BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030298
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166
V +A I GD VIC+E +R++P +V+GSRG G Q V G+V +C+ H + P++
Sbjct: 101 VGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE-CPVM 159
Query: 167 VV 168
+
Sbjct: 160 TI 161
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 80 SVQNQIVYDMSQGLMEKLAIEAMDVAMVR----------TKARIVEGDAAKVICKEAERL 129
+V N++ ++ Q + E +D R +A + G K+IC+ A++
Sbjct: 7 AVGNELTMEVWQQQWQTFEQEGLDTLEKRRQQALALDIECQAEQILGSPGKIICQRAKQD 66
Query: 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169
+V+G RGR + +L GSVG Y HH + VVP
Sbjct: 67 NSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCC-VFVVP 105
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 30 ELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS-------SVQ 82
+ + +R + +D S HA +WA+ L R DT+ +V + +V+
Sbjct: 419 DFQTAASSSKRNCTYFLTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDPSARAVK 478
Query: 83 NQIVYDMSQGLMEK-----LAIEAMDVAMVRTKARIVEGDAAK-VICKEAERLKPAAVVI 136
+++ + + L EK L + + V V ++ + AK +I + + ++P+ VV+
Sbjct: 479 DRMESEQLETL-EKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMIDYIEPSLVVM 537
Query: 137 GSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171
GSRGR ++ VL GS Y ++ + P++V K
Sbjct: 538 GSRGRSHLKGVLLGSFSNYLVNK-SSVPVMVARKK 571
>sp|O74782|YGBA_SCHPO Universal stress protein A family protein C25B2.10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC25B2.10 PE=1 SV=1
Length = 307
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADT-----IHLVHAVSSV-----QNQIVYD 88
R R L +D S+ A DW L LAD + ++ S + Q
Sbjct: 137 RTSRTFLCGMDGNSYSEVAVDWLFETL--LADNDEAVVLRVIDPSSKLAEDLSDEQSYRS 194
Query: 89 MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL--IQS 146
+++ +M + + D V +V G +I + P ++++G+RG+ L QS
Sbjct: 195 LAEHIMAGILKKVDDDKAVSIIVELVVGKPQDMILRTIHVYSPDSLIVGTRGKALNSFQS 254
Query: 147 VL-QGSVGEYCLHHCKTAPIIVVPGKE 172
+L GSV ++CL I+V P ++
Sbjct: 255 LLSSGSVSKFCLQKSPIPVIVVRPDRK 281
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium
tuberculosis GN=Rv2623 PE=1 SV=1
Length = 297
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 18/136 (13%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ----IVYDMSQGLMEKLAI 99
+L+ VD S+ A A R + +HA S V I + +Q + E++
Sbjct: 162 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLA 221
Query: 100 EAM--------DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
E + +VA+ R +V A+ + + +E + VV+GSRGRG +L GS
Sbjct: 222 ERLAGWQERYPNVAITRV---VVRDQPARQLVQRSEEAQ--LVVVGSRGRGGYAGMLVGS 276
Query: 152 VGEYCLHHCKTAPIIV 167
VGE +T P+IV
Sbjct: 277 VGETVAQLART-PVIV 291
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 113 IVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168
I+EGD A+ I + A R+ +V GSR + ++ ++ GSV E L P+++V
Sbjct: 111 ILEGDPAESIIEHANRISADMIVTGSRDQNRLKKLIFGSVSEK-LSAKSDIPVLIV 165
>sp|O27222|Y1154_METTH Universal stress protein MTH_1154 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1154 PE=3 SV=1
Length = 146
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 74 LVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAA 133
+V ++ N+I+ DM +GL E +V+ +A + EGD A I K AE
Sbjct: 57 MVKELTQRGNEILRDMEKGLT---GPENPNVSF---RAVMREGDPADEIVKVAEEEDVDV 110
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHH 159
+V+G+ G+ L+ L GSV E +H+
Sbjct: 111 IVMGT-GKSLVDKHLLGSVSEKVVHY 135
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAP 164
V+ ++EG A I + AE+ K +V+G+ G+ ++ +L GSV E + HC P
Sbjct: 104 VKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNAHC---P 160
Query: 165 IIVV--PGKE 172
++VV P KE
Sbjct: 161 VLVVKKPKKE 170
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDM---------SQGLM 94
+L+ +D P S+ A A R + +HA + + V M ++ L
Sbjct: 161 VLVGIDGSPASEAATALAFDEASRRRVDLVALHAWTDLGMFPVLGMDWREREKREAEVLA 220
Query: 95 EKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGE 154
E+LA VR +V A+ + + +E+ + VV+GS GRG +L GSV
Sbjct: 221 ERLAGWQEQYPDVRVHRSLVCDKPARWLLEHSEQAQ--LVVVGSHGRGGFSGMLLGSVSS 278
Query: 155 YCLHHCKTAPIIVVP 169
H + I+V P
Sbjct: 279 AVAHSVRIPVIVVRP 293
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172
VV+G+RG G + VL GS LH+ + P++VV G +
Sbjct: 114 VVVGNRGMGALGRVLLGSTSTSLLHYA-SGPVVVVHGDD 151
>sp|Q09FY8|YCF1_PLAOC Putative membrane protein ycf1 OS=Platanus occidentalis GN=ycf1 PE=3
SV=1
Length = 1915
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 41 GRDILIAVDHGPNSKHAFDWALIHLC 66
G D +I D P+ K+ FDW ++H C
Sbjct: 1427 GEDYIIETDKNPDRKY-FDWGILHFC 1451
>sp|Q50777|Y1538_METTM Universal stress protein MTBMA_c15380 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=MTBMA_c15380 PE=3 SV=1
Length = 143
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 74 LVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAA 133
+V ++ +I+ DM +GL + V+ + ++EG+ A I K AE
Sbjct: 54 MVKELTERGKEILRDMEKGLT------GPENPNVKFRGVMLEGNPADEIVKLAEEEDVDV 107
Query: 134 VVIGSRGRGLIQSVLQGSVGEYCLHH 159
+++G+ G+ L+ L GSV E +H+
Sbjct: 108 IIMGT-GKSLVDKHLLGSVSEKVVHY 132
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV 167
G+ + I A+ VV+G RG + V GSV Y +HH + + +IV
Sbjct: 101 GEPGRWIRDMAKNWDADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIV 152
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ---------NQIVYDMSQGLM 94
+L+ +D P S+ A A R + VHA S V+ + + + L
Sbjct: 162 VLVGIDGSPVSELATAVAFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQQEAELSLA 221
Query: 95 EKLAI---EAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
E+LA DV + R + + A K++ K A VV+GS GRG + +L GS
Sbjct: 222 ERLAGWQERYPDVPVSRVV--VCDRPARKLVQKSASA---QLVVVGSHGRGGLTGMLLGS 276
Query: 152 VGEYCLHHCKTAPIIV 167
V LH + P+IV
Sbjct: 277 VSNAVLHAARV-PVIV 291
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ---------NQIVYDMSQGLM 94
+L+ +D P S+ A A R + VHA S V+ + + + L
Sbjct: 162 VLVGIDGSPVSELATAVAFDEASRRGVELIAVHAWSDVEVVELPGLDFSAVQQEAELSLA 221
Query: 95 EKLAI---EAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
E+LA DV + R + + A K++ K A VV+GS GRG + +L GS
Sbjct: 222 ERLAGWQERYPDVPVSRVV--VCDRPARKLVQKSASA---QLVVVGSHGRGGLTGMLLGS 276
Query: 152 VGEYCLHHCKTAPIIV 167
V LH + P+IV
Sbjct: 277 VSNAVLHAARV-PVIV 291
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 74 LVHAVSSVQNQIVYDMSQ---GLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130
L +V +N++ +++ ME + E DV + K IV G + I K AE
Sbjct: 62 LNKSVEEFENELKNKLTEEAKNKMENIKKELEDVGF-KVKDIIVVGIPHEEIVKIAEDEG 120
Query: 131 PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173
+++GS G+ ++ +L GSV E + P++VV K +
Sbjct: 121 VDIIIMGSHGKTNLKEILLGSVTENVIKKS-NKPVLVVKRKNS 162
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 95 EKLAIEAMDVAMV-RTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151
EK+ EAM + V R A +++G A+ I + A K +V+G+RG G + S+ GS
Sbjct: 63 EKVRAEAMALTGVPREDALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAVGSLFLGS 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,441,645
Number of Sequences: 539616
Number of extensions: 2556807
Number of successful extensions: 7256
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 7233
Number of HSP's gapped (non-prelim): 44
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)