHHHHHHHHhCCCc-cee--cc-Ccccc--
Confidence 4656655455 8999999999999998864 357999999999999999999999998531 110 00 11000
Q ss_pred HHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCc-cchHHHHHHHHHHHH
Q 030297 102 IMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGF-RNSKNSFVAWIGRLK 173 (179)
Q Consensus 102 ~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~-~dt~e~~~~~~~~~~ 173 (179)
. +.... ....|.+|+|+.||+|+ .+..++++++++|+.
T Consensus 269 --~-----------------------------~~~~~---~~~~d~~k~~~~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 269 --K-----------------------------GRYQA---FTQADLTKLRAAGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred --c-----------------------------cccce---ecccCHHHHHhcCCCCCCCCHHHHHHHHHHHhh
Confidence 0 00001 45679999999999997 499999999999874
No 14
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.76 E-value=3.8e-08 Score=90.15 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=88.6
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCC--CCCCceeccCCC-cccHHHHHHHHHHHhcCccCCCCCCCC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGD-VFKWKHLWKVLAEQFEIENYGFGDEKG 93 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~-~~sw~~lw~~iA~~fG~~~~~p~~~~~ 93 (179)
.|.|+..+|+-.+.+ ++++++.+|++++.++.++. +.|++|||++|+ .+|+.++...|++.+|.+.....
T Consensus 521 ~~~~i~~~g~g~~~r---d~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~---- 593 (660)
T PRK08125 521 EGSPIKLVDGGKQKR---CFTDIRDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDH---- 593 (660)
T ss_pred CCCCeEEeCCCceee---ceeeHHHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCccccc----
Confidence 367777767766566 99999999999999998753 458999999986 79999999999999996422111
Q ss_pred CccCCHHHHHhcc-HHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHH
Q 030297 94 SERVRLEEIMKGK-ESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGR 171 (179)
Q Consensus 94 ~~~~~l~~~~~~~-~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~ 171 (179)
.|... ..... ...+ + ............|++|+|+. ||+|.++.+|++++++++
T Consensus 594 -~~~~~--~~~~~~~~~~-------------------~---~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~ 648 (660)
T PRK08125 594 -FPPFA--GFRVVESSSY-------------------Y---GKGYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDF 648 (660)
T ss_pred -CCccc--cccccccccc-------------------c---ccccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 11100 00000 0000 0 00001001456799999987 999999999999999999
Q ss_pred HHhCC
Q 030297 172 LKSHR 176 (179)
Q Consensus 172 ~~~~~ 176 (179)
+++..
T Consensus 649 ~~~~~ 653 (660)
T PRK08125 649 FLRTV 653 (660)
T ss_pred HHhcc
Confidence 98753
No 15
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.75 E-value=6.6e-08 Score=81.46 Aligned_cols=128 Identities=10% Similarity=0.100 Sum_probs=86.1
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCC--CCCCceeccCC-CcccHHHHHHHHHHHhcCccCCCCCCCC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPN--ARNEAFNCTNG-DVFKWKHLWKVLAEQFEIENYGFGDEKG 93 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg-~~~sw~~lw~~iA~~fG~~~~~p~~~~~ 93 (179)
.|.|+.+.|.-...+ ++++++.+|++++.++.++. +.|++|||+++ ..+|+.++...|++.+|....... ..
T Consensus 207 ~~~~~~~~~~g~~~r---~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~--~~ 281 (347)
T PRK11908 207 RGEPISLVDGGSQKR---AFTDIDDGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAE--SA 281 (347)
T ss_pred CCCceEEecCCceee---ccccHHHHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccc--cc
Confidence 467777656545456 89999999999999998864 56899999986 579999999999999996532210 00
Q ss_pred CccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHH
Q 030297 94 SERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRL 172 (179)
Q Consensus 94 ~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~ 172 (179)
.+..+ .....+.. ++ . . ..... +...|++|+++. ||+|.++..+++.++++|+
T Consensus 282 -~~~~~---~~~~~~~~------~~-------~--~----~~~~~---~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~ 335 (347)
T PRK11908 282 -KKVKL---VETTSGAY------YG-------K--G----YQDVQ---NRVPKIDNTMQELGWAPKTTMDDALRRIFEAY 335 (347)
T ss_pred -ccccc---ccCCchhc------cC-------c--C----cchhc---cccCChHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 00000 00000000 00 0 0 00011 455689999987 9999999999999999988
Q ss_pred HhC
Q 030297 173 KSH 175 (179)
Q Consensus 173 ~~~ 175 (179)
++.
T Consensus 336 ~~~ 338 (347)
T PRK11908 336 RGH 338 (347)
T ss_pred HHH
Confidence 753
No 16
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.74 E-value=4.3e-08 Score=85.80 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=84.0
Q ss_pred CCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccC
Q 030297 18 GFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERV 97 (179)
Q Consensus 18 g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~ 97 (179)
|.++...|+-..++ ++++++.+|++++.++..+ .+++|||++|+.+|+.++...|++.+|.+...-. .|.
T Consensus 316 ~~~i~v~g~g~~~r---dfi~V~Dva~ai~~~~~~~--~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~-----~p~ 385 (436)
T PLN02166 316 KQPMTVYGDGKQTR---SFQYVSDLVDGLVALMEGE--HVGPFNLGNPGEFTMLELAEVVKETIDSSATIEF-----KPN 385 (436)
T ss_pred CCCcEEeCCCCeEE---eeEEHHHHHHHHHHHHhcC--CCceEEeCCCCcEeHHHHHHHHHHHhCCCCCeee-----CCC
Confidence 66776668766667 8999999999999998754 3569999999999999999999999986532110 110
Q ss_pred CHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 98 RLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 98 ~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
. + . + .. ....|++|+|+. ||+|.++..+++.++++++++
T Consensus 386 ~----------------------~---~--------~--~~---~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~ 425 (436)
T PLN02166 386 T----------------------A---D--------D--PH---KRKPDISKAKELLNWEPKISLREGLPLMVSDFRN 425 (436)
T ss_pred C----------------------C---C--------C--cc---ccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 0 0 0 0 01 456799999997 999999999999999999875
No 17
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.73 E-value=6.7e-08 Score=80.50 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=75.9
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
++++++.+|+++++++.++.+ ++.||+ +|+.+|+.++...|++.+|.... +. .+...
T Consensus 226 ~~i~v~Dva~a~~~~l~~~~~-~~~~ni-~~~~~s~~ei~~~i~~~~~~~~~-~~-----~~~~~--------------- 282 (325)
T PLN02989 226 RFVDVRDVALAHVKALETPSA-NGRYII-DGPVVTIKDIENVLREFFPDLCI-AD-----RNEDI--------------- 282 (325)
T ss_pred CeeEHHHHHHHHHHHhcCccc-CceEEE-ecCCCCHHHHHHHHHHHCCCCCC-CC-----CCCCc---------------
Confidence 688999999999999988764 558999 57789999999999999973211 10 00000
Q ss_pred HHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCC
Q 030297 115 RENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 115 ~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~i 178 (179)
. + . .. ....|.+|+|++||+|.++.+|+++++++++++.|+.
T Consensus 283 ----------~--------~---~-~~~~~~~~~~k~~~lg~~p~~~l~~gi~~~~~~~~~~~~~ 325 (325)
T PLN02989 283 ----------T--------E---L-NSVTFNVCLDKVKSLGIIEFTPTETSLRDTVLSLKEKCLV 325 (325)
T ss_pred ----------c--------c---c-cccCcCCCHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 0 0 0 01 5677999999999999999999999999999988753
No 18
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.72 E-value=5.7e-08 Score=88.90 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=87.7
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
.|.+++.+|+-.+.+ +.++++.+|+++..++..+ ..+++|||++++.+|+.++...|++.+|.+.... ..
T Consensus 209 ~g~~i~i~g~g~~~r---~~ihV~Dva~a~~~~l~~~-~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~------i~ 278 (668)
T PLN02260 209 QGKPLPIHGDGSNVR---SYLYCEDVAEAFEVVLHKG-EVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS------IK 278 (668)
T ss_pred CCCCeEEecCCCceE---eeEEHHHHHHHHHHHHhcC-CCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcce------ee
Confidence 467888778766566 8999999999999887654 4578999999999999999999999999753211 00
Q ss_pred CCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCC
Q 030297 97 VRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHR 176 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~ 176 (179)
. . ...++. + . ...+|.+|++++||++.++..|+++++++||++.+
T Consensus 279 ~-----~----------------~~~p~~--------~---~---~~~~d~~k~~~lGw~p~~~~~egl~~~i~w~~~~~ 323 (668)
T PLN02260 279 F-----V----------------ENRPFN--------D---Q---RYFLDDQKLKKLGWQERTSWEEGLKKTMEWYTSNP 323 (668)
T ss_pred e-----c----------------CCCCCC--------c---c---eeecCHHHHHHcCCCCCCCHHHHHHHHHHHHHhCh
Confidence 0 0 000110 0 1 45679999998899999999999999999998653
No 19
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.72 E-value=6.6e-08 Score=79.39 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=84.7
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
.|.+++.+|+..+.+ +.++++.+|+++..++.++ ..|+.||+++++.+|+.++-..|++.+|.+..... . .+
T Consensus 200 ~~~~~~~~~~g~~~~---~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~---~-~~ 271 (317)
T TIGR01181 200 AGKPLPVYGDGQQVR---DWLYVEDHCRAIYLVLEKG-RVGETYNIGGGNERTNLEVVETILELLGKDEDLIT---H-VE 271 (317)
T ss_pred cCCCceEeCCCceEE---eeEEHHHHHHHHHHHHcCC-CCCceEEeCCCCceeHHHHHHHHHHHhCCCccccc---c-cC
Confidence 366777667666555 8899999999999988764 45789999999999999999999999996422110 0 00
Q ss_pred CCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHhC
Q 030297 97 VRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKSH 175 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~~ 175 (179)
.. + .. + . ...+|.+|+++. ||+|.++..+++.+++++|++.
T Consensus 272 ~~------------------------~-~~-------~---~---~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~ 313 (317)
T TIGR01181 272 DR------------------------P-GH-------D---R---RYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDN 313 (317)
T ss_pred CC------------------------c-cc-------h---h---hhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhc
Confidence 00 0 00 0 1 335689999875 9999999999999999999765
Q ss_pred C
Q 030297 176 R 176 (179)
Q Consensus 176 ~ 176 (179)
+
T Consensus 314 ~ 314 (317)
T TIGR01181 314 E 314 (317)
T ss_pred c
Confidence 3
No 20
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=98.70 E-value=8.1e-08 Score=80.24 Aligned_cols=98 Identities=10% Similarity=-0.020 Sum_probs=76.3
Q ss_pred cccCCHHHHHHHHHHHhcC--CCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVD--PNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWE 111 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~--p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~ 111 (179)
.++++++.+|++++.|+++ +...+++|||++|+.+|+.++...|++.+|.+..... .|...
T Consensus 231 ~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~-----~~~~~------------ 293 (338)
T PRK10675 231 RDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHF-----APRRE------------ 293 (338)
T ss_pred EeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeee-----CCCCC------------
Confidence 3899999999999999885 2344689999999999999999999999997643210 11000
Q ss_pred HHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 112 EIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 112 ~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
. + .. ...+|.+|+++. ||+|.++..++++++++|+++
T Consensus 294 ----------~-----------~--~~---~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~ 331 (338)
T PRK10675 294 ----------G-----------D--LP---AYWADASKADRELNWRVTRTLDEMAQDTWHWQSR 331 (338)
T ss_pred ----------C-----------c--hh---hhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHh
Confidence 0 0 01 334699999877 999999999999999999876
No 21
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.69 E-value=9.2e-08 Score=81.78 Aligned_cols=108 Identities=10% Similarity=-0.043 Sum_probs=82.7
Q ss_pred CCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccC
Q 030297 18 GFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERV 97 (179)
Q Consensus 18 g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~ 97 (179)
+.+++++|+-...+ ++++++.+++++++++..+ .+++|||++|+.+|+.++...|++.+|.+..... .|.
T Consensus 223 ~~~i~~~g~g~~~r---~~i~v~D~a~ai~~~~~~~--~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~-----~~~ 292 (370)
T PLN02695 223 TDEFEMWGDGKQTR---SFTFIDECVEGVLRLTKSD--FREPVNIGSDEMVSMNEMAEIALSFENKKLPIKH-----IPG 292 (370)
T ss_pred CCCeEEeCCCCeEE---eEEeHHHHHHHHHHHHhcc--CCCceEecCCCceeHHHHHHHHHHHhCCCCCcee-----cCC
Confidence 46777777766556 8999999999999987764 3689999999999999999999999986432110 110
Q ss_pred CHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 98 RLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 98 ~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
. +. .. ....|++|+++. ||+|.++..+++.++++++++
T Consensus 293 ~-----------------------------------~~-~~---~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~ 331 (370)
T PLN02695 293 P-----------------------------------EG-VR---GRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKE 331 (370)
T ss_pred C-----------------------------------CC-cc---ccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 0 00 00 234699999987 999999999999999998865
No 22
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=98.68 E-value=9.1e-08 Score=78.85 Aligned_cols=99 Identities=8% Similarity=0.054 Sum_probs=75.8
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l 113 (179)
.+.++++.+|+++..++.. ..+++|||++++++|+.++...|++.+|.+..... .|.+- +
T Consensus 214 ~~~i~v~D~a~~i~~~~~~--~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~-----~~~~~----------~--- 273 (314)
T TIGR02197 214 RDFVYVKDVVDVNLWLLEN--GVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEY-----IPMPE----------A--- 273 (314)
T ss_pred eeeEEHHHHHHHHHHHHhc--ccCceEEcCCCCCccHHHHHHHHHHHhCCCCccee-----ccCcc----------c---
Confidence 3899999999999999887 45679999999999999999999999997642110 11110 0
Q ss_pred HHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHH
Q 030297 114 VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLK 173 (179)
Q Consensus 114 ~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~ 173 (179)
+. .. +. ....+|.+|+|+. ||+|..+..++++++++|++
T Consensus 274 ---------~~---------~~-~~--~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 274 ---------LR---------GK-YQ--YFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred ---------cc---------cc-cc--cccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 00 00 00 1456799999988 99999999999999999975
No 23
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=98.64 E-value=1.2e-07 Score=77.40 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=79.6
Q ss_pred CCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccC
Q 030297 18 GFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERV 97 (179)
Q Consensus 18 g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~ 97 (179)
+.+++..|. .+. +.++++.+|++++.++..+.+.++.|||++++.+|+.+++..|++.+|.+....+ .|.
T Consensus 170 ~~~~~~~~~--~~~---~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~-----~~~ 239 (287)
T TIGR01214 170 GEELRVVDD--QIG---SPTYAKDLARVIAALLQRLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLH-----PQE 239 (287)
T ss_pred CCCceEecC--CCc---CCcCHHHHHHHHHHHHhhccCCCCeEEEECCCCcCHHHHHHHHHHHhCccccccc-----Cce
Confidence 456665453 344 7889999999999999987778899999999999999999999999998764321 110
Q ss_pred CHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc-CCCCccchHHHHHHHHH
Q 030297 98 RLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH-GFLGFRNSKNSFVAWIG 170 (179)
Q Consensus 98 ~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~ 170 (179)
+ .... ...+ . .+. . .. ...+|.+|+|+. || +..+..+++.++++
T Consensus 240 -~-~~~~--~~~~---------~-~~~-------------~-~~~~~~~d~~~~~~~lg~-~~~~~~~~l~~~~~ 285 (287)
T TIGR01214 240 -V-KPIS--SKEY---------P-RPA-------------R-RPAYSVLDNTKLVKTLGT-PLPHWREALRAYLQ 285 (287)
T ss_pred -e-Eeec--HHHc---------C-CCC-------------C-CCCccccchHHHHHHcCC-CCccHHHHHHHHHh
Confidence 0 0000 0000 0 000 0 11 567899999997 99 66798999988765
No 24
>PLN02214 cinnamoyl-CoA reductase
Probab=98.63 E-value=3e-07 Score=77.65 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=75.5
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
++++++.+|++++.|+.++.+ ++.|||++ +..|+.++...|++.++-. . .|.... .
T Consensus 224 ~~i~V~Dva~a~~~al~~~~~-~g~yn~~~-~~~~~~el~~~i~~~~~~~-~--------~~~~~~---~---------- 279 (342)
T PLN02214 224 AYVDVRDVALAHVLVYEAPSA-SGRYLLAE-SARHRGEVVEILAKLFPEY-P--------LPTKCK---D---------- 279 (342)
T ss_pred CeeEHHHHHHHHHHHHhCccc-CCcEEEec-CCCCHHHHHHHHHHHCCCC-C--------CCCCCc---c----------
Confidence 789999999999999998765 45799997 4689999999999998521 1 111110 0
Q ss_pred HHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCCC
Q 030297 115 RENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 115 ~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~iP 179 (179)
+ . .+ + .. ...+|.+|++++||++ .+.+|+++++++||++.++||
T Consensus 280 ---~-~-~~----------~--~~---~~~~d~~k~~~LG~~p-~~lee~i~~~~~~~~~~~~~~ 323 (342)
T PLN02214 280 ---E-K-NP----------R--AK---PYKFTNQKIKDLGLEF-TSTKQSLYDTVKSLQEKGHLA 323 (342)
T ss_pred ---c-c-CC----------C--CC---ccccCcHHHHHcCCcc-cCHHHHHHHHHHHHHHcCCCC
Confidence 0 0 00 0 01 3457999999889998 699999999999999999986
No 25
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.56 E-value=3.2e-07 Score=77.40 Aligned_cols=114 Identities=8% Similarity=-0.037 Sum_probs=80.8
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcC----CCCCCCceeccCC--CcccHHHHHHHHHHHhcCccCCCCC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVD----PNARNEAFNCTNG--DVFKWKHLWKVLAEQFEIENYGFGD 90 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~----p~a~geaFNi~dg--~~~sw~~lw~~iA~~fG~~~~~p~~ 90 (179)
.|.+++++ +...++ ++++++.+|++++.++.. +...+++|||+.| +..|..++...|++.++.......
T Consensus 210 ~g~~~~~~-~g~~~r---d~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~- 284 (349)
T TIGR02622 210 SNKIVIIR-NPDATR---PWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWE- 284 (349)
T ss_pred cCCCeEEC-CCCccc---ceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCcee-
Confidence 47787774 345556 889999999999988763 2344789999964 789999999999998873211110
Q ss_pred CCCCccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHH
Q 030297 91 EKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWI 169 (179)
Q Consensus 91 ~~~~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~ 169 (179)
.+.. +.. ..... ...+|++|+++. ||+|.++..+++++++
T Consensus 285 ----~~~~------------------------~~~--------~~~~~---~~~~d~~k~~~~lgw~p~~~l~~gi~~~i 325 (349)
T TIGR02622 285 ----DDSD------------------------LNH--------PHEAR---LLKLDSSKARTLLGWHPRWGLEEAVSRTV 325 (349)
T ss_pred ----eccC------------------------CCC--------Ccccc---eeecCHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 0000 000 00011 567799999986 9999999999999999
Q ss_pred HHHHh
Q 030297 170 GRLKS 174 (179)
Q Consensus 170 ~~~~~ 174 (179)
+|++.
T Consensus 326 ~w~~~ 330 (349)
T TIGR02622 326 DWYKA 330 (349)
T ss_pred HHHHH
Confidence 98864
No 26
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.54 E-value=4.9e-07 Score=75.27 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
+.++++.+|+++++|+.++.+.+ .||+ +|+.+|+.++...|++.|+- ...+. . .+ ..
T Consensus 225 ~~v~v~Dva~a~~~al~~~~~~~-~yni-~~~~~s~~e~~~~i~~~~~~-~~~~~---~-~~---------~~------- 281 (322)
T PLN02986 225 RFVDVRDVALAHIKALETPSANG-RYII-DGPIMSVNDIIDILRELFPD-LCIAD---T-NE---------ES------- 281 (322)
T ss_pred ceeEHHHHHHHHHHHhcCcccCC-cEEE-ecCCCCHHHHHHHHHHHCCC-CCCCC---C-Cc---------cc-------
Confidence 78999999999999999886554 8999 57789999999999999872 12221 0 00 00
Q ss_pred HHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCC
Q 030297 115 RENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 115 ~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~i 178 (179)
+. .. ....+|.+|++++||++. +.+|++.++++++++.|+|
T Consensus 282 -------------------~~-~~--~~~~~d~~~~~~lg~~~~-~l~e~~~~~~~~~~~~~~~ 322 (322)
T PLN02986 282 -------------------EM-NE--MICKVCVEKVKNLGVEFT-PMKSSLRDTILSLKEKCLL 322 (322)
T ss_pred -------------------cc-cc--cCCccCHHHHHHcCCccc-CHHHHHHHHHHHHHHcCCC
Confidence 00 00 022468899999999985 8999999999999999986
No 27
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.50 E-value=8.7e-07 Score=73.43 Aligned_cols=99 Identities=19% Similarity=0.163 Sum_probs=75.3
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l 113 (179)
.+.++++.+|++++.++..+...| .||++ |+.+|+.++...|++.++... .| ... ..
T Consensus 223 ~~~i~v~Dva~a~~~~~~~~~~~~-~~~~~-g~~~s~~e~~~~i~~~~~~~~-~~--------~~~----~~-------- 279 (322)
T PLN02662 223 YRWVDVRDVANAHIQAFEIPSASG-RYCLV-ERVVHYSEVVKILHELYPTLQ-LP--------EKC----AD-------- 279 (322)
T ss_pred cCeEEHHHHHHHHHHHhcCcCcCC-cEEEe-CCCCCHHHHHHHHHHHCCCCC-CC--------CCC----CC--------
Confidence 478999999999999999876555 69997 788999999999999876321 11 110 00
Q ss_pred HHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCC
Q 030297 114 VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 114 ~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~i 178 (179)
..+ ... ...+|.+|++++||++ ++.++++.++++||++.+++
T Consensus 280 -------~~~------------~~~---~~~~d~~k~~~lg~~~-~~~~~~l~~~~~~~~~~~~~ 321 (322)
T PLN02662 280 -------DKP------------YVP---TYQVSKEKAKSLGIEF-IPLEVSLKDTVESLKEKGFL 321 (322)
T ss_pred -------ccc------------ccc---ccccChHHHHHhCCcc-ccHHHHHHHHHHHHHHcCCC
Confidence 000 011 4568999999889985 78999999999999999875
No 28
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=98.49 E-value=7.2e-07 Score=73.44 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=75.0
Q ss_pred cccCCHHHHHHHHHHHhcCC--CCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDP--NARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWE 111 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p--~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~ 111 (179)
.+.++++.+|+++..++.+. ...+++||+++++..|+.++.+.|++.+|.+..... .+...
T Consensus 226 ~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~-----~~~~~------------ 288 (328)
T TIGR01179 226 RDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVEL-----APRRP------------ 288 (328)
T ss_pred EeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEe-----CCCCC------------
Confidence 37899999999999888753 245799999999999999999999999997643210 11000
Q ss_pred HHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccc-hHHHHHHHHHHHHh
Q 030297 112 EIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRN-SKNSFVAWIGRLKS 174 (179)
Q Consensus 112 ~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~d-t~e~~~~~~~~~~~ 174 (179)
. + .. +..+|.+|+++. ||+|..+ ..++++++++|+++
T Consensus 289 -------------~--------~--~~---~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~ 327 (328)
T TIGR01179 289 -------------G--------D--PA---SLVADASKIRRELGWQPKYTDLEIIIKTAWRWESR 327 (328)
T ss_pred -------------c--------c--cc---chhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 0 0 01 445689999876 9999997 99999999998865
No 29
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.44 E-value=8.4e-07 Score=72.16 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=72.4
Q ss_pred CChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHh
Q 030297 25 GTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMK 104 (179)
Q Consensus 25 G~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~ 104 (179)
|...+++ +.++++.+|+++..++.++.. ++.||+++++.+|+.++...|++.+|.+...+ .|-...+.+.
T Consensus 189 g~~~~~~---~~i~v~Dva~~i~~~l~~~~~-~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~------~p~~~~~~~~ 258 (292)
T TIGR01777 189 GSGRQWF---SWIHIEDLVQLILFALENASI-SGPVNATAPEPVRNKEFAKALARALHRPAFFP------VPAFVLRALL 258 (292)
T ss_pred CCCCccc---ccEeHHHHHHHHHHHhcCccc-CCceEecCCCccCHHHHHHHHHHHhCCCCcCc------CCHHHHHHHh
Confidence 4444444 899999999999999988654 46899999999999999999999999764332 3322222111
Q ss_pred ccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCcc-chHHH
Q 030297 105 GKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFR-NSKNS 164 (179)
Q Consensus 105 ~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~-dt~e~ 164 (179)
+. + + +.... +...+.+|+|+.||++.+ +..|+
T Consensus 259 ~~---~------------~----------~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~ 291 (292)
T TIGR01777 259 GE---M------------A----------DLLLK---GQRVLPEKLLEAGFQFQYPDLDEA 291 (292)
T ss_pred ch---h------------h----------HHHhC---CcccccHHHHhcCCeeeCcChhhc
Confidence 00 0 0 11222 667799999999999999 46554
No 30
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=98.43 E-value=7.5e-07 Score=73.32 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=89.3
Q ss_pred HhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCc
Q 030297 16 HEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSE 95 (179)
Q Consensus 16 ~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~ 95 (179)
..+-|.+--|+-..-| +..+++.++.++-.++.. ...||.|||.+.+..+-.++..-|+++|+......+ . .
T Consensus 206 ~~~~~~~i~g~g~~~r---s~l~veD~~ea~~~v~~K-g~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~--~--~ 277 (331)
T KOG0747|consen 206 MRGKEYPIHGDGLQTR---SYLYVEDVSEAFKAVLEK-GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNID--T--E 277 (331)
T ss_pred HhCCCcceecCcccce---eeEeHHHHHHHHHHHHhc-CCccceeeccCcchhhHHHHHHHHHHHHHHhccCCC--C--C
Confidence 3477777777766555 888888899999877766 456999999999999999999999999998654221 0 1
Q ss_pred cCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHcCCCCccchHHHHHHHHHHHHh
Q 030297 96 RVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 96 ~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
|+ + ..+. |+-++ + .-.+|.+|++++||+|.+...+|+++++++|.+
T Consensus 278 p~-~-~~v~-----------------------------dRp~n--d~Ry~~~~eKik~LGw~~~~p~~eGLrktie~y~~ 324 (331)
T KOG0747|consen 278 PF-I-FFVE-----------------------------DRPYN--DLRYFLDDEKIKKLGWRPTTPWEEGLRKTIEWYTK 324 (331)
T ss_pred Cc-c-eecC-----------------------------CCCcc--cccccccHHHHHhcCCcccCcHHHHHHHHHHHHHh
Confidence 10 0 1111 22233 2 457899999999999999999999999999986
Q ss_pred C
Q 030297 175 H 175 (179)
Q Consensus 175 ~ 175 (179)
.
T Consensus 325 ~ 325 (331)
T KOG0747|consen 325 N 325 (331)
T ss_pred h
Confidence 4
No 31
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.39 E-value=1.1e-06 Score=76.97 Aligned_cols=113 Identities=16% Similarity=0.134 Sum_probs=84.0
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCC--CceeccCCCcccHHHHHHHHHHH---hcCccCCCCCC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARN--EAFNCTNGDVFKWKHLWKVLAEQ---FEIENYGFGDE 91 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~g--eaFNi~dg~~~sw~~lw~~iA~~---fG~~~~~p~~~ 91 (179)
.|.|+++.|+-..++ ++++++.+|++++.++..+.+.| +.|||.. ...|..++...|++. +|.+...-.
T Consensus 295 ~g~~i~v~g~G~~~R---dfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i~~~~~~~g~~~~~~~-- 368 (442)
T PLN02572 295 VGHPLTVYGKGGQTR---GFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLVTKAGEKLGLDVEVIS-- 368 (442)
T ss_pred cCCCceecCCCCEEE---CeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHHHHHHHhhCCCCCeee--
Confidence 477887657766667 99999999999999988765555 5899975 679999999999999 886533110
Q ss_pred CCCccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCcc---chHHHHHHH
Q 030297 92 KGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFR---NSKNSFVAW 168 (179)
Q Consensus 92 ~~~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~---dt~e~~~~~ 168 (179)
.|... . +.... ....|.+|+|++||.|.+ +..+++.++
T Consensus 369 ---~p~~~----~-----------------------------~~~~~---~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~ 409 (442)
T PLN02572 369 ---VPNPR----V-----------------------------EAEEH---YYNAKHTKLCELGLEPHLLSDSLLDSLLNF 409 (442)
T ss_pred ---CCCCc----c-----------------------------ccccc---ccCccHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 11100 0 00001 445699999999999999 999999999
Q ss_pred HHHHHh
Q 030297 169 IGRLKS 174 (179)
Q Consensus 169 ~~~~~~ 174 (179)
++|||.
T Consensus 410 ~~~~~~ 415 (442)
T PLN02572 410 AVKYKD 415 (442)
T ss_pred HHHHHh
Confidence 999974
No 32
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=1.2e-06 Score=72.53 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=88.5
Q ss_pred HhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCc
Q 030297 16 HEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSE 95 (179)
Q Consensus 16 ~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~ 95 (179)
-.|.|+|-=|+=.+=| +..+++..|+++...++..+. ||+|||.-|.-.+=-++...||+.+|.....-.
T Consensus 201 l~g~~lpvYGdG~~iR---DWl~VeDh~~ai~~Vl~kg~~-GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~------ 270 (340)
T COG1088 201 LLGKPLPVYGDGLQIR---DWLYVEDHCRAIDLVLTKGKI-GETYNIGGGNERTNLEVVKTICELLGKDKPDYR------ 270 (340)
T ss_pred HcCCCCceecCCccee---eeEEeHhHHHHHHHHHhcCcC-CceEEeCCCccchHHHHHHHHHHHhCccccchh------
Confidence 3599999448877666 999999999999988887665 999999988888889999999999997654210
Q ss_pred cCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHH-HcCCCCccchHHHHHHHHHHHH
Q 030297 96 RVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSK-EHGFLGFRNSKNSFVAWIGRLK 173 (179)
Q Consensus 96 ~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar-~~Gf~~~~dt~e~~~~~~~~~~ 173 (179)
.+..++. |+-=. + ..-+|.+|++ ++||.|.++.++|++++++||.
T Consensus 271 --~li~~V~-----------------------------DRpGH--D~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~ 317 (340)
T COG1088 271 --DLITFVE-----------------------------DRPGH--DRRYAIDASKIKRELGWRPQETFETGLRKTVDWYL 317 (340)
T ss_pred --hheEecc-----------------------------CCCCC--ccceeechHHHhhhcCCCcCCCHHHHHHHHHHHHH
Confidence 0001111 22111 2 4567889965 5599999999999999999997
Q ss_pred hC
Q 030297 174 SH 175 (179)
Q Consensus 174 ~~ 175 (179)
+-
T Consensus 318 ~N 319 (340)
T COG1088 318 DN 319 (340)
T ss_pred hc
Confidence 64
No 33
>PRK05865 hypothetical protein; Provisional
Probab=98.35 E-value=2.6e-06 Score=79.91 Aligned_cols=103 Identities=9% Similarity=0.112 Sum_probs=73.3
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l 113 (179)
.++++++.+|++++.++.++...++.|||++|+.+|+.++-..+++... + .+..+...... ..+
T Consensus 155 ~dfIhVdDVA~Ai~~aL~~~~~~ggvyNIgsg~~~Si~EIae~l~~~~~-----~------v~~~~~~~~~~----~~~- 218 (854)
T PRK05865 155 VQVVHSDDAQRLLVRALLDTVIDSGPVNLAAPGELTFRRIAAALGRPMV-----P------IGSPVLRRVTS----FAE- 218 (854)
T ss_pred EeeeeHHHHHHHHHHHHhCCCcCCCeEEEECCCcccHHHHHHHHhhhhc-----c------CCchhhhhccc----hhh-
Confidence 3889999999999999877666688999999999999998887765321 1 11111000000 000
Q ss_pred HHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 114 VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 114 ~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
.+.... ...+|.+|+++. ||+|.++..+++++++++||+
T Consensus 219 -------------------~~~~~~---~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r~ 258 (854)
T PRK05865 219 -------------------LELLHS---APLMDVTLLRDRWGFQPAWNAEECLEDFTLAVRG 258 (854)
T ss_pred -------------------hhcccC---CccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 011111 456899999987 999999999999999999986
No 34
>PLN02650 dihydroflavonol-4-reductase
Probab=98.34 E-value=3.3e-06 Score=71.22 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=75.0
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
++++++.+|++++.++..+...+ .|| ..|...|+.++...|++.++.. ..| ..+ .
T Consensus 227 ~~v~V~Dva~a~~~~l~~~~~~~-~~i-~~~~~~s~~el~~~i~~~~~~~-~~~--------~~~----~---------- 281 (351)
T PLN02650 227 QFVHLDDLCNAHIFLFEHPAAEG-RYI-CSSHDATIHDLAKMLREKYPEY-NIP--------ARF----P---------- 281 (351)
T ss_pred ceeeHHHHHHHHHHHhcCcCcCc-eEE-ecCCCcCHHHHHHHHHHhCccc-CCC--------CCC----C----------
Confidence 88999999999999998765444 795 5567799999999999987621 111 110 0
Q ss_pred HHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCCC
Q 030297 115 RENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 115 ~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~iP 179 (179)
+ .+. + .. ....|.+|++.+||+|.++..++++++++++++.+.+|
T Consensus 282 ---~-~~~-----------~--~~---~~~~d~~k~~~lG~~p~~~l~egl~~~i~~~~~~~~~~ 326 (351)
T PLN02650 282 ---G-IDE-----------D--LK---SVEFSSKKLTDLGFTFKYSLEDMFDGAIETCREKGLIP 326 (351)
T ss_pred ---C-cCc-----------c--cc---cccCChHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 0 000 0 11 44568999988899999999999999999999998875
No 35
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.32 E-value=2.6e-06 Score=71.09 Aligned_cols=121 Identities=10% Similarity=0.060 Sum_probs=80.0
Q ss_pred ccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHH
Q 030297 33 FSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEE 112 (179)
Q Consensus 33 ~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~ 112 (179)
..+.++++.+|+++..++.+|...|++|||++++.+|..++...+++.+|.+....+ .|..+...+. .|..
T Consensus 173 ~~~~i~v~Dva~~~~~~l~~~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~-----vp~~~~~~~~----~~~~ 243 (317)
T CHL00194 173 PISYIDTQDAAKFCLKSLSLPETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISR-----VPLFLLKLLR----QITG 243 (317)
T ss_pred ccCccCHHHHHHHHHHHhcCccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEe-----CCHHHHHHHH----HHHh
Confidence 348889999999999999888888999999999999999999999999998754322 4544432221 2211
Q ss_pred HHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc-CCCC--ccchHHHHHHHHH
Q 030297 113 IVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH-GFLG--FRNSKNSFVAWIG 170 (179)
Q Consensus 113 l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~-Gf~~--~~dt~e~~~~~~~ 170 (179)
..+.. ++....... -.+++ .+ +...+.+++++. |+.| ....++.+.+.++
T Consensus 244 ---~~~~~-~~~~~~l~~---~~~~~-~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~ 297 (317)
T CHL00194 244 ---FFEWT-WNISDRLAF---VEILN-TSNNFSSSMAELYKIFKIDPNELISLEDYFQEYFE 297 (317)
T ss_pred ---hcccc-hhhHHHHHH---HHHHh-cCCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence 11110 011110011 12233 33 666788899888 9998 3567777777665
No 36
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.25 E-value=7.2e-06 Score=67.24 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=89.1
Q ss_pred HhCCC-ccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCC-cccHHHHHHHHHHHhcCccCCCCCCCC
Q 030297 16 HEGFP-LLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGD-VFKWKHLWKVLAEQFEIENYGFGDEKG 93 (179)
Q Consensus 16 ~~g~p-l~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~-~~sw~~lw~~iA~~fG~~~~~p~~~~~ 93 (179)
..+.| ..+.|+..+.+ +.++++++|+++++++.++... .|||++++ ..|..++...+++.+|.+..... .
T Consensus 194 ~~~~~~~~~~~~~~~~~---~~i~v~D~a~~~~~~~~~~~~~--~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~ 265 (314)
T COG0451 194 LKGEPIIVIGGDGSQTR---DFVYVDDVADALLLALENPDGG--VFNIGSGTAEITVRELAEAVAEAVGSKAPLIV---Y 265 (314)
T ss_pred HhCCCcceEeCCCceeE---eeEeHHHHHHHHHHHHhCCCCc--EEEeCCCCCcEEHHHHHHHHHHHhCCCCccee---e
Confidence 45666 66766666555 8889999999999999988766 99999997 89999999999999998865310 0
Q ss_pred CccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHH
Q 030297 94 SERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRL 172 (179)
Q Consensus 94 ~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~ 172 (179)
.+. ... ..... ...+|.+|+++. ||+|..+..+++.++.+++
T Consensus 266 -~~~--------------------------~~~-------~~~~~---~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~ 308 (314)
T COG0451 266 -IPL--------------------------GRR-------GDLRE---GKLLDISKARAALGWEPKVSLEEGLADTLEWL 308 (314)
T ss_pred -cCC--------------------------CCC-------Ccccc---cccCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 110 000 11111 778899999977 9999999999999999998
Q ss_pred HhCC
Q 030297 173 KSHR 176 (179)
Q Consensus 173 ~~~~ 176 (179)
...+
T Consensus 309 ~~~~ 312 (314)
T COG0451 309 LKKL 312 (314)
T ss_pred HHhh
Confidence 8764
No 37
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.23 E-value=1.5e-05 Score=66.76 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=73.7
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEI 113 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l 113 (179)
.++++++.+|++++.++.++... +.|| ..|+..|+.++...|++.++... .+...
T Consensus 238 ~~~i~V~D~a~a~~~~~~~~~~~-~~~~-~~~~~~s~~el~~~i~~~~~~~~---------~~~~~-------------- 292 (338)
T PLN00198 238 ISITHVEDVCRAHIFLAEKESAS-GRYI-CCAANTSVPELAKFLIKRYPQYQ---------VPTDF-------------- 292 (338)
T ss_pred cceeEHHHHHHHHHHHhhCcCcC-CcEE-EecCCCCHHHHHHHHHHHCCCCC---------CCccc--------------
Confidence 48999999999999999886543 4685 55678899999999998775311 11110
Q ss_pred HHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCC
Q 030297 114 VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 114 ~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~i 178 (179)
+-. + . -. ...+|.+|+++.||+|.++.+|+++++++|+++.+++
T Consensus 293 ----~~~--~--~----------~~---~~~~~~~k~~~~G~~p~~~l~~gi~~~~~~~~~~~~~ 336 (338)
T PLN00198 293 ----GDF--P--S----------KA---KLIISSEKLISEGFSFEYGIEEIYDQTVEYFKAKGLL 336 (338)
T ss_pred ----ccc--C--C----------CC---ccccChHHHHhCCceecCcHHHHHHHHHHHHHHcCCC
Confidence 000 0 0 01 3456889999999999999999999999999998876
No 38
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=98.22 E-value=1.2e-05 Score=67.96 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
++++++.+|++++.++..+... ..||+ .|+.+|+.++...|++.++... + .+.. ..
T Consensus 247 dfi~v~Dva~a~~~~l~~~~~~-~~~~~-~~~~~s~~el~~~i~~~~~~~~--~-------~~~~---~~---------- 302 (353)
T PLN02896 247 ALVHIEDICDAHIFLMEQTKAE-GRYIC-CVDSYDMSELINHLSKEYPCSN--I-------QVRL---DE---------- 302 (353)
T ss_pred eEEeHHHHHHHHHHHHhCCCcC-ccEEe-cCCCCCHHHHHHHHHHhCCCCC--c-------cccc---cc----------
Confidence 7899999999999999875543 47976 4778999999999999986321 1 0000 00
Q ss_pred HHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCCC
Q 030297 115 RENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 115 ~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~iP 179 (179)
+... +. ...+|.+|++++||.|.++..+++.++++++++.+.+|
T Consensus 303 -------~~~~--------~~------~~~~~~~~~~~lGw~p~~~l~~~i~~~~~~~~~~~~~~ 346 (353)
T PLN02896 303 -------EKRG--------SI------PSEISSKKLRDLGFEYKYGIEEIIDQTIDCCVDHGFLP 346 (353)
T ss_pred -------cccC--------cc------ccccCHHHHHHcCCCccCCHHHHHHHHHHHHHHCCCCC
Confidence 0000 00 22458899998899999999999999999999998875
No 39
>PRK07201 short chain dehydrogenase; Provisional
Probab=98.18 E-value=2.5e-05 Score=71.06 Aligned_cols=121 Identities=8% Similarity=-0.026 Sum_probs=78.2
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCcc---CCCCCCCCCccCCHHHHHhc---cH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIEN---YGFGDEKGSERVRLEEIMKG---KE 107 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~---~~p~~~~~~~~~~l~~~~~~---~~ 107 (179)
.+.++++.+|++++.++..+...|++|||++++.+||.++...|++.+|.+. .... .|..+...+.. ..
T Consensus 220 ~~~v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-----~p~~~~~~~~~~~~~~ 294 (657)
T PRK07201 220 TNIVPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGF-----LPGFVAAPLLAALGPV 294 (657)
T ss_pred eeeeeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCcccccccc-----CChHHHHHHhhhcchh
Confidence 3888999999999999988878899999999999999999999999999876 2111 44444333322 12
Q ss_pred HHHHHH-HHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc--CCC-CccchHHHHHHHHHH
Q 030297 108 SVWEEI-VRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH--GFL-GFRNSKNSFVAWIGR 171 (179)
Q Consensus 108 ~~w~~l-~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~--Gf~-~~~dt~e~~~~~~~~ 171 (179)
..+.+. .++.++.+..+ +..-. ...+|.+|+++. |.. ......+.+.+.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~l---------~~~~~---~~~f~~~~~~~~L~~~~~~~p~~~~~~~~~~~~ 350 (657)
T PRK07201 295 RRLRNAVATQLGIPPEVL---------DFVNY---PTTFDSRETRAALKGSGIEVPRLASYAPRLWDY 350 (657)
T ss_pred hHHHHHHHHhcCCCHHHH---------HhccC---CCeeccHHHHHHhccCCcCCCChHHHHHHHHHH
Confidence 222222 23334432222 22111 678899999876 332 222444666666653
No 40
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.06 E-value=1.2e-05 Score=66.43 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=54.9
Q ss_pred CCCccCCCChhhhccccccCCHHHHHHHHHHHhc-------CCCCCCCceeccCCCccc-HHHHHHHHHHHhcCccCC
Q 030297 18 GFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAV-------DPNARNEAFNCTNGDVFK-WKHLWKVLAEQFEIENYG 87 (179)
Q Consensus 18 g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~-------~p~a~geaFNi~dg~~~s-w~~lw~~iA~~fG~~~~~ 87 (179)
|..+...|... ...++++++|+|++++.|+. .+.+.||+|+|+||++.. ..+++..+.+.+|.+...
T Consensus 200 g~~~~~~g~~~---~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 200 GLFLFQIGDGN---NLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred cccceeecCCC---ceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 43444446655 45599999999999999975 245789999999999999 999999999999998765
No 41
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=97.80 E-value=7.7e-05 Score=61.80 Aligned_cols=100 Identities=11% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHHHHhC
Q 030297 39 ADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQ 118 (179)
Q Consensus 39 ~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~~~~g 118 (179)
+|.+++++..++..+. .++.||+++++..||.++...|++.+|..+...+. ....+.+... ..
T Consensus 193 ~d~~~~~~~~~~~~~~-~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~-~~i~~~~~~~-~~-------------- 255 (299)
T PRK09987 193 ADCTAHAIRVALNKPE-VAGLYHLVASGTTTWHDYAALVFEEARKAGITLAL-NKLNAVPTSA-YP-------------- 255 (299)
T ss_pred HHHHHHHHHHhhccCC-CCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCc-Ceeeecchhh-cC--------------
Confidence 5556677766665543 34699999999999999999998865432211000 0001111100 00
Q ss_pred CCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc-CCCCccchHHHHHHHHHHHH
Q 030297 119 LQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLK 173 (179)
Q Consensus 119 L~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~ 173 (179)
.+- . .. +..+|.+|+++. ||++. +.++++++++++|.
T Consensus 256 ---~~~-------------~-rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~~~~ 294 (299)
T PRK09987 256 ---TPA-------------R-RPHNSRLNTEKFQQNFALVLP-DWQVGVKRMLTELF 294 (299)
T ss_pred ---CCC-------------C-CCCcccCCHHHHHHHhCCCCc-cHHHHHHHHHHHHh
Confidence 000 0 11 667899999986 99974 99999999998764
No 42
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.65 E-value=0.0033 Score=52.33 Aligned_cols=125 Identities=10% Similarity=0.126 Sum_probs=77.7
Q ss_pred cccCCHHHHHHHHHHHhcCCCCC--CCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNAR--NEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWE 111 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~--geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~ 111 (179)
.+.++++.+|++++.++..+... |+.|||++++++||.++.+.+++ .|.+... +++.+|+.
T Consensus 230 ~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~~---------~~~~~w~~------- 292 (367)
T TIGR01746 230 EDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLKL---------VSFDEWLQ------- 292 (367)
T ss_pred cCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCCc---------CCHHHHHH-------
Confidence 36889999999999999877653 89999999999999999999999 7765432 22323333
Q ss_pred HHHHHhCCC--CCCcccchhhhhhHHh---hhcc-C-ccccchhhHHH----cCCCCccchHHHHHHHHHHHHhCCCC
Q 030297 112 EIVRENQLQ--PTKLNEVAVWSYADMV---MNVG-A-GYSVSMNKSKE----HGFLGFRNSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 112 ~l~~~~gL~--~~~l~~~~~~~f~d~~---~~~~-~-~~~~d~~Kar~----~Gf~~~~dt~e~~~~~~~~~~~~~~i 178 (179)
...++.-. ...+.. ...++++. .... . ...++.+++++ .|...+.-..+-+++.++.+++.+.|
T Consensus 293 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (367)
T TIGR01746 293 -RLEDSDTAKRDPPRYP--LLPLLHFLGAGFEEPEFDTRNLDSRSTAEALEGDGIREPSITAPLLHLYLQYLKEIGFL 367 (367)
T ss_pred -HHHHhhhcCCCccccc--chhhhhccCCCcccccccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 22221110 111111 11122221 1100 0 23556666643 37666666778899999999887754
No 43
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.57 E-value=0.00048 Score=57.47 Aligned_cols=99 Identities=11% Similarity=0.046 Sum_probs=75.4
Q ss_pred ccccccCCHHHHHHHHHHHhcCCCCC--CCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHH
Q 030297 31 EGFSEYSDADLIAEQEIWAAVDPNAR--NEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKES 108 (179)
Q Consensus 31 ~~~~~~~~~~~la~~~i~a~~~p~a~--geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~ 108 (179)
.+.-+.+.+..||++++.|...=... +++||+.+|..+|-.|+.....+..|.+...-- .|
T Consensus 219 T~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~-----~~------------ 281 (329)
T COG1087 219 TCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEI-----AP------------ 281 (329)
T ss_pred CeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceee-----CC------------
Confidence 35558888888999999998843223 369999999999999999999999996643210 00
Q ss_pred HHHHHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc-CCCCcc-chHHHHHHHHHHHH
Q 030297 109 VWEEIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH-GFLGFR-NSKNSFVAWIGRLK 173 (179)
Q Consensus 109 ~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~-Gf~~~~-dt~e~~~~~~~~~~ 173 (179)
.. -+ -. .+.-|.+|||+. ||+|.+ |.++.++.+++|.+
T Consensus 282 -------------RR-------------~G-Dpa~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~ 322 (329)
T COG1087 282 -------------RR-------------AG-DPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQ 322 (329)
T ss_pred -------------CC-------------CC-CCceeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhh
Confidence 00 00 01 677899999988 999999 88888999998887
No 44
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.40 E-value=0.0012 Score=55.69 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHHH
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVR 115 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~~ 115 (179)
.++++.+|.+++.|.+.|.|.|+ |.+.+.... |+++...|.+.|-.-. .|. . . .+.+
T Consensus 228 ~VdVrDVA~AHv~a~E~~~a~GR-yic~~~~~~-~~ei~~~l~~~~P~~~-ip~---~-~-----------~~~~----- 284 (327)
T KOG1502|consen 228 FVDVRDVALAHVLALEKPSAKGR-YICVGEVVS-IKEIADILRELFPDYP-IPK---K-N-----------AEEH----- 284 (327)
T ss_pred eEeHHHHHHHHHHHHcCcccCce-EEEecCccc-HHHHHHHHHHhCCCCC-CCC---C-C-----------Cccc-----
Confidence 78899999999999999999986 877754444 8888888877775444 221 0 0 0000
Q ss_pred HhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccchHHHHHHHHHHHHhCCCCC
Q 030297 116 ENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRNSKNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 116 ~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~dt~e~~~~~~~~~~~~~~iP 179 (179)
+..+. ...+|.+|+++.||.......|++.+++..+++.++++
T Consensus 285 ------------------~~~~~---~~~~~~~k~k~lg~~~~~~l~e~~~dt~~sl~~~~~l~ 327 (327)
T KOG1502|consen 285 ------------------EGFLT---SFKVSSEKLKSLGGFKFRPLEETLSDTVESLREKGLLL 327 (327)
T ss_pred ------------------ccccc---ccccccHHHHhcccceecChHHHHHHHHHHHHHhcCCC
Confidence 01011 34679999999999999999999999999999999875
No 45
>PLN02778 3,5-epimerase/4-reductase
Probab=97.11 E-value=0.0055 Score=50.89 Aligned_cols=101 Identities=14% Similarity=0.114 Sum_probs=69.2
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
+.++++.++++++.++.... +++|||++++.+|+.++...|++.+|.+.. + ..+.+.+..
T Consensus 193 s~~yv~D~v~al~~~l~~~~--~g~yNigs~~~iS~~el~~~i~~~~~~~~~-~------~~~~i~~~~----------- 252 (298)
T PLN02778 193 SMTILDELLPISIEMAKRNL--TGIYNFTNPGVVSHNEILEMYRDYIDPSFT-W------KNFTLEEQA----------- 252 (298)
T ss_pred CCEEHHHHHHHHHHHHhCCC--CCeEEeCCCCcccHHHHHHHHHHHhCCCce-e------ccccHHHHH-----------
Confidence 57788999999998886532 469999999999999999999999996531 1 111111000
Q ss_pred HHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHcCCCC-ccchHHHHHHHHHHHHhCC
Q 030297 115 RENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEHGFLG-FRNSKNSFVAWIGRLKSHR 176 (179)
Q Consensus 115 ~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~Gf~~-~~dt~e~~~~~~~~~~~~~ 176 (179)
..... .. +..+|.+|+++. |-. ..+..++++..++.|++.+
T Consensus 253 -------------------~~~~~-~~~~~~Ld~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 295 (298)
T PLN02778 253 -------------------KVIVA-PRSNNELDTTKLKRE-FPELLPIKESLIKYVFEPNKKTK 295 (298)
T ss_pred -------------------HHHhC-CCccccccHHHHHHh-cccccchHHHHHHHHHHHHHhhh
Confidence 00111 11 446899999888 434 3356788999999886653
No 46
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.06 E-value=0.0038 Score=53.88 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=53.7
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccC-CCcccHHHHHHHHHHHhcCccC
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTN-GDVFKWKHLWKVLAEQFEIENY 86 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~d-g~~~sw~~lw~~iA~~fG~~~~ 86 (179)
.|.|+...|+-...+ ...++++.+|++++.++.++...|+.|||.+ ++..|+.++...+++.+|.+..
T Consensus 233 ~g~~~~~~GdG~~~~--~~~I~v~DlA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~ 301 (390)
T PLN02657 233 DGGPYVMFGDGKLCA--CKPISEADLASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPK 301 (390)
T ss_pred cCCceEEecCCcccc--cCceeHHHHHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCc
Confidence 366765446543211 2468899999999999988887899999997 4689999999999999998654
No 47
>PLN02686 cinnamoyl-CoA reductase
Probab=97.00 E-value=0.001 Score=56.80 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=43.3
Q ss_pred ccCCHHHHHHHHHHHhcCC--CCCCCceeccCCCcccHHHHHHHHHHHhcCccC
Q 030297 35 EYSDADLIAEQEIWAAVDP--NARNEAFNCTNGDVFKWKHLWKVLAEQFEIENY 86 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p--~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~ 86 (179)
+.++++.+|++++.|+..+ ...++.| |++|+.+|..++...|++.+|.+..
T Consensus 276 ~~v~V~Dva~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~ 328 (367)
T PLN02686 276 ATADVERLAEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPIN 328 (367)
T ss_pred CeEEHHHHHHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCC
Confidence 5888999999999998853 3457789 7888999999999999999997644
No 48
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=96.97 E-value=0.0041 Score=51.74 Aligned_cols=122 Identities=12% Similarity=0.106 Sum_probs=83.3
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCcc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSER 96 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~ 96 (179)
+-..|.. |+..+.| +...+...+++++..+..++ .+.|+|+-|+..|-.++...-.+..|++..--..-.. .
T Consensus 210 ~q~~l~l-GNldAkR---DWG~A~DYVe~mwlmLQq~~--PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~--e 281 (345)
T COG1089 210 LQDKLYL-GNLDAKR---DWGHAKDYVEAMWLMLQQEE--PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVD--E 281 (345)
T ss_pred ccceEEe-ccccccc---cccchHHHHHHHHHHHccCC--CCceEEecCceeeHHHHHHHHHHHcCceEEEeecccc--c
Confidence 3445556 9999888 99999999999999988865 7899999999999999999999999966553210000 0
Q ss_pred CCHHHHHhccHHHHHHHHHHhC-----CCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHH
Q 030297 97 VRLEEIMKGKESVWEEIVRENQ-----LQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIG 170 (179)
Q Consensus 97 ~~l~~~~~~~~~~w~~l~~~~g-----L~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~ 170 (179)
.. .. .+.| ..+.-+.+ +- .|. +..|.+||++. ||.|.+++.|-.+.+++
T Consensus 282 ~g-------~d-------a~~G~~~V~idp~~fRP-aE---V~~-------Llgdp~KA~~~LGW~~~~~~~elv~~Mv~ 336 (345)
T COG1089 282 KG-------VD-------AKTGKIIVEIDPRYFRP-AE---VDL-------LLGDPTKAKEKLGWRPEVSLEELVREMVE 336 (345)
T ss_pred cc-------cc-------cccCceeEEECccccCc-hh---hhh-------hcCCHHHHHHHcCCccccCHHHHHHHHHH
Confidence 00 00 0011 01111111 00 133 34599999955 99999999999988886
Q ss_pred H
Q 030297 171 R 171 (179)
Q Consensus 171 ~ 171 (179)
.
T Consensus 337 ~ 337 (345)
T COG1089 337 A 337 (345)
T ss_pred H
Confidence 3
No 49
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.95 E-value=0.0084 Score=49.60 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=92.7
Q ss_pred HHHHHHHHHh-HhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCc
Q 030297 6 TLCVYAAICK-HEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIE 84 (179)
Q Consensus 6 ~l~iy~s~~r-~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~ 84 (179)
.|+.+.-+|| .+|-| | |+=+-|- +.+..+.+++++.++.+++.+.| .||.+--.|++-+++-..|++.++.+
T Consensus 170 aL~~m~~~fk~glGG~--~-GsGrQ~~---SWIhieD~v~~I~fll~~~~lsG-p~N~taP~PV~~~~F~~al~r~l~RP 242 (297)
T COG1090 170 ALGKMLPLFKLGLGGK--L-GSGRQWF---SWIHIEDLVNAILFLLENEQLSG-PFNLTAPNPVRNKEFAHALGRALHRP 242 (297)
T ss_pred chhhhcchhhhccCCc--c-CCCCcee---eeeeHHHHHHHHHHHHhCcCCCC-cccccCCCcCcHHHHHHHHHHHhCCC
Confidence 3455555565 44444 7 8877777 99999999999999999999888 79999999999999999999999999
Q ss_pred cCCCCCCCCCccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCcc-chHH
Q 030297 85 NYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFR-NSKN 163 (179)
Q Consensus 85 ~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~-dt~e 163 (179)
...+ .|--+.+.+.+ ..++.++. .+.+=-.|+.+.||+=.+ |..+
T Consensus 243 ~~~~------vP~~~~rl~LG-------------------------e~a~~lL~---gQrvlP~kl~~aGF~F~y~dl~~ 288 (297)
T COG1090 243 AILP------VPSFALRLLLG-------------------------EMADLLLG---GQRVLPKKLEAAGFQFQYPDLEE 288 (297)
T ss_pred cccc------CcHHHHHHHhh-------------------------hhHHHHhc---cchhhHHHHHHCCCeeecCCHHH
Confidence 8776 45333333322 12244555 666677889999998766 6677
Q ss_pred HHHHHHH
Q 030297 164 SFVAWIG 170 (179)
Q Consensus 164 ~~~~~~~ 170 (179)
++.+.++
T Consensus 289 AL~~il~ 295 (297)
T COG1090 289 ALADILK 295 (297)
T ss_pred HHHHHHh
Confidence 7766553
No 50
>PLN02996 fatty acyl-CoA reductase
Probab=96.91 E-value=0.0016 Score=57.97 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=55.6
Q ss_pred HhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCC--C-CCCCceeccCC--CcccHHHHHHHHHHHhcCcc
Q 030297 16 HEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDP--N-ARNEAFNCTNG--DVFKWKHLWKVLAEQFEIEN 85 (179)
Q Consensus 16 ~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p--~-a~geaFNi~dg--~~~sw~~lw~~iA~~fG~~~ 85 (179)
..|.+..++|+..+.+ +++++|.+|++++.++.++ . ..+++|||++| .++||.++-..+.++++..+
T Consensus 290 ~~g~~~~~~gdg~~~~---D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 290 GKGKLTCFLADPNSVL---DVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred ccceEeEEecCCCeec---ceecccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 4477777888887556 9999999999999998753 2 34689999988 88999999999999998554
No 51
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0047 Score=49.97 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=81.0
Q ss_pred CC-Ccc-CCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCC--cccHHHHHHHHHHHhcCccCCCCCCCC
Q 030297 18 GF-PLL-FPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGD--VFKWKHLWKVLAEQFEIENYGFGDEKG 93 (179)
Q Consensus 18 g~-pl~-FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~--~~sw~~lw~~iA~~fG~~~~~p~~~~~ 93 (179)
|. ++. | |+-.--| ++++++.||+++||+...=. .=|--|++-|+ -+|-.++-+.+.+.+|-.+..--|..+
T Consensus 195 gtd~~~Vw-GsG~PlR---qFiys~DLA~l~i~vlr~Y~-~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK 269 (315)
T KOG1431|consen 195 GTDELTVW-GSGSPLR---QFIYSDDLADLFIWVLREYE-GVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTK 269 (315)
T ss_pred CCceEEEe-cCCChHH---HHhhHhHHHHHHHHHHHhhc-CccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccC
Confidence 44 444 6 6654335 89999999999999998532 23678888777 699999999999999998875421111
Q ss_pred CccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHcCCCCccc-hHHHHHHHHHHH
Q 030297 94 SERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEHGFLGFRN-SKNSFVAWIGRL 172 (179)
Q Consensus 94 ~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf~~~~d-t~e~~~~~~~~~ 172 (179)
+ |..+ .-..|.+|+|++||++... .++++.++.+||
T Consensus 270 --~-------------------------------------DGq~----kKtasnsKL~sl~pd~~ft~l~~ai~~t~~Wy 306 (315)
T KOG1431|consen 270 --S-------------------------------------DGQF----KKTASNSKLRSLLPDFKFTPLEQAISETVQWY 306 (315)
T ss_pred --C-------------------------------------CCCc----ccccchHHHHHhCCCcccChHHHHHHHHHHHH
Confidence 0 1111 3456999999999999996 999999999998
Q ss_pred Hh
Q 030297 173 KS 174 (179)
Q Consensus 173 ~~ 174 (179)
.+
T Consensus 307 ~~ 308 (315)
T KOG1431|consen 307 LD 308 (315)
T ss_pred HH
Confidence 64
No 52
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.86 E-value=0.00035 Score=57.81 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=62.7
Q ss_pred ccCCHHHHHHHHHHHhcCCCC---CCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNA---RNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWE 111 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a---~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~ 111 (179)
+.++++.+|++++.++....+ ....||+++.+.+||-++-..|++.+|.+.... .|.+..+ +
T Consensus 182 ~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i------~~~~~~~-~-------- 246 (286)
T PF04321_consen 182 SPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELI------KPVSSSE-F-------- 246 (286)
T ss_dssp --EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEE------EEESSTT-S--------
T ss_pred CCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceE------Eeccccc-C--------
Confidence 889999999999999986433 457999999999999999999999999998432 1111100 0
Q ss_pred HHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc-CCCCccchHHHHHHHHHHH
Q 030297 112 EIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRL 172 (179)
Q Consensus 112 ~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~ 172 (179)
...-. .. +..+|.+|+++. |+++ .+..+++.+.++++
T Consensus 247 ----------------------~~~~~-rp~~~~L~~~kl~~~~g~~~-~~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 247 ----------------------PRAAP-RPRNTSLDCRKLKNLLGIKP-PPWREGLEELVKQY 285 (286)
T ss_dssp ----------------------TTSSG-S-SBE-B--HHHHHCTTS----BHHHHHHHHHHHH
T ss_pred ----------------------CCCCC-CCCcccccHHHHHHccCCCC-cCHHHHHHHHHHHh
Confidence 00000 22 778999999999 9877 56888888888765
No 53
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.63 E-value=0.0091 Score=48.70 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=49.8
Q ss_pred cccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccC
Q 030297 32 GFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENY 86 (179)
Q Consensus 32 ~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~ 86 (179)
...+.++++.+|+++..++.++...|+.||++.++.+|+.++...|++.+|.+..
T Consensus 164 ~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~ 218 (285)
T TIGR03649 164 GKIPFVSADDIARVAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKIT 218 (285)
T ss_pred CccCcccHHHHHHHHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCCceE
Confidence 3458999999999999999988778899999999999999999999999998754
No 54
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=96.55 E-value=0.0027 Score=40.82 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=23.5
Q ss_pred ccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 142 GYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 142 ~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
.+..|.+||++. ||+|.++..++++.+++|..+
T Consensus 24 ~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~ 57 (62)
T PF13950_consen 24 HLVADISKAREELGWKPKYSLEDMIRDAWNWQKK 57 (62)
T ss_dssp EE-B--HHHHHHC----SSSHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHH
Confidence 568899999988 999999999999999999875
No 55
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=96.49 E-value=0.0017 Score=50.91 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=40.6
Q ss_pred HhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceecc
Q 030297 16 HEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCT 63 (179)
Q Consensus 16 ~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~ 63 (179)
..|.|+++||+-..++ ++++++.+|++++++++++.+.|++|||+
T Consensus 192 ~~~~~~~~~~~~~~~~---~~i~v~D~a~~~~~~~~~~~~~~~~yNig 236 (236)
T PF01370_consen 192 LKGKPIKIPGDGSQVR---DFIHVDDLAEAIVAALENPKAAGGIYNIG 236 (236)
T ss_dssp HTTSSEEEESTSSCEE---EEEEHHHHHHHHHHHHHHSCTTTEEEEES
T ss_pred hcCCcccccCCCCCcc---ceEEHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 4588899989888777 99999999999999999998889999985
No 56
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=96.12 E-value=0.072 Score=44.50 Aligned_cols=109 Identities=14% Similarity=0.075 Sum_probs=71.8
Q ss_pred CCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccC
Q 030297 18 GFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERV 97 (179)
Q Consensus 18 g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~ 97 (179)
+.|+.-=|+=..-| ++++++.+++..+....++...+ |||.|-+-+|-.+|-+.+-+..|-+...-
T Consensus 223 ~epltv~g~G~qtR---SF~yvsD~Vegll~Lm~s~~~~p--vNiGnp~e~Tm~elAemv~~~~~~~s~i~--------- 288 (350)
T KOG1429|consen 223 GEPLTVYGDGKQTR---SFQYVSDLVEGLLRLMESDYRGP--VNIGNPGEFTMLELAEMVKELIGPVSEIE--------- 288 (350)
T ss_pred CCCeEEEcCCcceE---EEEeHHHHHHHHHHHhcCCCcCC--cccCCccceeHHHHHHHHHHHcCCCccee---------
Confidence 56665224433224 77888888888887777765444 88887778888888777766663221110
Q ss_pred CHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHHHHHh
Q 030297 98 RLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 98 ~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
.. .+++ |- -+.+.-|++||++. ||.|.+...|++..++.++|+
T Consensus 289 ----~~----------------~~~~----------Dd----p~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~ 332 (350)
T KOG1429|consen 289 ----FV----------------ENGP----------DD----PRKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRE 332 (350)
T ss_pred ----ec----------------CCCC----------CC----ccccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHH
Confidence 00 0000 00 01466799999877 999999999999999988875
No 57
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.09 E-value=0.016 Score=48.57 Aligned_cols=48 Identities=10% Similarity=-0.034 Sum_probs=39.3
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCc
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIE 84 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~ 84 (179)
++++++.+|++++.++.++ ..++.|| ..+..+|..++...+++.++++
T Consensus 200 ~~i~v~D~a~a~~~al~~~-~~~~~~~-~~~~~~sv~el~~~i~~~~~~~ 247 (324)
T TIGR03589 200 FWITLEQGVNFVLKSLERM-LGGEIFV-PKIPSMKITDLAEAMAPECPHK 247 (324)
T ss_pred eeEEHHHHHHHHHHHHhhC-CCCCEEc-cCCCcEEHHHHHHHHHhhCCee
Confidence 7889999999999999874 3578885 6677899999999999876544
No 58
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.67 E-value=0.041 Score=50.59 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhc
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFE 82 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG 82 (179)
..+.+.++++++.++..+ .+++|||+|++.+||.++-..|++.+|
T Consensus 565 ~~~~~~~~~~~~~l~~~~--~~giyni~~~~~~s~~e~a~~i~~~~~ 609 (668)
T PLN02260 565 MTVLDELLPISIEMAKRN--LRGIWNFTNPGVVSHNEILEMYKDYID 609 (668)
T ss_pred ceehhhHHHHHHHHHHhC--CCceEEecCCCcCcHHHHHHHHHHhcC
Confidence 455566676667776642 357999999999999999999999984
No 59
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.47 E-value=0.22 Score=49.34 Aligned_cols=129 Identities=15% Similarity=0.121 Sum_probs=77.3
Q ss_pred cccCCHHHHHHHHHHHhcCCCC--CCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHH
Q 030297 34 SEYSDADLIAEQEIWAAVDPNA--RNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWE 111 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a--~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~ 111 (179)
.+.+++|.+|++++.++.++.. .+..||+.++..++|.+++..|.+. |.+. ...+..+|.......
T Consensus 1214 ~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~---------~~~~~~~w~~~l~~~-- 1281 (1389)
T TIGR03443 1214 VNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDV---------EIVDYVHWRKSLERF-- 1281 (1389)
T ss_pred cccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCC---------CccCHHHHHHHHHHh--
Confidence 4788999999999999987643 3468999999999999999999764 5432 122333444311100
Q ss_pred HHHHHhCCCCCCcccchhhhhhHHhhhccC-ccccchhhHHHc--------CCCCc---cchHHHHHHHHHHHHhCCCCC
Q 030297 112 EIVRENQLQPTKLNEVAVWSYADMVMNVGA-GYSVSMNKSKEH--------GFLGF---RNSKNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 112 ~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~-~~~~d~~Kar~~--------Gf~~~---~dt~e~~~~~~~~~~~~~~iP 179 (179)
....+ ...++..+..+ |.+. +.... ...+|.+++++. |.+.. .-+.+-++++++.+++.+.||
T Consensus 1282 --~~~~~-~~~~~~~l~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1356 (1389)
T TIGR03443 1282 --VIERS-EDNALFPLLHF-VLDD-LPQSTKAPELDDTNAATSLKADAAWTGVDVSSGAGVTEEQIGIYIAYLVKVGFLP 1356 (1389)
T ss_pred --ccccC-ccchhhhHHHH-hhcc-CcccccCCCCCCHHHHHHHHhhcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 00001 12222221111 1110 11012 567788888765 33333 246788899999999888775
No 60
>PLN02503 fatty acyl-CoA reductase 2
Probab=94.93 E-value=0.025 Score=51.78 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=51.1
Q ss_pred hCCCccCCCChhhhccccccCCHHHHHHHHHHHhc-CC---CCCCCceeccCC--CcccHHHHHHHHHHHhcCc
Q 030297 17 EGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAV-DP---NARNEAFNCTNG--DVFKWKHLWKVLAEQFEIE 84 (179)
Q Consensus 17 ~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~-~p---~a~geaFNi~dg--~~~sw~~lw~~iA~~fG~~ 84 (179)
.|.---|+|+.. +..+.+.+|+++++++.|+- ++ ...+++||++++ .+++|.++-..++++|...
T Consensus 405 ~G~lr~~~~~~~---~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~ 475 (605)
T PLN02503 405 KGQLTGFLADPN---GVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKSS 475 (605)
T ss_pred ccceeEEEeCCC---eeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhC
Confidence 454333778876 66699999999999999933 22 234789999988 8899999999999998753
No 61
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=94.87 E-value=0.11 Score=43.17 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=47.3
Q ss_pred cccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCC
Q 030297 32 GFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYG 87 (179)
Q Consensus 32 ~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~ 87 (179)
...+.|++..||+++..++......+ .|++++....||-++-..|.+.+|.++..
T Consensus 178 q~gsPt~~~dlA~~i~~ll~~~~~~~-~yH~~~~g~~Swydfa~~I~~~~~~~~~v 232 (281)
T COG1091 178 QYGSPTYTEDLADAILELLEKEKEGG-VYHLVNSGECSWYEFAKAIFEEAGVDGEV 232 (281)
T ss_pred eeeCCccHHHHHHHHHHHHhccccCc-EEEEeCCCcccHHHHHHHHHHHhCCCccc
Confidence 44578999999999999888765555 99999888899999999999999988743
No 62
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=94.50 E-value=0.16 Score=43.00 Aligned_cols=97 Identities=12% Similarity=0.007 Sum_probs=72.2
Q ss_pred ccCCHHHHHHHHHHHhcCCCCC--CCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNAR--NEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEE 112 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~--geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~ 112 (179)
+.+++-.+|+.++-|....++. -.+||+.+|...|-.+|...+++..|++...+- .+.+.
T Consensus 235 dyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~-----v~~R~------------- 296 (343)
T KOG1371|consen 235 DYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKV-----VPRRN------------- 296 (343)
T ss_pred cceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccc-----cCCCC-------------
Confidence 5555555999999998866543 369999999999999999999999998866541 11000
Q ss_pred HHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHH-cCCCCccchHHHHHHHHHHHHh
Q 030297 113 IVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKE-HGFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 113 l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~-~Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
+ |. ....-+.+++.+ +||++..+.+|+.+..+.|..+
T Consensus 297 ---------g-----------dv-----~~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~ 334 (343)
T KOG1371|consen 297 ---------G-----------DV-----AFVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQ 334 (343)
T ss_pred ---------C-----------Cc-----eeeeeChHHHHHHhCCccccCHHHHHHHHHHHHhc
Confidence 0 00 044557777754 5999999999999999998764
No 63
>PLN02583 cinnamoyl-CoA reductase
Probab=93.29 E-value=0.16 Score=41.87 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=42.4
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcC
Q 030297 34 SEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEI 83 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~ 83 (179)
.+.++++.+|++++.|++++.+.| .|++++++..+|.++-+.+.+.|.-
T Consensus 217 ~~~v~V~Dva~a~~~al~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~p~ 265 (297)
T PLN02583 217 LVTVDVNFLVDAHIRAFEDVSSYG-RYLCFNHIVNTEEDAVKLAQMLSPL 265 (297)
T ss_pred cceEEHHHHHHHHHHHhcCcccCC-cEEEecCCCccHHHHHHHHHHhCCC
Confidence 468999999999999999888777 6999988888889999998888763
No 64
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=90.86 E-value=2.4 Score=35.08 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=72.6
Q ss_pred CCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHH
Q 030297 23 FPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEI 102 (179)
Q Consensus 23 FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~ 102 (179)
+-|+..+-| +.-.+..-+++++....++. -+.|-|+-|+..|-.++...-=...|....--. ...+.
T Consensus 244 ~LGNL~a~R---DWGhA~dYVEAMW~mLQ~d~--PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg-----~gv~~--- 310 (376)
T KOG1372|consen 244 ELGNLSALR---DWGHAGDYVEAMWLMLQQDS--PDDFVIATGEQHSVREFCNLAFAEIGEVLNWEG-----EGVDE--- 310 (376)
T ss_pred Eecchhhhc---ccchhHHHHHHHHHHHhcCC--CCceEEecCCcccHHHHHHHHHHhhCcEEeecc-----ccccc---
Confidence 338887666 88888999999998888753 457999999999999999987667773322111 00000
Q ss_pred HhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccchhhHHHc-CCCCccchHHHHHHHHH
Q 030297 103 MKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSMNKSKEH-GFLGFRNSKNSFVAWIG 170 (179)
Q Consensus 103 ~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~~Kar~~-Gf~~~~dt~e~~~~~~~ 170 (179)
... .+.|..--.+.. .+ |---. .+.++.|-+||++. ||+|.+...|-..++++
T Consensus 311 ~~~---------n~~g~v~V~v~~--kY-yRPtE---Vd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~ 364 (376)
T KOG1372|consen 311 VGK---------NDDGVVRVKVDP--KY-YRPTE---VDTLQGDASKAKKTLGWKPKVTFPELVKEMVA 364 (376)
T ss_pred ccc---------cCCceEEEEecc--cc-cCcch---hhhhcCChHHHHHhhCCCCccCHHHHHHHHHH
Confidence 000 000000000000 00 00000 11566799999988 99999998877776654
No 65
>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]
Probab=84.44 E-value=2.7 Score=35.44 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=54.4
Q ss_pred HHHHHHHHhHhC-CCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhc
Q 030297 7 LCVYAAICKHEG-FPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFE 82 (179)
Q Consensus 7 l~iy~s~~r~~g-~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG 82 (179)
|--|++++|..| .|| +.+.++..+ .-+++-.+|.+|+-|+.+|.+.|.+|-...-+.+...+|...+=+..-
T Consensus 222 ln~ya~~~rk~~~~pL-~~~GekT~K---~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP~~yql~eLvd~my~~~~ 294 (391)
T KOG2865|consen 222 LNYYASFWRKFGFLPL-IGKGEKTVK---QPVYVVDVAAAIVNAVKDPDSMGKTYEFVGPDRYQLSELVDIMYDMAR 294 (391)
T ss_pred HHHHHHHHHhcCceee-ecCCcceee---ccEEEehHHHHHHHhccCccccCceeeecCCchhhHHHHHHHHHHHHh
Confidence 456899998765 333 334555555 777777799999999999999999999998788888887766544433
No 66
>PRK12320 hypothetical protein; Provisional
Probab=81.65 E-value=2.1 Score=40.05 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=37.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHH
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQ 80 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~ 80 (179)
+++++.++++++.++..+. +.+|||++++.+|..++...|+..
T Consensus 160 vIyVdDvv~alv~al~~~~--~GiyNIG~~~~~Si~el~~~i~~~ 202 (699)
T PRK12320 160 VLHLDDLVRFLVLALNTDR--NGVVDLATPDTTNVVTAWRLLRSV 202 (699)
T ss_pred EEEHHHHHHHHHHHHhCCC--CCEEEEeCCCeeEHHHHHHHHHHh
Confidence 4699999999999987643 349999999999999999888776
No 67
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.73 E-value=5.5 Score=31.19 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=28.9
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~ 67 (179)
..++.+.+|+++++++..+...|+.|||.+|..
T Consensus 214 ~~~~~~dva~~~~~~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 214 KILDPEEVAEFVAAILKIESITGQVFVLDSGES 246 (252)
T ss_pred CCCCHHHHHHHHHHHhCccccCCCeEEecCCee
Confidence 468899999999999988777899999998864
No 68
>PRK07806 short chain dehydrogenase; Provisional
Probab=69.00 E-value=5.7 Score=31.15 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=30.1
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcc
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVF 68 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~ 68 (179)
.+.+.+.+|+++++++..+...|+.|||.+|+..
T Consensus 212 ~~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~~~ 245 (248)
T PRK07806 212 KLYTVSEFAAEVARAVTAPVPSGHIEYVGGADYF 245 (248)
T ss_pred ccCCHHHHHHHHHHHhhccccCccEEEecCccce
Confidence 5789999999999999987778999999988764
No 69
>PRK05875 short chain dehydrogenase; Provisional
Probab=67.39 E-value=10 Score=30.31 Aligned_cols=49 Identities=8% Similarity=0.222 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCC--CCceeccCCCcc----cHHHHHHHHHHHhcCc
Q 030297 36 YSDADLIAEQEIWAAVDPNAR--NEAFNCTNGDVF----KWKHLWKVLAEQFEIE 84 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~--geaFNi~dg~~~----sw~~lw~~iA~~fG~~ 84 (179)
..+.+.+|+++.+++.++... |+.+|+..|... +-.++...+...-|+.
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (276)
T PRK05875 219 VGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADGLR 273 (276)
T ss_pred CcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHHHh
Confidence 346788999999999876544 899999988775 6666666666554443
No 70
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=67.15 E-value=9.2 Score=30.38 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=36.6
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccC---CCcccHHHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTN---GDVFKWKHLWKVLAE 79 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~d---g~~~sw~~lw~~iA~ 79 (179)
..++.+.+|+++.+++..+...+.++.|++ +-..|+.++...||+
T Consensus 203 ~~i~~~dvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 203 GSISRDQVAEVAVEALLCPESSYKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred CcccHHHHHHHHHHHhcChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence 357889999999999999888888888885 333888888888774
No 71
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=66.66 E-value=4.7 Score=31.59 Aligned_cols=49 Identities=10% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHhcCCCCC--CCceeccCCCcccHHHHHHHHHHHhcCccC
Q 030297 37 SDADLIAEQEIWAAVDPNAR--NEAFNCTNGDVFKWKHLWKVLAEQFEIENY 86 (179)
Q Consensus 37 ~~~~~la~~~i~a~~~p~a~--geaFNi~dg~~~sw~~lw~~iA~~fG~~~~ 86 (179)
++.+.+|++...++.+|... |+.++++ |+..|+.++-..+.+.+|.+..
T Consensus 180 ~~~~Dvg~~va~il~~p~~~~~~~~~~~~-~~~~t~~eia~~~s~~~G~~v~ 230 (233)
T PF05368_consen 180 TDTRDVGRAVAAILLDPEKHNNGKTIFLA-GETLTYNEIAAILSKVLGKKVK 230 (233)
T ss_dssp EHHHHHHHHHHHHHHSGGGTTEEEEEEEG-GGEEEHHHHHHHHHHHHTSEEE
T ss_pred ccHHHHHHHHHHHHcChHHhcCCEEEEeC-CCCCCHHHHHHHHHHHHCCccE
Confidence 68889999999999998654 6888886 4889999999999999998753
No 72
>PRK07074 short chain dehydrogenase; Provisional
Probab=66.41 E-value=9.9 Score=29.98 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=37.1
Q ss_pred ccccCCHHHHHHHHHHHhcCC--CCCCCceeccCCCcccHHHHHHHHH
Q 030297 33 FSEYSDADLIAEQEIWAAVDP--NARNEAFNCTNGDVFKWKHLWKVLA 78 (179)
Q Consensus 33 ~~~~~~~~~la~~~i~a~~~p--~a~geaFNi~dg~~~sw~~lw~~iA 78 (179)
..+..+++.+++++++++.++ ...|+.|++.+|...+..++...+.
T Consensus 206 ~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~ 253 (257)
T PRK07074 206 LQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLT 253 (257)
T ss_pred CCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhc
Confidence 456789999999999999753 3458999999999998888776653
No 73
>PRK09135 pteridine reductase; Provisional
Probab=64.81 E-value=7.7 Score=30.18 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHhcCC-CCCCCceeccCCCccc
Q 030297 36 YSDADLIAEQEIWAAVDP-NARNEAFNCTNGDVFK 69 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p-~a~geaFNi~dg~~~s 69 (179)
..+.+.+|+++++++... ...|+.|||.+|...+
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 214 IGTPEDIAEAVRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred CcCHHHHHHHHHHHcCccccccCcEEEECCCeecc
Confidence 456889999998887643 3568999999998764
No 74
>PRK09134 short chain dehydrogenase; Provisional
Probab=61.94 E-value=9.2 Score=30.29 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHH
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWK 71 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~ 71 (179)
..+.+.+|+++++++.++...|+.|++..|...+|.
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 214 GSTPEEIAAAVRYLLDAPSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred CcCHHHHHHHHHHHhcCCCcCCCEEEECCCeecccc
Confidence 467889999999999988888999999998887775
No 75
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=59.75 E-value=15 Score=22.85 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=20.0
Q ss_pred hhHHHcCCCCcc---------chHHHHHHHHHHHHhC
Q 030297 148 NKSKEHGFLGFR---------NSKNSFVAWIGRLKSH 175 (179)
Q Consensus 148 ~Kar~~Gf~~~~---------dt~e~~~~~~~~~~~~ 175 (179)
+++|+.||++.+ +..+|+.++++-+|+.
T Consensus 7 ~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~~lr~~ 43 (55)
T PF07582_consen 7 SALREIGYDGWLSIEHEDALMDPEEGAREAAAFLRKL 43 (55)
T ss_dssp HHHHHTT--SEEEE---STTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCceEEEEeecCCCCHHHHHHHHHHHHHHh
Confidence 456677777654 6788999999988876
No 76
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=59.16 E-value=2.2 Score=32.15 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=14.3
Q ss_pred HHHhHhCCCccCCCChh
Q 030297 12 AICKHEGFPLLFPGTKE 28 (179)
Q Consensus 12 s~~r~~g~pl~FPG~~~ 28 (179)
|+||+-|.|||+ |+.+
T Consensus 22 AVYRGNGIPLPw-GNMr 37 (178)
T PF12268_consen 22 AVYRGNGIPLPW-GNMR 37 (178)
T ss_pred EEEecCCCcCCc-cCce
Confidence 689999999999 8875
No 77
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=57.54 E-value=12 Score=29.59 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHHhcCCC--CCCCceeccCCCccc
Q 030297 35 EYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDVFK 69 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~~s 69 (179)
...+.+.+|+++++++.++. ..|+.|||..|...|
T Consensus 221 ~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 221 RMGVPDDLTGMALFLASADADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred CccCHHHHHHHHHHHhCcccccccCcEEeecCCEeCC
Confidence 56688899999999998653 348999998876543
No 78
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.56 E-value=17 Score=27.99 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHhcCCC--CCCCceeccCCCcc
Q 030297 36 YSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDVF 68 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~~ 68 (179)
.++.+.+|+++.+++.++. ..|+.|+|++|..+
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 214 SGTPEDIARAVAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred CcCHHHHHHHHHHHhCccccCcCCCEEEeCCCEee
Confidence 5678899999999998753 45899999988654
No 79
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=50.43 E-value=21 Score=18.50 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 030297 162 KNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 162 ~e~~~~~~~~~~~~~~iP 179 (179)
.+...+.+++|++.|+-|
T Consensus 17 ~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 17 PDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 345678889999999887
No 80
>PRK08263 short chain dehydrogenase; Provisional
Probab=48.19 E-value=21 Score=28.61 Aligned_cols=47 Identities=17% Similarity=-0.049 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcC
Q 030297 37 SDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEI 83 (179)
Q Consensus 37 ~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~ 83 (179)
.+.+.+|++++.++.++...++.++.+....+++.++-..|++|-+.
T Consensus 218 ~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (275)
T PRK08263 218 GDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATWEEW 264 (275)
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999988777775555555779999999988887443
No 81
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=47.85 E-value=18 Score=23.21 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCcc
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIEN 85 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~ 85 (179)
-.+++.|++-++...+...+..|+. . +.+.-+++|..||+-|++|.
T Consensus 16 ~~~~~~la~dhvL~~LGgrT~~eAL--~--~G~dpr~VW~AlC~~~dVP~ 61 (63)
T PF11248_consen 16 PAYGRSLARDHVLSELGGRTAAEAL--E--AGVDPRDVWRALCDAFDVPE 61 (63)
T ss_pred chhHHHHHHhcchhhcCCcCHHHHH--H--cCCCHHHHHHHHHHHcCCCC
Confidence 3456667777777777666666654 2 33455799999999998874
No 82
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.84 E-value=23 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=25.8
Q ss_pred cccCCHHHHHHHHHHHhcCCC--CCCCceeccCC
Q 030297 34 SEYSDADLIAEQEIWAAVDPN--ARNEAFNCTNG 65 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg 65 (179)
...++++.+|+++.+++..+. ..|+.||+.+|
T Consensus 221 ~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 221 KRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred cccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 367899999999999987643 34899999877
No 83
>PF14044 NETI: NETI protein
Probab=46.32 E-value=16 Score=22.94 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 030297 162 KNSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 162 ~e~~~~~~~~~~~~~~iP 179 (179)
.|++.+.+++|+++|+.|
T Consensus 7 nETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 7 NETISDCLARMKKEGYMP 24 (57)
T ss_pred CCcHHHHHHHHHHcCCCc
Confidence 467888899999999987
No 84
>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]
Probab=45.69 E-value=58 Score=26.81 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=49.4
Q ss_pred hhccccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCC
Q 030297 29 TWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGF 88 (179)
Q Consensus 29 ~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p 88 (179)
+=+..+..+.++.||..+-+|.+.|..+| .-|-.--+++|-.++-..+++.++.+.-.|
T Consensus 207 sG~Q~fpWIHv~DL~~li~~ale~~~v~G-ViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~p 265 (315)
T KOG3019|consen 207 SGQQWFPWIHVDDLVNLIYEALENPSVKG-VINGVAPNPVRNGEFCQQLGSALSRPSWLP 265 (315)
T ss_pred CCCeeeeeeehHHHHHHHHHHHhcCCCCc-eecccCCCccchHHHHHHHHHHhCCCcccC
Confidence 33455588889999999999999988777 566666778999999999999999998776
No 85
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.20 E-value=28 Score=27.27 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=26.6
Q ss_pred cccCCHHHHHHHHHHHhcCCCC--CCCceeccCCC
Q 030297 34 SEYSDADLIAEQEIWAAVDPNA--RNEAFNCTNGD 66 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~a--~geaFNi~dg~ 66 (179)
.++++.+.+|+++++++..+.+ .|+.|++..|.
T Consensus 225 ~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~ 259 (262)
T PRK13394 225 GVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGW 259 (262)
T ss_pred CCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCce
Confidence 3678999999999999986543 38999998774
No 86
>PRK06482 short chain dehydrogenase; Provisional
Probab=42.94 E-value=28 Score=27.78 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHh
Q 030297 37 SDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQF 81 (179)
Q Consensus 37 ~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~f 81 (179)
.+.+.++++++.++..+.. +..||+.+|+..+-.++...+.+..
T Consensus 219 ~d~~~~~~a~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (276)
T PRK06482 219 GDPQKMVQAMIASADQTPA-PRRLTLGSDAYASIRAALSERLAAL 262 (276)
T ss_pred CCHHHHHHHHHHHHcCCCC-CeEEecChHHHHHHHHHHHHHHHHH
Confidence 5789999999999986644 4569999988775555555444433
No 87
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=41.07 E-value=32 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=26.7
Q ss_pred ccCCHHHHHHHHHHHhcCCC--CCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~ 67 (179)
+..+.+.+|+++++++.++. ..|+.||+.+|..
T Consensus 219 ~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 219 RFVTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred cCcCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 57889999999999998753 3589999997753
No 88
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=38.72 E-value=80 Score=24.71 Aligned_cols=56 Identities=13% Similarity=-0.040 Sum_probs=50.6
Q ss_pred ccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCC
Q 030297 33 FSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGF 88 (179)
Q Consensus 33 ~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p 88 (179)
.++..+.+.+++....+...|...++.|.++..+..+..++-..|....|.+....
T Consensus 170 ~~~~i~~~d~a~~~~~~l~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~~ 225 (275)
T COG0702 170 RLSPIAVDDVAEALAAALDAPATAGRTYELAGPEALTLAELASGLDYTIGRPVGLI 225 (275)
T ss_pred ceeeeEHHHHHHHHHHHhcCCcccCcEEEccCCceecHHHHHHHHHHHhCCcceee
Confidence 45888999999999999999888899999997789999999999999999998764
No 89
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=38.36 E-value=14 Score=31.61 Aligned_cols=89 Identities=16% Similarity=0.383 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhhHHhhhccCccccch
Q 030297 68 FKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYADMVMNVGAGYSVSM 147 (179)
Q Consensus 68 ~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~d~~~~~~~~~~~d~ 147 (179)
..|++ |++-=+|+-+.+.-.+ + -..+.+++|.+.-+++|+....+.+.- .+ .-.+--
T Consensus 16 WdW~r-WEreIDWMALnGiNl~-------L----a~~GqEavw~~v~~~~G~t~~ei~~ff--------~G---PA~laW 72 (333)
T PF05089_consen 16 WDWER-WEREIDWMALNGINLP-------L----AIVGQEAVWQRVLRELGLTDEEIREFF--------TG---PAFLAW 72 (333)
T ss_dssp --HHH-HHHHHHHHHHTT--EE-------E------TTHHHHHHHHHGGGT--HHHHHHHS-------------TT-HHH
T ss_pred cCHHH-HHHHHHHHHHhCCchh-------h----hhhHHHHHHHHHHHHcCCCHHHHHHHc--------CC---HHHHHH
Confidence 44543 7787788877765321 1 345788999999999999887764421 11 111111
Q ss_pred hhHHHc-CCCCcc-----chH-HHHHHHHHHHHhCCCCC
Q 030297 148 NKSKEH-GFLGFR-----NSK-NSFVAWIGRLKSHRIVP 179 (179)
Q Consensus 148 ~Kar~~-Gf~~~~-----dt~-e~~~~~~~~~~~~~~iP 179 (179)
.+.--. ||-++. +-. +-=++.++|||+.||.|
T Consensus 73 ~rMgNl~gwgGPLp~~w~~~q~~Lq~kIl~RmreLGm~P 111 (333)
T PF05089_consen 73 WRMGNLQGWGGPLPQSWIDQQAELQKKILDRMRELGMTP 111 (333)
T ss_dssp HHTTS--STT----TTHHHHHHHHHHHHHHHHHHHT-EE
T ss_pred HHhCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 111122 555554 122 22356889999999876
No 90
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.33 E-value=42 Score=26.30 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHHhcCC--CCCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVDP--NARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p--~a~geaFNi~dg~~ 67 (179)
..++.+.+|+++..++... ...|+.|||++|..
T Consensus 228 ~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 228 RMVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred CCCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 4788999999998887643 34589999998864
No 91
>PRK07774 short chain dehydrogenase; Provisional
Probab=36.39 E-value=38 Score=26.34 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHHhcCCC--CCCCceeccCCCcc
Q 030297 36 YSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDVF 68 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~~ 68 (179)
..+.+.+|+++++++..+. ..||.||+..|...
T Consensus 214 ~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~~~ 248 (250)
T PRK07774 214 MGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQII 248 (250)
T ss_pred CcCHHHHHHHHHHHhChhhhCcCCCEEEECCCeec
Confidence 3467889999999988643 46899999988765
No 92
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=35.00 E-value=43 Score=18.38 Aligned_cols=18 Identities=6% Similarity=0.350 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhCCCC
Q 030297 161 SKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 161 t~e~~~~~~~~~~~~~~i 178 (179)
|.|..-+.+..|++.|+|
T Consensus 15 t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 15 TRETVSRILKKLERQGLI 32 (32)
T ss_dssp -HHHHHHHHHHHHHTTSE
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 567788888899998886
No 93
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=31.94 E-value=46 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHHHHhcCccCCCCCCCCC--------ccCCHHHHH----hccHHHHHHHHHHhCCCCCC
Q 030297 64 NGDVFKWKHLWKVLAEQFEIENYGFGDEKGS--------ERVRLEEIM----KGKESVWEEIVRENQLQPTK 123 (179)
Q Consensus 64 dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~--------~~~~l~~~~----~~~~~~w~~l~~~~gL~~~~ 123 (179)
||++..|..+|...-...+-.....+...-. ....+...+ ...+.+|+.|.++||-+...
T Consensus 2 ~G~~~~~~~F~~~F~~~v~~n~~~~d~~K~~~L~~~L~G~A~~~i~~~~~~~~~Y~~a~~~L~~~yg~~~~i 73 (145)
T PF03564_consen 2 DGDPSEWPEFIDQFDSLVHENPDLSDIEKLNYLRSCLKGEAKELIRGLPLSEENYEEAWELLEERYGNPRRI 73 (145)
T ss_pred CCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHHHHHcccccchhhHHHHHHHHHHhCCchHH
Confidence 6899999999999888877755544211100 011111111 12267888888888755543
No 94
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=31.08 E-value=59 Score=24.89 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=25.2
Q ss_pred ccCCHHHHHHHHHHHhcC--CCCCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVD--PNARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~--p~a~geaFNi~dg~~ 67 (179)
..++.+.+|+++.+++.. +...|+.|+|++|..
T Consensus 211 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 245 (246)
T PRK05653 211 RLGQPEEVANAVAFLASDAASYITGQVIPVNGGMY 245 (246)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEeCCCee
Confidence 345668899999999874 334589999998864
No 95
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=30.99 E-value=86 Score=28.12 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=41.6
Q ss_pred CCCChhhhccccccCCHHHHHHHHHHHhc-CCCCCC----CceeccCC--CcccHHHHHHHHHHHhc
Q 030297 23 FPGTKETWEGFSEYSDADLIAEQEIWAAV-DPNARN----EAFNCTNG--DVFKWKHLWKVLAEQFE 82 (179)
Q Consensus 23 FPG~~~~~~~~~~~~~~~~la~~~i~a~~-~p~a~g----eaFNi~dg--~~~sw~~lw~~iA~~fG 82 (179)
|.++.. +..+.+-+|.++.+++-++- +..... .+||++.+ .++||+++-....+++-
T Consensus 269 ~~~d~~---~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 269 FLVDPK---AVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred EEEccc---cccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHHHHhcc
Confidence 444444 55689999999999996652 222222 49999954 45999999999988886
No 96
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=30.53 E-value=35 Score=25.30 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhHhCCCcc---CCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceec--cC-CCcccHHHHHHHHH
Q 030297 5 GTLCVYAAICKHEGFPLL---FPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNC--TN-GDVFKWKHLWKVLA 78 (179)
Q Consensus 5 ~~l~iy~s~~r~~g~pl~---FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi--~d-g~~~sw~~lw~~iA 78 (179)
.--.||..|+|.+|+++. |||..-.+- . . ++.++| .+ |..++..++=..|.
T Consensus 69 ~L~ily~~va~rlGl~~~~v~~Pgh~l~r~---~-------------------~-~~~~~iDpf~~G~~l~~~~l~~~l~ 125 (152)
T PF13369_consen 69 SLAILYLEVARRLGLPAEPVNFPGHFLVRV---R-------------------S-DGEFYIDPFNGGRLLSREELERLLS 125 (152)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCEEEEEE---e-------------------c-CCcEEEccCCCCccCCHHHHHHHHH
Confidence 345689999999998765 999764322 1 1 111444 46 78899999955555
Q ss_pred HHhcC
Q 030297 79 EQFEI 83 (179)
Q Consensus 79 ~~fG~ 83 (179)
...|-
T Consensus 126 ~~~~~ 130 (152)
T PF13369_consen 126 RMGGP 130 (152)
T ss_pred hccCc
Confidence 55543
No 97
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=30.08 E-value=2.4e+02 Score=21.63 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCCCCCccc
Q 030297 108 SVWEEIVRENQLQPTKLNE 126 (179)
Q Consensus 108 ~~w~~l~~~~gL~~~~l~~ 126 (179)
..|.+|+-+.|+.++..++
T Consensus 71 kTW~~La~~LGVepp~~ek 89 (175)
T PF09441_consen 71 KTWAQLALELGVEPPDPEK 89 (175)
T ss_pred hHHHHHHHHhCCCCCCccc
Confidence 4678888888887777544
No 98
>PF07904 Eaf7: Chromatin modification-related protein EAF7; InterPro: IPR012423 The Saccharomyces cerevisiae (Baker's yeast) member of this family P53911 from SWISSPROT is part of NuA4, the only essential histone acetyltransferase complex in S. cerevisiae involved in global histone acetylation []. ; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0043189 H4/H2A histone acetyltransferase complex
Probab=29.98 E-value=43 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=24.6
Q ss_pred ceeccCCCcccHHHHHHHHHHHhcCccCC
Q 030297 59 AFNCTNGDVFKWKHLWKVLAEQFEIENYG 87 (179)
Q Consensus 59 aFNi~dg~~~sw~~lw~~iA~~fG~~~~~ 87 (179)
.|....+..+|-.++|..|.++++++.--
T Consensus 35 ~~~~~~~~~~t~~~IW~kL~~~YdL~~ld 63 (91)
T PF07904_consen 35 GFDPKLNKHFTIDDIWKKLRTLYDLEALD 63 (91)
T ss_pred ccCCccCCcCCHHHHHHHHHHhcCHHHhc
Confidence 56666788899999999999999988653
No 99
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.35 E-value=82 Score=15.79 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCCCC
Q 030297 164 SFVAWIGRLKSHRIVP 179 (179)
Q Consensus 164 ~~~~~~~~~~~~~~iP 179 (179)
.-.+.|++|++.|+-|
T Consensus 18 ~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 18 EALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 3456777888888776
No 100
>PRK07041 short chain dehydrogenase; Provisional
Probab=26.30 E-value=85 Score=24.00 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCceeccCCCc
Q 030297 37 SDADLIAEQEIWAAVDPNARNEAFNCTNGDV 67 (179)
Q Consensus 37 ~~~~~la~~~i~a~~~p~a~geaFNi~dg~~ 67 (179)
...+.+|+++.+++..+...|+.|+|..|..
T Consensus 198 ~~~~dva~~~~~l~~~~~~~G~~~~v~gg~~ 228 (230)
T PRK07041 198 GQPEDVANAILFLAANGFTTGSTVLVDGGHA 228 (230)
T ss_pred cCHHHHHHHHHHHhcCCCcCCcEEEeCCCee
Confidence 4578899999999887666689999988754
No 101
>CHL00082 psbZ photosystem II protein Z
Probab=25.77 E-value=53 Score=21.00 Aligned_cols=36 Identities=28% Similarity=0.539 Sum_probs=26.2
Q ss_pred CchHHHHHHHHHHHhH----hCCCccCCCChhhhccccccC
Q 030297 1 MNIVGTLCVYAAICKH----EGFPLLFPGTKETWEGFSEYS 37 (179)
Q Consensus 1 mn~~~~l~iy~s~~r~----~g~pl~FPG~~~~~~~~~~~~ 37 (179)
|.++..+++.+-+--. .|.|+.| .++..|..-.+..
T Consensus 1 M~i~fQl~v~aLi~~Sf~LVVgVPV~~-Asp~~W~~sK~~v 40 (62)
T CHL00082 1 MTIAFQLAVFALIATSFLLVIGVPVVF-ASPDGWSSNKNVV 40 (62)
T ss_pred CeeHHHHHHHHHHHHHHHHHheeeeEE-ECCCcchhhccee
Confidence 6677788887777653 4999999 9999887433333
No 102
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=25.50 E-value=73 Score=24.96 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.6
Q ss_pred ccCCHHHHHHHHHHHhcCCC--CCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~ 67 (179)
...+.+.+++++.+++.+.. ..|+.|||.+|..
T Consensus 223 ~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 223 RGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred CCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 45678889999998887543 3589999998764
No 103
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=25.41 E-value=86 Score=24.29 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=25.9
Q ss_pred cccCCHHHHHHHHHHHhcCCC-CCCCceeccCCC
Q 030297 34 SEYSDADLIAEQEIWAAVDPN-ARNEAFNCTNGD 66 (179)
Q Consensus 34 ~~~~~~~~la~~~i~a~~~p~-a~geaFNi~dg~ 66 (179)
-.....+.+|+++++++.... ..||.||+..|.
T Consensus 212 ~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 212 KRFGQADEIAKGVVYLCRDGAYITGQQLNINGGL 245 (247)
T ss_pred CCCcCHHHHHHHHHHHcCcccCccCCEEEeCCCc
Confidence 356789999999999987543 358999998773
No 104
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=24.94 E-value=1.6e+02 Score=17.71 Aligned_cols=42 Identities=10% Similarity=-0.042 Sum_probs=31.9
Q ss_pred ccccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccC
Q 030297 33 FSEYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENY 86 (179)
Q Consensus 33 ~~~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~ 86 (179)
+++..+...|++.+...+.. ..|++...|..+|++.+|+.-.
T Consensus 4 f~~~~~~~~L~~~i~~Iv~~------------EgPI~~~~L~~Ri~~a~G~~R~ 45 (52)
T PF11784_consen 4 FYHPEYRPQLARMIRQIVEV------------EGPIHEDELARRIARAWGLSRA 45 (52)
T ss_pred hhhhhHHHHHHHHHHHHHHH------------cCCccHHHHHHHHHHHcCcccc
Confidence 34556667777777776665 3689999999999999998743
No 105
>PRK06914 short chain dehydrogenase; Provisional
Probab=24.67 E-value=77 Score=25.19 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHH
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWK 71 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~ 71 (179)
..+.+.+|+++++++.+++.. ..||+.++..++..
T Consensus 226 ~~~~~dva~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (280)
T PRK06914 226 FGNPIDVANLIVEIAESKRPK-LRYPIGKGVKLMIL 260 (280)
T ss_pred cCCHHHHHHHHHHHHcCCCCC-cccccCCchHHHHH
Confidence 468899999999999987765 57999987776543
No 106
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.16 E-value=97 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHhcC--CCCCCCceeccCCC
Q 030297 36 YSDADLIAEQEIWAAVD--PNARNEAFNCTNGD 66 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~--p~a~geaFNi~dg~ 66 (179)
..+.+.+|+++.+++.. +...||.|||.+|.
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEAAYITGQTLHVNGGM 245 (248)
T ss_pred CcCHHHHHHHHHHHcCcccCCccccEEEecCCc
Confidence 46788999999888765 34458999998663
No 107
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.11 E-value=73 Score=21.93 Aligned_cols=19 Identities=16% Similarity=0.532 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCCCCccc
Q 030297 108 SVWEEIVRENQLQPTKLNE 126 (179)
Q Consensus 108 ~~w~~l~~~~gL~~~~l~~ 126 (179)
..|++++.+.||.++.+..
T Consensus 20 ~~Wk~laR~LGLse~~I~~ 38 (96)
T cd08315 20 DSWNRLMRQLGLSENEIDV 38 (96)
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 6799999999999988854
No 108
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=23.84 E-value=1e+02 Score=23.51 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHhcCC--CCCCCceeccCC
Q 030297 36 YSDADLIAEQEIWAAVDP--NARNEAFNCTNG 65 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p--~a~geaFNi~dg 65 (179)
..+.+.+|+++++++..+ ...|+.||+..|
T Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 206 FGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred CcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 457888999999888654 346899999655
No 109
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.66 E-value=1.1e+02 Score=23.60 Aligned_cols=32 Identities=13% Similarity=0.275 Sum_probs=25.0
Q ss_pred ccCCHHHHHHHHHHHhcCCCC--CCCceeccCCC
Q 030297 35 EYSDADLIAEQEIWAAVDPNA--RNEAFNCTNGD 66 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a--~geaFNi~dg~ 66 (179)
...+.+.+|+++++++.++.. .||.+++.+|-
T Consensus 209 ~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 209 RFAEVDDVAAPILFLLSDAASMVSGVSLPVDGGY 242 (245)
T ss_pred CCCCHHHHHHHHHHHcCcccCCccCcEEeECCCc
Confidence 457889999999999987643 38988887664
No 110
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=23.28 E-value=2.8e+02 Score=21.85 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=65.1
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCceeccCCCcccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHH
Q 030297 35 EYSDADLIAEQEIWAAVDPNARNEAFNCTNGDVFKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIV 114 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a~geaFNi~dg~~~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~ 114 (179)
+++..++..........-|.+.| .-|-..+...+=.+.-..+.+.+.-.+-.+-|... .+. ..-.+++
T Consensus 70 ~~~~~~i~~~l~~al~~vp~a~G-vnNhmGS~~T~~~~~m~~vl~~l~~~gl~FvDS~T-~~~----------s~a~~~A 137 (213)
T PF04748_consen 70 GMSEEEIRKRLEAALARVPGAVG-VNNHMGSRFTSDREAMRWVLEVLKERGLFFVDSRT-TPR----------SVAPQVA 137 (213)
T ss_dssp TS-HHHHHHHHHHHHCCSTT-SE-EEEEE-CCHHC-HHHHHHHHHHHHHTT-EEEE-S---TT-----------SHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCcEE-EecCCCccccCCHHHHHHHHHHHHHcCCEEEeCCC-Ccc----------cHHHHHH
Confidence 45555555554444445688887 56666555556666666677777766665532111 222 2234666
Q ss_pred HHhCCCCC---Cc-ccchhhhhhHHhhhccCccccchhhHHHcCC-----CCccchHHHHHHHHHHHHhCCC
Q 030297 115 RENQLQPT---KL-NEVAVWSYADMVMNVGAGYSVSMNKSKEHGF-----LGFRNSKNSFVAWIGRLKSHRI 177 (179)
Q Consensus 115 ~~~gL~~~---~l-~~~~~~~f~d~~~~~~~~~~~d~~Kar~~Gf-----~~~~dt~e~~~~~~~~~~~~~~ 177 (179)
+++|++-. .+ +...+-...+. .+.-=...||+.|+ ++...|.+.+.++...+++.|+
T Consensus 138 ~~~gvp~~~rdvfLD~~~~~~~I~~------ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 138 KELGVPAARRDVFLDNDQDEAAIRR------QLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp HHCT--EEE-SEETTST-SHHHHHH------HHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred HHcCCCEEeeceecCCCCCHHHHHH------HHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 77776632 22 22122222222 22223456777777 5666899999999999998864
No 111
>PRK12746 short chain dehydrogenase; Provisional
Probab=23.26 E-value=99 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=23.9
Q ss_pred ccCCHHHHHHHHHHHhcCCCC--CCCceeccCC
Q 030297 35 EYSDADLIAEQEIWAAVDPNA--RNEAFNCTNG 65 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~a--~geaFNi~dg 65 (179)
...+.+.+|+++.+++.++.. .|+.|||..|
T Consensus 219 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 219 RIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred CCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 445788999999988876543 4899999755
No 112
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=23.25 E-value=1.1e+02 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=24.3
Q ss_pred hhhHHHc--CCCCccchHHHHHHHHHHHHh
Q 030297 147 MNKSKEH--GFLGFRNSKNSFVAWIGRLKS 174 (179)
Q Consensus 147 ~~Kar~~--Gf~~~~dt~e~~~~~~~~~~~ 174 (179)
+.++|+. +|+++.+-..+|+.+++.+++
T Consensus 174 l~~i~~lTn~yt~P~~AC~t~r~ly~~L~~ 203 (224)
T PRK13276 174 LVKMSELTSSYEPPIEACGTWRLVYQRLKA 203 (224)
T ss_pred HHHHHHHhCCCCCCcchhHHHHHHHHHHHH
Confidence 4678888 999999999999999888765
No 113
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=23.03 E-value=1.2e+02 Score=20.39 Aligned_cols=26 Identities=12% Similarity=0.380 Sum_probs=23.2
Q ss_pred ceeccCCCcccHHHHHHHHHHHhcCc
Q 030297 59 AFNCTNGDVFKWKHLWKVLAEQFEIE 84 (179)
Q Consensus 59 aFNi~dg~~~sw~~lw~~iA~~fG~~ 84 (179)
.|.+.+....||.+|-..|++.|++.
T Consensus 13 rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 13 SFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 57777777899999999999999999
No 114
>PRK02576 psbZ photosystem II reaction center protein Z; Provisional
Probab=22.61 E-value=65 Score=20.60 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=26.8
Q ss_pred CchHHHHHHHHHHHhH----hCCCccCCCChhhhccccccCC
Q 030297 1 MNIVGTLCVYAAICKH----EGFPLLFPGTKETWEGFSEYSD 38 (179)
Q Consensus 1 mn~~~~l~iy~s~~r~----~g~pl~FPG~~~~~~~~~~~~~ 38 (179)
|.++..+++.+-+--. .|.|+.| .++..|..-.+...
T Consensus 1 Mti~fQl~v~aLi~~SfiLVVgVPV~~-Asp~gW~~sK~~v~ 41 (62)
T PRK02576 1 MTILFQLALLALVVMSFVLVVGVPVAY-ASPQNWGQSKRLIL 41 (62)
T ss_pred CeeHHHHHHHHHHHHHHHHHheeeeEE-ECCCccccccceee
Confidence 6677788888777653 4999999 99998964444433
No 115
>COG5446 Predicted integral membrane protein [Function unknown]
Probab=21.91 E-value=94 Score=24.49 Aligned_cols=49 Identities=24% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHHHHHh--HhCCCccCCCChhhhccccccCCHHHHHHHHHHHhcCCCCCCCceecc
Q 030297 5 GTLCVYAAICK--HEGFPLLFPGTKETWEGFSEYSDADLIAEQEIWAAVDPNARNEAFNCT 63 (179)
Q Consensus 5 ~~l~iy~s~~r--~~g~pl~FPG~~~~~~~~~~~~~~~~la~~~i~a~~~p~a~geaFNi~ 63 (179)
-.++=|+++|= .+|+|-..||++. +|+..|.++|.++--.+....+.+.
T Consensus 110 WGlAGfaa~~laP~lGLpPELP~~pA----------AdL~qRQiWWiATv~ata~Gi~Ll~ 160 (233)
T COG5446 110 WGLAGFAAVALAPALGLPPELPAMPA----------ADLAQRQIWWIATVAATALGIALLA 160 (233)
T ss_pred HHHHHHHHHHhhhccCCCCCCCCCcH----------HHHHHHHHHHHHHHHHhhhchhhhh
Confidence 35667888875 6789988999986 6889999999999665555566666
No 116
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=21.84 E-value=3.6e+02 Score=20.37 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHhcCccCCCCCCCCCccCCHHHHHhccHHHHHHHHHHhCCCCCCcccchhhhhh------HHhhhccC
Q 030297 68 FKWKHLWKVLAEQFEIENYGFGDEKGSERVRLEEIMKGKESVWEEIVRENQLQPTKLNEVAVWSYA------DMVMNVGA 141 (179)
Q Consensus 68 ~sw~~lw~~iA~~fG~~~~~p~~~~~~~~~~l~~~~~~~~~~w~~l~~~~gL~~~~l~~~~~~~f~------d~~~~~~~ 141 (179)
+.-..|...+|++|....... . ..|..+++.---++.+-.+ ..|.|. -.++.
T Consensus 7 Vpa~~~I~~~A~~LK~~~ki~------~------------P~W~~~vKTg~~kE~~P~~-~DW~Y~R~AsIlR~vY~--- 64 (150)
T PRK09333 7 VPADLLIERLAEYLKNVDEIK------P------------PEWAAFVKTGVHKERPPEQ-EDWWYVRAASILRKVYI--- 64 (150)
T ss_pred CCHHHHHHHHHHHHHhcCCcC------C------------CcchhhhcccccccCCCCC-CchHHHHHHHHHHHHHH---
Confidence 455678888999888443321 0 1233333332222222222 345442 22222
Q ss_pred ccccchhhHHHc-CC------CCcc---chHHHHHHHHHHHHhCCCC
Q 030297 142 GYSVSMNKSKEH-GF------LGFR---NSKNSFVAWIGRLKSHRIV 178 (179)
Q Consensus 142 ~~~~d~~Kar~~-Gf------~~~~---dt~e~~~~~~~~~~~~~~i 178 (179)
+-.+-+.++|+. |= .|.. .+..-++..++.|.++|+|
T Consensus 65 ~gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glV 111 (150)
T PRK09333 65 DGPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLV 111 (150)
T ss_pred cCCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCe
Confidence 335556666655 44 3333 3445578888888888876
No 117
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=21.77 E-value=60 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHh-----HhCCCccCCCCh
Q 030297 1 MNIVGTLCVYAAICK-----HEGFPLLFPGTK 27 (179)
Q Consensus 1 mn~~~~l~iy~s~~r-----~~g~pl~FPG~~ 27 (179)
||+...+++...+|- ..-.++|.||+.
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsV 38 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASV 38 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 467778888888775 335778899986
No 118
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.70 E-value=1.2e+02 Score=23.45 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=25.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCceeccCCC
Q 030297 36 YSDADLIAEQEIWAAVDPNARNEAFNCTNGD 66 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~a~geaFNi~dg~ 66 (179)
....+.+|+++.+++.+....|+.||+.+|-
T Consensus 221 ~~~~~~~a~~~~~l~~~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 221 LGEPEEIAHTVRFIIENDYVTGRVLEIDGGL 251 (253)
T ss_pred CcCHHHHHHHHHHHHcCCCcCCcEEEeCCCc
Confidence 4577889999999997765678999998764
No 119
>PRK12828 short chain dehydrogenase; Provisional
Probab=21.44 E-value=1e+02 Score=23.46 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHhcCCC--CCCCceeccCCCcc
Q 030297 36 YSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDVF 68 (179)
Q Consensus 36 ~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~~ 68 (179)
.++.+.+|+++.+++..+. ..|+.+++.+|...
T Consensus 204 ~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~~~ 238 (239)
T PRK12828 204 WVTPEQIAAVIAFLLSDEAQAITGASIPVDGGVAL 238 (239)
T ss_pred CCCHHHHHHHHHHHhCcccccccceEEEecCCEeC
Confidence 4678899999999998653 34888888887643
No 120
>PHA00663 hypothetical protein
Probab=21.22 E-value=42 Score=21.30 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=17.8
Q ss_pred CCCceeccCCCcccHHHHHHHHHHHhc
Q 030297 56 RNEAFNCTNGDVFKWKHLWKVLAEQFE 82 (179)
Q Consensus 56 ~geaFNi~dg~~~sw~~lw~~iA~~fG 82 (179)
.|+.|-+-||...|| +.|.=+.-.+
T Consensus 17 ~gdvFdvpdg~kaSW--fvpA~~A~~~ 41 (68)
T PHA00663 17 PGDKFDVPDGAKASW--FAPASAAQHA 41 (68)
T ss_pred cCceeecCCCCeeee--Eeehhhcccc
Confidence 589999999999998 3344333333
No 121
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.20 E-value=1e+02 Score=23.80 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=25.8
Q ss_pred ccCCHHHHHHHHHHHhcCCC--CCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~ 67 (179)
...+.+.+|+++++++.++. ..|+.|++..|..
T Consensus 213 ~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 213 RMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEECCCee
Confidence 35778999999999998754 3489998887654
No 122
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=20.96 E-value=1.8e+02 Score=20.88 Aligned_cols=17 Identities=12% Similarity=0.093 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCCCCCC
Q 030297 107 ESVWEEIVRENQLQPTK 123 (179)
Q Consensus 107 ~~~w~~l~~~~gL~~~~ 123 (179)
.++-..+|+||.|....
T Consensus 60 ~~AVN~LVeKY~LvRiD 76 (114)
T PF06755_consen 60 ADAVNFLVEKYELVRID 76 (114)
T ss_pred HHHHHHHHHHHhhhhcC
Confidence 56778899999865543
No 123
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=20.19 E-value=1.3e+02 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.0
Q ss_pred ccCCHHHHHHHHHHHhcCCC--CCCCceeccCCCc
Q 030297 35 EYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDV 67 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~ 67 (179)
...+++.+|+++.+++..+. ..||.|++.+|..
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 214 RLGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred CCcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 45788899999999887653 3589999976543
No 124
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=20.06 E-value=1.3e+02 Score=23.44 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=26.3
Q ss_pred ccCCHHHHHHHHHHHhcCCC--CCCCceeccCCCccc
Q 030297 35 EYSDADLIAEQEIWAAVDPN--ARNEAFNCTNGDVFK 69 (179)
Q Consensus 35 ~~~~~~~la~~~i~a~~~p~--a~geaFNi~dg~~~s 69 (179)
.....+.+|+++++++.++. ..|+.+++..|..+|
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 218 RWGKVEELVGACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCcEEEECCCeecc
Confidence 35567889999999987643 348999998876554
Done!