Query 030298
Match_columns 179
No_of_seqs 128 out of 1019
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15005 universal stress prot 99.9 2.5E-24 5.3E-29 151.3 15.7 127 40-169 1-144 (144)
2 PRK15456 universal stress prot 99.9 3E-24 6.5E-29 150.8 15.8 127 40-169 1-142 (142)
3 PF00582 Usp: Universal stress 99.9 2.2E-23 4.8E-28 144.0 15.8 129 40-169 1-140 (140)
4 PRK09982 universal stress prot 99.9 1.5E-23 3.2E-28 147.4 14.5 130 39-172 1-141 (142)
5 PRK15118 universal stress glob 99.9 2.5E-23 5.4E-28 146.3 14.7 130 39-172 1-141 (144)
6 cd01989 STK_N The N-terminal d 99.9 1.2E-22 2.6E-27 143.1 14.8 127 43-170 1-145 (146)
7 PRK10116 universal stress prot 99.9 1.8E-22 3.9E-27 141.5 14.7 131 39-172 1-141 (142)
8 PRK11175 universal stress prot 99.9 2.7E-22 5.8E-27 157.3 16.2 150 12-172 133-302 (305)
9 cd01988 Na_H_Antiporter_C The 99.9 2.9E-21 6.3E-26 133.3 15.8 125 43-169 1-132 (132)
10 cd01987 USP_OKCHK USP domain i 99.9 3.1E-21 6.8E-26 132.2 13.3 123 43-169 1-124 (124)
11 PRK11175 universal stress prot 99.9 6.1E-21 1.3E-25 149.6 14.4 131 39-171 1-147 (305)
12 cd00293 USP_Like Usp: Universa 99.8 8.9E-19 1.9E-23 119.6 15.0 124 43-168 1-130 (130)
13 COG0589 UspA Universal stress 99.8 1.4E-17 3E-22 117.3 15.5 131 39-171 3-153 (154)
14 PRK12652 putative monovalent c 99.6 3.5E-14 7.5E-19 113.0 16.4 129 38-168 2-149 (357)
15 PRK10490 sensor protein KdpD; 99.6 2.5E-14 5.5E-19 126.4 13.4 163 4-171 209-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.5 8.8E-13 1.9E-17 112.0 11.6 168 4-174 207-378 (890)
17 cd01984 AANH_like Adenine nucl 98.6 3.8E-07 8.2E-12 58.2 7.1 84 44-167 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.4 0.0037 8E-08 55.8 12.7 127 42-170 459-615 (832)
19 PLN03159 cation/H(+) antiporte 97.0 0.014 3.1E-07 52.2 12.4 40 41-80 630-669 (832)
20 TIGR02432 lysidine_TilS_N tRNA 96.9 0.034 7.3E-07 40.5 11.3 94 43-142 1-111 (189)
21 PF01171 ATP_bind_3: PP-loop f 96.4 0.1 2.2E-06 37.9 11.2 92 43-140 1-106 (182)
22 cd01992 PP-ATPase N-terminal d 96.3 0.13 2.8E-06 37.2 11.0 93 43-141 1-107 (185)
23 PRK12342 hypothetical protein; 95.5 0.29 6.2E-06 37.7 10.2 101 49-166 32-140 (254)
24 cd01993 Alpha_ANH_like_II This 95.0 0.48 1E-05 34.1 10.0 92 43-140 1-116 (185)
25 PRK03359 putative electron tra 94.9 0.74 1.6E-05 35.5 11.0 101 50-166 34-143 (256)
26 COG2086 FixA Electron transfer 94.2 0.67 1.5E-05 35.8 9.3 99 50-166 35-142 (260)
27 COG0037 MesJ tRNA(Ile)-lysidin 93.9 0.82 1.8E-05 35.7 9.7 104 42-153 22-147 (298)
28 PF01012 ETF: Electron transfe 93.7 1.3 2.7E-05 31.5 9.5 96 52-166 15-118 (164)
29 PF00448 SRP54: SRP54-type pro 93.6 1.6 3.6E-05 32.1 10.3 113 43-168 4-120 (196)
30 TIGR00591 phr2 photolyase PhrI 93.4 0.73 1.6E-05 38.5 9.0 93 44-139 25-122 (454)
31 PF00875 DNA_photolyase: DNA p 93.2 0.88 1.9E-05 32.3 8.1 107 54-170 13-125 (165)
32 PRK10696 tRNA 2-thiocytidine b 92.9 3 6.4E-05 32.1 11.0 91 42-141 30-142 (258)
33 PRK05253 sulfate adenylyltrans 92.8 1.8 3.8E-05 34.3 9.7 94 40-141 26-138 (301)
34 TIGR02039 CysD sulfate adenyly 90.6 5.5 0.00012 31.4 10.3 92 41-140 19-129 (294)
35 PRK10867 signal recognition pa 89.9 5.7 0.00012 33.1 10.4 96 43-148 103-201 (433)
36 cd01986 Alpha_ANH_like Adenine 89.6 4 8.8E-05 26.4 8.1 71 44-140 1-71 (103)
37 TIGR02852 spore_dpaB dipicolin 89.0 4.2 9E-05 29.9 8.0 34 42-76 1-35 (187)
38 PRK13820 argininosuccinate syn 88.0 13 0.00028 30.6 11.1 89 41-141 2-120 (394)
39 COG0541 Ffh Signal recognition 87.9 12 0.00026 31.2 10.7 116 42-169 102-220 (451)
40 cd01713 PAPS_reductase This do 87.5 7.6 0.00017 27.0 10.2 37 43-80 1-37 (173)
41 PRK12563 sulfate adenylyltrans 87.4 8.1 0.00017 30.8 9.2 93 40-140 36-147 (312)
42 TIGR00268 conserved hypothetic 87.1 8 0.00017 29.6 9.0 88 41-140 12-117 (252)
43 PRK07313 phosphopantothenoylcy 86.9 2.7 5.8E-05 30.7 6.0 34 42-76 2-35 (182)
44 PRK05579 bifunctional phosphop 86.5 9.1 0.0002 31.6 9.4 114 40-171 5-125 (399)
45 TIGR00959 ffh signal recogniti 86.4 15 0.00032 30.6 10.7 96 42-147 101-199 (428)
46 COG0552 FtsY Signal recognitio 85.9 15 0.00033 29.5 10.0 100 40-150 139-241 (340)
47 PRK13982 bifunctional SbtC-lik 85.8 4.9 0.00011 33.9 7.7 117 39-173 68-191 (475)
48 PRK08091 ribulose-phosphate 3- 85.5 7.4 0.00016 29.5 7.8 67 71-139 143-209 (228)
49 cd01985 ETF The electron trans 85.4 11 0.00025 27.0 12.3 78 50-141 17-102 (181)
50 cd01995 ExsB ExsB is a transcr 85.2 11 0.00024 26.7 9.8 86 43-142 1-88 (169)
51 PRK08305 spoVFB dipicolinate s 84.6 7.1 0.00015 28.9 7.2 35 41-76 5-40 (196)
52 TIGR02765 crypto_DASH cryptoch 84.5 9.4 0.0002 31.6 8.8 84 49-139 10-105 (429)
53 TIGR02113 coaC_strep phosphopa 84.4 6.9 0.00015 28.4 7.1 34 42-76 1-34 (177)
54 PRK09722 allulose-6-phosphate 84.4 16 0.00034 27.8 10.8 68 70-139 132-199 (229)
55 COG0036 Rpe Pentose-5-phosphat 84.3 8.9 0.00019 28.9 7.7 95 42-139 86-199 (220)
56 PRK08745 ribulose-phosphate 3- 84.1 9 0.00019 28.9 7.8 67 71-139 135-201 (223)
57 PRK14057 epimerase; Provisiona 84.0 9.4 0.0002 29.4 7.9 67 71-139 157-223 (254)
58 PF02887 PK_C: Pyruvate kinase 83.3 4.1 8.9E-05 27.2 5.2 44 119-171 5-48 (117)
59 PF04459 DUF512: Protein of un 83.2 13 0.00028 27.7 8.2 80 92-172 110-203 (204)
60 TIGR03556 photolyase_8HDF deox 83.2 10 0.00022 31.9 8.6 106 50-165 11-122 (471)
61 PF02844 GARS_N: Phosphoribosy 83.1 1.2 2.6E-05 29.2 2.4 44 115-166 47-90 (100)
62 KOG1467 Translation initiation 82.9 28 0.00061 29.5 10.7 107 42-170 360-469 (556)
63 TIGR01425 SRP54_euk signal rec 82.6 24 0.00053 29.4 10.3 98 44-152 104-204 (429)
64 COG1927 Mtd Coenzyme F420-depe 82.5 12 0.00026 28.1 7.5 68 98-170 23-95 (277)
65 KOG1650 Predicted K+/H+-antipo 82.2 11 0.00024 33.9 8.7 101 40-141 613-723 (769)
66 KOG0781 Signal recognition par 81.9 31 0.00068 29.4 10.7 114 39-160 377-495 (587)
67 PRK00919 GMP synthase subunit 81.2 11 0.00024 29.9 7.6 37 42-81 22-58 (307)
68 cd00408 DHDPS-like Dihydrodipi 80.7 22 0.00048 27.4 9.2 122 45-171 6-132 (281)
69 cd01990 Alpha_ANH_like_I This 80.7 20 0.00042 26.2 9.3 86 44-140 1-105 (202)
70 PLN00200 argininosuccinate syn 78.5 37 0.00081 28.1 12.3 39 40-81 4-42 (404)
71 TIGR01162 purE phosphoribosyla 78.0 18 0.00039 25.8 7.1 63 101-172 20-86 (156)
72 PRK14665 mnmA tRNA-specific 2- 77.7 37 0.0008 27.7 11.4 90 42-141 6-124 (360)
73 COG0041 PurE Phosphoribosylcar 76.3 20 0.00043 25.4 6.8 61 102-171 25-89 (162)
74 cd01714 ETF_beta The electron 75.7 30 0.00064 25.6 9.0 85 46-143 29-121 (202)
75 PRK00109 Holliday junction res 74.4 8.2 0.00018 26.8 4.6 53 118-171 42-98 (138)
76 COG0299 PurN Folate-dependent 74.4 33 0.00071 25.4 10.0 82 43-139 2-88 (200)
77 cd08550 GlyDH-like Glycerol_de 74.1 44 0.00096 26.8 10.6 61 102-171 45-110 (349)
78 TIGR02699 archaeo_AfpA archaeo 73.9 27 0.00059 25.3 7.3 34 43-76 1-35 (174)
79 TIGR00521 coaBC_dfp phosphopan 73.6 46 0.00099 27.4 9.4 113 42-171 4-121 (390)
80 PRK10660 tilS tRNA(Ile)-lysidi 73.6 53 0.0011 27.5 11.4 64 42-111 16-80 (436)
81 cd00951 KDGDH 5-dehydro-4-deox 73.5 42 0.0009 26.2 10.1 119 46-170 10-133 (289)
82 PRK05772 translation initiatio 73.2 50 0.0011 27.0 9.9 94 62-171 192-289 (363)
83 cd00950 DHDPS Dihydrodipicolin 72.7 40 0.00086 26.1 8.6 52 119-171 84-135 (284)
84 PRK00994 F420-dependent methyl 72.3 42 0.00091 25.8 8.7 69 97-171 22-96 (277)
85 PRK02929 L-arabinose isomerase 71.7 64 0.0014 27.6 11.2 93 70-170 7-105 (499)
86 COG1606 ATP-utilizing enzymes 71.5 30 0.00065 26.8 7.3 89 41-140 17-123 (269)
87 PF00834 Ribul_P_3_epim: Ribul 71.2 7.8 0.00017 28.7 4.1 96 42-139 82-196 (201)
88 TIGR00290 MJ0570_dom MJ0570-re 71.2 38 0.00082 25.6 7.8 89 43-139 2-94 (223)
89 TIGR00646 MG010 DNA primase-re 70.7 29 0.00063 26.1 7.0 38 41-78 154-191 (218)
90 TIGR02329 propionate_PrpR prop 70.3 35 0.00076 29.3 8.3 52 109-173 30-84 (526)
91 TIGR02313 HpaI-NOT-DapA 2,4-di 70.1 51 0.0011 25.8 10.9 122 44-171 8-136 (294)
92 PRK08883 ribulose-phosphate 3- 69.7 43 0.00093 25.2 7.8 67 71-139 131-197 (220)
93 PRK06371 translation initiatio 69.5 54 0.0012 26.4 8.6 62 102-170 192-257 (329)
94 cd03364 TOPRIM_DnaG_primases T 69.4 18 0.00038 22.1 4.9 35 41-75 43-77 (79)
95 cd02067 B12-binding B12 bindin 69.3 30 0.00065 22.8 6.9 43 97-140 18-60 (119)
96 TIGR01769 GGGP geranylgeranylg 68.9 13 0.00029 27.6 4.9 51 120-173 14-64 (205)
97 PRK06027 purU formyltetrahydro 68.8 55 0.0012 25.7 10.1 84 40-140 88-175 (286)
98 PRK11889 flhF flagellar biosyn 68.6 67 0.0015 26.9 9.2 115 44-170 245-360 (436)
99 PF00731 AIRC: AIR carboxylase 68.6 39 0.00084 23.9 7.0 62 102-172 23-88 (150)
100 PRK08334 translation initiatio 68.5 62 0.0013 26.4 8.9 62 102-170 215-280 (356)
101 COG1184 GCD2 Translation initi 67.9 60 0.0013 25.8 11.6 107 42-170 120-229 (301)
102 PRK03170 dihydrodipicolinate s 67.5 57 0.0012 25.4 11.0 122 45-171 10-136 (292)
103 PRK06029 3-octaprenyl-4-hydrox 67.4 12 0.00026 27.4 4.3 35 42-76 2-36 (185)
104 TIGR03573 WbuX N-acetyl sugar 67.2 64 0.0014 26.0 8.8 89 42-141 60-171 (343)
105 PRK05720 mtnA methylthioribose 67.0 58 0.0013 26.4 8.5 63 102-171 202-268 (344)
106 PF02601 Exonuc_VII_L: Exonucl 66.9 33 0.00072 27.1 7.1 37 130-168 75-113 (319)
107 PRK15424 propionate catabolism 66.8 33 0.00072 29.6 7.5 66 95-173 26-94 (538)
108 PRK06036 translation initiatio 66.7 68 0.0015 26.0 8.9 62 102-170 203-267 (339)
109 COG1646 Predicted phosphate-bi 66.4 43 0.00094 25.5 7.1 54 117-173 28-81 (240)
110 PF03652 UPF0081: Uncharacteri 66.2 15 0.00032 25.4 4.4 56 116-172 37-97 (135)
111 cd01997 GMP_synthase_C The C-t 66.2 31 0.00068 27.2 6.7 35 43-80 1-35 (295)
112 PF01008 IF-2B: Initiation fac 65.8 48 0.001 25.6 7.8 108 42-171 108-219 (282)
113 TIGR00655 PurU formyltetrahydr 65.7 63 0.0014 25.3 9.4 83 41-140 84-170 (280)
114 PHA02031 putative DnaG-like pr 65.6 26 0.00056 27.2 6.0 39 41-79 206-244 (266)
115 cd02070 corrinoid_protein_B12- 65.1 42 0.00091 24.6 7.0 69 97-168 101-171 (201)
116 PF13662 Toprim_4: Toprim doma 64.9 11 0.00025 23.1 3.4 33 41-73 46-78 (81)
117 COG0420 SbcD DNA repair exonuc 64.9 13 0.00029 30.3 4.6 21 118-138 28-48 (390)
118 TIGR00032 argG argininosuccina 64.8 80 0.0017 26.1 10.5 34 43-80 1-34 (394)
119 TIGR00683 nanA N-acetylneurami 64.8 66 0.0014 25.2 11.4 123 45-171 9-137 (290)
120 TIGR03249 KdgD 5-dehydro-4-deo 64.7 66 0.0014 25.2 10.6 119 44-169 13-137 (296)
121 TIGR00250 RNAse_H_YqgF RNAse H 64.1 19 0.0004 24.7 4.6 54 117-171 35-92 (130)
122 PRK08384 thiamine biosynthesis 64.0 56 0.0012 26.9 8.0 39 37-79 176-214 (381)
123 cd01125 repA Hexameric Replica 63.9 60 0.0013 24.4 9.0 54 118-173 99-160 (239)
124 cd02072 Glm_B12_BD B12 binding 62.6 38 0.00082 23.2 5.8 44 96-140 17-60 (128)
125 TIGR00884 guaA_Cterm GMP synth 62.0 80 0.0017 25.1 11.2 89 42-140 17-127 (311)
126 PRK08005 epimerase; Validated 61.9 44 0.00096 25.0 6.5 27 113-139 167-193 (210)
127 cd01998 tRNA_Me_trans tRNA met 61.9 84 0.0018 25.4 9.0 23 119-141 102-124 (349)
128 PRK04147 N-acetylneuraminate l 61.2 78 0.0017 24.7 10.8 113 54-171 22-139 (293)
129 PRK11070 ssDNA exonuclease Rec 60.8 99 0.0021 27.0 9.3 95 39-140 67-161 (575)
130 cd01712 ThiI ThiI is required 60.8 58 0.0013 23.2 11.1 35 43-81 1-35 (177)
131 PF02310 B12-binding: B12 bind 60.7 44 0.00096 21.8 6.8 19 120-138 41-59 (121)
132 TIGR00524 eIF-2B_rel eIF-2B al 60.7 83 0.0018 24.9 8.7 62 102-170 174-239 (303)
133 TIGR00237 xseA exodeoxyribonuc 59.7 15 0.00032 30.7 4.1 51 116-168 168-225 (432)
134 COG1066 Sms Predicted ATP-depe 59.5 1.1E+02 0.0023 25.8 11.3 112 42-171 94-219 (456)
135 PF02441 Flavoprotein: Flavopr 59.1 22 0.00048 24.0 4.2 110 42-171 1-119 (129)
136 COG0452 Dfp Phosphopantothenoy 59.1 49 0.0011 27.3 6.9 113 42-172 5-123 (392)
137 TIGR01501 MthylAspMutase methy 58.8 39 0.00085 23.3 5.4 43 96-140 19-62 (134)
138 TIGR00342 thiazole biosynthesi 58.8 99 0.0021 25.2 10.6 40 37-80 168-207 (371)
139 PRK08576 hypothetical protein; 58.6 1.1E+02 0.0024 25.7 10.1 85 43-139 236-339 (438)
140 TIGR00420 trmU tRNA (5-methyla 58.4 99 0.0021 25.1 9.4 33 42-78 1-33 (352)
141 PRK09590 celB cellobiose phosp 57.9 19 0.0004 23.7 3.5 66 99-174 22-87 (104)
142 TIGR00853 pts-lac PTS system, 57.9 20 0.00044 23.0 3.7 64 99-174 24-87 (95)
143 COG3969 Predicted phosphoadeno 57.8 29 0.00064 28.1 5.1 41 40-80 26-67 (407)
144 PRK00074 guaA GMP synthase; Re 57.7 1.2E+02 0.0027 25.9 11.0 89 42-140 216-326 (511)
145 TIGR00674 dapA dihydrodipicoli 57.6 89 0.0019 24.3 10.5 123 44-171 6-133 (285)
146 PF07355 GRDB: Glycine/sarcosi 57.3 16 0.00035 29.5 3.7 50 118-168 68-117 (349)
147 TIGR00640 acid_CoA_mut_C methy 57.2 39 0.00085 23.1 5.2 59 96-158 20-79 (132)
148 PRK05703 flhF flagellar biosyn 57.1 1.1E+02 0.0025 25.4 9.6 88 46-146 227-315 (424)
149 cd03557 L-arabinose_isomerase 56.8 1.3E+02 0.0027 25.8 10.6 76 89-171 20-100 (484)
150 TIGR00289 conserved hypothetic 56.8 76 0.0017 24.0 7.1 89 43-139 2-94 (222)
151 cd02069 methionine_synthase_B1 56.7 63 0.0014 24.1 6.7 68 96-167 106-174 (213)
152 PRK14664 tRNA-specific 2-thiou 56.5 1.1E+02 0.0024 25.0 10.4 85 42-141 6-119 (362)
153 TIGR00512 salvage_mtnA S-methy 56.4 1.1E+02 0.0023 24.8 8.7 62 102-170 202-267 (331)
154 cd00954 NAL N-Acetylneuraminic 56.0 96 0.0021 24.2 11.5 52 119-171 85-137 (288)
155 PRK08335 translation initiatio 55.8 98 0.0021 24.2 9.5 60 102-170 156-219 (275)
156 PRK08185 hypothetical protein; 55.7 35 0.00076 26.8 5.3 51 116-167 23-73 (283)
157 cd05565 PTS_IIB_lactose PTS_II 55.6 24 0.00052 23.0 3.8 63 98-172 20-82 (99)
158 cd00952 CHBPH_aldolase Trans-o 54.9 1E+02 0.0023 24.3 11.4 112 54-171 27-144 (309)
159 PF01884 PcrB: PcrB family; I 54.6 25 0.00054 26.7 4.2 52 117-173 19-70 (230)
160 PF00180 Iso_dh: Isocitrate/is 54.4 98 0.0021 25.1 7.8 79 51-137 159-238 (348)
161 PRK02261 methylaspartate mutas 54.4 69 0.0015 22.1 7.2 42 98-141 23-65 (137)
162 PRK08535 translation initiatio 54.0 1.1E+02 0.0024 24.3 10.0 60 102-170 167-230 (310)
163 PRK00286 xseA exodeoxyribonucl 53.6 64 0.0014 26.8 6.9 51 116-168 174-230 (438)
164 cd07044 CofD_YvcK Family of Co 53.4 23 0.00049 28.2 4.0 51 117-171 163-215 (309)
165 PRK15411 rcsA colanic acid cap 53.3 89 0.0019 23.0 8.7 49 117-171 34-86 (207)
166 PRK13010 purU formyltetrahydro 53.1 1.1E+02 0.0024 24.1 9.7 83 41-140 93-179 (289)
167 PRK13011 formyltetrahydrofolat 52.7 1.1E+02 0.0024 24.0 9.6 84 40-140 88-175 (286)
168 PRK05920 aromatic acid decarbo 52.5 34 0.00074 25.5 4.6 36 40-76 2-37 (204)
169 TIGR00511 ribulose_e2b2 ribose 52.5 1.2E+02 0.0025 24.1 9.9 60 102-170 162-225 (301)
170 TIGR00583 mre11 DNA repair pro 52.4 44 0.00095 27.7 5.6 15 160-175 109-123 (405)
171 TIGR01826 CofD_related conserv 52.2 38 0.00083 27.0 5.0 52 117-172 161-214 (310)
172 PRK09195 gatY tagatose-bisphos 51.8 49 0.0011 26.0 5.6 51 116-167 28-79 (284)
173 PF01933 UPF0052: Uncharacteri 51.4 34 0.00074 27.1 4.7 52 117-172 172-225 (300)
174 COG2102 Predicted ATPases of P 51.0 1.1E+02 0.0023 23.3 7.4 90 43-139 2-95 (223)
175 COG0415 PhrB Deoxyribodipyrimi 50.2 1.6E+02 0.0034 25.0 8.8 111 49-168 11-125 (461)
176 cd01029 TOPRIM_primases TOPRIM 50.0 55 0.0012 19.6 4.7 31 42-72 44-74 (79)
177 PRK09423 gldA glycerol dehydro 49.8 1.4E+02 0.003 24.2 10.8 16 120-135 74-89 (366)
178 PLN02948 phosphoribosylaminoim 49.7 89 0.0019 27.2 7.3 64 100-172 431-498 (577)
179 PRK06801 hypothetical protein; 49.2 70 0.0015 25.2 6.1 51 116-167 28-79 (286)
180 smart00851 MGS MGS-like domain 49.2 62 0.0014 20.2 4.9 61 104-166 28-89 (90)
181 TIGR00064 ftsY signal recognit 49.0 1.2E+02 0.0027 23.4 9.4 89 47-146 79-170 (272)
182 PF04244 DPRP: Deoxyribodipyri 48.9 61 0.0013 24.5 5.5 74 92-172 49-127 (224)
183 cd07186 CofD_like LPPG:FO 2-ph 48.6 71 0.0015 25.4 6.0 50 117-170 172-223 (303)
184 cd00946 FBP_aldolase_IIA Class 48.0 69 0.0015 26.0 5.9 51 116-167 26-92 (345)
185 PRK01565 thiamine biosynthesis 47.8 1.6E+02 0.0034 24.3 11.9 39 37-79 172-210 (394)
186 PRK08349 hypothetical protein; 47.8 1.1E+02 0.0023 22.3 10.7 33 43-79 2-34 (198)
187 PRK00771 signal recognition pa 47.7 1.7E+02 0.0037 24.6 10.2 92 44-148 99-193 (437)
188 PF01596 Methyltransf_3: O-met 47.5 74 0.0016 23.6 5.7 41 100-140 88-131 (205)
189 PRK06806 fructose-bisphosphate 47.3 84 0.0018 24.6 6.2 51 116-167 28-79 (281)
190 COG1058 CinA Predicted nucleot 47.2 1.3E+02 0.0028 23.3 7.1 60 101-166 29-91 (255)
191 TIGR02082 metH 5-methyltetrahy 47.2 2.1E+02 0.0044 27.6 9.5 70 96-169 750-820 (1178)
192 COG1597 LCB5 Sphingosine kinas 47.1 1.4E+02 0.0031 23.5 7.9 40 100-139 27-67 (301)
193 cd01715 ETF_alpha The electron 47.1 1E+02 0.0022 21.8 11.2 24 118-141 71-94 (168)
194 PRK14974 cell division protein 47.0 1.5E+02 0.0033 23.9 9.8 115 44-170 144-262 (336)
195 TIGR00619 sbcd exonuclease Sbc 46.9 37 0.00081 25.9 4.2 9 109-117 40-48 (253)
196 cd07187 YvcK_like family of mo 46.8 51 0.0011 26.2 5.0 53 117-173 164-218 (308)
197 PF13362 Toprim_3: Toprim doma 46.4 73 0.0016 20.0 5.1 38 40-77 40-79 (96)
198 PHA02546 47 endonuclease subun 46.2 68 0.0015 25.7 5.8 20 119-138 28-47 (340)
199 cd05564 PTS_IIB_chitobiose_lic 45.5 50 0.0011 21.2 4.1 65 98-174 19-83 (96)
200 cd00532 MGS-like MGS-like doma 45.2 86 0.0019 20.5 6.3 101 44-167 2-104 (112)
201 PF00072 Response_reg: Respons 44.9 77 0.0017 19.9 8.1 50 119-172 32-81 (112)
202 PRK11914 diacylglycerol kinase 44.9 1.2E+02 0.0026 23.7 6.9 96 40-148 7-106 (306)
203 PRK00143 mnmA tRNA-specific 2- 44.8 1.7E+02 0.0036 23.7 10.9 96 42-142 1-128 (346)
204 PRK06247 pyruvate kinase; Prov 44.5 77 0.0017 27.0 5.9 46 118-172 357-402 (476)
205 PRK12857 fructose-1,6-bisphosp 44.3 83 0.0018 24.7 5.8 51 116-167 28-79 (284)
206 TIGR01858 tag_bisphos_ald clas 44.0 86 0.0019 24.6 5.8 51 116-167 26-77 (282)
207 PRK06850 hypothetical protein; 43.9 2.1E+02 0.0046 24.6 8.8 71 42-113 35-110 (507)
208 PRK12737 gatY tagatose-bisphos 43.5 84 0.0018 24.7 5.7 51 116-167 28-79 (284)
209 PRK10674 deoxyribodipyrimidine 43.2 2E+02 0.0044 24.2 9.6 87 49-139 11-105 (472)
210 PF14639 YqgF: Holliday-juncti 43.0 33 0.00072 24.1 3.1 49 119-171 52-107 (150)
211 cd02071 MM_CoA_mut_B12_BD meth 42.8 99 0.0021 20.6 5.4 42 97-140 18-60 (122)
212 COG3360 Uncharacterized conser 42.6 77 0.0017 19.2 4.3 43 38-80 3-45 (71)
213 TIGR00347 bioD dethiobiotin sy 42.5 82 0.0018 21.9 5.2 40 129-170 98-137 (166)
214 COG0391 Uncharacterized conser 42.3 70 0.0015 25.7 5.1 52 117-172 178-231 (323)
215 TIGR00169 leuB 3-isopropylmala 42.3 1.1E+02 0.0024 24.8 6.4 77 52-137 163-239 (349)
216 COG2185 Sbm Methylmalonyl-CoA 42.2 89 0.0019 21.9 5.1 18 118-135 79-96 (143)
217 cd08173 Gro1PDH Sn-glycerol-1- 42.2 1.6E+02 0.0035 23.5 7.4 10 130-139 102-111 (339)
218 PRK03620 5-dehydro-4-deoxygluc 42.0 1.7E+02 0.0037 23.0 10.5 112 53-170 25-140 (303)
219 TIGR02370 pyl_corrinoid methyl 41.9 1.4E+02 0.003 21.9 6.7 60 96-159 102-162 (197)
220 cd08171 GlyDH-like2 Glycerol d 41.8 1.8E+02 0.0039 23.3 10.6 15 121-135 69-83 (345)
221 COG0151 PurD Phosphoribosylami 41.5 28 0.0006 29.0 2.8 24 117-140 50-73 (428)
222 TIGR01918 various_sel_PB selen 41.4 41 0.00089 28.0 3.8 50 119-169 65-114 (431)
223 TIGR01917 gly_red_sel_B glycin 41.3 41 0.00089 28.0 3.8 50 119-169 65-114 (431)
224 PRK05627 bifunctional riboflav 41.2 1.4E+02 0.003 23.8 6.6 118 49-171 23-154 (305)
225 TIGR02088 LEU3_arch isopropylm 40.9 1.1E+02 0.0024 24.5 6.1 28 51-78 140-167 (322)
226 TIGR01064 pyruv_kin pyruvate k 40.6 87 0.0019 26.6 5.7 46 118-172 361-406 (473)
227 cd01994 Alpha_ANH_like_IV This 40.6 1.4E+02 0.0031 21.8 8.7 90 43-140 1-98 (194)
228 COG1504 Uncharacterized conser 40.4 73 0.0016 21.3 4.1 38 129-170 60-97 (121)
229 COG0329 DapA Dihydrodipicolina 40.3 1.8E+02 0.004 22.9 11.1 112 51-170 20-138 (299)
230 PRK14713 multifunctional hydro 40.3 2.4E+02 0.0052 24.2 10.8 95 40-138 28-132 (530)
231 cd03114 ArgK-like The function 39.9 64 0.0014 22.4 4.2 48 119-175 80-127 (148)
232 COG0745 OmpR Response regulato 39.8 92 0.002 23.5 5.3 69 96-174 14-84 (229)
233 PF00701 DHDPS: Dihydrodipicol 39.8 1.8E+02 0.0038 22.6 12.6 113 53-170 19-135 (289)
234 COG0816 Predicted endonuclease 39.6 90 0.002 21.8 4.8 52 118-170 41-96 (141)
235 cd01996 Alpha_ANH_like_III Thi 39.5 1.2E+02 0.0027 20.7 9.8 34 43-79 3-36 (154)
236 PLN02762 pyruvate kinase compl 39.2 1E+02 0.0022 26.5 5.8 46 118-172 397-442 (509)
237 PF05728 UPF0227: Uncharacteri 39.1 1.3E+02 0.0028 22.0 5.8 42 120-170 47-89 (187)
238 PF01507 PAPS_reduct: Phosphoa 39.0 1.3E+02 0.0028 20.8 8.3 35 43-81 1-35 (174)
239 PRK08194 tartrate dehydrogenas 38.8 1.4E+02 0.003 24.4 6.4 28 52-79 161-188 (352)
240 PRK05370 argininosuccinate syn 38.7 2.4E+02 0.0052 23.8 9.9 96 42-143 12-135 (447)
241 PF07015 VirC1: VirC1 protein; 38.6 1.8E+02 0.0038 22.2 10.1 30 51-81 13-42 (231)
242 PF01645 Glu_synthase: Conserv 38.6 1.5E+02 0.0032 24.3 6.6 36 106-141 203-238 (368)
243 PLN02958 diacylglycerol kinase 38.1 2.5E+02 0.0055 23.9 10.3 70 98-174 135-211 (481)
244 PRK12738 kbaY tagatose-bisphos 38.1 1.2E+02 0.0026 23.9 5.8 51 116-167 28-79 (286)
245 cd00288 Pyruvate_Kinase Pyruva 37.8 84 0.0018 26.8 5.2 47 118-173 363-409 (480)
246 COG0191 Fba Fructose/tagatose 37.7 1.1E+02 0.0025 24.1 5.5 52 116-168 28-81 (286)
247 PTZ00300 pyruvate kinase; Prov 37.7 1.1E+02 0.0025 25.8 5.9 46 118-172 336-381 (454)
248 PRK00772 3-isopropylmalate deh 37.6 1.4E+02 0.003 24.4 6.2 78 52-138 166-243 (358)
249 PRK06354 pyruvate kinase; Prov 37.6 1E+02 0.0022 27.1 5.7 45 119-172 366-410 (590)
250 PRK00509 argininosuccinate syn 37.6 2.4E+02 0.0052 23.4 11.8 37 42-81 3-39 (399)
251 PLN02461 Probable pyruvate kin 37.1 1E+02 0.0022 26.5 5.6 43 118-169 383-425 (511)
252 TIGR02766 crypt_chrom_pln cryp 36.8 2.6E+02 0.0056 23.6 11.6 107 52-168 10-122 (475)
253 PF14582 Metallophos_3: Metall 36.5 72 0.0016 24.5 4.1 18 155-173 83-100 (255)
254 PRK05234 mgsA methylglyoxal sy 36.2 1.5E+02 0.0032 20.6 10.8 102 41-166 4-110 (142)
255 COG0358 DnaG DNA primase (bact 36.2 1E+02 0.0023 26.7 5.7 39 39-77 288-327 (568)
256 PRK13606 LPPG:FO 2-phospho-L-l 36.2 1.5E+02 0.0032 23.7 6.0 48 117-170 174-223 (303)
257 PLN02765 pyruvate kinase 36.2 1E+02 0.0023 26.5 5.5 43 118-169 396-438 (526)
258 PRK09197 fructose-bisphosphate 35.9 1.5E+02 0.0033 24.1 6.1 50 117-167 32-97 (350)
259 TIGR01520 FruBisAldo_II_A fruc 35.7 1.7E+02 0.0038 23.9 6.4 52 116-168 37-105 (357)
260 PTZ00066 pyruvate kinase; Prov 35.5 1.3E+02 0.0027 26.0 5.9 46 118-172 399-444 (513)
261 TIGR02069 cyanophycinase cyano 35.5 2E+02 0.0044 22.0 8.0 22 54-75 13-34 (250)
262 KOG1014 17 beta-hydroxysteroid 35.4 2.3E+02 0.0051 22.7 7.3 81 42-137 49-133 (312)
263 cd00947 TBP_aldolase_IIB Tagat 35.3 1.1E+02 0.0024 23.9 5.2 52 116-168 23-75 (276)
264 PRK09206 pyruvate kinase; Prov 35.3 1.2E+02 0.0026 25.8 5.7 46 118-172 358-403 (470)
265 PRK00843 egsA NAD(P)-dependent 35.2 2.3E+02 0.005 22.8 7.3 17 119-135 76-92 (350)
266 cd05569 PTS_IIB_fructose PTS_I 35.2 99 0.0021 19.8 4.2 45 97-141 20-64 (96)
267 COG0300 DltE Short-chain dehyd 35.1 2.2E+02 0.0047 22.2 9.6 84 40-139 5-93 (265)
268 cd01400 6PGL 6PGL: 6-Phosphogl 34.6 1.9E+02 0.0042 21.5 10.4 107 42-152 23-141 (219)
269 PRK05826 pyruvate kinase; Prov 34.6 1.3E+02 0.0029 25.5 5.9 46 118-172 360-406 (465)
270 COG2876 AroA 3-deoxy-D-arabino 34.5 1.1E+02 0.0023 24.0 4.8 91 44-140 47-138 (286)
271 PF02878 PGM_PMM_I: Phosphoglu 34.3 1.4E+02 0.0031 20.2 5.2 39 41-79 40-78 (137)
272 PRK07998 gatY putative fructos 33.8 1.2E+02 0.0026 23.9 5.2 50 117-167 29-79 (283)
273 COG4671 Predicted glycosyl tra 33.7 2.7E+02 0.0059 22.9 8.9 109 42-177 220-329 (400)
274 cd04731 HisF The cyclase subun 33.7 1.4E+02 0.0031 22.4 5.6 51 119-170 151-201 (243)
275 PRK10966 exonuclease subunit S 33.6 1.5E+02 0.0032 24.6 6.0 15 152-167 92-106 (407)
276 KOG0780 Signal recognition par 33.0 3E+02 0.0064 23.2 10.2 95 44-149 105-202 (483)
277 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.0 1.1E+02 0.0025 19.9 4.5 37 41-78 46-82 (126)
278 smart00493 TOPRIM topoisomeras 33.0 77 0.0017 18.7 3.3 20 43-62 49-68 (76)
279 COG1433 Uncharacterized conser 32.9 1.4E+02 0.003 20.3 4.8 40 120-170 55-94 (121)
280 PRK00766 hypothetical protein; 32.9 1.7E+02 0.0038 21.6 5.6 57 107-168 43-104 (194)
281 cd06361 PBP1_GPC6A_like Ligand 32.1 2.8E+02 0.0062 22.7 12.2 98 40-140 171-268 (403)
282 PF01751 Toprim: Toprim domain 32.0 95 0.0021 19.7 3.8 28 41-68 60-87 (100)
283 PF13155 Toprim_2: Toprim-like 32.0 1.1E+02 0.0024 19.0 4.1 26 42-67 48-73 (96)
284 PRK06372 translation initiatio 32.0 2.4E+02 0.0052 21.8 6.5 59 103-170 131-193 (253)
285 TIGR03183 DNA_S_dndC putative 31.7 3.2E+02 0.0069 23.1 8.9 38 42-79 14-56 (447)
286 PF03162 Y_phosphatase2: Tyros 31.4 1.5E+02 0.0033 21.1 5.0 69 103-172 29-101 (164)
287 PF04900 Fcf1: Fcf1; InterPro 31.3 1.4E+02 0.0031 19.1 4.6 44 116-171 51-94 (101)
288 PF03808 Glyco_tran_WecB: Glyc 31.1 2E+02 0.0043 20.5 6.6 45 117-168 88-132 (172)
289 COG0473 LeuB Isocitrate/isopro 31.0 1E+02 0.0022 25.0 4.4 29 51-79 155-184 (348)
290 PF01902 ATP_bind_4: ATP-bindi 30.9 1.7E+02 0.0037 22.0 5.4 89 43-139 2-94 (218)
291 COG1570 XseA Exonuclease VII, 30.9 67 0.0015 26.9 3.5 50 116-167 174-230 (440)
292 TIGR01391 dnaG DNA primase, ca 30.6 2.1E+02 0.0046 23.7 6.5 37 41-77 300-336 (415)
293 cd07388 MPP_Tt1561 Thermus the 30.5 1.5E+02 0.0033 22.3 5.2 21 118-138 19-39 (224)
294 TIGR00259 thylakoid_BtpA membr 30.4 2.6E+02 0.0056 21.7 8.1 48 118-168 158-206 (257)
295 TIGR02855 spore_yabG sporulati 30.3 2.5E+02 0.0055 22.1 6.3 47 93-140 116-163 (283)
296 PRK00090 bioD dithiobiotin syn 30.2 1.6E+02 0.0036 21.5 5.4 38 130-169 103-140 (222)
297 COG0707 MurG UDP-N-acetylgluco 30.1 3E+02 0.0066 22.4 10.5 101 42-173 183-283 (357)
298 PLN00096 isocitrate dehydrogen 30.1 3.2E+02 0.007 22.7 9.1 37 43-79 166-203 (393)
299 PF03575 Peptidase_S51: Peptid 30.1 61 0.0013 22.6 2.8 7 133-139 70-76 (154)
300 PF13580 SIS_2: SIS domain; PD 30.0 1.2E+02 0.0026 20.6 4.3 35 40-75 102-136 (138)
301 PF01261 AP_endonuc_2: Xylose 30.0 2E+02 0.0044 20.3 7.5 78 55-133 70-158 (213)
302 COG0669 CoaD Phosphopantethein 29.9 2.1E+02 0.0046 20.5 9.4 80 52-144 16-96 (159)
303 PF11215 DUF3010: Protein of u 29.8 2E+02 0.0043 20.1 5.6 51 120-170 51-102 (138)
304 COG0069 GltB Glutamate synthas 29.8 2.9E+02 0.0063 23.7 7.0 50 109-165 306-355 (485)
305 PF09043 Lys-AminoMut_A: D-Lys 29.6 3.2E+02 0.0069 23.1 7.0 46 108-153 148-196 (509)
306 cd00840 MPP_Mre11_N Mre11 nucl 29.6 1.3E+02 0.0029 21.7 4.7 7 163-169 77-83 (223)
307 COG0794 GutQ Predicted sugar p 29.5 1.4E+02 0.0031 22.2 4.7 44 37-81 82-125 (202)
308 PF14097 SpoVAE: Stage V sporu 29.5 2.2E+02 0.0049 20.7 6.0 47 119-166 40-86 (180)
309 PRK10481 hypothetical protein; 29.4 2.5E+02 0.0055 21.2 7.6 55 106-168 153-212 (224)
310 PRK13398 3-deoxy-7-phosphohept 29.4 2.7E+02 0.0059 21.6 8.9 82 52-140 38-120 (266)
311 TIGR02764 spore_ybaN_pdaB poly 29.3 2.2E+02 0.0047 20.4 10.9 127 42-170 6-159 (191)
312 COG1103 Archaea-specific pyrid 29.3 2.9E+02 0.0063 22.0 6.4 54 116-170 170-233 (382)
313 cd06375 PBP1_mGluR_groupII Lig 29.2 3.4E+02 0.0074 22.7 11.5 23 118-140 244-266 (458)
314 COG0608 RecJ Single-stranded D 29.1 3.6E+02 0.0078 22.9 9.6 88 40-139 35-122 (491)
315 PF02142 MGS: MGS-like domain 29.1 41 0.00088 21.4 1.6 44 121-166 51-94 (95)
316 PLN02476 O-methyltransferase 28.8 1.8E+02 0.004 22.8 5.5 42 99-140 160-204 (278)
317 PRK14177 bifunctional 5,10-met 28.8 1.6E+02 0.0034 23.3 5.1 49 118-174 142-195 (284)
318 cd03115 SRP The signal recogni 28.8 2.1E+02 0.0045 20.0 9.5 90 44-144 4-96 (173)
319 PRK07315 fructose-bisphosphate 28.8 1.9E+02 0.0041 22.8 5.6 51 116-167 28-82 (293)
320 cd08170 GlyDH Glycerol dehydro 28.8 3.1E+02 0.0066 22.0 11.7 61 102-170 45-109 (351)
321 KOG2310 DNA repair exonuclease 28.7 53 0.0012 28.4 2.6 21 118-138 40-60 (646)
322 COG1737 RpiR Transcriptional r 28.5 1E+02 0.0022 23.9 4.1 38 40-78 176-213 (281)
323 cd05014 SIS_Kpsf KpsF-like pro 28.5 1.4E+02 0.0029 19.6 4.3 35 42-77 48-82 (128)
324 COG3640 CooC CO dehydrogenase 28.5 1.5E+02 0.0032 22.9 4.7 37 39-75 154-191 (255)
325 PRK11106 queuosine biosynthesi 28.5 2.6E+02 0.0057 21.2 8.9 36 42-81 2-37 (231)
326 TIGR00167 cbbA ketose-bisphosp 28.5 2.2E+02 0.0047 22.5 5.9 51 116-167 28-82 (288)
327 TIGR00175 mito_nad_idh isocitr 28.3 2.8E+02 0.006 22.4 6.5 28 52-79 145-173 (333)
328 COG2100 Predicted Fe-S oxidore 28.3 3.3E+02 0.0072 22.2 7.1 72 96-169 179-262 (414)
329 KOG3111 D-ribulose-5-phosphate 28.2 2.6E+02 0.0056 20.9 8.3 80 58-152 77-156 (224)
330 TIGR02089 TTC tartrate dehydro 28.2 2.3E+02 0.0049 23.1 6.0 28 52-79 164-191 (352)
331 cd07402 MPP_GpdQ Enterobacter 28.1 1.8E+02 0.0039 21.4 5.3 17 155-172 64-80 (240)
332 PTZ00408 NAD-dependent deacety 28.0 2.7E+02 0.0059 21.2 6.2 54 113-174 154-211 (242)
333 PF12965 DUF3854: Domain of un 27.7 1.8E+02 0.0039 19.9 4.7 26 102-127 98-123 (130)
334 TIGR00421 ubiX_pad polyprenyl 27.6 1.1E+02 0.0024 22.2 3.8 33 43-76 1-33 (181)
335 PRK12724 flagellar biosynthesi 27.6 3.8E+02 0.0081 22.6 10.0 86 45-144 228-313 (432)
336 TIGR01768 GGGP-family geranylg 27.6 1.8E+02 0.0039 22.0 5.0 51 119-173 16-66 (223)
337 cd05006 SIS_GmhA Phosphoheptos 27.5 1.3E+02 0.0029 21.3 4.3 37 41-78 101-137 (177)
338 TIGR00177 molyb_syn molybdenum 27.1 2.1E+02 0.0046 19.6 5.6 8 163-170 122-129 (144)
339 TIGR03127 RuMP_HxlB 6-phospho 26.9 1.4E+02 0.003 21.2 4.3 35 42-77 73-107 (179)
340 cd00453 FTBP_aldolase_II Fruct 26.9 1.7E+02 0.0037 23.7 5.0 52 116-168 23-91 (340)
341 COG0036 Rpe Pentose-5-phosphat 26.8 2.8E+02 0.0062 21.0 9.0 85 58-157 74-158 (220)
342 PRK09417 mogA molybdenum cofac 26.4 2.7E+02 0.0058 20.5 7.5 18 120-137 56-73 (193)
343 PF06506 PrpR_N: Propionate ca 26.4 1.4E+02 0.003 21.3 4.2 51 109-172 10-63 (176)
344 TIGR03572 WbuZ glycosyl amidat 26.4 2.6E+02 0.0056 20.8 5.8 51 119-170 155-205 (232)
345 PF09967 DUF2201: VWA-like dom 26.2 1.4E+02 0.003 20.1 4.0 36 44-79 1-41 (126)
346 PRK13399 fructose-1,6-bisphosp 26.2 2.4E+02 0.0052 23.0 5.8 51 116-167 28-80 (347)
347 cd05017 SIS_PGI_PMI_1 The memb 26.2 1.6E+02 0.0035 19.3 4.3 33 42-75 44-76 (119)
348 COG2204 AtoC Response regulato 26.1 4.1E+02 0.009 22.6 7.9 68 98-173 20-87 (464)
349 PRK08417 dihydroorotase; Provi 26.1 58 0.0013 26.6 2.4 28 53-80 179-206 (386)
350 PF02568 ThiI: Thiamine biosyn 25.9 2.8E+02 0.006 20.5 9.8 35 42-80 4-38 (197)
351 cd07392 MPP_PAE1087 Pyrobaculu 25.9 1.8E+02 0.004 20.2 4.8 17 155-172 46-62 (188)
352 COG2201 CheB Chemotaxis respon 25.8 3.7E+02 0.008 22.0 8.0 52 116-172 33-84 (350)
353 PRK08057 cobalt-precorrin-6x r 25.7 1.6E+02 0.0035 22.6 4.6 42 124-172 184-225 (248)
354 PLN02331 phosphoribosylglycina 25.6 2.9E+02 0.0062 20.6 9.8 83 43-140 1-88 (207)
355 PLN02589 caffeoyl-CoA O-methyl 25.6 3.1E+02 0.0067 21.0 7.2 43 99-141 121-167 (247)
356 cd01424 MGS_CPS_II Methylglyox 25.5 1.9E+02 0.0042 18.6 6.3 99 43-167 2-100 (110)
357 PLN02590 probable tyrosine dec 25.5 3.6E+02 0.0078 23.4 7.1 87 51-141 235-328 (539)
358 PRK15029 arginine decarboxylas 25.4 5.2E+02 0.011 23.6 8.9 72 98-173 24-96 (755)
359 PHA03368 DNA packaging termina 25.4 5.1E+02 0.011 23.5 10.0 97 40-139 576-694 (738)
360 PLN00118 isocitrate dehydrogen 25.2 2.5E+02 0.0054 23.1 5.8 79 51-137 183-262 (372)
361 PRK04204 RNA 3'-terminal-phosp 25.0 3.1E+02 0.0067 22.3 6.3 40 45-84 2-43 (343)
362 COG4770 Acetyl/propionyl-CoA c 24.9 2.1E+02 0.0045 25.1 5.4 42 120-165 89-130 (645)
363 PRK04169 geranylgeranylglycery 24.8 1.7E+02 0.0036 22.3 4.5 48 122-173 24-71 (232)
364 TIGR00735 hisF imidazoleglycer 24.7 2.6E+02 0.0057 21.2 5.7 51 119-170 157-207 (254)
365 PF09936 Methyltrn_RNA_4: SAM- 24.7 2.9E+02 0.0062 20.3 6.7 57 114-172 86-142 (185)
366 PRK02628 nadE NAD synthetase; 24.7 3E+02 0.0064 24.6 6.6 40 38-77 358-400 (679)
367 PRK12723 flagellar biosynthesi 24.5 4.1E+02 0.0088 22.0 9.0 113 44-171 178-296 (388)
368 PF01380 SIS: SIS domain SIS d 24.5 2.1E+02 0.0045 18.6 4.6 35 42-77 54-88 (131)
369 TIGR03729 acc_ester putative p 24.4 2.1E+02 0.0046 21.4 5.1 9 109-117 33-41 (239)
370 PF10649 DUF2478: Protein of u 24.4 1.6E+02 0.0035 21.0 4.1 44 121-168 84-129 (159)
371 PF05582 Peptidase_U57: YabG p 24.3 3.1E+02 0.0068 21.7 5.9 47 93-140 117-164 (287)
372 PRK14561 hypothetical protein; 24.3 2.9E+02 0.0062 20.1 9.8 84 43-142 2-106 (194)
373 KOG1552 Predicted alpha/beta h 24.2 1.8E+02 0.0038 22.6 4.5 77 94-173 115-203 (258)
374 PF01182 Glucosamine_iso: Gluc 24.1 2.9E+02 0.0063 20.1 5.7 109 42-153 21-145 (199)
375 cd02065 B12-binding_like B12 b 24.0 2.1E+02 0.0046 18.5 6.1 38 102-140 23-60 (125)
376 PRK12726 flagellar biosynthesi 24.0 4.3E+02 0.0093 22.1 9.1 95 42-147 206-302 (407)
377 PRK08997 isocitrate dehydrogen 23.6 4E+02 0.0086 21.6 6.9 28 52-79 147-175 (334)
378 cd01971 Nitrogenase_VnfN_like 23.6 1.6E+02 0.0035 24.4 4.6 27 116-142 102-128 (427)
379 COG2179 Predicted hydrolase of 23.6 2.6E+02 0.0057 20.3 5.0 34 42-76 36-69 (175)
380 PRK10416 signal recognition pa 23.5 3.9E+02 0.0083 21.3 10.6 94 44-148 118-214 (318)
381 PRK02090 phosphoadenosine phos 23.4 3.1E+02 0.0068 20.7 5.9 36 42-81 41-76 (241)
382 TIGR00930 2a30 K-Cl cotranspor 23.3 6.3E+02 0.014 23.8 12.4 123 42-170 576-709 (953)
383 PF01993 MTD: methylene-5,6,7, 23.3 1.5E+02 0.0033 22.9 3.9 46 120-170 49-94 (276)
384 PRK07667 uridine kinase; Provi 23.2 2E+02 0.0043 20.8 4.6 49 121-170 5-53 (193)
385 TIGR00441 gmhA phosphoheptose 23.2 2.1E+02 0.0045 19.9 4.5 35 42-77 80-114 (154)
386 PRK10886 DnaA initiator-associ 23.2 2E+02 0.0043 21.2 4.5 40 39-79 107-146 (196)
387 TIGR00737 nifR3_yhdG putative 23.1 3.8E+02 0.0082 21.2 11.7 76 94-170 119-200 (319)
388 COG0279 GmhA Phosphoheptose is 23.1 1.7E+02 0.0036 21.3 3.9 30 42-72 110-139 (176)
389 PRK14025 multifunctional 3-iso 23.1 3.4E+02 0.0074 21.9 6.1 28 52-79 140-172 (330)
390 cd07410 MPP_CpdB_N Escherichia 23.0 3.5E+02 0.0076 20.7 6.8 46 123-168 176-224 (277)
391 PRK14722 flhF flagellar biosyn 23.0 4.3E+02 0.0094 21.7 9.3 92 44-148 141-233 (374)
392 COG1619 LdcA Uncharacterized p 22.9 4E+02 0.0087 21.3 6.8 90 49-140 19-111 (313)
393 PF13727 CoA_binding_3: CoA-bi 22.9 1E+02 0.0022 21.3 2.9 46 119-169 130-175 (175)
394 cd05710 SIS_1 A subgroup of th 22.9 2.3E+02 0.005 18.6 4.5 36 42-78 48-83 (120)
395 smart00732 YqgFc Likely ribonu 22.5 2E+02 0.0044 17.8 5.3 54 118-172 39-94 (99)
396 PRK07084 fructose-bisphosphate 22.4 2.7E+02 0.0058 22.5 5.4 51 116-167 34-90 (321)
397 PRK09875 putative hydrolase; P 22.2 3.5E+02 0.0076 21.3 6.0 38 103-140 149-188 (292)
398 PLN02828 formyltetrahydrofolat 22.1 3.9E+02 0.0084 20.9 10.1 86 41-140 70-157 (268)
399 TIGR00486 YbgI_SA1388 dinuclea 22.1 1.4E+02 0.0031 22.8 3.7 15 39-53 34-48 (249)
400 PRK10840 transcriptional regul 22.1 3.1E+02 0.0067 19.7 5.8 46 122-170 41-88 (216)
401 PF02729 OTCace_N: Aspartate/o 22.0 2.3E+02 0.005 19.6 4.5 40 116-166 81-120 (142)
402 TIGR00364 exsB protein. This p 21.9 3.2E+02 0.0069 19.8 11.5 23 120-142 101-123 (201)
403 PRK13936 phosphoheptose isomer 21.8 2.2E+02 0.0047 20.8 4.5 36 41-77 111-146 (197)
404 PRK13054 lipid kinase; Reviewe 21.8 3.9E+02 0.0085 20.8 7.4 35 40-74 2-36 (300)
405 PF01207 Dus: Dihydrouridine s 21.7 4.1E+02 0.0089 21.0 8.2 74 93-167 109-188 (309)
406 cd00466 DHQase_II Dehydroquina 21.7 2.8E+02 0.0062 19.4 4.7 62 100-169 35-98 (140)
407 PRK09490 metH B12-dependent me 21.7 3.6E+02 0.0078 26.2 6.7 69 97-169 770-839 (1229)
408 PF00107 ADH_zinc_N: Zinc-bind 21.7 1.5E+02 0.0033 19.3 3.5 16 61-76 6-21 (130)
409 cd04795 SIS SIS domain. SIS (S 21.6 1.9E+02 0.0042 17.2 4.2 35 41-76 47-81 (87)
410 COG1911 RPL30 Ribosomal protei 21.6 2.3E+02 0.005 18.5 4.0 47 120-172 25-71 (100)
411 PRK05667 dnaG DNA primase; Val 21.5 3.6E+02 0.0077 23.7 6.4 37 42-78 297-336 (580)
412 COG4126 Hydantoin racemase [Am 21.5 1.4E+02 0.0031 22.6 3.5 38 120-166 164-201 (230)
413 TIGR00829 FRU PTS system, fruc 21.1 2.2E+02 0.0049 17.7 3.9 43 98-140 20-62 (85)
414 COG1412 Uncharacterized protei 21.1 3E+02 0.0064 19.1 4.9 44 115-171 83-126 (136)
415 COG1010 CobJ Precorrin-3B meth 21.0 2.4E+02 0.0052 21.7 4.6 60 117-176 140-201 (249)
416 PRK13057 putative lipid kinase 20.9 4E+02 0.0086 20.6 6.1 7 163-169 75-81 (287)
417 cd02801 DUS_like_FMN Dihydrour 20.9 3.5E+02 0.0075 19.9 10.6 51 118-169 139-190 (231)
418 TIGR00715 precor6x_red precorr 20.8 2.6E+02 0.0057 21.5 5.0 42 124-172 191-233 (256)
419 PRK07627 dihydroorotase; Provi 20.8 82 0.0018 26.1 2.3 28 53-80 210-237 (425)
420 PRK05395 3-dehydroquinate dehy 20.8 2.5E+02 0.0054 19.8 4.3 62 100-169 37-100 (146)
421 CHL00076 chlB photochlorophyll 20.8 1.9E+02 0.0041 24.8 4.6 52 118-170 73-124 (513)
422 PF13500 AAA_26: AAA domain; P 20.8 1.5E+02 0.0033 21.3 3.6 38 130-169 99-136 (199)
423 KOG2781 U3 small nucleolar rib 20.7 2.7E+02 0.0059 21.6 4.8 20 117-138 92-111 (290)
424 KOG2584 Dihydroorotase and rel 20.7 1.3E+02 0.0027 25.5 3.3 29 53-81 230-258 (522)
425 PF12745 HGTP_anticodon2: Anti 20.6 2.1E+02 0.0045 22.4 4.4 38 102-139 29-66 (273)
426 PRK01269 tRNA s(4)U8 sulfurtra 20.5 5.3E+02 0.012 21.9 11.6 40 37-80 173-212 (482)
427 COG1618 Predicted nucleotide k 20.5 2.1E+02 0.0046 20.8 4.0 45 120-168 92-136 (179)
428 cd02812 PcrB_like PcrB_like pr 20.4 2.5E+02 0.0055 21.2 4.7 51 119-173 14-65 (219)
429 COG1440 CelA Phosphotransferas 20.1 2.7E+02 0.0059 18.3 4.7 62 100-173 23-84 (102)
430 PRK13602 putative ribosomal pr 20.1 2E+02 0.0042 17.9 3.5 17 121-137 44-60 (82)
431 COG1798 DPH5 Diphthamide biosy 20.1 3.6E+02 0.0077 21.0 5.3 56 116-172 177-240 (260)
432 PRK14170 bifunctional 5,10-met 20.1 3.1E+02 0.0068 21.6 5.2 48 119-174 141-193 (284)
433 PF02952 Fucose_iso_C: L-fucos 20.0 1.9E+02 0.0041 19.7 3.7 32 105-136 110-141 (142)
434 COG1036 Archaeal flavoproteins 20.0 1.2E+02 0.0025 22.0 2.6 48 125-174 83-137 (187)
No 1
>PRK15005 universal stress protein F; Provisional
Probab=99.93 E-value=2.5e-24 Score=151.30 Aligned_cols=127 Identities=17% Similarity=0.279 Sum_probs=100.3
Q ss_pred CCCeEEEEecCCcc--hHHHHHHHHHHhccCCCEEEEEEEecCCchh-----------h----HHHHHHHHHHHHHHHHh
Q 030298 40 RGRDILIAVDHGPN--SKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-----------I----VYDMSQGLMEKLAIEAM 102 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~--s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-----------~----~~~~~~~~l~~~~~~~~ 102 (179)
||++||+|+|+|+. +..++++|..+|+..+++++++||.+..... . ..+...+.+++..+. +
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 79 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKK-F 79 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHH-h
Confidence 47999999999998 5799999999999999999999998753210 0 011112233332222 2
Q ss_pred hhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
...+.+++.++..|++.+.|+++++++++||||||++ ++.+.++++||++++|+++++ ||||+||
T Consensus 80 ~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~~llGS~a~~vl~~a~-cpVlvVr 144 (144)
T PRK15005 80 KLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASH-RPDITTYLLGSNAAAVVRHAE-CSVLVVR 144 (144)
T ss_pred CCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCC-CCCchheeecchHHHHHHhCC-CCEEEeC
Confidence 2345677888889999999999999999999999988 567888999999999999999 9999996
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.93 E-value=3e-24 Score=150.79 Aligned_cols=127 Identities=25% Similarity=0.272 Sum_probs=99.0
Q ss_pred CCCeEEEEecCCc--chHHHHHHHHHHhccCCCEEEEEEEecCCchh------h----HHHHHHHHHHHHHHHH---hhh
Q 030298 40 RGRDILIAVDHGP--NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------I----VYDMSQGLMEKLAIEA---MDV 104 (179)
Q Consensus 40 ~~~~Ilv~vd~s~--~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------~----~~~~~~~~l~~~~~~~---~~~ 104 (179)
||++||+|+|+|+ .+..++++|..+|+. +++++++||.+..... . ..+...+..++.++.. +..
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999994 899999999999987 4699999998753211 0 1111112222222222 223
Q ss_pred cCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 105 AMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 105 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.++++++..|++.+.|+++++++++||||||+++++ +.++++||++++++++++ ||||+||
T Consensus 80 ~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~-~pVLvV~ 142 (142)
T PRK15456 80 DPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHAN-LPVLVVR 142 (142)
T ss_pred CCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCC-CCEEEeC
Confidence 46678888899999999999999999999999999876 788899999999999999 9999996
No 3
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.92 E-value=2.2e-23 Score=144.03 Aligned_cols=129 Identities=30% Similarity=0.381 Sum_probs=103.8
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHH----HHHH-------HHHhhhcCce
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLM----EKLA-------IEAMDVAMVR 108 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~ 108 (179)
|+++||||+|+++.+..++++|..+|...+++++++||.+............... .... .......+..
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIV 80 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccce
Confidence 5799999999999999999999999999999999999998765433221111000 0000 1122334566
Q ss_pred eEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 109 TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 109 ~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
....+..|++.+.|++++++.++|+||||+++++++.++++||++++|+++++ |||++||
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~ 140 (140)
T PF00582_consen 81 IEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVVP 140 (140)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEEE
T ss_pred eEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEeC
Confidence 77777889999999999999999999999999999999999999999999999 9999997
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.91 E-value=1.5e-23 Score=147.40 Aligned_cols=130 Identities=14% Similarity=0.174 Sum_probs=99.2
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh---h-------HHHHHHHHHHHHHHHHhhh-cCc
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ---I-------VYDMSQGLMEKLAIEAMDV-AMV 107 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~---~-------~~~~~~~~l~~~~~~~~~~-~~~ 107 (179)
++|++||||+|+|+.+..++++|..+|+..+++++++||.+..... . ..+..++..+..++...+. ...
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWP 80 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999999999999998743210 0 0111112222222222221 123
Q ss_pred eeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 108 RTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 108 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.++..+..|++.+.|+++|++.++||||||++ ++.+.+++ | ++++++++++ ||||+||...
T Consensus 81 ~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~-~pVLvv~~~~ 141 (142)
T PRK09982 81 KTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMS-ADLLIVPFID 141 (142)
T ss_pred cceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCC-CCEEEecCCC
Confidence 46677788999999999999999999999976 77788877 5 9999999999 9999998754
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.91 E-value=2.5e-23 Score=146.33 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=96.9
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh----------HHHHHHHHHHHHHHHHhhhcCce
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI----------VYDMSQGLMEKLAIEAMDVAMVR 108 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~ 108 (179)
++|++||+|+|+|+.+..|+++|..+|+..+++++++||........ ..+...+.....++......+++
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYP 80 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36899999999999999999999999999999999999943211100 01111122222233333445666
Q ss_pred eE-EEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 109 TK-ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 109 ~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
+. .++..|++.+.|+++|++.++||||||+++ +.+ +. +||++++++++++ ||||+||...
T Consensus 81 ~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~-~~-lgSva~~v~~~a~-~pVLvv~~~~ 141 (144)
T PRK15118 81 ITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW-SK-LMSSARQLINTVH-VDMLIVPLRD 141 (144)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHH-HH-HHHHHHHHHhhCC-CCEEEecCCc
Confidence 43 455679999999999999999999999995 333 33 4799999999999 9999998653
No 6
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.90 E-value=1.2e-22 Score=143.07 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=101.0
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh-----------HH----HHHHHHHHHHHHHHhhhcCc
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-----------VY----DMSQGLMEKLAIEAMDVAMV 107 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~-----------~~----~~~~~~l~~~~~~~~~~~~~ 107 (179)
+||||+|+++.+..+++||.++++..+++++++||.+...... .. +..++.++... ..+...++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYR-CFCSRKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCC
Confidence 5999999999999999999999999999999999987532110 00 11122222222 22334577
Q ss_pred eeEEEEecC-ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccC-chhHHHHhcCCC-CcEEEEcC
Q 030298 108 RTKARIVEG-DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQG-SVGEYCLHHCKT-APIIVVPG 170 (179)
Q Consensus 108 ~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~g-s~~~~ll~~~~~-~pVlvv~~ 170 (179)
+++..+..| ++.+.|+++|++.++|+||||+++++.+.++++| |++.+++++++. ||||+|+.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 888888776 8999999999999999999999999999998887 699999999875 99999976
No 7
>PRK10116 universal stress protein UspC; Provisional
Probab=99.90 E-value=1.8e-22 Score=141.52 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=101.2
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh---------hHHHHHHHHHHHHHHHHhhhcCcee
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ---------IVYDMSQGLMEKLAIEAMDVAMVRT 109 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~ 109 (179)
++|++|||++|++..+..++++|..+|+.++++++++|+.+..... ...+...+..++.+++.....+++.
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDADYPI 80 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 3689999999999999999999999999999999999997643210 0011112222223333334445544
Q ss_pred -EEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 110 -KARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 110 -~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..++..|++.+.|++++++.++||||||+++++.+.+++ |++++++++++ ||||+||..+
T Consensus 81 ~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~-~pVLvv~~~~ 141 (142)
T PRK10116 81 EKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSE-VDVLLVPLTG 141 (142)
T ss_pred EEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCC-CCEEEEeCCC
Confidence 355677999999999999999999999999988888764 89999999999 9999999754
No 8
>PRK11175 universal stress protein UspE; Provisional
Probab=99.90 E-value=2.7e-22 Score=157.28 Aligned_cols=150 Identities=20% Similarity=0.251 Sum_probs=114.3
Q ss_pred hhhhcccccccccccCCcccccccccccCCCeEEEEecCCcch-------HHHHHHHHHHhccC-CCEEEEEEEecCCch
Q 030298 12 SWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNS-------KHAFDWALIHLCRL-ADTIHLVHAVSSVQN 83 (179)
Q Consensus 12 ~~r~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s-------~~al~~a~~la~~~-~~~l~~v~v~~~~~~ 83 (179)
=.|.++||+++.+... +..+++||+|+|+++.+ ..++++|..+|+.+ +++++++||.+....
T Consensus 133 l~~~~~~pvlvv~~~~----------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~ 202 (305)
T PRK11175 133 LLRKCPCPVLMVKDQD----------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPI 202 (305)
T ss_pred HHhcCCCCEEEecccc----------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcch
Confidence 3488999999888632 12358999999998653 67999999999998 999999999764321
Q ss_pred h-----------hHHHHHHHHHHHHHHHHhhhcCcee-EEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCc
Q 030298 84 Q-----------IVYDMSQGLMEKLAIEAMDVAMVRT-KARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGS 151 (179)
Q Consensus 84 ~-----------~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs 151 (179)
. ...+..++...+..++..+..++.. ..++..|++.+.|.+++++.++||||||+++++++.++++||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS 282 (305)
T PRK11175 203 NIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGN 282 (305)
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecc
Confidence 1 0111112222222333334445543 456678999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCCcEEEEcCCC
Q 030298 152 VGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 152 ~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++++|+++++ ||||+||+.+
T Consensus 283 ~a~~v~~~~~-~pVLvv~~~~ 302 (305)
T PRK11175 283 TAEHVIDHLN-CDLLAIKPDG 302 (305)
T ss_pred hHHHHHhcCC-CCEEEEcCCC
Confidence 9999999999 9999998754
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.88 E-value=2.9e-21 Score=133.33 Aligned_cols=125 Identities=17% Similarity=0.185 Sum_probs=102.1
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------hHHHHHHHHHHHHHHHHhhhcCceeEEEEec-
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------IVYDMSQGLMEKLAIEAMDVAMVRTKARIVE- 115 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~- 115 (179)
+||||+|+++.+..++++|..+|+..+++++++|+.+..... ...+..++.++. ........|++++..+..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQ-AERIAASLGVPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHH-HHHHhhhcCCceEEEEEec
Confidence 599999999999999999999999999999999998754321 111222333333 333344567888877654
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
|++.++|+++++++++|+||||.++++.+.++++||++.+++++++ |||++++
T Consensus 80 ~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~-~pvlvv~ 132 (132)
T cd01988 80 HDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAP-CDVAVVK 132 (132)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCC-CCEEEeC
Confidence 7999999999999999999999999999888999999999999999 9999986
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.87 E-value=3.1e-21 Score=132.22 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=100.0
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
+||||+|+++.+..++++|..+|...+++++++||.+..... ..+..++.++.+.+. .+..+++.. .+..|++.+.|
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~I 77 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR-LSEAERRRLAEALRL-AEELGAEVV-TLPGDDVAEAI 77 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc-CCHHHHHHHHHHHHH-HHHcCCEEE-EEeCCcHHHHH
Confidence 599999999999999999999999999999999998865421 122334445444333 344455433 33457899999
Q ss_pred HHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC-CCCcEEEEc
Q 030298 123 CKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC-KTAPIIVVP 169 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~-~~~pVlvv~ 169 (179)
.++++++++|+||||+++++++.++++||++++|++++ + |||+|++
T Consensus 78 ~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~-~~v~v~~ 124 (124)
T cd01987 78 VEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGN-IDVHIVA 124 (124)
T ss_pred HHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCC-CeEEEeC
Confidence 99999999999999999999999999999999999999 8 9999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.86 E-value=6.1e-21 Score=149.58 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=104.4
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-------hHH--------HHHHHHHHHHHHHHhh
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------IVY--------DMSQGLMEKLAIEAMD 103 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-------~~~--------~~~~~~l~~~~~~~~~ 103 (179)
++|++||||+|+++.+..|+++|+.+|+..+++++++|+.+..... ... +..++.+++..+. ..
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 79 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKP-YL 79 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 4789999999999999999999999999999999999987532110 000 1111222322222 23
Q ss_pred hcCceeEEEEe-cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 104 VAMVRTKARIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 104 ~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..+++++..+. .|++.++|+++++++++||||||+++++++.++++||++++|+++++ ||||+||..
T Consensus 80 ~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~-~pvlvv~~~ 147 (305)
T PRK11175 80 DAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCP-CPVLMVKDQ 147 (305)
T ss_pred hcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCC-CCEEEeccc
Confidence 45778887666 58999999999999999999999999999999999999999999999 999999974
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.82 E-value=8.9e-19 Score=119.62 Aligned_cols=124 Identities=35% Similarity=0.546 Sum_probs=103.1
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------hHHHHHHHHHHHHHHHHhhhcCceeEEEEecC
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG 116 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g 116 (179)
+||||+|+++.+..++++|..+|+..+++++++|+.+..... ......++.++.+... ....++++...+..|
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREA-LAEAGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHH-HhcCCCceEEEEecC
Confidence 589999999999999999999999999999999998764332 1223334444443333 234578888888889
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
++.+.|.+++++.++|+||||+++++.+.++++|+++++++++++ |||+++
T Consensus 80 ~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~-~pvliv 130 (130)
T cd00293 80 DPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAP-CPVLVV 130 (130)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCC-CCEEeC
Confidence 889999999999999999999999999988999999999999999 999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-17 Score=117.33 Aligned_cols=131 Identities=28% Similarity=0.409 Sum_probs=106.2
Q ss_pred cCCCeEEEEec-CCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhH-----------------HHHHHHHHHHHHHH
Q 030298 39 RRGRDILIAVD-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIV-----------------YDMSQGLMEKLAIE 100 (179)
Q Consensus 39 ~~~~~Ilv~vd-~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~-----------------~~~~~~~l~~~~~~ 100 (179)
.++++|++++| +++.+..+++.+..++...++.+++++|.+....... .....+.++. ...
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAE-AKA 81 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHH-HHH
Confidence 46799999999 9999999999999999999999999998765321100 1122233333 334
Q ss_pred HhhhcCce-eEEEEecCCh-HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 101 AMDVAMVR-TKARIVEGDA-AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 101 ~~~~~~~~-~~~~~~~g~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.....++. +...+..|++ .+.|++++.++++|+||||+++++++.++++||++++++++++ |||+++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~-~pVlvv~~~ 153 (154)
T COG0589 82 LAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAP-CPVLVVRSE 153 (154)
T ss_pred HHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCC-CCEEEEccC
Confidence 44555666 4778888988 7999999999999999999999999999999999999999999 999999875
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.62 E-value=3.5e-14 Score=113.01 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=89.7
Q ss_pred ccCCCeEEEEecCCcchHHHHHHHHHHhccC--CCEEEEEEEecCCchhhH----HHHHHHHHHHHHHHHhh-----hcC
Q 030298 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRL--ADTIHLVHAVSSVQNQIV----YDMSQGLMEKLAIEAMD-----VAM 106 (179)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~~v~v~~~~~~~~~----~~~~~~~l~~~~~~~~~-----~~~ 106 (179)
+++|+|||||+|+|+.+..|+++|+.+|+.. +++++++||.+....... ....++.+++..+...+ ..|
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~g 81 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASS 81 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 4688999999999999999999999999984 699999999875332111 12222333333222221 157
Q ss_pred ceeEEEEec--------CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 107 VRTKARIVE--------GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 107 ~~~~~~~~~--------g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
++++..+.. |++.+.|+++|+++++|+||||..-......-++.+. +.-+.++. |.+=.-
T Consensus 82 V~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~ 149 (357)
T PRK12652 82 VTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPL-ERELARAG-ITYEEA 149 (357)
T ss_pred CceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchH-HHHHHhcC-CceecC
Confidence 888887765 8999999999999999999999874433333334444 33445566 665443
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.58 E-value=2.5e-14 Score=126.44 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=119.5
Q ss_pred cchhhhhhhhhhcccccccccccCCccc----ccccccccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 4 VKEEEEVYSWREVNLPALSPTAAAEPEL----ERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 4 ~~~~~~~~~~r~~~~P~~~~~~~~~~~~----~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
.|-..|+-..|++....+..+++..... .+....|..-++||||+++++.+.+++++|.++|.+++++++++||..
T Consensus 209 ~f~~~nl~~lrelal~~~a~~v~~~~~~~~~~~~~~~~~~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~ 288 (895)
T PRK10490 209 FFRKGNLIALRELALRRTADRVDDQMRAWRDHQGEEKVWHTRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVET 288 (895)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 3445677777777655555554333221 112345677799999999999999999999999999999999999986
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc
Q 030298 80 SVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH 159 (179)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~ 159 (179)
+.......+ .++.+.... +..+..|.++. .+..++++++|++||++++++.||||.++++++ ++.||+++++++.
T Consensus 289 ~~~~~~~~~-~~~~l~~~~-~lA~~lGa~~~-~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~ 363 (895)
T PRK10490 289 PRLHRLPEK-KRRAILSAL-RLAQELGAETA-TLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARL 363 (895)
T ss_pred CCcCcCCHH-HHHHHHHHH-HHHHHcCCEEE-EEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHh
Confidence 543222222 233333333 35566666643 334458999999999999999999999988776 5568999999999
Q ss_pred CCCCcEEEEcCC
Q 030298 160 CKTAPIIVVPGK 171 (179)
Q Consensus 160 ~~~~pVlvv~~~ 171 (179)
+++++|.||+..
T Consensus 364 ~~~idi~iv~~~ 375 (895)
T PRK10490 364 GPDLDLVIVALD 375 (895)
T ss_pred CCCCCEEEEeCC
Confidence 999999999754
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.45 E-value=8.8e-13 Score=111.99 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=126.8
Q ss_pred cchhhhhhhhhhcccccccccccCCcc----cccccccccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 4 VKEEEEVYSWREVNLPALSPTAAAEPE----LERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 4 ~~~~~~~~~~r~~~~P~~~~~~~~~~~----~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
.|-..|+...|++....+..+++.+.. -......|..-.+||||+++++.+...+++|.++|.+++++++++||..
T Consensus 207 FF~~~NL~aLRElALRr~AdrVd~~~~~~~~~~~~~~~~~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~ 286 (890)
T COG2205 207 FFRKGNLTALRELALRRTADRVDDQLRAYRRHKGIEGVWAARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVET 286 (890)
T ss_pred hhccccHHHHHHHHHHHHHHHHhHHHHHHhhcccccccccccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 455677888888876666555543321 0112236777799999999999999999999999999999999999977
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc
Q 030298 80 SVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH 159 (179)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~ 159 (179)
+..... .+.....+... .++.+..|-++. .+..++..++|.+||+.+++..||||.+.+++|..++.|+.++++++.
T Consensus 287 ~~~~~~-~~~~~~~l~~~-~~Lae~lGae~~-~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~ 363 (890)
T COG2205 287 PELHRL-SEKEARRLHEN-LRLAEELGAEIV-TLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLARE 363 (890)
T ss_pred cccccc-cHHHHHHHHHH-HHHHHHhCCeEE-EEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhc
Confidence 654322 22334444443 334455455543 234469999999999999999999999999999999899999999999
Q ss_pred CCCCcEEEEcCCCCC
Q 030298 160 CKTAPIIVVPGKEAG 174 (179)
Q Consensus 160 ~~~~pVlvv~~~~~~ 174 (179)
.+++.|.+|+.+...
T Consensus 364 ~~~idv~ii~~~~~~ 378 (890)
T COG2205 364 APGIDVHIVALDAPP 378 (890)
T ss_pred CCCceEEEeeCCCCc
Confidence 998999999875543
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.56 E-value=3.8e-07 Score=58.22 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=71.9
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~ 123 (179)
|+++++++..|..++.++.+++ ..+.+++++|+. ...+.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------~~~~~~~ 41 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------AFVRILK 41 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH--------------------------------------HHHHHHH
Confidence 6899999999999999999987 457788888875 4566777
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccC-chhHHHHhcCCCCcEEE
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQG-SVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~g-s~~~~ll~~~~~~pVlv 167 (179)
+++++.++|+|++|.+........+.| +.+..+++.++ |||+.
T Consensus 42 ~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~-~~vl~ 85 (86)
T cd01984 42 RLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAG-IPVLT 85 (86)
T ss_pred HHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccC-CceeC
Confidence 888999999999999988888887777 88999999999 99874
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.42 E-value=0.0037 Score=55.80 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=80.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhc--cCCCEEEEEEEecCCchh--------------h----HHHHHHHHHHHHHHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLC--RLADTIHLVHAVSSVQNQ--------------I----VYDMSQGLMEKLAIEA 101 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~--~~~~~l~~v~v~~~~~~~--------------~----~~~~~~~~l~~~~~~~ 101 (179)
-+||+|+...++....+..+-.... +..-.++++|+.+..... . .....++.+. .++..
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~-af~~~ 537 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIIN-AFENY 537 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHH-HHHHH
Confidence 5899999988888888776544322 223479999987732100 0 0001122222 12222
Q ss_pred hhh-cCceeEEEEec---CChHHHHHHHHHHcCCcEEEEeeCCCCCcccc------ccCchhHHHHhcCCCCcEEEEcC
Q 030298 102 MDV-AMVRTKARIVE---GDAAKVICKEAERLKPAAVVIGSRGRGLIQSV------LQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~-~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~------~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+. .++.++..... .+..+.|+..|.+..+++||++-+++....+. .++.+-+++++++| |+|-|+=.
T Consensus 538 ~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~Ap-CsVgIlVD 615 (832)
T PLN03159 538 EQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAP-CSVGILVD 615 (832)
T ss_pred HhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCC-CCEEEEEe
Confidence 211 24555533322 47899999999999999999999875443221 34667899999999 99976644
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.05 E-value=0.014 Score=52.18 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=36.3
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
..+|.+.+=+.+....|+.+|.++++..+-++++++....
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~ 669 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPG 669 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcc
Confidence 4699999999999999999999999998889999998764
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.87 E-value=0.034 Score=40.52 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=62.8
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC------
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG------ 116 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g------ 116 (179)
+|+|++++...|..++..+..++...+.++.++|+....... .....+. .+...+..|++..+.....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~--~~~~~~~----~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPE--SDEEAEF----VQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChh--HHHHHHH----HHHHHHHcCCCEEEEEecchhhccc
Confidence 589999999999999999988877777789999986543211 1111222 2333444566654433211
Q ss_pred ---ChH--------HHHHHHHHHcCCcEEEEeeCCCC
Q 030298 117 ---DAA--------KVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 117 ---~~~--------~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
+.. ..+.++|++++++.|+.|.+...
T Consensus 75 ~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 75 KKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHH
Confidence 122 57788999999999999987543
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.43 E-value=0.1 Score=37.90 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=56.8
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-----C-
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-----G- 116 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----g- 116 (179)
||+|++.+...|..++.....+....+-++.++||...-.... ....+. .++.++..+++..+.... +
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s--~~~~~~----v~~~~~~~~i~~~~~~~~~~~~~~~ 74 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREES--DEEAEF----VEEICEQLGIPLYIVRIDEDRKKGS 74 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCH--HHHHHH----HHHHHHHTT-EEEEEE--CHCCTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc--chhHHH----HHHHHHhcCCceEEEEeeeeecccC
Confidence 6999999999999999999999998888999999976543211 111222 334455556665544433 1
Q ss_pred Ch---H-----HHHHHHHHHcCCcEEEEeeCC
Q 030298 117 DA---A-----KVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 117 ~~---~-----~~I~~~a~~~~~dliV~G~~~ 140 (179)
+. + +.+.++|.+++++.|++|.+.
T Consensus 75 ~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 75 NIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred CHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 11 1 356678999999999999874
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.27 E-value=0.13 Score=37.21 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=61.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEE--Ee-cCC-h
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKAR--IV-EGD-A 118 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~-~g~-~ 118 (179)
+|+|++++...|..++..+..+....+.++.++|+....... ..+..+. .++..+..+++..+. .. .+. .
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~-----~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 74 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPE-----SDEEAAF-VADLCAKLGIPLYILVVALAPKPGG 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCch-----HHHHHHH-HHHHHHHcCCcEEEEeeccccCCCC
Confidence 589999999999999999988877667889999996543211 0111222 333344446666543 11 111 1
Q ss_pred ----------HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 119 ----------AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 119 ----------~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
...+.++|++++++.|+.|.+..
T Consensus 75 ~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 75 NLEAAAREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 14577889999999999998754
No 23
>PRK12342 hypothetical protein; Provisional
Probab=95.48 E-value=0.29 Score=37.71 Aligned_cols=101 Identities=15% Similarity=0.084 Sum_probs=63.3
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe----cC-Ch---HH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV----EG-DA---AK 120 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~g-~~---~~ 120 (179)
..++...+|++.|+++. ..|++++++++-+.... ....+++.+.. |.+--+++. .| |+ +.
T Consensus 32 ~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~------~~~l~r~alam-----GaD~avli~d~~~~g~D~~ata~ 99 (254)
T PRK12342 32 KISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQ------NSKVRKDVLSR-----GPHSLYLVQDAQLEHALPLDTAK 99 (254)
T ss_pred cCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHh------HHHHHHHHHHc-----CCCEEEEEecCccCCCCHHHHHH
Confidence 35677899999999999 67899999998664210 01111222211 333223332 23 55 77
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.|..+.+..++|||+.|...-.... |-+.-.+..... .|.+
T Consensus 100 ~La~~i~~~~~DLVl~G~~s~D~~t----gqvg~~lA~~Lg-~P~v 140 (254)
T PRK12342 100 ALAAAIEKIGFDLLLFGEGSGDLYA----QQVGLLLGELLQ-LPVI 140 (254)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCC----CCHHHHHHHHhC-CCcE
Confidence 8888888889999999976533322 445556666666 6654
No 24
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=95.03 E-value=0.48 Score=34.05 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=57.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccC--CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-----
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRL--ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----- 115 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 115 (179)
+|+|++.+...|..++..+..+.... +-+++++|+....... .+..... .++.....+++....-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGY--RDESLEV----VERLAEELGIELEIVSFKEEYTD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCC--cHHHHHH----HHHHHHHcCCceEEEehhhhcch
Confidence 58999999999999988888877655 5688899986543221 1111122 223333444544332221
Q ss_pred --------C-C--------hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 --------G-D--------AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 --------g-~--------~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+ . ....+.+.|++++++.|+.|.+.
T Consensus 75 ~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~ 116 (185)
T cd01993 75 DIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNL 116 (185)
T ss_pred hhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCCh
Confidence 0 0 12466778999999999999875
No 25
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=94.93 E-value=0.74 Score=35.52 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=63.4
Q ss_pred CCcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe----cC-C---hHH
Q 030298 50 HGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV----EG-D---AAK 120 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~g-~---~~~ 120 (179)
.++...+|++.|+++..+.+ ++++++++-+.... ....+++.+.. |.+--+++. .| | .+.
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~------~~~~lr~aLAm-----GaD~avli~d~~~~g~D~~~tA~ 102 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT------NAKGRKDVLSR-----GPDELIVVIDDQFEQALPQQTAS 102 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh------hHHHHHHHHHc-----CCCEEEEEecCcccCcCHHHHHH
Confidence 46778999999999999875 79999998665311 11233332222 232222332 23 3 367
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.|..++++.++|||+.|........ |-+.-.+..... .|.+
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~t----gqvg~~lAe~Lg-~P~v 143 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYA----QQVGLLVGEILN-IPAI 143 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCC----CcHHHHHHHHhC-CCce
Confidence 7888888889999999976543322 445555666666 6643
No 26
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=94.22 E-value=0.67 Score=35.78 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=64.1
Q ss_pred CCcchHHHHHHHHHHhc-cCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe----cC-C---hHH
Q 030298 50 HGPNSKHAFDWALIHLC-RLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV----EG-D---AAK 120 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~-~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~g-~---~~~ 120 (179)
-++....|++.|++|.. ..+.+++++++-++. .+..+++.+ . .|.+--+++. .+ + .+.
T Consensus 35 in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~--------a~~~lr~aL----A-mGaDraili~d~~~~~~d~~~ta~ 101 (260)
T COG2086 35 INPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ--------AEEALREAL----A-MGADRAILITDRAFAGADPLATAK 101 (260)
T ss_pred cChhhHHHHHHHHHhhccCCCceEEEEEecchh--------hHHHHHHHH----h-cCCCeEEEEecccccCccHHHHHH
Confidence 45677899999999999 689999999986542 223333321 1 2333333333 23 3 477
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.|..+++..+.|||++|...-.... |-+...+..... .|.+
T Consensus 102 ~Laa~~~~~~~~LVl~G~qa~D~~t----~qvg~~lAe~Lg-~P~~ 142 (260)
T COG2086 102 ALAAAVKKIGPDLVLTGKQAIDGDT----GQVGPLLAELLG-WPQV 142 (260)
T ss_pred HHHHHHHhcCCCEEEEecccccCCc----cchHHHHHHHhC-Ccee
Confidence 8888899999999999976543322 445555555555 6654
No 27
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.93 E-value=0.82 Score=35.67 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=62.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeE---EEEecC-C
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTK---ARIVEG-D 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~g-~ 117 (179)
.+|+|++.+...|..++..+..+... -.+.++||........ +...+.... .....++... .....+ .
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~--~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 93 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYS--DQEAELVEK----LCEKLGIPLIVERVTDDLGRE 93 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCcc--chHHHHHHH----HHHHhCCceEEEEEEeecccc
Confidence 79999999999999998888777765 7899999976543311 222223332 2232233211 111111 1
Q ss_pred ------h--------HHHHHHHHHHcCCcEEEEeeCCCCCc----cccccCchh
Q 030298 118 ------A--------AKVICKEAERLKPAAVVIGSRGRGLI----QSVLQGSVG 153 (179)
Q Consensus 118 ------~--------~~~I~~~a~~~~~dliV~G~~~~~~~----~~~~~gs~~ 153 (179)
+ -..+.+.|++.++|.|+.|.+..... ..++.|+..
T Consensus 94 ~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et~lm~l~~g~~~ 147 (298)
T COG0037 94 TLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAETFLMNLLRGSGL 147 (298)
T ss_pred ccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHHHHHHHHcCcHh
Confidence 1 12466779999999999998764333 334445543
No 28
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=93.66 E-value=1.3 Score=31.46 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC-----C---hHHHHH
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-----D---AAKVIC 123 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-----~---~~~~I~ 123 (179)
+.+..++..|.+++...|.+++++.+-+... ..+. +...+...|.+--+++... + ..+.|.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~-------~~~~----l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~ 83 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEE-------AAEA----LRKALAKYGADKVYHIDDPALAEYDPEAYADALA 83 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC-------HHHH----HHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchh-------hHHH----HhhhhhhcCCcEEEEecCccccccCHHHHHHHHH
Confidence 7789999999999999999999998863121 1112 2233343455433333221 1 366888
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
+.+++.++|+|++|....+. .++-.+..... +|++
T Consensus 84 ~~~~~~~~~lVl~~~t~~g~-------~la~~lA~~L~-~~~v 118 (164)
T PF01012_consen 84 ELIKEEGPDLVLFGSTSFGR-------DLAPRLAARLG-APLV 118 (164)
T ss_dssp HHHHHHT-SEEEEESSHHHH-------HHHHHHHHHHT--EEE
T ss_pred HHHHhcCCCEEEEcCcCCCC-------cHHHHHHHHhC-CCcc
Confidence 99999999999999764322 24444555555 5543
No 29
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.64 E-value=1.6 Score=32.11 Aligned_cols=113 Identities=13% Similarity=0.063 Sum_probs=66.0
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
-++|+-.+.-....+.+.|..+..+ +.++-++...... -...++++.+ .+..++++.......++.+.+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R------~ga~eQL~~~----a~~l~vp~~~~~~~~~~~~~~ 72 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYR------IGAVEQLKTY----AEILGVPFYVARTESDPAEIA 72 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSS------THHHHHHHHH----HHHHTEEEEESSTTSCHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCC------ccHHHHHHHH----HHHhccccchhhcchhhHHHH
Confidence 3567778888888999999888877 8888888763322 1222334433 333345543221223454433
Q ss_pred ---HHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc-CCCCcEEEE
Q 030298 123 ---CKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH-CKTAPIIVV 168 (179)
Q Consensus 123 ---~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~-~~~~pVlvv 168 (179)
++..+..++|+|++.+.+++...........+ +++. .+ ..+++|
T Consensus 73 ~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~-~~~~~~~-~~~~LV 120 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK-LLEALNP-DEVHLV 120 (196)
T ss_dssp HHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH-HHHHHSS-SEEEEE
T ss_pred HHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH-HhhhcCC-ccceEE
Confidence 44556678999999999988765544444433 3333 35 656555
No 30
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.40 E-value=0.73 Score=38.46 Aligned_cols=93 Identities=13% Similarity=0.121 Sum_probs=62.9
Q ss_pred EEEEe--cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh---HHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh
Q 030298 44 ILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI---VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA 118 (179)
Q Consensus 44 Ilv~v--d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 118 (179)
||+=+ |..-....|+..|+..|...+.++..+++.++..... ......+.+..+. +.++..|+. ..+..|++
T Consensus 25 vL~WFRrDLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~L~-~~L~~~g~~--L~v~~g~~ 101 (454)
T TIGR00591 25 VVYWMSRDQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAATRRHYFFMLGGLDEVA-NECERLIIP--FHLLDGPP 101 (454)
T ss_pred EEEEecCchhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCcccccHHHHHHHHHHHHHHH-HHHHHcCCc--eEEeecCh
Confidence 44444 5556667788888877666677899999987643321 1223334444433 334444555 45678999
Q ss_pred HHHHHHHHHHcCCcEEEEeeC
Q 030298 119 AKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.|.+++++.+++.|+.-..
T Consensus 102 ~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 102 KELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 999999999999999999864
No 31
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=93.21 E-value=0.88 Score=32.31 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCc------hhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHH
Q 030298 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQ------NQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAE 127 (179)
Q Consensus 54 s~~al~~a~~la~~~~~~l~~v~v~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~ 127 (179)
...|+..| ...+.++..++|.++.. .........+.+..+.+. +...| ....+..|++.+.|.++++
T Consensus 13 DN~aL~~A----~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~-L~~~g--~~L~v~~g~~~~~l~~l~~ 85 (165)
T PF00875_consen 13 DNPALHAA----AQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQES-LRKLG--IPLLVLRGDPEEVLPELAK 85 (165)
T ss_dssp T-HHHHHH----HHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHH-HHHTT--S-EEEEESSHHHHHHHHHH
T ss_pred hhHHHHHH----HHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHH-HHhcC--cceEEEecchHHHHHHHHH
Confidence 34555555 44577899999987652 111123334445543333 34445 4456788999999999999
Q ss_pred HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 128 ~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.+++.|+.... .+....-. ..-..+.+.+.+ +.+..+..
T Consensus 86 ~~~~~~V~~~~~-~~~~~~~r-d~~v~~~l~~~~-i~~~~~~~ 125 (165)
T PF00875_consen 86 EYGATAVYFNEE-YTPYERRR-DERVRKALKKHG-IKVHTFDD 125 (165)
T ss_dssp HHTESEEEEE----SHHHHHH-HHHHHHHHHHTT-SEEEEE--
T ss_pred hcCcCeeEeccc-cCHHHHHH-HHHHHHHHHhcc-eEEEEECC
Confidence 999999998865 33333222 223344556667 88766643
No 32
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=92.85 E-value=3 Score=32.08 Aligned_cols=91 Identities=13% Similarity=0.152 Sum_probs=58.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccC--CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRL--ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---- 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (179)
.+|+|++.+...|..++..+..+.... +-++.++|+...... .. .+. .+..++..|++..+.-..
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~--~~---~~~----~~~~~~~lgI~~~v~~~~~~~~ 100 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPG--FP---EHV----LPEYLESLGVPYHIEEQDTYSI 100 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCC--CC---HHH----HHHHHHHhCCCEEEEEecchhh
Confidence 789999999999999888887776543 347888887543211 11 111 233444556665433221
Q ss_pred -------CC-h--------HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 116 -------GD-A--------AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 116 -------g~-~--------~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
+. + -..+.++|++.++|.|++|.+.-
T Consensus 101 ~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~d 142 (258)
T PRK10696 101 VKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRD 142 (258)
T ss_pred hhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchH
Confidence 11 1 13566789999999999998753
No 33
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=92.78 E-value=1.8 Score=34.29 Aligned_cols=94 Identities=11% Similarity=-0.002 Sum_probs=60.3
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe-----
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV----- 114 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----- 114 (179)
.+.++++++.+...|..++..+.......+-++.++|+.......... +.. ++..+..|+++.+...
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~----ef~----d~~a~~~gl~l~v~~~~~~i~ 97 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMI----EFR----DRRAKELGLELIVHSNPEGIA 97 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHH----HHH----HHHHHHhCCCEEEEeChHHHh
Confidence 357899999999999999888876654445578899987654322222 122 2223333555544321
Q ss_pred cC------C--------hHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 115 EG------D--------AAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 115 ~g------~--------~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
.| + -...+.++++++++|.++.|.+..
T Consensus 98 ~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrD 138 (301)
T PRK05253 98 RGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRD 138 (301)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccc
Confidence 11 0 124677888999999999998764
No 34
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=90.57 E-value=5.5 Score=31.42 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-----
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----- 115 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 115 (179)
+.++++++.+.+.|..++..+.......+-++.++|+..........+ ..+ +..+..|++..+....
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~e----frd----~~a~~~gl~l~v~~~~~~~~~ 90 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIA----FRD----HMVAKYGLRLIVHSNEEGIAD 90 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHH----HHH----HHHHHhCCCEEEEechhhhhc
Confidence 456788899999999999888777654456799999976543322222 222 2222334444432211
Q ss_pred C------C--------hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 G------D--------AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 g------~--------~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
| + -...+.++++++++|.++.|.+.
T Consensus 91 g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RR 129 (294)
T TIGR02039 91 GINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARR 129 (294)
T ss_pred CccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCCh
Confidence 1 0 12457778888999999999875
No 35
>PRK10867 signal recognition particle protein; Provisional
Probab=89.87 E-value=5.7 Score=33.11 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=56.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH---
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA--- 119 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~--- 119 (179)
-++++..++-.+..+...|..+++..|.++.++.+.... ....+.+.. ..+..++++.......++.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R------~aa~eQL~~----~a~~~gv~v~~~~~~~dp~~i~ 172 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR------PAAIEQLKT----LGEQIGVPVFPSGDGQDPVDIA 172 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc------hHHHHHHHH----HHhhcCCeEEecCCCCCHHHHH
Confidence 345556677778888999988877657778777663321 111122222 2233455543221223443
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVL 148 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~ 148 (179)
...++.++..++|+|++.+.++......+
T Consensus 173 ~~a~~~a~~~~~DvVIIDTaGrl~~d~~l 201 (433)
T PRK10867 173 KAALEEAKENGYDVVIVDTAGRLHIDEEL 201 (433)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCHHH
Confidence 34446677788999999999886654433
No 36
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=89.60 E-value=4 Score=26.40 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~ 123 (179)
|+|++.+...|..++..+..+. .++.++|+...... ..+...+..+ + ...+.+.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~----~----------------~r~~~~~ 54 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHGISP--RLEDAKEIAK----E----------------AREEAAK 54 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCCCcc--cHHHHHHHHH----H----------------HHHHHHH
Confidence 5789999988888877776652 37888988665432 1111111111 1 4456777
Q ss_pred HHHHHcCCcEEEEeeCC
Q 030298 124 KEAERLKPAAVVIGSRG 140 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~ 140 (179)
+.|++.+++.|+.|.+.
T Consensus 55 ~~a~~~g~~~i~~g~~~ 71 (103)
T cd01986 55 RIAKEKGAETIATGTRR 71 (103)
T ss_pred HHHHHcCCCEEEEcCCc
Confidence 78888899999999764
No 37
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=88.96 E-value=4.2 Score=29.86 Aligned_cols=34 Identities=6% Similarity=-0.086 Sum_probs=26.1
Q ss_pred CeEEEEecCCcchHHHH-HHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAF-DWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al-~~a~~la~~~~~~l~~v~ 76 (179)
++|++++.++..+..++ +....| ...|..++++.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEE
Confidence 57999999999999986 666555 44588877665
No 38
>PRK13820 argininosuccinate synthase; Provisional
Probab=88.05 E-value=13 Score=30.65 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=54.4
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCC-EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe-----
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLAD-TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV----- 114 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~-~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----- 114 (179)
+++|+|++.+...|..++.++.. .++. +++++|+....... . ++. .++.+...|++..+.-.
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~g~~~~-e-------~~~-a~~~a~~lGi~~~vvd~~eef~ 69 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDVGQPEE-E-------IKE-AEEKAKKLGDKHYTIDAKEEFA 69 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEECCCChH-H-------HHH-HHHHHHHcCCCEEEEeCHHHHH
Confidence 48999999999988888887643 3464 89999987542111 0 111 12222223333221110
Q ss_pred ----------------------cC--ChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 115 ----------------------EG--DAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 115 ----------------------~g--~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
.. -....+.++|++.+++.|.-|..++
T Consensus 70 ~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 70 KDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 01 1245788889999999999999654
No 39
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.90 E-value=12 Score=31.20 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=72.0
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh---
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--- 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--- 118 (179)
.=.||++.++-....+-..|..+-+ .+.++-++.+....+ .+-+.++. ..++-++++......-+|
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~Rp------AA~eQL~~----La~q~~v~~f~~~~~~~Pv~I 170 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRP------AAIEQLKQ----LAEQVGVPFFGSGTEKDPVEI 170 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCCh------HHHHHHHH----HHHHcCCceecCCCCCCHHHH
Confidence 3456788899888888888877777 688888777643221 22223333 333334554433112245
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+..=++.+++..+|+||+.+-+|.....-++.... .|-......-+|+|=
T Consensus 171 ak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~-~Ik~~~~P~E~llVv 220 (451)
T COG0541 171 AKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELK-EIKEVINPDETLLVV 220 (451)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHH-HHHhhcCCCeEEEEE
Confidence 45667889999999999999998887776664432 233333225555553
No 40
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=87.47 E-value=7.6 Score=26.98 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=27.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
+|+|++.+...|..++..+....... .++.++|+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 47899999999988888776655432 47888888654
No 41
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=87.40 E-value=8.1 Score=30.77 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=59.2
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEE------
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARI------ 113 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------ 113 (179)
.++++++++.+.+.|..++..+.+.+...+..+.++|+..........+...+ ..+..|+++.+..
T Consensus 36 ~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~--------~a~~~gl~Liv~~~~~~~~ 107 (312)
T PRK12563 36 ECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDR--------RAKELGLDLVVHHNPDGIA 107 (312)
T ss_pred hcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHH--------HHHHhCCcEEEecChHHHH
Confidence 45788999999999999999888776554567899998665444333322221 1222233333211
Q ss_pred ------ecC-----C--hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 114 ------VEG-----D--AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 114 ------~~g-----~--~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
..| + -.+.+.++.+++++|.++.|.+.
T Consensus 108 ~G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RR 147 (312)
T PRK12563 108 RGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARR 147 (312)
T ss_pred hCCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCH
Confidence 001 1 23567777888899999999875
No 42
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=87.14 E-value=8 Score=29.59 Aligned_cols=88 Identities=19% Similarity=0.097 Sum_probs=53.1
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-----
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----- 115 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 115 (179)
+++++|++.+...|..++..+.+. |.++..+|+........ ..+. .++..+..|++..+.-..
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~~~----e~~~----a~~~a~~lgi~~~ii~~~~~~~~ 79 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSISPR----ELED----AIIIAKEIGVNHEFVKIDKMINP 79 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCCHH----HHHH----HHHHHHHcCCCEEEEEcHHHHHH
Confidence 478999999999888888777554 56788888864321111 1111 122233334443322110
Q ss_pred -------------CChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 -------------GDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 -------------g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
......+.++|++.+++.|+-|.+.
T Consensus 80 ~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~ 117 (252)
T TIGR00268 80 FRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNA 117 (252)
T ss_pred HHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 1123356678999999999999764
No 43
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=86.90 E-value=2.7 Score=30.66 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=27.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
++|++++.++..+..+.++...|.+ .+.+++++-
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 7999999999999888888877754 477776654
No 44
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=86.50 E-value=9.1 Score=31.59 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=62.8
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHH-HHHHHhhhcCceeEEEEec---
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEK-LAIEAMDVAMVRTKARIVE--- 115 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~--- 115 (179)
..++|++++.++..+..+.++...|- +.|.+++++-- .. ..+.+.. .++.... -++......
T Consensus 5 ~~k~IllgvTGsiaa~k~~~lv~~L~-~~g~~V~vv~T--~~--------A~~fi~~~~l~~l~~---~~V~~~~~~~~~ 70 (399)
T PRK05579 5 AGKRIVLGVSGGIAAYKALELVRRLR-KAGADVRVVMT--EA--------AKKFVTPLTFQALSG---NPVSTDLWDPAA 70 (399)
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHH-hCCCEEEEEEC--Hh--------HHHHHhHHHHHHhhC---CceEcccccccc
Confidence 44899999999998888888886664 45777776642 11 1111111 1222211 122111111
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccc---cCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVL---QGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~---~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+..... ++.++. +|++|+..-..+.+.++- ..+....++.... +|++++|.-
T Consensus 71 ~~~~~h-i~l~~~--aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~-~pvvi~Pam 125 (399)
T PRK05579 71 EAAMGH-IELAKW--ADLVLIAPATADLIAKLAHGIADDLLTTTLLATT-APVLVAPAM 125 (399)
T ss_pred CCCcch-hhcccc--cCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcC-CCEEEEeCC
Confidence 111112 344555 999999876555444432 2344444555668 999999953
No 45
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.44 E-value=15 Score=30.64 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=56.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH--
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA-- 119 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~-- 119 (179)
--++++..++-.+..+...|..+....|.++.++.+..... ...+.+.. ..+..++++.......+|.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~------~a~~QL~~----~a~~~gvp~~~~~~~~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP------AAIEQLKV----LGQQVGVPVFALGKGQSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch------HHHHHHHH----HHHhcCCceEecCCCCCHHHH
Confidence 34555666777788888888887655577887776643211 11122222 2233445543322222443
Q ss_pred -HHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 030298 120 -KVICKEAERLKPAAVVIGSRGRGLIQSV 147 (179)
Q Consensus 120 -~~I~~~a~~~~~dliV~G~~~~~~~~~~ 147 (179)
...++.++..++|+|++.+.++......
T Consensus 171 ~~~al~~~~~~~~DvVIIDTaGr~~~d~~ 199 (428)
T TIGR00959 171 ARRALEYAKENGFDVVIVDTAGRLQIDEE 199 (428)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccccCHH
Confidence 3445566778899999999987664443
No 46
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.95 E-value=15 Score=29.54 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=61.4
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (179)
++--.+|+++++-.....-..|..+- ..|-++.+... + .+...+-++++.|. +..|+++-..-..+||+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~-D-----TFRAaAiEQL~~w~----er~gv~vI~~~~G~DpA 207 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAG-D-----TFRAAAIEQLEVWG----ERLGVPVISGKEGADPA 207 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEec-c-----hHHHHHHHHHHHHH----HHhCCeEEccCCCCCcH
Confidence 44557789999988888777774444 45667766654 2 22333334444433 33466665433334776
Q ss_pred HHHH---HHHHHcCCcEEEEeeCCCCCccccccC
Q 030298 120 KVIC---KEAERLKPAAVVIGSRGRGLIQSVLQG 150 (179)
Q Consensus 120 ~~I~---~~a~~~~~dliV~G~~~~~~~~~~~~g 150 (179)
..+. ++|+..++|+|++.+-||---..-++.
T Consensus 208 aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~ 241 (340)
T COG0552 208 AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMD 241 (340)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHH
Confidence 6554 558899999999999887544444443
No 47
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=85.79 E-value=4.9 Score=33.89 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=65.6
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHH-HHHHhhhcCceeEEEEecCC
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKL-AIEAMDVAMVRTKARIVEGD 117 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~g~ 117 (179)
...++|++++.++-.+..+.+++..|.+ .|..++++-- ... .+.+... ++.. . +.++........
T Consensus 68 l~~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~VvmT--~sA--------~~fv~p~~~~~l-s--~~~V~~d~~~~~ 133 (475)
T PRK13982 68 LASKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVLT--KAA--------QQFVTPLTASAL-S--GQRVYTDLFDPE 133 (475)
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEEC--cCH--------HHHhhHHHHHHh-c--CCceEecCCCcc
Confidence 3458999999999999999998877754 5777776642 211 1111111 1121 1 122222211111
Q ss_pred ---hHHHHHHHHHHcCCcEEEEeeCCCCCcccccc---CchhHHHHhcCCCCcEEEEcCCCC
Q 030298 118 ---AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQ---GSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 118 ---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~---gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.... +++++. +|++|+..-..+.+.++-. .+....++.... +|++++|...+
T Consensus 134 ~~~~~~H-i~la~~--aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~-~PvliaPaMN~ 191 (475)
T PRK13982 134 SEFDAGH-IRLARD--CDLIVVAPATADLMAKMANGLADDLASAILLAAN-RPILLAPAMNP 191 (475)
T ss_pred cccCccc-hhhhhh--cCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcC-CCEEEEEcCCH
Confidence 1111 345666 9999998765555444332 233344555678 99999997543
No 48
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=85.48 E-value=7.4 Score=29.52 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=38.5
Q ss_pred EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 71 TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 71 ~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.++.|.+......+.....+.++++. +..+..+.++... ..|.....-+..+.+.|+|.+|+|+.
T Consensus 143 ~VLiMtV~PGfgGQ~f~~~~l~KI~~lr-~~~~~~~~~~~Ie-VDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 143 LIQILTLDPRTGTKAPSDLILDRVIQVE-NRLGNRRVEKLIS-IDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred EEEEEEECCCCCCccccHHHHHHHHHHH-HHHHhcCCCceEE-EECCCCHHHHHHHHHCCCCEEEEChh
Confidence 5666666554444444344444555433 3334445555443 35655555566777789999999964
No 49
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=85.40 E-value=11 Score=26.99 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=45.8
Q ss_pred CCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----C-Ch---HHH
Q 030298 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----G-DA---AKV 121 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----g-~~---~~~ 121 (179)
..+.+..++..|.+++. .+..+.++.+-+.. . ...++ .. ...|.+--+++.. + ++ .+.
T Consensus 17 l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~~-----~---~~~~~----~~-~~~Gad~v~~~~~~~~~~~~~~~~a~~ 82 (181)
T cd01985 17 LNPLDLEAVEAALRLKE-YGGEVTALVIGPPA-----A---EVALR----EA-LAMGADKVLLVEDPALAGYDPEATAKA 82 (181)
T ss_pred cCHhhHHHHHHHHHHhh-cCCeEEEEEECChH-----H---HHHHH----HH-HHhCCCEEEEEecCcccCCChHHHHHH
Confidence 45667788998988876 56677777653321 0 01111 11 1223432222221 1 22 577
Q ss_pred HHHHHHHcCCcEEEEeeCCC
Q 030298 122 ICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~ 141 (179)
|.+++++.++|+|++|....
T Consensus 83 l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 83 LAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHhCCCEEEECCccc
Confidence 88888888999999998764
No 50
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=85.21 E-value=11 Score=26.65 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--HH
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--AK 120 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~ 120 (179)
++++.+.+...|..++..+.. .+.++..+++....... . ..+.++...+. .+.. .. +...+. ..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~~~~~---~-~~~~~~~~~~~----~g~~-~~-~~~~~~~~~~ 66 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYGQRHA---K-EEEAAKLIAEK----LGPS-TY-VPARNLIFLS 66 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECCCCCh---h-HHHHHHHHHHH----HCCC-EE-EeCcCHHHHH
Confidence 578999999888887776654 24568888886532211 1 11223322222 2211 11 112222 34
Q ss_pred HHHHHHHHcCCcEEEEeeCCCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~ 142 (179)
.+.++|++.+++.|+.|.+...
T Consensus 67 ~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 67 IAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHHCCCCEEEEeeccCc
Confidence 5677889999999999988643
No 51
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=84.57 E-value=7.1 Score=28.88 Aligned_cols=35 Identities=6% Similarity=-0.051 Sum_probs=26.9
Q ss_pred CCeEEEEecCCcchHH-HHHHHHHHhccCCCEEEEEE
Q 030298 41 GRDILIAVDHGPNSKH-AFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~-al~~a~~la~~~~~~l~~v~ 76 (179)
-++|++++.++-.+-. +++.+..+.+ .|..++++-
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~ 40 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIV 40 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEE
Confidence 4899999999998888 5777766644 477777664
No 52
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=84.48 E-value=9.4 Score=31.59 Aligned_cols=84 Identities=13% Similarity=0.043 Sum_probs=53.4
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------------hHHHHHHHHHHHHHHHHhhhcCceeEEEEecC
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------------IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG 116 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g 116 (179)
|..-....|+..|+.. +.++..|+|.++.... .......+.+.++.+. +...|+.. .+..|
T Consensus 10 DLRl~DN~aL~~A~~~----~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~-L~~~g~~L--~v~~G 82 (429)
T TIGR02765 10 DLRVHDNPALYKASSS----SDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTS-LRKLGSDL--LVRSG 82 (429)
T ss_pred CCccccHHHHHHHHhc----CCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHH-HHHcCCCe--EEEeC
Confidence 3344455667666543 3478888988753222 1112333445553333 34445554 56789
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
++.+.|.+++++.+++.|+.-..
T Consensus 83 ~~~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 83 KPEDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred CHHHHHHHHHHHhCCCEEEEecc
Confidence 99999999999999999999865
No 53
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=84.40 E-value=6.9 Score=28.38 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=25.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
++|++++.++..+..+.+....|. +.+.+++++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~-~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLT-KLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 579999999998888887665554 4577776654
No 54
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=84.40 E-value=16 Score=27.76 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=38.7
Q ss_pred CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 70 DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 70 ~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
+.+.++.|.+......+.....+.++++. +.....+.++...+ .|.....-+..+.+.++|.+|+|++
T Consensus 132 D~VLvMsV~PGf~GQ~fi~~~l~KI~~lr-~~~~~~~~~~~IeV-DGGI~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 132 DKITVMTVDPGFAGQPFIPEMLDKIAELK-ALRERNGLEYLIEV-DGSCNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred CEEEEEEEcCCCcchhccHHHHHHHHHHH-HHHHhcCCCeEEEE-ECCCCHHHHHHHHHcCCCEEEEChH
Confidence 35666666554444444444444555433 33344455555443 5655455555666789999999964
No 55
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=84.33 E-value=8.9 Score=28.88 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=54.0
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCC-------------------CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHh
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-------------------DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAM 102 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~-------------------~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~ 102 (179)
.-|.+.+..++.-++.+++........| +-+.++.|.+....+.+....-+.++++.+..
T Consensus 86 d~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~- 164 (220)
T COG0036 86 DIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI- 164 (220)
T ss_pred CEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHh-
Confidence 5677777766666776666655432211 12444455444333333344445555543333
Q ss_pred hhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
...+ ++... ..|.....-+..+...++|.+|+|+.
T Consensus 165 ~~~~-~~~Ie-VDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 165 DERL-DILIE-VDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred cccC-CeEEE-EeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 3233 44433 35666666777788889999999984
No 56
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=84.07 E-value=9 Score=28.93 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=36.3
Q ss_pred EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 71 TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 71 ~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.++.|.+......+.+...+.++++. +.....+.++.+.+ .|.....-+..+.+.++|.+|+|+.
T Consensus 135 ~VlvMtV~PGf~GQ~fi~~~l~KI~~l~-~~~~~~~~~~~IeV-DGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 135 LVLVMSVNPGFGGQAFIPSALDKLRAIR-KKIDALGKPIRLEI-DGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred EEEEEEECCCCCCccccHHHHHHHHHHH-HHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEChh
Confidence 4555565544333333333344444432 32333344544433 4655555566677789999999965
No 57
>PRK14057 epimerase; Provisional
Probab=84.00 E-value=9.4 Score=29.45 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=38.5
Q ss_pred EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 71 TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 71 ~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.++.|.+......+.....+.++++. +.....+.++... ..|.....-+..+.+.++|.+|+|+.
T Consensus 157 ~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr-~~~~~~~~~~~Ie-VDGGI~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 157 VIQLLAVNPGYGSKMRSSDLHERVAQLL-CLLGDKREGKIIV-IDGSLTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred EEEEEEECCCCCchhccHHHHHHHHHHH-HHHHhcCCCceEE-EECCCCHHHHHHHHHCCCCEEEEChH
Confidence 4556666554444444344444455432 3334445555443 45666555666777789999999965
No 58
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=83.34 E-value=4.1 Score=27.17 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=34.6
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..+..+.|.+.++..||+-+.. |.++..+.+.-|.||++++-+.
T Consensus 5 a~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 5 ARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcCc
Confidence 5567788999999999988774 7888989888777999998664
No 59
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=83.20 E-value=13 Score=27.72 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhhcCceeEEEEecCC------------hHHHHHHHHHHcCC-cEEEEeeCCCCC-ccccccCchhHHHH
Q 030298 92 GLMEKLAIEAMDVAMVRTKARIVEGD------------AAKVICKEAERLKP-AAVVIGSRGRGL-IQSVLQGSVGEYCL 157 (179)
Q Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~g~------------~~~~I~~~a~~~~~-dliV~G~~~~~~-~~~~~~gs~~~~ll 157 (179)
..++.+.++.....+.++++.....+ ..+.|++..+..+. |.|++...--.. ...++-+-+.+.+.
T Consensus 110 ~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~ 189 (204)
T PF04459_consen 110 PFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELE 189 (204)
T ss_pred HHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHH
Confidence 34444444443334556655443322 36677666654333 899998765444 34455578899999
Q ss_pred hcCCCCcEEEEcCCC
Q 030298 158 HHCKTAPIIVVPGKE 172 (179)
Q Consensus 158 ~~~~~~pVlvv~~~~ 172 (179)
+..+ +||.+|+..+
T Consensus 190 ~~lg-~~v~vv~~~~ 203 (204)
T PF04459_consen 190 ERLG-VPVIVVRGPG 203 (204)
T ss_pred HHhC-CcEEEeCCCC
Confidence 9999 9999998754
No 60
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=83.17 E-value=10 Score=31.94 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=61.5
Q ss_pred CCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh------HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHH
Q 030298 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI------VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~ 123 (179)
..-....|+..|+. .+.+|..+++.++..... ......+.+..+. +.+...|+.. .+..|++.+.|.
T Consensus 11 LRl~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~-~~L~~~G~~L--~v~~G~p~~vl~ 83 (471)
T TIGR03556 11 LRLSDNIGLAAARQ----QSAKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQ-QRYQQAGSQL--LILQGDPVQLIP 83 (471)
T ss_pred CCcchHHHHHHHHh----cCCCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHH-HHHHHCCCCe--EEEECCHHHHHH
Confidence 33445566666653 355799999887532211 1222334444433 3344445554 567899999999
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcE
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPI 165 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pV 165 (179)
+++++.+++.|+.-... +...... -....+.+.... +.+
T Consensus 84 ~l~~~~~~~~V~~~~~~-~~~~~~r-d~~v~~~l~~~~-i~~ 122 (471)
T TIGR03556 84 QLAQQLGAKAVYWNLDV-EPYGRKR-DRAVAAALKEAG-IAV 122 (471)
T ss_pred HHHHHcCCCEEEEeccc-CHHHHHH-HHHHHHHHHHCC-CEE
Confidence 99999999999987553 3332222 223344444455 655
No 61
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=83.06 E-value=1.2 Score=29.19 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=29.3
Q ss_pred cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.-+-.+.|+++|+++++|++|+|... .+...+++.+ +... +||+
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~------pL~~Gl~D~l-~~~g-i~vf 90 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEA------PLVAGLADAL-RAAG-IPVF 90 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHH------HHHTTHHHHH-HHTT--CEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChH------HHHHHHHHHH-HHCC-CcEE
Confidence 33567899999999999999999653 2334555644 4466 6654
No 62
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=82.89 E-value=28 Score=29.49 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=62.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV 121 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (179)
..+++.++.+. +++..+-.|+..+.++.++-|...+.... +..++. +-+.|+++.+....+ ...
T Consensus 360 gdviltyg~s~----vV~~ill~A~~~~k~frVvVVDSRP~~EG-----~~~lr~-----Lv~~GinctYv~I~a--~sy 423 (556)
T KOG1467|consen 360 GDVLLTYGSSS----VVNMILLEAKELGKKFRVVVVDSRPNLEG-----RKLLRR-----LVDRGINCTYVLINA--ASY 423 (556)
T ss_pred CCEEEEecchH----HHHHHHHHHHHhCcceEEEEEeCCCCcch-----HHHHHH-----HHHcCCCeEEEEehh--HHH
Confidence 56777777774 55555556666677788877765543322 223332 334588888766543 223
Q ss_pred HHHHHHHcCCcEEEEeeCCC---CCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
|. . .++-|++|.+.- +.+... .|...-.++.+..++|||||=.
T Consensus 424 im---~--evtkvfLGahailsNG~vysR-~GTa~valvAna~nVPVlVCCE 469 (556)
T KOG1467|consen 424 IM---L--EVTKVFLGAHAILSNGAVYSR-VGTACVALVANAFNVPVLVCCE 469 (556)
T ss_pred HH---H--hcceeeechhhhhcCcchhhh-cchHHHHHHhcccCCCEEEEec
Confidence 33 2 388999999862 222222 2444444555554599999854
No 63
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.64 E-value=24 Score=29.44 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=55.1
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--- 120 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--- 120 (179)
.+++..++-.+..+...|..+.+ .|.++.++.+.... ....++++.+ .+..++++.......++..
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R------~aA~eQLk~~----a~~~~vp~~~~~~~~dp~~i~~ 172 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFR------AGAFDQLKQN----ATKARIPFYGSYTESDPVKIAS 172 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccc------hhHHHHHHHH----hhccCCeEEeecCCCCHHHHHH
Confidence 45566777777788888876654 46677777553221 1111222222 2333455543222345533
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCch
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSV 152 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~ 152 (179)
.-++.++..++|+|++.+.|+......++...
T Consensus 173 ~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El 204 (429)
T TIGR01425 173 EGVEKFKKENFDIIIVDTSGRHKQEDSLFEEM 204 (429)
T ss_pred HHHHHHHhCCCCEEEEECCCCCcchHHHHHHH
Confidence 33455666789999999999876655444443
No 64
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=82.45 E-value=12 Score=28.08 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=45.1
Q ss_pred HHHHhhhcCceeEEEEecC--Ch---HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 98 AIEAMDVAMVRTKARIVEG--DA---AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g--~~---~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.+.....++.+.+.-... +| ..+.-+..++.++|+||+++.....-. -+.++.++..+. +|.+|+..
T Consensus 23 lDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG----P~kARE~l~~s~-~PaiiigD 95 (277)
T COG1927 23 LDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG----PKKAREILSDSD-VPAIIIGD 95 (277)
T ss_pred HHhhcccCCceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC----chHHHHHHhhcC-CCEEEecC
Confidence 3444455566665433221 33 345667789999999999976543322 246889999999 99999854
No 65
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=82.19 E-value=11 Score=33.86 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=58.9
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh------H-HHHHHHHHHHHHH-HHhhhcCcee--
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI------V-YDMSQGLMEKLAI-EAMDVAMVRT-- 109 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~------~-~~~~~~~l~~~~~-~~~~~~~~~~-- 109 (179)
...+|.+-.=+.+....|+.++.+++...+..+++++..+...... . ....+........ .......+..
T Consensus 613 ~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 692 (769)
T KOG1650|consen 613 SSYKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAE 692 (769)
T ss_pred ceeEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhh
Confidence 3357777778888888999999999998889999999877543111 1 1111111111101 1111111111
Q ss_pred EEEEecCChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 110 KARIVEGDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 110 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
+..+..|....++++...+ ++|++++|....
T Consensus 693 ek~v~~~~et~~~~~~~~~-~ydL~ivGr~~~ 723 (769)
T KOG1650|consen 693 EKIVLNGAETTALLRSITE-DYDLFIVGRSHG 723 (769)
T ss_pred HHHHhcchhHHHHHHHhcc-ccceEEEecccc
Confidence 2334456444455555444 799999998754
No 66
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.89 E-value=31 Score=29.35 Aligned_cols=114 Identities=15% Similarity=0.017 Sum_probs=71.0
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEE-EEecC-
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKA-RIVEG- 116 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~g- 116 (179)
.+|-=.+|++++-..|..+...|.+|.+. +-++.+..|.. . ..-+-+.++...+.+..-.+-.++. .--+|
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqN-kfrVLIAACDT-F-----RsGAvEQLrtHv~rl~~l~~~~v~lfekGYgk 449 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQN-KFRVLIAACDT-F-----RSGAVEQLRTHVERLSALHGTMVELFEKGYGK 449 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhC-CceEEEEeccc-h-----hhhHHHHHHHHHHHHHHhccchhHHHhhhcCC
Confidence 56777888999999999988888777664 66666666532 1 1112223333333332222211110 00112
Q ss_pred C---hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC
Q 030298 117 D---AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC 160 (179)
Q Consensus 117 ~---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~ 160 (179)
| ++..-+++|+.+++|.|.|.+-+|---...++++.+. ++...
T Consensus 450 d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k-~~~~~ 495 (587)
T KOG0781|consen 450 DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAK-LIKVN 495 (587)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHH-HHhcC
Confidence 3 4778889999999999999998887777777788765 44433
No 67
>PRK00919 GMP synthase subunit B; Validated
Probab=81.19 E-value=11 Score=29.89 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=29.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
++++|++.+.-.|..++..+.+ ..|.+++++|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~---~lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHR---AIGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHH---HhCCeEEEEEEECCC
Confidence 7899999999888887766654 246789999997654
No 68
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=80.74 E-value=22 Score=27.43 Aligned_cols=122 Identities=9% Similarity=-0.002 Sum_probs=60.9
Q ss_pred EEEecCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--H
Q 030298 45 LIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--A 119 (179)
Q Consensus 45 lv~vd~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~ 119 (179)
+.|+|.+ .-...+++.-+++....|.+ .+.+.....+ ....++..+.++...+.. . ..+.+-..+...+. .
T Consensus 6 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~--gi~~~GstGE~~~ls~~Er~~l~~~~~~~~-~-~~~~vi~gv~~~~~~~~ 81 (281)
T cd00408 6 VTPFTADGEVDLDALRRLVEFLIEAGVD--GLVVLGTTGEAPTLTDEERKEVIEAVVEAV-A-GRVPVIAGVGANSTREA 81 (281)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEECCCCcccccCCHHHHHHHHHHHHHHh-C-CCCeEEEecCCccHHHH
Confidence 3444432 33445555555555444443 3333333222 222333444444433332 2 22443333322233 4
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..+.+.+++.++|-+++..........--+-..-..|+...+ .|+++...+
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~-~pi~iYn~P 132 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD-LPVILYNIP 132 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECc
Confidence 455677899999999998765433222111233455777778 999988554
No 69
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=80.65 E-value=20 Score=26.20 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=46.7
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--------
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-------- 115 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 115 (179)
|+|++.+...|..++..+.... +.++.++|+...... ....+. .+...+..|++..+.-..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~~----~~~~~~----~~~~a~~lgi~~~~~~~~~~~~~~~~ 69 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLFP----RRELEE----AKRLAKEIGIRHEVIETDELDDPEFA 69 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCCC----HHHHHH----HHHHHHHcCCcEEEEeCCccccHHHh
Confidence 5677888877777776664442 226777777544221 111111 222233334433322111
Q ss_pred ---------C--ChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 ---------G--DAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 ---------g--~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
. -....+.++|++.+++.|+.|.+.
T Consensus 70 ~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 70 KNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNA 105 (202)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 0 123456678999999999999764
No 70
>PLN00200 argininosuccinate synthase; Provisional
Probab=78.47 E-value=37 Score=28.14 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
|.++|+|++.+.-.|..++.++.+ .+|.+++.+++....
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~Gq 42 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVGQ 42 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECCC
Confidence 357999999999988888877754 246789999986653
No 71
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=78.03 E-value=18 Score=25.75 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=40.0
Q ss_pred HhhhcCceeEEEEecC-ChH---HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 101 AMDVAMVRTKARIVEG-DAA---KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~g-~~~---~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.++..|++++..+..- ... ..+.+.+++.+++.+|.++.....+. --+..++. .||+-||...
T Consensus 20 ~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp--------gvva~~t~-~PVIgvP~~~ 86 (156)
T TIGR01162 20 ILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP--------GMVAALTP-LPVIGVPVPS 86 (156)
T ss_pred HHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH--------HHHHhccC-CCEEEecCCc
Confidence 3455678888777663 233 34444455677888888877543333 33556677 9999888654
No 72
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=77.66 E-value=37 Score=27.65 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=52.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe-------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV------- 114 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------- 114 (179)
++|+|++.+.-.|..++..+.+ .+..++.+|+........ . +.++. .+..++..|++..+.-.
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~~~--~---~d~~~-a~~va~~LgIp~~vvd~~~~f~~~ 75 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFNGS--T---EYLED-ARALAERLGIGHITYDARKVFRKQ 75 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCCCC--h---HHHHH-HHHHHHHhCCCEEEEecHHHHHHH
Confidence 7899999999888876665543 466888888754221110 0 11111 22333444454332211
Q ss_pred ----------cC---Ch---------HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 115 ----------EG---DA---------AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 115 ----------~g---~~---------~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
.| ++ ...+.++|++.++|.|+.|.+.+
T Consensus 76 v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 76 IIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 02 11 23567889999999999997763
No 73
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=76.30 E-value=20 Score=25.45 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=37.6
Q ss_pred hhhcCceeEEEEecC-ChHH---HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEG-DAAK---VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~---~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..|++++..+... ..-+ +..+.+++.++..||-|+.+-..+.++ +...++ .||+=||-.
T Consensus 25 L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGm--------vAa~T~-lPViGVPv~ 89 (162)
T COG0041 25 LEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGM--------VAAKTP-LPVIGVPVQ 89 (162)
T ss_pred HHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchh--------hhhcCC-CCeEeccCc
Confidence 445578777777663 2333 444445677788888887764444332 334567 888888754
No 74
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=75.70 E-value=30 Score=25.57 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=49.9
Q ss_pred EEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC--------C
Q 030298 46 IAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--------D 117 (179)
Q Consensus 46 v~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--------~ 117 (179)
++.-..+.+..++..+..++...++++.++.+-+.. ..... +... ..|.+--+++... .
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~~--------~~~~~----~~l~-~~G~d~V~~~~~~~~~~~~~e~ 95 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPPQ--------AEEAL----REAL-AMGADRAILVSDRAFAGADTLA 95 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEECCHH--------HHHHH----HHHH-HcCCCEEEEEecccccCCChHH
Confidence 445556777788888989888777787777664310 01111 1211 2244322222111 1
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGL 143 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~ 143 (179)
..+.|.+++++.++|+|++|....+.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~ 121 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDG 121 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccC
Confidence 25578888888889999999876544
No 75
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=74.40 E-value=8.2 Score=26.77 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC-CCc---cccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR-GLI---QSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~-~~~---~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..+.|.+++++++++.||+|-... ++. ........+++|-...+ +||..+-..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~-~~v~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFG-LPVVLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhC-CCEEEEcCC
Confidence 478889999999999999995432 111 11222355677766677 999888543
No 76
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=74.40 E-value=33 Score=25.45 Aligned_cols=82 Identities=13% Similarity=0.004 Sum_probs=52.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCC-----
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD----- 117 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~----- 117 (179)
+|.|=+.++-+...++--|+. ....++++.++.....+.. . +++ .+..|++..+.-..+-
T Consensus 2 ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A~---------~----ler-A~~~gIpt~~~~~k~~~~r~~ 66 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADAY---------A----LER-AAKAGIPTVVLDRKEFPSREA 66 (200)
T ss_pred eEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCCH---------H----HHH-HHHcCCCEEEeccccCCCHHH
Confidence 677778888777777777766 4445777777766443211 1 122 2344666543333321
Q ss_pred hHHHHHHHHHHcCCcEEEEeeC
Q 030298 118 AAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~ 139 (179)
-..+|.+..+..++|+||+.-.
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcch
Confidence 4678999999999999999864
No 77
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=74.07 E-value=44 Score=26.82 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=33.1
Q ss_pred hhhcCceeEEEEecCC----hHHHHHHHHHHcCCcEEE-EeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEGD----AAKVICKEAERLKPAAVV-IGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~----~~~~I~~~a~~~~~dliV-~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..++.+.+.+..|+ ....+.+.+++.++|.|| +| +.+. -.++..+..... .|++.||=.
T Consensus 45 l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG--GGs~------~D~aK~ia~~~~-~p~i~VPTt 110 (349)
T cd08550 45 LAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVG--GGKT------LDTAKAVADRLD-KPIVIVPTI 110 (349)
T ss_pred HHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec--CcHH------HHHHHHHHHHcC-CCEEEeCCc
Confidence 3444555544444444 245566777778888765 44 2111 233444444456 788888743
No 78
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=73.92 E-value=27 Score=25.27 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=24.6
Q ss_pred eEEEEecCCcch-HHHHHHHHHHhccCCCEEEEEE
Q 030298 43 DILIAVDHGPNS-KHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 43 ~Ilv~vd~s~~s-~~al~~a~~la~~~~~~l~~v~ 76 (179)
+|++++-++... ...++....+.++.|.+++++-
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~ 35 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRYGDEIDVFL 35 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 588999998443 4477888888877777777653
No 79
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=73.60 E-value=46 Score=27.44 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=61.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHH-HHHHhhhcCceeEEEEecCChHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKL-AIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
++|++++.++..+..+++.+..|.+ .+.+++++-- .. ..+.+... ++.... .++...........
T Consensus 4 k~IllgiTGSiaa~~~~~ll~~L~~-~g~~V~vv~T--~~--------A~~fv~~~~l~~~~~---~~v~~~~~~~~~~~ 69 (390)
T TIGR00521 4 KKILLGVTGGIAAYKTVELVRELVR-QGAEVKVIMT--EA--------AKKFITPLTLEALSG---HKVVTELWGPIEHN 69 (390)
T ss_pred CEEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEEC--Hh--------HHHHHHHHHHHHhhC---Cceeehhccccccc
Confidence 7999999999999888888877644 4777776542 11 11222211 122111 11211111111111
Q ss_pred HH-HHHHHHcCCcEEEEeeCCCCCccccc---cCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VI-CKEAERLKPAAVVIGSRGRGLIQSVL---QGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I-~~~a~~~~~dliV~G~~~~~~~~~~~---~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+ ++.+. .+|++|+..-..+.+.++- ..+.....+..+. +|++++|.-
T Consensus 70 ~~hi~l~~--~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~-~plviaPam 121 (390)
T TIGR00521 70 ALHIDLAK--WADLILIAPATANTISKIAHGIADDLVSTTALAAS-APIILAPAM 121 (390)
T ss_pred cchhhccc--ccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhC-CCEEEEeCC
Confidence 11 23333 4888888876555544433 3344455556677 999999973
No 80
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=73.56 E-value=53 Score=27.47 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=41.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhc-cCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLC-RLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKA 111 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~-~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 111 (179)
.+|+|++.+...|..++.....+.. ..+.+++++||....... .+. ..+..+..++..+++..+
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~--s~~----~~~~~~~~~~~l~i~~~~ 80 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPN--ADS----WVKHCEQVCQQWQVPLVV 80 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcc--hHH----HHHHHHHHHHHcCCcEEE
Confidence 7899999999999988887776652 346789999997543211 111 112344445555666554
No 81
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=73.52 E-value=42 Score=26.25 Aligned_cols=119 Identities=13% Similarity=-0.004 Sum_probs=60.3
Q ss_pred EEecC-CcchHHHHHHHHHHhccCCCEEEEEEEecCCc--hhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--HH
Q 030298 46 IAVDH-GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ--NQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--AK 120 (179)
Q Consensus 46 v~vd~-s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~ 120 (179)
-|+|. ..-...+++.-+++....|. ..+.+..... .....++..+.++...+... ..+.+-..+.. +. .-
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~~~Gv--~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~--~~~pvi~gv~~-~t~~~i 84 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLLSYGA--AALFAAGGTGEFFSLTPDEYAQVVRAAVEETA--GRVPVLAGAGY-GTATAI 84 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCC--CEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCCEEEecCC-CHHHHH
Confidence 34443 23345556555555554443 3333333222 12223334444444333321 23444443332 43 33
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+.+.+++.++|-+++-.........--+-.--..|+..++ +|+++...
T Consensus 85 ~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~-~pi~lYn~ 133 (289)
T cd00951 85 AYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTD-LGVIVYNR 133 (289)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEeC
Confidence 45677899999999997765433222111122355777788 99999863
No 82
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=73.21 E-value=50 Score=27.00 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 62 LIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 62 ~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
+..|...|.+++++ |.+..+..... ++..+.+.+.|+++... ..+....+ ....++|.+++|+.+-
T Consensus 192 i~~a~~~gk~f~V~-v~EsRP~~qG~--------rlta~eL~~~GIpvtlI--~Dsa~~~~---m~~~~Vd~VivGAD~I 257 (363)
T PRK05772 192 VKLAKALGMSVSVI-APETRPWLQGS--------RLTVYELMEEGIKVTLI--TDTAVGLV---MYKDMVNNVMVGADRI 257 (363)
T ss_pred HHHHHHCCCeEEEE-ECCCCccchhH--------HHHHHHHHHCCCCEEEE--ehhHHHHH---HhhcCCCEEEECccEE
Confidence 34555556677766 44443321110 11112244457887632 23322222 2335699999999863
Q ss_pred CC---ccccccCchhHHHH-hcCCCCcEEEEcCC
Q 030298 142 GL---IQSVLQGSVGEYCL-HHCKTAPIIVVPGK 171 (179)
Q Consensus 142 ~~---~~~~~~gs~~~~ll-~~~~~~pVlvv~~~ 171 (179)
.. .-. -.|+..-.++ ++.. +|++++-+.
T Consensus 258 ~~NG~v~N-KiGTy~lA~~Ak~~~-vPfyV~ap~ 289 (363)
T PRK05772 258 LRDGHVFN-KIGTFKEAVIAHELG-IPFYALAPT 289 (363)
T ss_pred ecCCCEee-hhhhHHHHHHHHHhC-CCEEEEccc
Confidence 22 211 1366555555 4555 999998553
No 83
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=72.70 E-value=40 Score=26.12 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.-.+.+.|++.++|-+++.........+--.-..-++|+..++ +|+++...+
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~-~pi~lYn~P 135 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATD-LPVILYNVP 135 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCC-CCEEEEECh
Confidence 4455677899999988888664433222111234466777778 999988543
No 84
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=72.33 E-value=42 Score=25.77 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=43.0
Q ss_pred HHHHHhhhcCceeEEEEecC---C---hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 97 LAIEAMDVAMVRTKARIVEG---D---AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~g---~---~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++++.....++.+.+.- .| + ..+......++++.|++|+.+.....-. -.-++.++.... +|.+|+..
T Consensus 22 ~lDErAdRedI~vrv~g-sGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PG----P~~ARE~l~~~~-iP~IvI~D 95 (277)
T PRK00994 22 LLDERADREDIDVRVVG-SGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPG----PKKAREILKAAG-IPCIVIGD 95 (277)
T ss_pred HHHhhhcccCceEEEec-cCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCC----chHHHHHHHhcC-CCEEEEcC
Confidence 34444454566665432 33 1 2334445567899999999876432211 135788999999 99999965
Q ss_pred C
Q 030298 171 K 171 (179)
Q Consensus 171 ~ 171 (179)
.
T Consensus 96 ~ 96 (277)
T PRK00994 96 A 96 (277)
T ss_pred C
Confidence 3
No 85
>PRK02929 L-arabinose isomerase; Provisional
Probab=71.71 E-value=64 Score=27.60 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=53.6
Q ss_pred CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC--ChHHHHHHHHHHcC----CcEEEEeeCCCCC
Q 030298 70 DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAKVICKEAERLK----PAAVVIGSRGRGL 143 (179)
Q Consensus 70 ~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~~~~~I~~~a~~~~----~dliV~G~~~~~~ 143 (179)
-++.++...-.-+.+...+...+..++..+.+.....+.+++. ..+ +..+.|.+.+++.+ +|.||+-.+..++
T Consensus 7 ~~~w~~~g~q~lY~~~~l~~~~~~~~~i~~~l~~~~~~~~~vv-~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~ 85 (499)
T PRK02929 7 YEVWFVTGSQHLYGEETLRQVAEHAEEIVDGLNASGKLPVKIV-LKPVLTTPDEITAVCREANYDDNCAGVITWMHTFSP 85 (499)
T ss_pred ceEEEEEeeccccChhHHHHHHHHHHHHHHHhcccCCCCeEEE-EcCccCCHHHHHHHHHHccccCCCcEEEEccCCCch
Confidence 3566665544333332233333344443444333344566654 444 45666667777666 9999998776544
Q ss_pred ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 144 IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 144 ~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
. ...-.+++... +|||+...
T Consensus 86 a------~~~i~~~~~l~-~PvL~~~~ 105 (499)
T PRK02929 86 A------KMWIRGLSALQ-KPLLHLHT 105 (499)
T ss_pred H------HHHHHHHHHcC-CCEEEEec
Confidence 3 23445678889 99999865
No 86
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=71.54 E-value=30 Score=26.79 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=53.6
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEE--------
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKAR-------- 112 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------- 112 (179)
.++++|++.+...|......|... .|..+.++++..+.......+...... +.-|++.++.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~~p~~e~e~A~~~A--------~~iGi~H~~i~~~~~~~~ 85 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPYIPRREIEEAKNIA--------KEIGIRHEFIKMNRMDPE 85 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCCCChhhhhHHHHHH--------HHhCCcceeeehhhcchh
Confidence 359999999998887766655443 356788888766433221111111111 1112222211
Q ss_pred ----------EecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 113 ----------IVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 113 ----------~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.......+.|.+.|.+.++|.|+=|++.
T Consensus 86 ~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 86 FKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred hccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcH
Confidence 1123457789999999999999999864
No 87
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=71.18 E-value=7.8 Score=28.74 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=47.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccC-------------------CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHh
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRL-------------------ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAM 102 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~-------------------~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~ 102 (179)
..|.+.++......+.+++..+...+. =+.+.++.|.+......+.+..-+.++++ .+..
T Consensus 82 ~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l-~~~~ 160 (201)
T PF00834_consen 82 DYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIREL-RKLI 160 (201)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHH-HHHH
T ss_pred CEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHH-HHHH
Confidence 567777776665555555554332110 11233333333222223333444555553 3334
Q ss_pred hhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
...+..+... ..|.....-+..+.+.++|.+|.|+.
T Consensus 161 ~~~~~~~~I~-vDGGI~~~~~~~~~~aGad~~V~Gs~ 196 (201)
T PF00834_consen 161 PENGLDFEIE-VDGGINEENIKQLVEAGADIFVAGSA 196 (201)
T ss_dssp HHHTCGSEEE-EESSESTTTHHHHHHHT--EEEESHH
T ss_pred HhcCCceEEE-EECCCCHHHHHHHHHcCCCEEEECHH
Confidence 4445666654 35655555566666789999999963
No 88
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=71.18 E-value=38 Score=25.62 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=51.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHH-HHHHHHHHHHHHHhhhcCceeEEEEec---CCh
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYD-MSQGLMEKLAIEAMDVAMVRTKARIVE---GDA 118 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~---g~~ 118 (179)
++++.+.+.+.|..++-+|... . .-+.++++.+......+.. ...+.+ +...+..|++....... ++-
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~---~v~~L~t~~~~~~~s~~~H~~~~~~~----~~qA~algipl~~~~~~~~~e~~ 73 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H---EVISLVNIMPENEESYMFHGVNAHLT----DLQAESIGIPLIKLYTEGTEEDE 73 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C---eeEEEEEEecCCCCcccccccCHHHH----HHHHHHcCCCeEEeecCCCccHH
Confidence 3678889999999988888666 2 2344555555432222111 111222 23333445654322222 345
Q ss_pred HHHHHHHHHHcCCcEEEEeeC
Q 030298 119 AKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.+.+..++.+++.+|-|.-
T Consensus 74 ~e~l~~~l~~~gv~~vv~GdI 94 (223)
T TIGR00290 74 VEELKGILHTLDVEAVVFGAI 94 (223)
T ss_pred HHHHHHHHHHcCCCEEEECCc
Confidence 677777778889999999975
No 89
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=70.73 E-value=29 Score=26.14 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=31.1
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
.++|.+|+|++.....|...+..+....|-.+.++...
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~lP 191 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVIEIK 191 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47899999999999999888888888777777766543
No 90
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=70.28 E-value=35 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=35.6
Q ss_pred eEEEEecCChHHHHHHH---HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 109 TKARIVEGDAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 109 ~~~~~~~g~~~~~I~~~---a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.++.+..|+..+++... ....++|+||=. |+++..|-++.+ +||+-++-+..
T Consensus 30 ~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~-iPVv~i~~s~~ 84 (526)
T TIGR02329 30 ANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLS-LPVIVIKPTGF 84 (526)
T ss_pred ceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCC-CCEEEecCChh
Confidence 34456667665555533 446678887732 778888878888 99999887654
No 91
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=70.05 E-value=51 Score=25.85 Aligned_cols=122 Identities=9% Similarity=-0.007 Sum_probs=62.7
Q ss_pred EEEEecCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 44 ILIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 44 Ilv~vd~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
++-|+|.+ .-...+++.-+++....|. +.+.+.....+ ....++..+.++...+.. . ..+.+-..+...+..+
T Consensus 8 ~~TPf~~dg~iD~~~l~~lv~~~~~~Gv--~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~-~-g~~pvi~gv~~~~t~~ 83 (294)
T TIGR02313 8 LITPFKRNGDIDEEALRELIEFQIEGGS--HAISVGGTSGEPGSLTLEERKQAIENAIDQI-A-GRIPFAPGTGALNHDE 83 (294)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcCC--CEEEECccCcccccCCHHHHHHHHHHHHHHh-C-CCCcEEEECCcchHHH
Confidence 34455432 3345555555555554443 33444333222 222333344444433332 2 2344433333334444
Q ss_pred --HHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcC-CCCcEEEEcCC
Q 030298 121 --VICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHC-KTAPIIVVPGK 171 (179)
Q Consensus 121 --~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~-~~~pVlvv~~~ 171 (179)
.+.+.|++.++|-+++.........+ -+. .--..|+..+ + .||++...+
T Consensus 84 ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~-~~f~~ia~a~~~-lpv~iYn~P 136 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIVPYYNKPNQEALY-DHFAEVADAVPD-FPIIIYNIP 136 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCCCCHHHHH-HHHHHHHHhccC-CCEEEEeCc
Confidence 45678899999999999875444322 222 2335577778 6 999998543
No 92
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=69.70 E-value=43 Score=25.19 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=34.2
Q ss_pred EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 71 TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 71 ~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.++.|.+......+....-+.++++. +.....+..+.+.+ .|.....=+..+.+.++|.+|+|+.
T Consensus 131 ~vlvMtV~PGfgGq~fi~~~lekI~~l~-~~~~~~~~~~~I~v-dGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 131 LILLMSVNPGFGGQSFIPHTLDKLRAVR-KMIDESGRDIRLEI-DGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred eEEEEEecCCCCCceecHhHHHHHHHHH-HHHHhcCCCeeEEE-ECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 3444555443333223333333444433 22333455555444 4544344445566789999999965
No 93
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=69.49 E-value=54 Score=26.42 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=36.0
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCC---ccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL---IQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~---~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|+++.. ...+.... +....++|++++|+.+-.. .-.. .|+..-.++ ++.. +||+++-+
T Consensus 192 L~~~GI~vtl--I~Dsa~~~---~M~~~~Vd~VivGAd~I~aNG~v~NK-iGT~~lAl~Ak~~~-VPfyV~a~ 257 (329)
T PRK06371 192 LAQEGIDHAI--IADNAAGY---FMRKKEIDLVIVGADRIASNGDFANK-IGTYEKAVLAKVNG-IPFYVAAP 257 (329)
T ss_pred HHHCCCCEEE--EcccHHHH---HhhhcCCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcC-CCEEEecc
Confidence 4445777653 23333222 3334579999999986322 2222 366555555 5555 99999854
No 94
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=69.44 E-value=18 Score=22.11 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV 75 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v 75 (179)
.++|.+++|.+.....+.+...+.....+..+.++
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 37788888888777777666666665556555543
No 95
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.29 E-value=30 Score=22.83 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=27.6
Q ss_pred HHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 97 LAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.....++..|.++.. .-...+.+.+++.+.+.++|+|.++...
T Consensus 18 ~~~~~l~~~G~~V~~-lg~~~~~~~l~~~~~~~~pdvV~iS~~~ 60 (119)
T cd02067 18 IVARALRDAGFEVID-LGVDVPPEEIVEAAKEEDADAIGLSGLL 60 (119)
T ss_pred HHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 344555666766521 1123567788888888888888887663
No 96
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=68.95 E-value=13 Score=27.62 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+.+...+.+.++|.|.+|.+- .....-+..+...+-++.+ +||++.|....
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~-lPvilfp~~~~ 64 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITN-LPVILFPGNVN 64 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcC-CCEEEECCCcc
Confidence 345567778889999998662 2222222344455544577 99999987544
No 97
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=68.81 E-value=55 Score=25.70 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---- 115 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (179)
...+|.|-+.++.....++-.+... ...++++.++..... .+ ....+..|+++.+.-..
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~------------~~----~~lA~~~gIp~~~~~~~~~~~ 150 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHD------------DL----RSLVERFGIPFHHVPVTKETK 150 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcCh------------hH----HHHHHHhCCCEEEeccCcccc
Confidence 3468999888887777776666433 234666666655332 01 11134456776542211
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.+....+.+..++.++|++|+....
T Consensus 151 ~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 151 AEAEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred chhHHHHHHHHHHhCCCEEEEecch
Confidence 2345678899999999999999764
No 98
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.61 E-value=67 Score=26.86 Aligned_cols=115 Identities=10% Similarity=-0.001 Sum_probs=58.2
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~ 123 (179)
.+++-.++..+..+...|..+.. .+.++-++...... . ...+.+.. ..+..++++.......+..++|.
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~R-----i-aAvEQLk~----yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSR-----I-GTVQQLQD----YVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcc-----h-HHHHHHHH----HhhhcCCcEEecCCHHHHHHHHH
Confidence 45555677777777777877764 35566655542211 0 11112222 22334555543211123344444
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh-cCCCCcEEEEcC
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH-HCKTAPIIVVPG 170 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~-~~~~~pVlvv~~ 170 (179)
.+....++|+|++.+-|++......+..... ++. ..++..+|++..
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~-~lk~~~PdevlLVLsA 360 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNYRASETVEEMIE-TMGQVEPDYICLTLSA 360 (436)
T ss_pred HHHhccCCCEEEEeCccccCcCHHHHHHHHH-HHhhcCCCeEEEEECC
Confidence 4444457999999999887654444444433 333 334123455554
No 99
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=68.60 E-value=39 Score=23.89 Aligned_cols=62 Identities=8% Similarity=0.086 Sum_probs=34.9
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHHH---cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~~---~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|+.++..+..- ...+.+.+++++ .+++.+|.++..... .+--+...+. .||+-||...
T Consensus 23 L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~--------Lpgvva~~t~-~PVIgvP~~~ 88 (150)
T PF00731_consen 23 LEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAA--------LPGVVASLTT-LPVIGVPVSS 88 (150)
T ss_dssp HHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----------HHHHHHHHSS-S-EEEEEE-S
T ss_pred HHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCccc--------chhhheeccC-CCEEEeecCc
Confidence 344568887777664 345556666554 467888888775333 2333556678 9999998553
No 100
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=68.53 E-value=62 Score=26.37 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=35.8
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCC---ccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL---IQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~---~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|+++... -.+.. ..+..+..+|++|+|+.+-.. .-.. .|...-.++ ++.. +|++|+-+
T Consensus 215 L~~~GI~vtlI--~Dsav---~~~M~~~~Vd~VivGAd~I~~nG~v~NK-iGTy~lA~~Ak~~~-vPfyV~Ap 280 (356)
T PRK08334 215 YHYDGIPLKLI--SDNMA---GFVMQQGKVDAIIVGADRIVANGDFANK-IGTYTLAVLAKEHG-IPFFTVAP 280 (356)
T ss_pred HHHCCCCEEEE--ehhHH---HHHhhhcCCCEEEECccEEecCCCEeeh-hhHHHHHHHHHHhC-CCEEEEcc
Confidence 44567887642 22222 223344679999999986322 2221 355554555 5556 99999843
No 101
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=67.91 E-value=60 Score=25.79 Aligned_cols=107 Identities=8% Similarity=0.085 Sum_probs=56.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV 121 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (179)
..+++...+|......+ ..|...+.++.++ |.+..+.... .. ..+.+.+.|+++...+ .+ +
T Consensus 120 g~~IlTh~~S~~v~~~l----~~A~~~~k~~~V~-VtESRP~~eG--------~~-~ak~L~~~gI~~~~I~--Ds---a 180 (301)
T COG1184 120 GDVILTHSFSKTVLEVL----KTAADRGKRFKVI-VTESRPRGEG--------RI-MAKELRQSGIPVTVIV--DS---A 180 (301)
T ss_pred CCEEEEecCcHHHHHHH----HHhhhcCCceEEE-EEcCCCcchH--------HH-HHHHHHHcCCceEEEe--ch---H
Confidence 44555555665444433 4444445554444 3344332211 11 2233455577765432 22 4
Q ss_pred HHHHHHHcCCcEEEEeeCCCC---CccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRG---LIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~---~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..+.++ +|.+++|+..-. .+-...-.+..--..++.. .|++++-.
T Consensus 181 ~~~~~~~--vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~-~Pf~v~ae 229 (301)
T COG1184 181 VGAFMSR--VDKVLVGADAILANGALVNKIGTSPLALAARELR-VPFYVVAE 229 (301)
T ss_pred HHHHHHh--CCEEEECccceecCCcEEeccchHHHHHHHHHhC-CCEEEEee
Confidence 4455566 999999998632 3333332334444567788 99999854
No 102
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=67.48 E-value=57 Score=25.40 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=60.8
Q ss_pred EEEecCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--H
Q 030298 45 LIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--A 119 (179)
Q Consensus 45 lv~vd~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~ 119 (179)
+-|+|.+ .-...+++.-+++....|. ..+.+.....+ ....++..+.++...+.. . ..+.+-..+...+. .
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~~Gv--~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~-~-~~~~vi~gv~~~~~~~~ 85 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIANGT--DGLVVVGTTGESPTLTHEEHEELIRAVVEAV-N-GRVPVIAGTGSNSTAEA 85 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCC--CEEEECCcCCccccCCHHHHHHHHHHHHHHh-C-CCCcEEeecCCchHHHH
Confidence 3344332 3344555555555554443 33333333222 122333344444433332 2 22444333333344 3
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
-.+.+.+++.++|-+++.........+--+-..-.+|+..++ .|+++...+
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~-~pv~lYn~P 136 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD-LPIILYNVP 136 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECc
Confidence 455577899999999987664433222111133456777788 999998543
No 103
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=67.39 E-value=12 Score=27.42 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=28.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
++|++++.++-.+-.+.+.+..|.+..|.+++++-
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv~ 36 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLVI 36 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEEE
Confidence 78999999999999999988888665577776664
No 104
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=67.18 E-value=64 Score=25.99 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=49.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
-.++|++.+...|..++..+.. ..|-+..++|+....... ...+. ++...+..|++..+....
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~---~~gl~~l~vt~~~~~~~e----~~~~n----~~~~~~~lgvd~~~i~~d~~~~~~ 128 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKK---KLGLNPLLVTVDPGWNTE----LGVKN----LNNLIKKLGFDLHTITINPETFRK 128 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHH---HhCCceEEEEECCCCCCH----HHHHH----HHHHHHHcCCCeEEEeCCHHHHHH
Confidence 3599999999888887655532 345566667775432211 11111 122222223332222111
Q ss_pred -----------------CChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 116 -----------------GDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 116 -----------------g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
.-....+.++|+++++.+|+-|.+..
T Consensus 129 l~~~~~~~~~~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~d 171 (343)
T TIGR03573 129 LQRAYFKKVGDPEWPQDHAIFASVYQVALKFNIPLIIWGENIA 171 (343)
T ss_pred HHHHHHhccCCCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHH
Confidence 12345677899999999999997753
No 105
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=66.98 E-value=58 Score=26.38 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=36.4
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCC---ccccccCchhHHHH-hcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL---IQSVLQGSVGEYCL-HHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~---~~~~~~gs~~~~ll-~~~~~~pVlvv~~~ 171 (179)
+...|++++.. ..+... .+....++|.+++|+.+-.. .-.. .|+..-.++ ++.. +|++++-+.
T Consensus 202 L~~~GI~vtlI--~Dsa~~---~~M~~~~vd~VivGAd~I~~nG~v~Nk-iGT~~lAl~Ak~~~-vPfyV~a~~ 268 (344)
T PRK05720 202 LYQAGIDVTVI--TDNMAA---HLMQTGKIDAVIVGADRIAANGDVANK-IGTYQLAIAAKYHG-VPFYVAAPS 268 (344)
T ss_pred HHHCCCCEEEE--cccHHH---HHhcccCCCEEEEcccEEecCCCEeeh-hhHHHHHHHHHHhC-CCEEEeccc
Confidence 44557877632 333222 23334579999999976321 2222 366555555 5555 999998554
No 106
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=66.87 E-value=33 Score=27.12 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=21.8
Q ss_pred CCcEEEEeeCCCCCccccccCc--hhHHHHhcCCCCcEEEE
Q 030298 130 KPAAVVIGSRGRGLIQSVLQGS--VGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 130 ~~dliV~G~~~~~~~~~~~~gs--~~~~ll~~~~~~pVlvv 168 (179)
++|+||+++.|.+...=+.|.+ +++.| ..++ +||+.-
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai-~~~~-~Pvisa 113 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAI-AASP-IPVISA 113 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHH-HhCC-CCEEEe
Confidence 5899999976654322233333 44433 4577 887653
No 107
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=66.81 E-value=33 Score=29.55 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=39.7
Q ss_pred HHHHHHHhhhcCceeEEEEecCChHHHHH---HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 95 EKLAIEAMDVAMVRTKARIVEGDAAKVIC---KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~I~---~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
...+.......+...++.+..+...+++. +.....++|+||-. |+++..|-++.+ +||+-++-+
T Consensus 26 ~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~dviIsr------------G~ta~~i~~~~~-iPVv~i~~s 92 (538)
T PRK15424 26 FELFRDISLEFDHLANITPIQLGFEKAVTYIRKRLATERCDAIIAA------------GSNGAYLKSRLS-VPVILIKPS 92 (538)
T ss_pred HHHHHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhhCCCcEEEEC------------chHHHHHHhhCC-CCEEEecCC
Confidence 33344444444444555555554433333 33445678887743 778888888888 999998766
Q ss_pred CC
Q 030298 172 EA 173 (179)
Q Consensus 172 ~~ 173 (179)
+.
T Consensus 93 ~~ 94 (538)
T PRK15424 93 GF 94 (538)
T ss_pred Hh
Confidence 54
No 108
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=66.72 E-value=68 Score=25.96 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=36.4
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCC--ccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL--IQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~--~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+.+.|+++... .. + ++..+.++.++|.+++|+.+-.. .-.. .|+..-.++ ++.. +|++++-+
T Consensus 203 L~~~GI~vtlI-~D-s---a~~~~M~~~~Vd~VivGAd~I~anGv~NK-iGT~~lA~~Ak~~~-vPfyV~ap 267 (339)
T PRK06036 203 LMQDNIPVTLI-TD-S---MAGIVMRQGMVDKVIVGADRITRDAVFNK-IGTYTHSVLAKEHE-IPFYVAAP 267 (339)
T ss_pred HHHcCCCEEEE-eh-h---HHHHHhccCCCCEEEECccchhhcCeehh-hhHHHHHHHHHHhC-CCEEEEee
Confidence 34567887643 22 2 23334445679999999986322 2111 366555555 4555 99999844
No 109
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=66.42 E-value=43 Score=25.52 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+....|++.+.+.+.|.|++|-+-. -..+ ..-.+.++|-.... .||++.|....
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~g-vt~~-~~~~~v~~ik~~~~-lPvilfP~~~~ 81 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDG-VTEE-NVDNVVEAIKERTD-LPVILFPGSPS 81 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCccc-ccHH-HHHHHHHHHHhhcC-CCEEEecCChh
Confidence 4567899999999999999996632 2212 12356677766788 99999988654
No 110
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=66.24 E-value=15 Score=25.41 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCC--C--ccccccCchhHHHHhcC-CCCcEEEEcCCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRG--L--IQSVLQGSVGEYCLHHC-KTAPIIVVPGKE 172 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~--~--~~~~~~gs~~~~ll~~~-~~~pVlvv~~~~ 172 (179)
+...+.|.+++++++++.||+|-.... . ......-..++.|.... + +||..+-...
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~-ipV~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPG-IPVILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-T-SEEEEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCC-CcEEEECCCh
Confidence 367999999999999999999985321 1 11122345567777776 6 9999986543
No 111
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=66.17 E-value=31 Score=27.22 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=26.2
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
+++|++.+.-.|..++..+.+. .|.++.++|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5889999988888777766542 3567999998654
No 112
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=65.81 E-value=48 Score=25.62 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV 121 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (179)
...++....|..-...+.. |...+.++.++ |.+..+.... ... ... +...|+++++. ....
T Consensus 108 ~~~ILT~~~S~~v~~~l~~----a~~~~~~~~V~-v~es~P~~eG----~~~----a~~-L~~~gi~v~~i--~d~~--- 168 (282)
T PF01008_consen 108 GDTILTHGYSSTVERFLLS----AKKKGKKFRVI-VLESRPYNEG----RLM----AKE-LAEAGIPVTLI--PDSA--- 168 (282)
T ss_dssp TEEEEEES--SHHHHHHHH----HHHTTEEEEEE-EE--TTTTHH----HTH----HHH-HHHTT-EEEEE---GGG---
T ss_pred CeEEEEeCCchHHHHHHHH----HHHcCCeEEEE-EccCCcchhh----hhH----HHH-hhhcceeEEEE--echH---
Confidence 5566667766654444443 44445566664 4454332211 111 222 23346776543 2222
Q ss_pred HHHHHHHcCCcEEEEeeCCC---CCccccccCchhHHHH-hcCCCCcEEEEcCC
Q 030298 122 ICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCL-HHCKTAPIIVVPGK 171 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~ll-~~~~~~pVlvv~~~ 171 (179)
+..+.+. ++|.+++|+..- |..... .|+..-.++ ++.. +||+++-+.
T Consensus 169 ~~~~m~~-~vd~VliGad~v~~nG~v~nk-~Gt~~~a~~Ak~~~-vPv~v~~~~ 219 (282)
T PF01008_consen 169 VGYVMPR-DVDKVLIGADAVLANGGVVNK-VGTLQLALAAKEFN-VPVYVLAES 219 (282)
T ss_dssp HHHHHHC-TESEEEEE-SEEETTS-EEEE-TTHHHHHHHHHHTT--EEEEE--G
T ss_pred HHHHHHH-hCCeeEEeeeEEecCCCEeeh-hhHHHHHHHHHhhC-CCEEEEccc
Confidence 2223333 699999999752 222222 366544444 5566 999998543
No 113
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=65.72 E-value=63 Score=25.29 Aligned_cols=83 Identities=12% Similarity=0.040 Sum_probs=51.5
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-C---
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-G--- 116 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g--- 116 (179)
.++|.|-+.++.+...++-.+..- ...++++.++-...+. . . ...+..|+++.+.-.. .
T Consensus 84 ~~ki~vl~Sg~g~nl~~l~~~~~~-g~l~~~i~~visn~~~--------~----~----~~A~~~gIp~~~~~~~~~~~~ 146 (280)
T TIGR00655 84 LKRVAILVSKEDHCLGDLLWRWYS-GELDAEIALVISNHED--------L----R----SLVERFGIPFHYIPATKDNRV 146 (280)
T ss_pred CcEEEEEEcCCChhHHHHHHHHHc-CCCCcEEEEEEEcChh--------H----H----HHHHHhCCCEEEcCCCCcchh
Confidence 478999999998888877766433 3345666555443321 0 0 1134456766533221 1
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.....+++..++.++|++|+....
T Consensus 147 ~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 147 EHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred hhHHHHHHHHHHhCCCEEEEeCch
Confidence 234678898999999999999654
No 114
>PHA02031 putative DnaG-like primase
Probab=65.62 E-value=26 Score=27.24 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
.++|++++|++.....|...|+.+....+..+.++.+.+
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~lP~ 244 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIITPD 244 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEECCC
Confidence 378999999998888888888888877777777776643
No 115
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=65.06 E-value=42 Score=24.64 Aligned_cols=69 Identities=9% Similarity=0.017 Sum_probs=42.4
Q ss_pred HHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCC--CCcEEEE
Q 030298 97 LAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCK--TAPIIVV 168 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~--~~pVlvv 168 (179)
.....++..|.++.. .-.+-+.+.+++.+.+.++|+|.++......... +....+.+-+..+ +++|++-
T Consensus 101 ~v~~~l~~~G~~vi~-lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 101 LVATMLEANGFEVID-LGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEE
Confidence 344556667777521 1123589999999999999999999864443333 2344554544432 2555553
No 116
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=64.94 E-value=11 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=18.1
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIH 73 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ 73 (179)
.++|.+++|++.....+..+........+-+++
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 477888888877777777666665554444444
No 117
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=64.89 E-value=13 Score=30.27 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHcCCcEEEEee
Q 030298 118 AAKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~ 138 (179)
....+++.|++.++|+||++-
T Consensus 28 ~f~~~l~~a~~~~vD~vliAG 48 (390)
T COG0420 28 AFDELLEIAKEEKVDFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHccCCEEEEcc
Confidence 345566666666677777664
No 118
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=64.77 E-value=80 Score=26.11 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
+|++++.+.-.|..++.++.+. |.+++.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5889999998888888776543 678999998655
No 119
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=64.77 E-value=66 Score=25.17 Aligned_cols=123 Identities=10% Similarity=-0.036 Sum_probs=60.4
Q ss_pred EEEecCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--H
Q 030298 45 LIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--A 119 (179)
Q Consensus 45 lv~vd~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~ 119 (179)
+-|+|.+ .-...+++.-+++....| .++.+.+.....+ ....++..+.++...+.. . ..+.+-..+...+. .
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~~i~~G-~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~-~-~~~pvi~gv~~~~t~~~ 85 (290)
T TIGR00683 9 LVSFNEDGTINEKGLRQIIRHNIDKM-KVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA-K-DQIALIAQVGSVNLKEA 85 (290)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHhCC-CcCEEEECCcccccccCCHHHHHHHHHHHHHHh-C-CCCcEEEecCCCCHHHH
Confidence 3445432 334555555555554444 1444444433222 222333344444433332 1 22444333332343 4
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC-CCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC-KTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~-~~~pVlvv~~~ 171 (179)
-.+.+.+++.++|-+++.........+--+-.--..|...+ + .|+++...+
T Consensus 86 i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~-lpv~lYn~P 137 (290)
T TIGR00683 86 VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGG-LNMIVYSIP 137 (290)
T ss_pred HHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCC-CCEEEEeCc
Confidence 45568889999999999776443322211112234566656 6 999998654
No 120
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=64.74 E-value=66 Score=25.18 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=61.2
Q ss_pred EEEEecCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 44 ILIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 44 Ilv~vd~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
++-|+|.+ .-...+++.-+++....|. ..+.+.....+ ....++..+.++...+.. . ..+.+-..+- .+..+
T Consensus 13 ~vTPf~~dg~iD~~~l~~li~~l~~~Gv--~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~-g~~pvi~gv~-~~t~~ 87 (296)
T TIGR03249 13 PVTPFDADGSFDEAAYRENIEWLLGYGL--EALFAAGGTGEFFSLTPAEYEQVVEIAVSTA-K-GKVPVYTGVG-GNTSD 87 (296)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHhcCC--CEEEECCCCcCcccCCHHHHHHHHHHHHHHh-C-CCCcEEEecC-ccHHH
Confidence 33455432 3455666666666655454 33333333222 222334444444433332 1 2244443332 23433
Q ss_pred --HHHHHHHHcCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEc
Q 030298 121 --VICKEAERLKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 121 --~I~~~a~~~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.+.+++.++|-+++-........ +-+. .--..|+..++ +||++..
T Consensus 88 ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~-~~f~~v~~a~~-~pvilYn 137 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLLPPYLINGEQEGLY-AHVEAVCESTD-LGVIVYQ 137 (296)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCCCCHHHHH-HHHHHHHhccC-CCEEEEe
Confidence 4667889999999988765443322 2221 23355777788 9999986
No 121
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=64.08 E-value=19 Score=24.70 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC-CC---ccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR-GL---IQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~-~~---~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
...+.|.++.++++++.||+|-.-. ++ ......-..+++|-...+ +||..+-..
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~-~~v~~~DEr 92 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFG-VPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhC-CCEEEEcCC
Confidence 4578899999999999999995422 11 111112345677766678 999988554
No 122
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=63.96 E-value=56 Score=26.85 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=29.9
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
|-...+++++.+.+...|..|.-.. .+.|.++..+|+..
T Consensus 176 PvGs~gkvlvllSGGiDSpVAa~ll----~krG~~V~~v~f~~ 214 (381)
T PRK08384 176 PIGTQGKVVALLSGGIDSPVAAFLM----MKRGVEVIPVHIYM 214 (381)
T ss_pred ccCCCCcEEEEEeCChHHHHHHHHH----HHcCCeEEEEEEEe
Confidence 5566799999999998887754443 34588999999954
No 123
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=63.87 E-value=60 Score=24.36 Aligned_cols=54 Identities=13% Similarity=-0.023 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC----CCcc----ccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR----GLIQ----SVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~----~~~~----~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
..+.|++.+...++++||+..-.. .... ..++ ..-.++..... |.|+++....+
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~-~~L~~~a~~~g-~avl~v~H~~K 160 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVI-KALRRIAAQTG-AAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHH-HHHHHHHHHhC-CEEEEEeccCc
Confidence 355666667677899999995321 0000 0111 12234455667 99999976543
No 124
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=62.64 E-value=38 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 96 KLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.+....++..|+++.. .-...+.+.+++.|.++++|+|.+++--
T Consensus 17 niv~~~L~~~GfeVid-LG~~v~~e~~v~aa~~~~adiVglS~L~ 60 (128)
T cd02072 17 KILDHAFTEAGFNVVN-LGVLSPQEEFIDAAIETDADAILVSSLY 60 (128)
T ss_pred HHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 3455566777776531 1113578999999999999999998753
No 125
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=61.98 E-value=80 Score=25.14 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=51.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
++++|++.+.-.|..++..+.+. .|.+++++|+....... .. .+...+...+..|++..+.-..
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~~~~---~E----~e~~~~~~~~~lgi~~~vvd~~e~fl~~ 86 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGLLRK---GE----AEQVVKTFGDRLGLNLVYVDAKERFLSA 86 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCCCCh---HH----HHHHHHHHHHHcCCcEEEEeCcHHHHhh
Confidence 78999999998887776655442 35689999997653321 11 1111112222334443322111
Q ss_pred --C--Ch-----------HHHHHHHHHHcC-CcEEEEeeCC
Q 030298 116 --G--DA-----------AKVICKEAERLK-PAAVVIGSRG 140 (179)
Q Consensus 116 --g--~~-----------~~~I~~~a~~~~-~dliV~G~~~ 140 (179)
| ++ ...+.++|++.+ ++.|+.|+..
T Consensus 87 l~~v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~ 127 (311)
T TIGR00884 87 LKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIY 127 (311)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
Confidence 1 11 123556688888 9999999874
No 126
>PRK08005 epimerase; Validated
Probab=61.93 E-value=44 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=20.4
Q ss_pred EecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 113 IVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 113 ~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
...|.....-+..+.+.++|.+|+|+.
T Consensus 167 ~VDGGI~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 167 WADGGITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 346766666666777789999999954
No 127
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=61.91 E-value=84 Score=25.38 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.7
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
...+.++|++.++|.|+.|.+.+
T Consensus 102 f~~l~~~A~~~g~~~IatGHya~ 124 (349)
T cd01998 102 FGALLDYAKKLGADYIATGHYAR 124 (349)
T ss_pred HHHHHHHHHHcCcCEEEECCcCC
Confidence 34666789999999999998765
No 128
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=61.15 E-value=78 Score=24.74 Aligned_cols=113 Identities=14% Similarity=0.020 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhcc-CCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 54 SKHAFDWALIHLCR-LADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 54 s~~al~~a~~la~~-~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
...+++.-+++... .| +..+.+.....+ ....++..+.++...+.. . ..+.+-.-+-..+..+ .+.+.|++
T Consensus 22 D~~~~~~li~~l~~~~G--v~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~-~-~~~~viagvg~~~t~~ai~~a~~a~~ 97 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQG--IDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEA-K-GKVKLIAQVGSVNTAEAQELAKYATE 97 (293)
T ss_pred CHHHHHHHHHHHHhcCC--CCEEEECCCccccccCCHHHHHHHHHHHHHHh-C-CCCCEEecCCCCCHHHHHHHHHHHHH
Confidence 45555555555544 44 333444333222 222333334444433332 2 1233332222223433 45577899
Q ss_pred cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++|-+++-........+--+-.--+.|+..++ .||++...+
T Consensus 98 ~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~-lPv~iYn~P 139 (293)
T PRK04147 98 LGYDAISAVTPFYYPFSFEEICDYYREIIDSAD-NPMIVYNIP 139 (293)
T ss_pred cCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC-CCEEEEeCc
Confidence 999999998765433222111123355777888 999998643
No 129
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=60.79 E-value=99 Score=26.99 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=55.9
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA 118 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 118 (179)
...++|+|.-|.+-..-.+-.......+..|..-...++....... +......++.+. + .+.+.-+.+--|..
T Consensus 67 ~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eG--YGl~~~~i~~~~----~-~~~~LiItvD~Gi~ 139 (575)
T PRK11070 67 REGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDG--YGLSPEVVDQAH----A-RGAQLIVTVDNGIS 139 (575)
T ss_pred HCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCC--CCCCHHHHHHHH----h-cCCCEEEEEcCCcC
Confidence 4558999999987665555555555566667632223333221111 112223333322 1 24555444545777
Q ss_pred HHHHHHHHHHcCCcEEEEeeCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~ 140 (179)
...-+++|++.+.|+||...|.
T Consensus 140 ~~e~i~~a~~~gidvIVtDHH~ 161 (575)
T PRK11070 140 SHAGVAHAHALGIPVLVTDHHL 161 (575)
T ss_pred CHHHHHHHHHCCCCEEEECCCC
Confidence 7788899999999999999774
No 130
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=60.77 E-value=58 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=27.8
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
+++|++.+...|..++..+.+ .|.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 489999999988887777765 37789999997654
No 131
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.71 E-value=44 Score=21.81 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=8.6
Q ss_pred HHHHHHHHHcCCcEEEEee
Q 030298 120 KVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~ 138 (179)
+.+.+.+++.++|+|.++.
T Consensus 41 ~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEc
Confidence 4444444444444444443
No 132
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=60.67 E-value=83 Score=24.95 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=35.2
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCC---CccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRG---LIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~---~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+.+.|++++.. ..+... .+.+..++|++++|+..-- ..-.. .|+..-.++ ++.. +||+++-+
T Consensus 174 L~~~gI~vtlI--~Dsa~~---~~m~~~~vd~VlvGAd~v~~nG~v~nk-~GT~~lA~~Ak~~~-vPv~V~a~ 239 (303)
T TIGR00524 174 LMQDGIDVTLI--TDSMAA---YFMQKGEIDAVIVGADRIARNGDVANK-IGTYQLAVLAKEFR-IPFFVAAP 239 (303)
T ss_pred HHHCCCCEEEE--ChhHHH---HHccccCCCEEEEcccEEecCCCEeEh-hhHHHHHHHHHHhC-CCEEEecc
Confidence 34457776632 222222 2334356999999997632 22222 355444455 5566 99999854
No 133
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=59.74 E-value=15 Score=30.68 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=28.3
Q ss_pred C-ChHHHHHHHH----HHcCCcEEEEeeCCCCCccccccCc--hhHHHHhcCCCCcEEEE
Q 030298 116 G-DAAKVICKEA----ERLKPAAVVIGSRGRGLIQSVLQGS--VGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 116 g-~~~~~I~~~a----~~~~~dliV~G~~~~~~~~~~~~gs--~~~~ll~~~~~~pVlvv 168 (179)
| .....|+... ...++|+||++..|.+...=+.|.+ +++. +..++ +||+.-
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~ra-i~~~~-~Pvis~ 225 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARA-IFLSK-IPIISA 225 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHH-HHcCC-CCEEEe
Confidence 6 3445554433 3344899999977654433233433 3343 35577 887654
No 134
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.51 E-value=1.1e+02 Score=25.77 Aligned_cols=112 Identities=21% Similarity=0.109 Sum_probs=67.8
Q ss_pred CeEEEEecCCc-chHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCce-eEEEEecCChH
Q 030298 42 RDILIAVDHGP-NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVR-TKARIVEGDAA 119 (179)
Q Consensus 42 ~~Ilv~vd~s~-~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~g~~~ 119 (179)
.-||+.=|+.- .|.-+++.+.++|++. .++||...... ++.+-..+++ ++. -...+....-.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~--------~QiklRA~RL----~~~~~~l~l~aEt~~ 157 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESL--------QQIKLRADRL----GLPTNNLYLLAETNL 157 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCH--------HHHHHHHHHh----CCCccceEEehhcCH
Confidence 56788888764 4666788888888764 77888764321 1111112221 222 23344556678
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccc---cccCchhH---------HHHhcCCCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQS---VLQGSVGE---------YCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~---~~~gs~~~---------~ll~~~~~~pVlvv~~~ 171 (179)
+.|++...+.++|++|+.+-. +-+.. ---||+++ +++++.. +++++|-.-
T Consensus 158 e~I~~~l~~~~p~lvVIDSIQ-T~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~-i~~fiVGHV 219 (456)
T COG1066 158 EDIIAELEQEKPDLVVIDSIQ-TLYSEEITSAPGSVSQVREVAAELMRLAKTKN-IAIFIVGHV 219 (456)
T ss_pred HHHHHHHHhcCCCEEEEeccc-eeecccccCCCCcHHHHHHHHHHHHHHHHHcC-CeEEEEEEE
Confidence 899999999999999999753 11111 12244433 3445566 899888543
No 135
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=59.09 E-value=22 Score=24.04 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=59.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEE---EecCCh
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKAR---IVEGDA 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~g~~ 118 (179)
|+|++++.++.....+.++..++.+. |.+++++.-. ...+.+.... ..+-++... ...++.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~S~----------~A~~~~~~~~-----~~~~~v~~~~~~~~~~~~ 64 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVLSP----------SAERFVTPEG-----LTGEPVYTDWDTWDRGDP 64 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEESH----------HHHHHSHHHG-----HCCSCEECTHCTCSTTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEECC----------cHHHHhhhhc-----cccchhhhccccCCCCCC
Confidence 58999999999988888888777665 7777666421 1122222211 111111111 112333
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCcccc---ccCchhHHHHhcC---CCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSV---LQGSVGEYCLHHC---KTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~---~~gs~~~~ll~~~---~~~pVlvv~~~ 171 (179)
... ++.++. +|++|+..-..+.+.++ +..+....++... . .||+++|..
T Consensus 65 ~~~-~~~~~~--~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~-~pvvi~P~m 119 (129)
T PF02441_consen 65 AEH-IELSRW--ADAMVVAPATANTLAKIANGIADNLLTRVALAALKEG-KPVVIAPAM 119 (129)
T ss_dssp TCH-HHHHHT--ESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTT-CGEEEEEEE
T ss_pred cCc-cccccc--CCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCC-CCeEEEEeC
Confidence 333 333555 99999987544333332 2234455555555 7 999999864
No 136
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=59.07 E-value=49 Score=27.27 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=62.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHH-HHHHhhhcCceeEEEEecCChHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKL-AIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
++|++++.++-.+-.+++.+..|- +.|+.+.++--... .+....+ ++....+ .+.. ..+.....
T Consensus 5 k~ill~v~gsiaayk~~~l~r~L~-~~ga~v~vvmt~~a----------~~fv~p~~~~~~s~~---~v~t-~~~~~~~~ 69 (392)
T COG0452 5 KRILLGVTGSIAAYKSVELVRLLR-RSGAEVRVVMTESA----------RKFITPLTFQALSGN---PVYT-LLDEELTG 69 (392)
T ss_pred ceEEEEecCchhhhhHHHHHHHHh-hCCCeeEEEcchhh----------hhhcCcccHHHhhCC---Cccc-cccccccc
Confidence 699999999999888888775554 45888877743221 1111111 2222221 1111 22211111
Q ss_pred H--HHHHHHHcCCcEEEEeeCCCCCccccc---cCchhHHHHhcCCCCcEEEEcCCC
Q 030298 121 V--ICKEAERLKPAAVVIGSRGRGLIQSVL---QGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 121 ~--I~~~a~~~~~dliV~G~~~~~~~~~~~---~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
. =+.+++ .+|++++.....+.+.+.- ....+...+..+. +|++++|.-.
T Consensus 70 ~~~HI~l~~--~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~-~p~~~aPamn 123 (392)
T COG0452 70 SVEHIELAR--WADLLLVAPATANTIAKLAVGIADNLSTTTLLAAK-APLVLAPAMN 123 (392)
T ss_pred cccHhhhhh--ccCEEEecCCChhHHHHHHHhhhccHHHHHHHHhc-CcEEEecCcC
Confidence 2 234444 4999999876655554422 2233334455677 8999988643
No 137
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=58.82 E-value=39 Score=23.34 Aligned_cols=43 Identities=19% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 96 KLAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
......++..|+++. -.. ..+.+.+++.|+++++|+|.+++--
T Consensus 19 ~iv~~~l~~~GfeVi--~LG~~v~~e~~v~aa~~~~adiVglS~l~ 62 (134)
T TIGR01501 19 KILDHAFTNAGFNVV--NLGVLSPQEEFIKAAIETKADAILVSSLY 62 (134)
T ss_pred HHHHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEeccc
Confidence 344556666776653 222 2578899999999999999888754
No 138
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=58.81 E-value=99 Score=25.21 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=31.0
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
|-..-.++++++.+.-.|..++.++.+ .|.+++++|+...
T Consensus 168 P~g~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 168 PVGTQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred CcCcCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 456669999999999888887765533 4789999998743
No 139
>PRK08576 hypothetical protein; Provisional
Probab=58.64 E-value=1.1e+02 Score=25.72 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=50.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEE-E-----e--
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKAR-I-----V-- 114 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-----~-- 114 (179)
+|+|++.+...|..++..+.+... .+.++++......... .+. .++..+..++++... + .
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e~pet----~e~----~~~lae~LGI~lii~~v~~~~~~~~ 303 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYEMPLT----DEY----VEKVAEKLGVDLIRAGVDVPMPIEK 303 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCCChHH----HHH----HHHHHHHcCCCEEEcccCHHHHhhh
Confidence 899999999999998877766532 3778887543222111 112 222233334544320 0 0
Q ss_pred cC-----------ChHHHHHHHHHHcCCcEEEEeeC
Q 030298 115 EG-----------DAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 115 ~g-----------~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.| .-...+.+++++.+.+.++.|.+
T Consensus 304 ~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R 339 (438)
T PRK08576 304 YGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR 339 (438)
T ss_pred cCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 01 01346777888899999999975
No 140
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=58.41 E-value=99 Score=25.07 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=24.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
++|+|++.+...|..++..+.+ .+.++..+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 3799999998888776665544 35688888884
No 141
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=57.86 E-value=19 Score=23.74 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=38.7
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
++.++..|+++++ ...+.. .+-+.....++|+|++|..-+ +.. .-..++..... +||.++++....
T Consensus 22 k~~~~e~gi~~~i--~a~~~~-e~~~~~~~~~~DvIll~PQi~-----~~~-~~i~~~~~~~~-ipv~~I~~~~Y~ 87 (104)
T PRK09590 22 TEYLKEQGKDIEV--DAITAT-EGEKAIAAAEYDLYLVSPQTK-----MYF-KQFEEAGAKVG-KPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHCCCceEE--EEecHH-HHHHhhccCCCCEEEEChHHH-----HHH-HHHHHHhhhcC-CCEEEeCHHHcC
Confidence 4445556776553 233332 344454556799999996632 111 22355666667 999999876554
No 142
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=57.86 E-value=20 Score=23.03 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
++.++..|+++++. ..+.. .+-+... ++|+|++|..-+..+ ...++++...+ +||.++++....
T Consensus 24 ~~~~~~~gi~~~v~--a~~~~-~~~~~~~--~~Dvill~pqi~~~~------~~i~~~~~~~~-ipv~~I~~~~Y~ 87 (95)
T TIGR00853 24 NKAAEEYGVPVKIA--AGSYG-AAGEKLD--DADVVLLAPQVAYML------PDLKKETDKKG-IPVEVINGAQYG 87 (95)
T ss_pred HHHHHHCCCcEEEE--EecHH-HHHhhcC--CCCEEEECchHHHHH------HHHHHHhhhcC-CCEEEeChhhcc
Confidence 34445567776533 32222 2333333 489999997633222 22355667778 999999876554
No 143
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=57.79 E-value=29 Score=28.09 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=35.5
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCC-EEEEEEEecC
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLAD-TIHLVHAVSS 80 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~-~l~~v~v~~~ 80 (179)
.+.+|.|.+.+.+.|.-.+..++.+++..+. ++.++|+.-.
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E 67 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWE 67 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcch
Confidence 4588999999999999999999999999875 8998887543
No 144
>PRK00074 guaA GMP synthase; Reviewed
Probab=57.69 E-value=1.2e+02 Score=25.93 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=52.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe-------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV------- 114 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------- 114 (179)
++++|++.+...|..++..+.+. .|.++.++|+....... .. .+...+...+..|++..+.-.
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~g~~~~---~e----~~~~~~~~a~~lgi~~~vvd~~~~f~~~ 285 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDHGLLRK---NE----AEQVMEMFREHFGLNLIHVDASDRFLSA 285 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeCCCCCH---HH----HHHHHHHHHHHcCCcEEEEccHHHHHHh
Confidence 78999999998888877766543 36689999996543211 11 112122222334444332211
Q ss_pred -cC--Ch-----------HHHHHHHHHHc-CCcEEEEeeCC
Q 030298 115 -EG--DA-----------AKVICKEAERL-KPAAVVIGSRG 140 (179)
Q Consensus 115 -~g--~~-----------~~~I~~~a~~~-~~dliV~G~~~ 140 (179)
.| ++ ...+.+.|++. +++.|+-|++.
T Consensus 286 l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~ 326 (511)
T PRK00074 286 LAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLY 326 (511)
T ss_pred ccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCc
Confidence 01 11 23456778888 99999999753
No 145
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=57.57 E-value=89 Score=24.28 Aligned_cols=123 Identities=10% Similarity=-0.018 Sum_probs=59.4
Q ss_pred EEEEecCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--
Q 030298 44 ILIAVDHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA-- 118 (179)
Q Consensus 44 Ilv~vd~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~-- 118 (179)
++-|+|.+ .-...+++.-++.....| ++.+.+.....+ ....++..+.++...+.. . ..+.+-..+...+.
T Consensus 6 ~~TPf~~~g~iD~~~~~~~i~~l~~~G--v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~-~-~~~~vi~gv~~~s~~~ 81 (285)
T TIGR00674 6 LITPFKEDGSVDFAALEKLIDFQIENG--TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLV-N-GRVPVIAGTGSNATEE 81 (285)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHHcC--CCEEEECccCcccccCCHHHHHHHHHHHHHHh-C-CCCeEEEeCCCccHHH
Confidence 34455432 334445555555544334 344444333222 122333344444433332 2 12333322222233
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.-.+.+.|++.++|-+++.........+--+-..-..|.+.++ .||++...+
T Consensus 82 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~-~pi~lYn~P 133 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD-LPIILYNVP 133 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECc
Confidence 3345577899999999998765433222111123355777788 999988543
No 146
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=57.33 E-value=16 Score=29.48 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
..+.|+..+++.++|++|.|.--.-+--...-|.++..+-.+.. +|++.-
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~-IP~vta 117 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLG-IPVVTA 117 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhC-CCEEEE
Confidence 57788899999999999999753323333445788888888899 999864
No 147
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=57.17 E-value=39 Score=23.14 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=34.9
Q ss_pred HHHHHHhhhcCceeEEEEecC-ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh
Q 030298 96 KLAIEAMDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH 158 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~ 158 (179)
.+....++..|+++. -... .+.+.+++.+.+.++|.|+|++...+.... +..+.+.+-.
T Consensus 20 ~iv~~~l~~~GfeVi--~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~--~~~~~~~L~~ 79 (132)
T TIGR00640 20 KVIATAYADLGFDVD--VGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTL--VPALRKELDK 79 (132)
T ss_pred HHHHHHHHhCCcEEE--ECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHH--HHHHHHHHHh
Confidence 445555666676653 2232 467788888888888888887664222221 2445555544
No 148
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.07 E-value=1.1e+02 Score=25.41 Aligned_cols=88 Identities=8% Similarity=-0.010 Sum_probs=46.1
Q ss_pred EEecCCcchHHHHHHHHHHh-ccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHH
Q 030298 46 IAVDHGPNSKHAFDWALIHL-CRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICK 124 (179)
Q Consensus 46 v~vd~s~~s~~al~~a~~la-~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~ 124 (179)
++-.+.-.+..+...|..++ ...+.++.++...+. . ....+.+..+ .+..++.+.......+....|.+
T Consensus 227 vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~---r---~~a~eqL~~~----a~~~~vp~~~~~~~~~l~~~l~~ 296 (424)
T PRK05703 227 VGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY---R---IGAVEQLKTY----AKIMGIPVEVVYDPKELAKALEQ 296 (424)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc---H---HHHHHHHHHH----HHHhCCceEccCCHHhHHHHHHH
Confidence 33355666777788888777 444667777765321 1 1111222222 22334554332222233333332
Q ss_pred HHHHcCCcEEEEeeCCCCCccc
Q 030298 125 EAERLKPAAVVIGSRGRGLIQS 146 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~~~~ 146 (179)
..++|+|++.+.++.....
T Consensus 297 ---~~~~DlVlIDt~G~~~~d~ 315 (424)
T PRK05703 297 ---LRDCDVILIDTAGRSQRDK 315 (424)
T ss_pred ---hCCCCEEEEeCCCCCCCCH
Confidence 3369999999988766543
No 149
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=56.82 E-value=1.3e+02 Score=25.77 Aligned_cols=76 Identities=8% Similarity=-0.063 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhhcCceeEEEEec-CChHHHHHHHHHHc----CCcEEEEeeCCCCCccccccCchhHHHHhcCCCC
Q 030298 89 MSQGLMEKLAIEAMDVAMVRTKARIVE-GDAAKVICKEAERL----KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTA 163 (179)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~----~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~ 163 (179)
...+..++..+.+.....+.+++.... -+..+.+.+.+++. ++|.||+-.+..++. ...-.+++... +
T Consensus 20 ~~~~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a------~~~i~~~~~l~-~ 92 (484)
T cd03557 20 QVAAHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTFSPA------KMWIAGLTALQ-K 92 (484)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCCchH------HHHHHHHHHcC-C
Confidence 333344443444333333556543322 14566666777664 589999987755443 23445678889 9
Q ss_pred cEEEEcCC
Q 030298 164 PIIVVPGK 171 (179)
Q Consensus 164 pVlvv~~~ 171 (179)
|||+....
T Consensus 93 PvL~~~~q 100 (484)
T cd03557 93 PLLHLHTQ 100 (484)
T ss_pred CEEEEccC
Confidence 99998654
No 150
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=56.78 E-value=76 Score=23.95 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=51.3
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHH-HHHHHHHHHHHHHhhhcCceeEEEEecC---Ch
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYD-MSQGLMEKLAIEAMDVAMVRTKARIVEG---DA 118 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~g---~~ 118 (179)
++++.+.+.+.|..|+-++.+- . .-..+++..+......... ...+ ..+...+..|++.......| +.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~---~-~V~~L~~~~~~~~~s~~~h~~~~~----~~~~qA~algiPl~~~~~~~~~e~~ 73 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE---H-EVISLVGVFSENEESYMFHSPNLH----LTDLVAEAVGIPLIKLYTSGEEEKE 73 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc---C-eeEEEEEEcCCCCCccccccCCHH----HHHHHHHHcCCCeEEEEcCCchhHH
Confidence 5788889999888888887663 2 2333344443322111111 1111 22333444567654444333 45
Q ss_pred HHHHHHHHHHcCCcEEEEeeC
Q 030298 119 AKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.+.+..++.+++-+|.|.=
T Consensus 74 ~~~l~~~l~~~gv~~vv~GdI 94 (222)
T TIGR00289 74 VEDLAGQLGELDVEALCIGAI 94 (222)
T ss_pred HHHHHHHHHHcCCCEEEECcc
Confidence 677777788889999999974
No 151
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.73 E-value=63 Score=24.11 Aligned_cols=68 Identities=10% Similarity=-0.011 Sum_probs=43.2
Q ss_pred HHHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEE
Q 030298 96 KLAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlv 167 (179)
......++..|.++. ... .-+.+.+++.+.+.++|+|.++.......... ..+.+.+-+...+++|++
T Consensus 106 ~iv~~~l~~~G~~Vi--~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~--~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 106 NLVGVILSNNGYEVI--DLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEM--VEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHHHHHhCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHH--HHHHHHHHhcCCCCeEEE
Confidence 345556666777753 233 35899999999999999999987744333322 445555544433255554
No 152
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=56.50 E-value=1.1e+02 Score=25.00 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=50.8
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
++|+|++.+.-.|..++.... ..+..+..+|+..... + . + ..+..++..|++..+.-..
T Consensus 6 ~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~~~~~-----e-~-~----~a~~va~~LGI~~~vvd~~~~f~~~ 70 (362)
T PRK14664 6 KRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMRVWGD-----E-P-Q----DARELAARMGIEHYVADERVPFKDT 70 (362)
T ss_pred CEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEecCcch-----h-H-H----HHHHHHHHhCCCEEEEeChHHHHHH
Confidence 799999999887777665432 3466788888743210 0 0 1 1223333344443322111
Q ss_pred -----------CC-----------h-HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 116 -----------GD-----------A-AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 116 -----------g~-----------~-~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
|. . ...+.++|++.++|.|.-|.+.+
T Consensus 71 v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 71 IVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 21 1 24678899999999999998864
No 153
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=56.37 E-value=1.1e+02 Score=24.78 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=36.1
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC---CCccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|++++. ...+....+. ...++|++++|+.+- +..-.. .|+..-.++ ++.. +|++++-+
T Consensus 202 L~~~GI~vtl--I~Dsav~~~m---~~~~vd~VivGAd~v~~nG~v~nk-iGT~~lA~~Ak~~~-vPfyV~a~ 267 (331)
T TIGR00512 202 LVQEGIPATL--ITDSMAAHLM---KHGEVDAVIVGADRIAANGDTANK-IGTYQLAVLAKHHG-VPFYVAAP 267 (331)
T ss_pred HHHCCCCEEE--EcccHHHHHh---cccCCCEEEEcccEEecCCCEeeh-hhHHHHHHHHHHhC-CCEEEecc
Confidence 3455787653 3333333333 345699999999763 222222 366555555 5556 99999855
No 154
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=55.96 E-value=96 Score=24.16 Aligned_cols=52 Identities=13% Similarity=-0.040 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC-CCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC-KTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~-~~~pVlvv~~~ 171 (179)
.-.+.+.|++.++|-+++.........+--+-.--..|+..+ + +||++...+
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~-lpi~iYn~P 137 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAAS-LPMIIYHIP 137 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC-CCEEEEeCc
Confidence 345557789999999998766443322111112235577778 6 999998544
No 155
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=55.82 E-value=98 Score=24.24 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=34.0
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCC---ccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL---IQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~---~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+.+.|++++. ...+....+ .++ +|.+++|+.+-.. .-.. .|+..-.++ ++.. +|++++-+
T Consensus 156 L~~~GI~vtl--I~Dsa~~~~---m~~--vd~VivGAD~I~~nG~v~NK-iGT~~lA~~Ak~~~-vPfyV~a~ 219 (275)
T PRK08335 156 LEFLGIEFEV--ITDAQLGLF---AKE--ATLALVGADNVTRDGYVVNK-AGTYLLALACHDNG-VPFYVAAE 219 (275)
T ss_pred HHHCCCCEEE--EeccHHHHH---HHh--CCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcC-CCEEEECc
Confidence 3445787663 233332233 233 9999999975321 2222 355554455 5556 99999854
No 156
>PRK08185 hypothetical protein; Provisional
Probab=55.66 E-value=35 Score=26.79 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlv 167 (179)
-....++++.|++.+.-+|+..+.+.-.....-+......+.+++. +||.+
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vPV~l 73 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VPFVI 73 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CCEEE
Confidence 3678999999999999999988776533222335677788888999 99765
No 157
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=55.64 E-value=24 Score=22.98 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=36.4
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.++.++..|+++++.- . ....+-+... ++|+|++|..-+-.+ ...++.+.... +||.++++..
T Consensus 20 m~~~a~~~gi~~~i~a--~-~~~e~~~~~~--~~Dvill~PQv~~~~------~~i~~~~~~~~-ipv~~I~~~~ 82 (99)
T cd05565 20 LNKGAKERGVPLEAAA--G-AYGSHYDMIP--DYDLVILAPQMASYY------DELKKDTDRLG-IKLVTTTGKQ 82 (99)
T ss_pred HHHHHHHCCCcEEEEE--e-eHHHHHHhcc--CCCEEEEcChHHHHH------HHHHHHhhhcC-CCEEEeCHHH
Confidence 3344455677766432 2 2223444444 489999997643222 23455667677 9999987543
No 158
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.90 E-value=1e+02 Score=24.31 Aligned_cols=112 Identities=5% Similarity=0.005 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--HHHHHHHHHHc
Q 030298 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--AKVICKEAERL 129 (179)
Q Consensus 54 s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~~ 129 (179)
...+++.-+......| ++.+.+.....+. ...++..+.++...+.. ...+.+-..+...+. .-.+.+.|++.
T Consensus 27 D~~~l~~lv~~li~~G--v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~--~grvpvi~Gv~~~~t~~ai~~a~~A~~~ 102 (309)
T cd00952 27 DLDETARLVERLIAAG--VDGILTMGTFGECATLTWEEKQAFVATVVETV--AGRVPVFVGATTLNTRDTIARTRALLDL 102 (309)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEECcccccchhCCHHHHHHHHHHHHHHh--CCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 3444554445444333 4444444433222 22334444444433332 223554444433344 44556789999
Q ss_pred CCcEEEEeeCCCCCcc-ccccCchhHHHHhcC-CCCcEEEEcCC
Q 030298 130 KPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHC-KTAPIIVVPGK 171 (179)
Q Consensus 130 ~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~-~~~pVlvv~~~ 171 (179)
++|-+++-........ +-++ .--+.|...+ + .||++...+
T Consensus 103 Gad~vlv~~P~y~~~~~~~l~-~yf~~va~a~~~-lPv~iYn~P 144 (309)
T cd00952 103 GADGTMLGRPMWLPLDVDTAV-QFYRDVAEAVPE-MAIAIYANP 144 (309)
T ss_pred CCCEEEECCCcCCCCCHHHHH-HHHHHHHHhCCC-CcEEEEcCc
Confidence 9998888866433322 2222 2235577777 6 999998544
No 159
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=54.60 E-value=25 Score=26.72 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
...+..++.+.+.+.|.|++|.+. .......+...+-+..+ .||++.|....
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~----~~~~~d~vv~~ik~~~~-lPvilfPg~~~ 70 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD----TGVTLDNVVALIKRVTD-LPVILFPGSPS 70 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST----HCHHHHHHHHHHHHHSS-S-EEEETSTCC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC----CccchHHHHHHHHhcCC-CCEEEeCCChh
Confidence 345666777788899999999775 22223445555555677 99999987543
No 160
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=54.45 E-value=98 Score=25.06 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHc
Q 030298 51 GPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~ 129 (179)
.+..++.+++|.++|+.. ..+++++|=..... ... ...+..++..++ +..++.++..+ .......|+..-.
T Consensus 159 ~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~--~~~-lf~~~~~eva~~--~yp~I~~~~~~-vD~~~~~Lv~~P~-- 230 (348)
T PF00180_consen 159 REGIERIARFAFEYARKRGRKKVTVVHKANVLK--STD-LFREVFQEVAKQ--EYPDIEVEHML-VDAAAMQLVKNPE-- 230 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSEEEEEESTTTST--THH-HHHHHHHHHHHH--THTTSEEEEEE-HHHHHHHHHHSGG--
T ss_pred cchhhHHHHHHHHHHHHhCCceEEEEeccchhH--HHH-HHHHHHHHHHHh--hcceeEeeeee-chhhhheeecCCc--
Confidence 366889999999999998 56899998543221 112 344444443332 34567777544 2334444444443
Q ss_pred CCcEEEEe
Q 030298 130 KPAAVVIG 137 (179)
Q Consensus 130 ~~dliV~G 137 (179)
+.|.||..
T Consensus 231 ~fdViv~~ 238 (348)
T PF00180_consen 231 QFDVIVTP 238 (348)
T ss_dssp GESEEEEE
T ss_pred ceeEEeec
Confidence 47866665
No 161
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=54.42 E-value=69 Score=22.07 Aligned_cols=42 Identities=12% Similarity=-0.026 Sum_probs=27.4
Q ss_pred HHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 98 AIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
....++..|+++. ... .-+.+.+++.+.+.++|+|.++....
T Consensus 23 v~~~lr~~G~eVi--~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~ 65 (137)
T PRK02261 23 LDRALTEAGFEVI--NLGVMTSQEEFIDAAIETDADAILVSSLYG 65 (137)
T ss_pred HHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEcCccc
Confidence 3445555666643 222 35678888888888888888876543
No 162
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=53.97 E-value=1.1e+02 Score=24.30 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=33.9
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCC---CccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRG---LIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~---~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+.+.|+++... ..+....+ ..+ +|.+++|+..-. ..-.. .|+..-.++ ++.. +||+++-+
T Consensus 167 L~~~GI~vtlI--~Dsav~~~---m~~--vd~VivGAd~v~~nG~v~nk-iGT~~~A~~Ak~~~-vPv~V~a~ 230 (310)
T PRK08535 167 LAEYGIPVTLI--VDSAVRYF---MKD--VDKVVVGADAITANGAVINK-IGTSQIALAAHEAR-VPFMVAAE 230 (310)
T ss_pred HHHCCCCEEEE--ehhHHHHH---HHh--CCEEEECccEEecCCCEEeH-HhHHHHHHHHHHhC-CCEEEecc
Confidence 34457877642 23322222 233 999999998631 12222 355444444 5556 99999844
No 163
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=53.59 E-value=64 Score=26.84 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=28.8
Q ss_pred C-ChHHHHHHHHHHc---CCcEEEEeeCCCCCccccccCc--hhHHHHhcCCCCcEEEE
Q 030298 116 G-DAAKVICKEAERL---KPAAVVIGSRGRGLIQSVLQGS--VGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 116 g-~~~~~I~~~a~~~---~~dliV~G~~~~~~~~~~~~gs--~~~~ll~~~~~~pVlvv 168 (179)
| .....|+...+.. ++|+||+++.|.+...=+.|.. +++. +..++ +||+.-
T Consensus 174 G~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~a-i~~~~-~Pvis~ 230 (438)
T PRK00286 174 GEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARA-IAASR-IPVISA 230 (438)
T ss_pred CccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHH-HHcCC-CCEEEe
Confidence 6 3556666554333 3699999977654322233333 3443 35578 887653
No 164
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=53.40 E-value=23 Score=28.22 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+....+++..+ +|+||+|.... +-+..++...+.+.| ++++ ||++.|.+-
T Consensus 163 ~~~~~~l~AI~~--ADlIvlgPGSlyTSI~P~Llv~gi~eAi-~~s~-a~kV~V~ni 215 (309)
T cd07044 163 SPSREVLEAIEK--ADNIVIGPGSLYTSILPNISVPGIREAL-KKTX-AKKVYVSNI 215 (309)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhhhhcCcHhHHHHH-HhcC-CCeEEECCC
Confidence 456788888888 99999997642 223445556666644 5688 999988775
No 165
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=53.26 E-value=89 Score=22.99 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHcCCcEEEEe----eCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 117 DAAKVICKEAERLKPAAVVIG----SRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G----~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+-.+..+..+....+|+++|. ....++. ...+++.+..|+++++++-..
T Consensus 34 ~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 34 ETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred CCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEECC
Confidence 334444566777789999999 3332221 366777766666898888543
No 166
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=53.09 E-value=1.1e+02 Score=24.07 Aligned_cols=83 Identities=12% Similarity=-0.046 Sum_probs=51.4
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----C
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----G 116 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----g 116 (179)
..+|.|-+.++.+...++-.+.+-. ..++++.++-...+ + . .+..+..|+++.+.-.. .
T Consensus 93 ~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~visn~~-------~-~--------~~~A~~~gIp~~~~~~~~~~~~ 155 (289)
T PRK13010 93 RPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGIISNHP-------D-L--------QPLAVQHDIPFHHLPVTPDTKA 155 (289)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEEEECCh-------h-H--------HHHHHHcCCCEEEeCCCccccc
Confidence 4689999999888888777774433 34555555543221 0 0 12234456776532111 1
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+....+++..+++++|++|+....
T Consensus 156 ~~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 156 QQEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred chHHHHHHHHHHhCCCEEEEehhh
Confidence 235678999999999999999654
No 167
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=52.67 E-value=1.1e+02 Score=23.99 Aligned_cols=84 Identities=11% Similarity=-0.065 Sum_probs=50.6
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-C--
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-G-- 116 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g-- 116 (179)
...+|.|-+.++.....++-.+..-. ..++++.++....++ .....+..|+++.+.... .
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~-~~~~~i~~visn~~~----------------~~~lA~~~gIp~~~~~~~~~~~ 150 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIG-ELPMDIVGVVSNHPD----------------LEPLAAWHGIPFHHFPITPDTK 150 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcC-CCCcEEEEEEECCcc----------------HHHHHHHhCCCEEEeCCCcCch
Confidence 34689999988877777766664433 345666665543221 111134456776532111 1
Q ss_pred -ChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 117 -DAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 117 -~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+....+.+..++.++|++|+....
T Consensus 151 ~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK13011 151 PQQEAQVLDVVEESGAELVVLARYM 175 (286)
T ss_pred hhhHHHHHHHHHHhCcCEEEEeChh
Confidence 234568888899999999998653
No 168
>PRK05920 aromatic acid decarboxylase; Validated
Probab=52.51 E-value=34 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
+.++|++++.++-.+..+++....|.+. |.+++++.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~-g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA-DYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 3489999999999888888877666554 77766664
No 169
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=52.47 E-value=1.2e+02 Score=24.08 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=34.0
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCC---CccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRG---LIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~---~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+.+.|++++.. ..+....+ ..+ +|.+++|+.+-- ..-.. .|+..-.++ ++.. +||+++-+
T Consensus 162 L~~~gI~vtlI--~Dsa~~~~---m~~--vd~VivGad~v~~nG~v~nk-iGT~~lA~~Ak~~~-vPv~V~a~ 225 (301)
T TIGR00511 162 LRDYGIPVTLI--VDSAVRYF---MKE--VDHVVVGADAITANGALINK-IGTSQLALAAREAR-VPFMVAAE 225 (301)
T ss_pred HHHCCCCEEEE--ehhHHHHH---HHh--CCEEEECccEEecCCCEEEH-HhHHHHHHHHHHhC-CCEEEEcc
Confidence 34457877642 22322222 334 999999998632 22222 355444444 5556 99999844
No 170
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=52.41 E-value=44 Score=27.72 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=11.9
Q ss_pred CCCCcEEEEcCCCCCC
Q 030298 160 CKTAPIIVVPGKEAGD 175 (179)
Q Consensus 160 ~~~~pVlvv~~~~~~~ 175 (179)
.. +||++++..+...
T Consensus 109 ~~-iPVf~I~GNHD~p 123 (405)
T TIGR00583 109 VA-IPVFSIHGNHDDP 123 (405)
T ss_pred CC-CCEEEEcCCCCCc
Confidence 47 9999998876654
No 171
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=52.22 E-value=38 Score=27.00 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+....++..++ +|+||+|.... +-...++...+.+.| ++++ ||++.|.+-.
T Consensus 161 ~a~~~al~AI~~--ADlIvlgPGSlyTSIiPnLlv~gI~eAI-~~s~-a~kV~v~N~~ 214 (310)
T TIGR01826 161 PALREAVEAIRE--ADLIILGPGSLYTSIIPNLLVPEIAEAL-RESK-APKVYVCNLM 214 (310)
T ss_pred CCCHHHHHHHHh--CCEEEECCCcCHHHhchhcCchhHHHHH-HhCC-CCEEEEeCCC
Confidence 456788888888 99999997642 234445566666655 6688 9999887753
No 172
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.80 E-value=49 Score=26.01 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
-+...++++.|++.+.-+|+.-+.+.-.... -.+......+.+++. +||.+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~-VPV~l 79 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH-HPLAL 79 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 4789999999999999999988765322222 134567888899999 99875
No 173
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=51.39 E-value=34 Score=27.10 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC-CCc-cccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR-GLI-QSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~-~~~-~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+....++..++ +|+||+|.... +.+ .-++...+.+ .++.++ +|++.|.+--
T Consensus 172 ~~~p~~l~AI~~--AD~IiigPgs~~TSI~P~L~v~gi~~-Ai~~s~-a~kV~V~ni~ 225 (300)
T PF01933_consen 172 KANPEALEAIEE--ADLIIIGPGSLYTSIIPNLLVPGIRE-AIRESK-APKVYVSNIM 225 (300)
T ss_dssp -B-HHHHHHHHH---SEEEE-SS-CCCCCHHHHTSHHHHH-HHHHSS-SEEEEE-SSB
T ss_pred CCCHHHHHHHHh--CCEEEEcCCCchhhhcccccchhHHH-HHHhCC-CCEEEEcCCC
Confidence 357788888888 99999997642 222 2333445544 567788 9999887643
No 174
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=51.03 E-value=1.1e+02 Score=23.25 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=50.3
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCE-EEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC---Ch
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADT-IHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG---DA 118 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~-l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g---~~ 118 (179)
++++=+.+.+.|..|+-+|.+ .|-. ..++++.+......+.....-.+ .....+..|+++......| +-
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~----~G~eV~~Ll~~~p~~~dS~m~H~~n~~~---~~~~Ae~~gi~l~~~~~~g~~e~e 74 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE----EGHEVVYLLTVKPENGDSYMFHTPNLEL---AELQAEAMGIPLVTFDTSGEEERE 74 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH----cCCeeEEEEEEecCCCCeeeeeccchHH---HHHHHHhcCCceEEEecCccchhh
Confidence 355666788888776666644 3444 44555555444222221111111 2222333456655444445 46
Q ss_pred HHHHHHHHHHcCCcEEEEeeC
Q 030298 119 AKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.+....+..++|-|+.|+-
T Consensus 75 ve~L~~~l~~l~~d~iv~GaI 95 (223)
T COG2102 75 VEELKEALRRLKVDGIVAGAI 95 (223)
T ss_pred HHHHHHHHHhCcccEEEEchh
Confidence 778888888888999999974
No 175
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=50.25 E-value=1.6e+02 Score=25.01 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=61.8
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh----HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI----VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICK 124 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~ 124 (179)
|..-....++.+|+..+... +.++++.++..... ......+.+..+ ++.+...|++ ..+..|++.+.+.+
T Consensus 11 DLR~~DN~aL~~A~~~~~~~---~~~vfi~~~~~~~~~~~~~~~Fl~~sL~~L-~~~L~~~gi~--L~v~~~~~~~~l~~ 84 (461)
T COG0415 11 DLRLTDNAALAAACQSGQPV---IIAVFILDPEQLGHASPRHAAFLLQSLQAL-QQSLAELGIP--LLVREGDPEQVLPE 84 (461)
T ss_pred ccccCChHHHHHHHhcCCCc---eEEEEEechhhccccCHHHHHHHHHHHHHH-HHHHHHcCCc--eEEEeCCHHHHHHH
Confidence 33344556677776555432 35666666543321 122333444443 3344555555 46788999999999
Q ss_pred HHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 125 EAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
++++.+++-|+-...- +...+. ......+-+...+ +-+..+
T Consensus 85 ~~~~~~~~~v~~n~~~-~~~~~~-rD~al~~~l~~~g-i~~~~~ 125 (461)
T COG0415 85 LAKQLAATTVFWNRDY-EEWERQ-RDAALAQPLTEVG-IAVHSF 125 (461)
T ss_pred HHHHhCcceEEeeeee-chhHHH-HHHHHHHHHHhcC-ceEEEe
Confidence 9999998888777553 333222 1223344445455 555443
No 176
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=49.98 E-value=55 Score=19.62 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=19.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTI 72 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l 72 (179)
++|.++.|.+.....+...+.......+..+
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~ 74 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRV 74 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEE
Confidence 7777777777766666655555555444333
No 177
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=49.76 E-value=1.4e+02 Score=24.19 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=7.6
Q ss_pred HHHHHHHHHcCCcEEE
Q 030298 120 KVICKEAERLKPAAVV 135 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV 135 (179)
+.+.+.+++.++|.||
T Consensus 74 ~~~~~~~~~~~~d~II 89 (366)
T PRK09423 74 DRLVAIAEENGCDVVI 89 (366)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 3444445555555444
No 178
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=49.71 E-value=89 Score=27.23 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHhhhcCceeEEEEecC--Ch--HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 100 EAMDVAMVRTKARIVEG--DA--AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~g--~~--~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..++..|+++++.+..- .+ ...+++.++..+++.+|.++.....+. --+...+. +||+-||.+.
T Consensus 431 ~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~--------~~~a~~t~-~pvi~vp~~~ 498 (577)
T PLN02948 431 EILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLP--------GMVASMTP-LPVIGVPVKT 498 (577)
T ss_pred HHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccch--------HHHhhccC-CCEEEcCCCC
Confidence 34555678888777653 33 344555667788999888877544433 33556678 9999998753
No 179
>PRK06801 hypothetical protein; Provisional
Probab=49.23 E-value=70 Score=25.19 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
-....++++.|++.+.-+|+..+.+...... ..+......+.++++ +||.+
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~-vpV~l 79 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD-IPVVL 79 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 3678899999999999999988776543322 335677888888998 99765
No 180
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=49.19 E-value=62 Score=20.17 Aligned_cols=61 Identities=11% Similarity=-0.088 Sum_probs=34.9
Q ss_pred hcCceeEEEEe-cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 104 VAMVRTKARIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 104 ~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
..|+++...+. .++-...+.+..+..++|+||--....+....- -|-..++.+-... +|++
T Consensus 28 ~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~~~~~~~~-d~~~iRr~A~~~~-Ip~~ 89 (90)
T smart00851 28 EAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYPLGAQPHE-DGKALRRAAENID-IPGA 89 (90)
T ss_pred HCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCcCcceecc-CcHHHHHHHHHcC-CCee
Confidence 35677653221 222234699999999999999976532221111 2444555665566 6653
No 181
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=49.01 E-value=1.2e+02 Score=23.45 Aligned_cols=89 Identities=15% Similarity=0.024 Sum_probs=47.3
Q ss_pred EecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH---H
Q 030298 47 AVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI---C 123 (179)
Q Consensus 47 ~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I---~ 123 (179)
+..++..+..+...|..+++ .+.++.++.+... .....+.+..+ .+..++.+.......++...+ +
T Consensus 79 G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~------r~~a~~ql~~~----~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTF------RAAAIEQLEEW----AKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCC------CHHHHHHHHHH----HHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 44455666777888877654 4667777754321 11112233322 222233322111123554433 3
Q ss_pred HHHHHcCCcEEEEeeCCCCCccc
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQS 146 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~ 146 (179)
..+...++|+|++.+.++.....
T Consensus 148 ~~~~~~~~D~ViIDT~G~~~~d~ 170 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGRLQNKV 170 (272)
T ss_pred HHHHHCCCCEEEEeCCCCCcchH
Confidence 45567889999999998766433
No 182
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=48.92 E-value=61 Score=24.49 Aligned_cols=74 Identities=8% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhhcCceeEEEEec-----CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 92 GLMEKLAIEAMDVAMVRTKARIVE-----GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~-----g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
..++. ....+...|.+|.+.-.. ++..+.|..+.++++++-|++-..+.-++.+ ....+..... |++-
T Consensus 49 saMRh-fa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~-----~l~~~~~~~~-i~~~ 121 (224)
T PF04244_consen 49 SAMRH-FADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQ-----RLESLAQQLG-IPLE 121 (224)
T ss_dssp HHHHH-HHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHH-----HHHH----SS-S-EE
T ss_pred HHHHH-HHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHH-----HHHhhhcccC-CceE
Confidence 34444 344456678888876655 2557889899999999999888665433333 2345666677 9998
Q ss_pred EEcCCC
Q 030298 167 VVPGKE 172 (179)
Q Consensus 167 vv~~~~ 172 (179)
+++...
T Consensus 122 ~~~~~~ 127 (224)
T PF04244_consen 122 VLEDPH 127 (224)
T ss_dssp EE--TT
T ss_pred EeCCCC
Confidence 887653
No 183
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=48.56 E-value=71 Score=25.41 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC-CC-ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR-GL-IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~-~~-~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+....++..++ +|+||+|.... +. ..-++...+.+ .+++++ .|++.|-+
T Consensus 172 ~~~p~vl~AI~~--AD~IVlGPgsp~TSI~P~LlVpgI~e-AL~~s~-A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIED--ADLVIIGPSNPVTSIGPILALPGIRE-ALRDKK-APVVAVSP 223 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhccchhHHH-HHHhCC-CCEEEEcC
Confidence 467788888888 99999997752 22 33344455544 556788 88887754
No 184
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=47.99 E-value=69 Score=26.00 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCc-ccc---------------ccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLI-QSV---------------LQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~-~~~---------------~~gs~~~~ll~~~~~~pVlv 167 (179)
-+...++++.|++.+..+|+.-+.+.... ... .+......+.++++ +||.+
T Consensus 26 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~-VPVal 92 (345)
T cd00946 26 SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYG-VPVVL 92 (345)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCC-CCEEE
Confidence 47899999999999999999887753221 111 34566778888999 99765
No 185
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=47.80 E-value=1.6e+02 Score=24.27 Aligned_cols=39 Identities=23% Similarity=0.090 Sum_probs=30.0
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
|-..-.++++.+.+.-.|..+..++.. .|.++..+|+..
T Consensus 172 P~g~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 172 PVGTSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred ccCCCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 456668999999999888877665544 477899999854
No 186
>PRK08349 hypothetical protein; Validated
Probab=47.77 E-value=1.1e+02 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=25.3
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
++++++.+...|..++..+.. .|.+++.+|+..
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred cEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 578999998888887754433 477899999875
No 187
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=47.69 E-value=1.7e+02 Score=24.60 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=48.1
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--- 120 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--- 120 (179)
++++..++-.+..+...|..+.+ .|.++.++.+.... . ...+.+..+ .+..++++.......++..
T Consensus 99 ~lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R---~---aa~eQL~~l----a~~~gvp~~~~~~~~d~~~i~~ 167 (437)
T PRK00771 99 MLVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYR---P---AAYDQLKQL----AEKIGVPFYGDPDNKDAVEIAK 167 (437)
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCC---H---HHHHHHHHH----HHHcCCcEEecCCccCHHHHHH
Confidence 44555677777777787866654 46677776653321 1 112222222 2333444322111234443
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccc
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVL 148 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~ 148 (179)
..++.+.. .|+||+.+.++......+
T Consensus 168 ~al~~~~~--~DvVIIDTAGr~~~d~~l 193 (437)
T PRK00771 168 EGLEKFKK--ADVIIVDTAGRHALEEDL 193 (437)
T ss_pred HHHHHhhc--CCEEEEECCCcccchHHH
Confidence 33334444 699999999877654433
No 188
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=47.46 E-value=74 Score=23.59 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=28.9
Q ss_pred HHhhhcCceeEEEEecCChHHHHHHHHHHc---CCcEEEEeeCC
Q 030298 100 EAMDVAMVRTKARIVEGDAAKVICKEAERL---KPAAVVIGSRG 140 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~---~~dliV~G~~~ 140 (179)
+.++..|+.-.+.+..|+..+.|-.+..+. .+|+|.+.+..
T Consensus 88 ~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 88 ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG
T ss_pred HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc
Confidence 334445555456677899998888887755 59999999874
No 189
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=47.31 E-value=84 Score=24.64 Aligned_cols=51 Identities=20% Similarity=0.121 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
-....++++.|++.+.-+|+..+.+.-.... .+++......++++. +||.+
T Consensus 28 ~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~-vpv~l 79 (281)
T PRK06806 28 MEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAK-VPVAV 79 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCC-CCEEE
Confidence 3678899999999998888887765432222 234566777888888 99765
No 190
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=47.23 E-value=1.3e+02 Score=23.30 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=37.6
Q ss_pred HhhhcCceeEEEEecCChHHHHHHH---HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 101 AMDVAMVRTKARIVEGDAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+...|+++......||-.+.|.+. +.+. +|+||.. .|-++...- -|.+.+++... .|+.
T Consensus 29 ~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~t-GGLGPT~DD---iT~e~vAka~g-~~lv 91 (255)
T COG1058 29 ELTELGVDLARITTVGDNPDRIVEALREASER-ADVVITT-GGLGPTHDD---LTAEAVAKALG-RPLV 91 (255)
T ss_pred HHHhcCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEEC-CCcCCCccH---hHHHHHHHHhC-CCcc
Confidence 3455689999888888765555544 4454 9999887 445554432 24555555555 5543
No 191
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=47.19 E-value=2.1e+02 Score=27.55 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=45.8
Q ss_pred HHHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 96 KLAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+..-.++..|.++. -+. .-+.+.|++.++++++|+|.|+.--......+ ..+.+.+-+....+||++--
T Consensus 750 nIV~~~L~~~GfeVI--dLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m--~~vi~~L~~~g~~v~v~vGG 820 (1178)
T TIGR02082 750 NIVGVVLSCNGYEVV--DLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEM--KEVAEEMNRRGITIPLLIGG 820 (1178)
T ss_pred HHHHHHHHhCCCEEE--ECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHH--HHHHHHHHhcCCCceEEEec
Confidence 445556666676643 233 35799999999999999999987644444433 45666665554337777643
No 192
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=47.11 E-value=1.4e+02 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHhhhcCceeEEEEecCC-hHHHHHHHHHHcCCcEEEEeeC
Q 030298 100 EAMDVAMVRTKARIVEGD-AAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~ 139 (179)
..++..+.+...+..... -+..+++.+...++|.||.+..
T Consensus 27 ~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 27 ELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred HHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC
Confidence 334555666666665543 5556666665557777777743
No 193
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=47.11 E-value=1e+02 Score=21.79 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
..+.|.+.+++.++|+|++|....
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcc
Confidence 366788888888999999998754
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=47.03 E-value=1.5e+02 Score=23.88 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=56.5
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--- 120 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--- 120 (179)
++++..++-.+..+...|..+. ..+.++.++... .. .....+.+.. .....++.+......+++..
T Consensus 144 ~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~D---t~---R~~a~eqL~~----~a~~lgv~v~~~~~g~dp~~v~~ 212 (336)
T PRK14974 144 VFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGD---TF---RAGAIEQLEE----HAERLGVKVIKHKYGADPAAVAY 212 (336)
T ss_pred EEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCC---cC---cHHHHHHHHH----HHHHcCCceecccCCCCHHHHHH
Confidence 4455566666666666665444 345555554321 11 1111122222 22334555543222346554
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC-CCCcEEEEcC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC-KTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~-~~~pVlvv~~ 170 (179)
..+++++..++|+|++.+.++......++... .++.+.. ++.-+||+..
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL-~~i~~~~~pd~~iLVl~a 262 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGRMHTDANLMDEL-KKIVRVTKPDLVIFVGDA 262 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCccCCcHHHHHHH-HHHHHhhCCceEEEeecc
Confidence 33456677789999999998765444333333 3333322 3144455543
No 195
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.87 E-value=37 Score=25.95 Aligned_cols=9 Identities=44% Similarity=0.652 Sum_probs=4.0
Q ss_pred eEEEEecCC
Q 030298 109 TKARIVEGD 117 (179)
Q Consensus 109 ~~~~~~~g~ 117 (179)
+...+..||
T Consensus 40 ~D~lli~GD 48 (253)
T TIGR00619 40 IDALLVAGD 48 (253)
T ss_pred CCEEEECCc
Confidence 334454443
No 196
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=46.78 E-value=51 Score=26.25 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.+....++..++ +|+||+|.... +-...++...+.+.| ++++ ||++.|.+--.
T Consensus 164 ~~~~~a~~AI~~--AD~Iv~gPGSlyTSI~P~Llv~gI~eAi-~~s~-a~kV~v~N~~~ 218 (308)
T cd07187 164 KANPEALEAIEE--ADLIVYGPGSLYTSILPNLLVKGIAEAI-RASK-APKVYICNLMT 218 (308)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHHhhhhcCchhHHHHH-HhCC-CCEEEEecCCC
Confidence 456788888888 99999997642 223445566666655 6788 99988866433
No 197
>PF13362 Toprim_3: Toprim domain
Probab=46.40 E-value=73 Score=20.04 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=26.8
Q ss_pred CCCeEEEEecCCcc--hHHHHHHHHHHhccCCCEEEEEEE
Q 030298 40 RGRDILIAVDHGPN--SKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~--s~~al~~a~~la~~~~~~l~~v~v 77 (179)
..++|+|+.|.+.. ...+...+.+.+...+..+.++..
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 55889999998877 666666666666666666665543
No 198
>PHA02546 47 endonuclease subunit; Provisional
Probab=46.23 E-value=68 Score=25.74 Aligned_cols=20 Identities=5% Similarity=-0.173 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCcEEEEee
Q 030298 119 AKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~ 138 (179)
.+.+++++++.++|+|+++-
T Consensus 28 l~~ii~~a~~~~vD~VliaG 47 (340)
T PHA02546 28 IKQAIEYSKAHGITTWIQLG 47 (340)
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 44555555566666666553
No 199
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=45.53 E-value=50 Score=21.15 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=36.3
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
.++.++..|+++++ ...+..+ +-... .++|+|+++..-+..+. ..++.+.... +||.++++....
T Consensus 19 i~~~~~~~~~~~~v--~~~~~~~-~~~~~--~~~Diil~~Pqv~~~~~------~i~~~~~~~~-~pv~~I~~~~Y~ 83 (96)
T cd05564 19 MKKAAEKRGIDAEI--EAVPESE-LEEYI--DDADVVLLGPQVRYMLD------EVKKKAAEYG-IPVAVIDMMDYG 83 (96)
T ss_pred HHHHHHHCCCceEE--EEecHHH-HHHhc--CCCCEEEEChhHHHHHH------HHHHHhccCC-CcEEEcChHhcc
Confidence 34445556676553 3333322 22333 45999999966332222 1233445567 999999887654
No 200
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=45.25 E-value=86 Score=20.53 Aligned_cols=101 Identities=11% Similarity=-0.043 Sum_probs=55.5
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCC-hHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD-AAKVI 122 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~I 122 (179)
|++-+++.. -..++.+|..+.. .|-++.. .+ . ..+.++..|++++....... -...|
T Consensus 2 i~isv~d~~-K~~~~~~a~~l~~-~G~~i~A---T~-----g------------Ta~~L~~~Gi~~~~v~~~~~~g~~~i 59 (112)
T cd00532 2 VFLSVSDHV-KAMLVDLAPKLSS-DGFPLFA---TG-----G------------TSRVLADAGIPVRAVSKRHEDGEPTV 59 (112)
T ss_pred EEEEEEccc-HHHHHHHHHHHHH-CCCEEEE---Cc-----H------------HHHHHHHcCCceEEEEecCCCCCcHH
Confidence 566665553 3566777777663 3444321 11 0 11112335777765433211 23578
Q ss_pred HHHHHH-cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEE
Q 030298 123 CKEAER-LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 123 ~~~a~~-~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlv 167 (179)
.+..++ .++|+||--..+.......--|....+..-... +|++-
T Consensus 60 ~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~-Ip~~T 104 (112)
T cd00532 60 DAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYK-IPVTT 104 (112)
T ss_pred HHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcC-CCEEE
Confidence 899999 999999987654331111122455566666667 88764
No 201
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=44.95 E-value=77 Score=19.85 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
....++..+.+.+|+++++..-.+ ... -.+.++|-+..+++|++++-...
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~-~~~---~~~~~~i~~~~~~~~ii~~t~~~ 81 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPD-GDG---LELLEQIRQINPSIPIIVVTDED 81 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSS-SBH---HHHHHHHHHHTTTSEEEEEESST
T ss_pred HHHHHHHhcccCceEEEEEeeecc-ccc---cccccccccccccccEEEecCCC
Confidence 445556668888999999976433 221 24566666655449998886543
No 202
>PRK11914 diacylglycerol kinase; Reviewed
Probab=44.91 E-value=1.2e+02 Score=23.74 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=47.5
Q ss_pred CCCeEEEEecCCcc---hHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC
Q 030298 40 RGRDILIAVDHGPN---SKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG 116 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~---s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g 116 (179)
.++++++-+++... +....+...+.....+.++.++.... . ....+..+ +... .+.+. +.+..|
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~---~----~~~~~~a~----~~~~-~~~d~-vvv~GG 73 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD---A----HDARHLVA----AALA-KGTDA-LVVVGG 73 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC---H----HHHHHHHH----HHHh-cCCCE-EEEECC
Confidence 34788888886643 34455556665555566655532211 1 11122222 2222 22332 334456
Q ss_pred C-hHHHHHHHHHHcCCcEEEEeeCCCCCccccc
Q 030298 117 D-AAKVICKEAERLKPAAVVIGSRGRGLIQSVL 148 (179)
Q Consensus 117 ~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~ 148 (179)
| ....++......++-+-|+.....+-+.+.+
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~l 106 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPAGTGNDHAREF 106 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeCCCcchhHHHc
Confidence 5 4455555544445667777766555555543
No 203
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=44.77 E-value=1.7e+02 Score=23.67 Aligned_cols=96 Identities=13% Similarity=-0.022 Sum_probs=52.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh---HHHHHHHHHHHHHHHHhhhcCceeEEEEe----
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI---VYDMSQGLMEKLAIEAMDVAMVRTKARIV---- 114 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---- 114 (179)
++|+|++.+...|..++..+.+ .+..+..+|+........ ......+..+ .++..++..+++..+.-.
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~-~a~~~a~~LgIp~~vvd~~~~f 75 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKLWDDDDETGKGGCCAEEDIA-DARRVADKLGIPHYVVDFEKEF 75 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeCCCcccccccCCcCcHHHHH-HHHHHHHHcCCcEEEEeCHHHH
Confidence 3799999999888776654433 356788888864321100 0000011111 123333444454432211
Q ss_pred -------------cC----------C-h-HHHHHHHHHHcCCcEEEEeeCCCC
Q 030298 115 -------------EG----------D-A-AKVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 115 -------------~g----------~-~-~~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
.| . . ...+.++|++.++|.|+-|.+.+.
T Consensus 76 ~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d 128 (346)
T PRK00143 76 WDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARI 128 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccc
Confidence 01 1 1 356778899999999999987654
No 204
>PRK06247 pyruvate kinase; Provisional
Probab=44.45 E-value=77 Score=26.96 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+..+.|...++.+||+-+.. |+++..+.+.-|.||++.+-+..
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s---------G~ta~~isk~RP~~pI~a~t~~~ 402 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS---------GDTALRAARERPPLPILALTPNP 402 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 45566677888899999887663 78888888776669999987654
No 205
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=44.34 E-value=83 Score=24.74 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
-+...++++.|++.+..+|+..+.+.-.... -.+......++++++ +||.+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~-VPVal 79 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS-VPVAL 79 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 3678999999999999999988765322221 224566778888999 99876
No 206
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=43.98 E-value=86 Score=24.65 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
-+...++++.|++.+.-+|+.-+.+.-.... ..+......+++++. +||.+
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~-VPVal 77 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN-MPLAL 77 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 3789999999999999999988765432222 224567888999999 99876
No 207
>PRK06850 hypothetical protein; Provisional
Probab=43.88 E-value=2.1e+02 Score=24.62 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=38.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccC-----CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRL-----ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARI 113 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~-----~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 113 (179)
..++|++.+.+.|..++..+....... ..++++++....-..+.......+.++.+ +...+..++++.+++
T Consensus 35 ~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i-~~~a~~~glpi~~~~ 110 (507)
T PRK06850 35 RPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERI-NEAAKKQGLPITPHK 110 (507)
T ss_pred CCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHH-HHHHHHcCCceEEEe
Confidence 457899999999999888776543321 23567776643322333333333333332 222333455554433
No 208
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=43.50 E-value=84 Score=24.71 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
-+...++++.|++.+..+|+.-+.+.-.... -++......+.++++ +||.+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~-VPVal 79 (284)
T PRK12737 28 LETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN-IPLAL 79 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 3789999999999999999987664322111 224566788888999 99875
No 209
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=43.21 E-value=2e+02 Score=24.25 Aligned_cols=87 Identities=8% Similarity=-0.041 Sum_probs=51.7
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------hHHHHHHHHHHHHHHHHhhhcCceeEEEEe--cCChHH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------IVYDMSQGLMEKLAIEAMDVAMVRTKARIV--EGDAAK 120 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~g~~~~ 120 (179)
|..-....+|..|+..+ +..+..++|.++.... .......+.+.++ ++.+...|....+..- .|++.+
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL~~L-~~~L~~~g~~L~v~~g~~~g~~~~ 86 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAAHDMAPRQAAFINAQLNAL-QIALAEKGIPLLFHEVDDFAASVE 86 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHH-HHHHHHcCCceEEEecCCcCCHHH
Confidence 44445566777665433 2368899998763211 1112233444443 3334555655533221 367999
Q ss_pred HHHHHHHHcCCcEEEEeeC
Q 030298 121 VICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~ 139 (179)
.|.+++++.+++-|+.-..
T Consensus 87 vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 87 WLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHcCCCEEEEecc
Confidence 9999999999999998754
No 210
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=43.00 E-value=33 Score=24.14 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc-------CCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH-------CKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~-------~~~~pVlvv~~~ 171 (179)
.+.|.++..++++|+|++|... .-.+.+...+ ..++.. .+ +||.+|...
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~--~~s~~l~~~v-~~~v~~~~~~~~~~~-i~V~~v~~~ 107 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNS--RESRKLYDDV-RDIVEELDEDEQMPP-IPVVIVDDE 107 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SS--THHHHHHHHH-HHHHHHTTB-TTS-B---EEE---T
T ss_pred HHHHHHHHHHcCCeEEEEcCCC--hhHHHHHHHH-HHHHHHhhhcccCCC-ceEEEECcH
Confidence 4566677888888888885432 2222232222 223322 24 888887654
No 211
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=42.76 E-value=99 Score=20.59 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=29.9
Q ss_pred HHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 97 LAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.....++..|+++. ... ..+.+.+++.+.+.++|.|+++...
T Consensus 18 ~~~~~l~~~G~~vi--~lG~~vp~e~~~~~a~~~~~d~V~iS~~~ 60 (122)
T cd02071 18 VIARALRDAGFEVI--YTGLRQTPEEIVEAAIQEDVDVIGLSSLS 60 (122)
T ss_pred HHHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEcccc
Confidence 34455666676654 233 3678899999999999999998764
No 212
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=42.56 E-value=77 Score=19.16 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=30.5
Q ss_pred ccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
+..||+|.+.-....+...|++-|+.-|...=..+..+-|.+.
T Consensus 3 ~hvYK~IelvGtSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~~~ 45 (71)
T COG3360 3 HHVYKKIELVGTSPTSIDAAIANAIARAADTLDNLDWFEVVET 45 (71)
T ss_pred cceEEEEEEEecCCccHHHHHHHHHHHHHhhhhcceEEEEEee
Confidence 3467888876666666778888888888766556666666653
No 213
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=42.55 E-value=82 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=23.2
Q ss_pred cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|++|+...+. .......+...-.++.... +||++|-.
T Consensus 98 ~~~D~viid~~g~-~~~~~~~~~~~~dl~~~~~-~~vilV~~ 137 (166)
T TIGR00347 98 QKYDFVLVEGAGG-LCVPITEEYTTADLIKLLQ-LPVILVVR 137 (166)
T ss_pred hcCCEEEEEcCCc-cccCCCCCCcHHHHHHHhC-CCEEEEEC
Confidence 4588888877652 2222222323344777777 88877743
No 214
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=42.33 E-value=70 Score=25.69 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+....++..++ +|+||+|.... +-+.-+++....+.|.+ +. .|++.+.+-.
T Consensus 178 ~a~~eaveAI~~--AD~IviGPgSl~TSIlP~Lllp~I~eaLr~-~~-ap~i~v~n~~ 231 (323)
T COG0391 178 SAAPEAVEAIKE--ADLIVIGPGSLFTSILPILLLPGIAEALRE-TV-APIVYVCNLM 231 (323)
T ss_pred CCCHHHHHHHHh--CCEEEEcCCccHhhhchhhchhHHHHHHHh-CC-CCEEEeccCC
Confidence 456788888888 99999997652 23444556777775555 88 8998876543
No 215
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=42.27 E-value=1.1e+02 Score=24.83 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=41.4
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKP 131 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 131 (179)
..+++.+++|.++|...+.+++++|=..... ......+..++.. .+.+++.++... .......++.- -.++
T Consensus 163 ~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk---t~glf~~~~~eva---~~yP~I~~~~~~-vDa~~~~Lv~~--P~~f 233 (349)
T TIGR00169 163 PEIERIARVAFEMARKRRKKVTSVDKANVLE---SSRLWRKTVEEIA---KEYPDVELEHQY-IDNAAMQLVKS--PTQF 233 (349)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcccc---hhHHHHHHHHHHH---hhCCCceEEeee-HHHHHHHHHhC--ccCc
Confidence 5678899999999988777888887544322 2223333333322 123456655433 22223333332 2447
Q ss_pred cEEEEe
Q 030298 132 AAVVIG 137 (179)
Q Consensus 132 dliV~G 137 (179)
|.||..
T Consensus 234 DViv~~ 239 (349)
T TIGR00169 234 DVVVTG 239 (349)
T ss_pred eEEEEc
Confidence 755554
No 216
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=42.24 E-value=89 Score=21.93 Aligned_cols=18 Identities=0% Similarity=-0.014 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHcCCcEEE
Q 030298 118 AAKVICKEAERLKPAAVV 135 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV 135 (179)
....+++.+++.+.+-|.
T Consensus 79 l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 79 LVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHHHHHhCCcceE
Confidence 456666666666655554
No 217
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=42.23 E-value=1.6e+02 Score=23.47 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=5.4
Q ss_pred CCcEEEEeeC
Q 030298 130 KPAAVVIGSR 139 (179)
Q Consensus 130 ~~dliV~G~~ 139 (179)
+..+|.+.+.
T Consensus 102 ~~p~i~iPTT 111 (339)
T cd08173 102 GIPFISVPTA 111 (339)
T ss_pred CCCEEEecCc
Confidence 4555555544
No 218
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=42.00 E-value=1.7e+02 Score=23.01 Aligned_cols=112 Identities=13% Similarity=0.028 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+...... ....++..+.++...+.. ...+.+-..+. ++..+ .+.+.+++
T Consensus 25 iD~~~l~~li~~l~~~Gv--~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~--~~~~pvi~gv~-~~t~~~i~~~~~a~~ 99 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGA--AALFAAGGTGEFFSLTPDEYSQVVRAAVETT--AGRVPVIAGAG-GGTAQAIEYAQAAER 99 (303)
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECcCCcCcccCCHHHHHHHHHHHHHHh--CCCCcEEEecC-CCHHHHHHHHHHHHH
Confidence 345556655565554444 33333333222 222333444444433332 12344443332 24433 45577889
Q ss_pred cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++..........--+-.--..|...++ .||++...
T Consensus 100 ~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~-lpi~lYn~ 140 (303)
T PRK03620 100 AGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD-LGVIVYNR 140 (303)
T ss_pred hCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEcC
Confidence 999999997764433222111223355777888 99999864
No 219
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.87 E-value=1.4e+02 Score=21.90 Aligned_cols=60 Identities=3% Similarity=0.021 Sum_probs=39.8
Q ss_pred HHHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc
Q 030298 96 KLAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH 159 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~ 159 (179)
......++..|.++. ... +-+.+.+++.+++.++|+|.++.........+ ....+.+-+.
T Consensus 102 ~~v~~~l~~~G~~vi--~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~--~~~i~~l~~~ 162 (197)
T TIGR02370 102 NIVVTMLRANGFDVI--DLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ--KDINDKLKEE 162 (197)
T ss_pred HHHHHHHHhCCcEEE--ECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHH--HHHHHHHHHc
Confidence 344556666777654 233 35899999999999999999998754444432 4455544443
No 220
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=41.81 E-value=1.8e+02 Score=23.28 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.5
Q ss_pred HHHHHHHHcCCcEEE
Q 030298 121 VICKEAERLKPAAVV 135 (179)
Q Consensus 121 ~I~~~a~~~~~dliV 135 (179)
.+.+.+++.++|.||
T Consensus 69 ~~~~~~~~~~~d~ii 83 (345)
T cd08171 69 RLKKNPAVQEADMIF 83 (345)
T ss_pred HHHHHHhhcCCCEEE
Confidence 444444555555554
No 221
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=41.50 E-value=28 Score=28.97 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+-.+.|+++|+++++||+|+|...
T Consensus 50 ~~~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 50 TDHEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred cCHHHHHHHHHHcCCCEEEECCcH
Confidence 457899999999999999999753
No 222
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.37 E-value=41 Score=28.01 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.|+..+++.++|++|.|.--.-+-....-|.++..+-.+.. +|++.-=
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~-IP~vt~M 114 (431)
T TIGR01918 65 VARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLN-VPAVTSM 114 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhC-CCeEEEe
Confidence 4678999999999999999753223333445778888888889 9998653
No 223
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.30 E-value=41 Score=28.01 Aligned_cols=50 Identities=6% Similarity=0.016 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.|+..+++.++|++|.|.--.-+-....-|.++..+-.+.. +|++.-=
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~-IP~vtaM 114 (431)
T TIGR01917 65 KAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELG-IKAFTAM 114 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhC-CCeEEEe
Confidence 4678999999999999999753223333445778888888889 9998653
No 224
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=41.18 E-value=1.4e+02 Score=23.76 Aligned_cols=118 Identities=11% Similarity=-0.067 Sum_probs=59.4
Q ss_pred cCC-cchHHHHHHHHHHhccCCCEEEEEEEecCCchhh----HHHHHHHHHHHHHHHHhhhcCceeEEEEec-----CCh
Q 030298 49 DHG-PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI----VYDMSQGLMEKLAIEAMDVAMVRTKARIVE-----GDA 118 (179)
Q Consensus 49 d~s-~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----g~~ 118 (179)
|+- ..-..+++.|..+|+..+....++...+...... ...... ..++ ....++..+++.-+.+.. .-.
T Consensus 23 DGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~-t~ee-R~~~l~~~gVD~~~~~~F~~~~~~ls 100 (305)
T PRK05627 23 DGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLT-PLRD-KAELLAELGVDYVLVLPFDEEFAKLS 100 (305)
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCC-CHHH-HHHHHHHcCCCEEEEecCCHHHhcCC
Confidence 543 4456789999999998887777776544321100 000000 0011 223334445554333221 223
Q ss_pred HHHHH-HH-HHHcCCcEEEEeeCCCCCccccccCch--hHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVIC-KE-AERLKPAAVVIGSRGRGLIQSVLQGSV--GEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~-~~-a~~~~~dliV~G~~~~~~~~~~~~gs~--~~~ll~~~~~~pVlvv~~~ 171 (179)
.+..+ ++ .+..+++.||+|..-+=+-.+ .|+. -.+...... ..|.+++.-
T Consensus 101 ~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~--~G~~~~L~~~~~~~g-~~v~~v~~~ 154 (305)
T PRK05627 101 AEEFIEDLLVKGLNAKHVVVGFDFRFGKKR--AGDFELLKEAGKEFG-FEVTIVPEV 154 (305)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCCCC--CCCHHHHHHHHHHcC-cEEEEeccE
Confidence 34444 43 456899999999764311111 2332 223333346 788888764
No 225
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=40.93 E-value=1.1e+02 Score=24.53 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=22.3
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
...+++.+++|.++|++.+.+++++|=.
T Consensus 140 r~~~eRi~r~AF~~A~~r~~~Vt~v~Ka 167 (322)
T TIGR02088 140 REGSERIARFAFNLAKERNRKVTCVHKA 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4678899999999998888777777643
No 226
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=40.62 E-value=87 Score=26.58 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+..+.|...++++||+=+.. |.++..+.+.-|.|||+++-+..
T Consensus 361 ia~~a~~~a~~~~akaIVv~T~S---------G~TA~~vSr~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 361 IALSAVEAAEKLDAKAIVVLTES---------GRTARLLSKYRPNAPIIAVTPNE 406 (473)
T ss_pred HHHHHHHHHhhcCCCEEEEEcCC---------hHHHHHHHhhCCCCCEEEEcCCH
Confidence 45566677888999999988764 78888888776669999987643
No 227
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=40.62 E-value=1.4e+02 Score=21.79 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=48.0
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh-HHHHHHHHHHHHHHHHhhhcCceeEEEEecC---Ch
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-VYDMSQGLMEKLAIEAMDVAMVRTKARIVEG---DA 118 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g---~~ 118 (179)
++++.+.+...|..++.++.+ .|-++..++...+..... .... ..+ +..+...+..|++....-..+ +-
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~~~~h~--~~~-e~~~~~A~~lgipl~~i~~~~~~e~~ 73 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPEEGSSMMYHT--VNH-ELLELQAEAMGIPLIRIEISGEEEDE 73 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCcccccc--cCH-HHHHHHHHHcCCcEEEEeCCCCchHH
Confidence 478889999888888887766 255666666554322111 0000 011 123333444566655333222 22
Q ss_pred ----HHHHHHHHHHcCCcEEEEeeCC
Q 030298 119 ----AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 119 ----~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.+.|.+.+++ +++.||-|...
T Consensus 74 ~~~l~~~l~~~~~~-g~~~vv~G~i~ 98 (194)
T cd01994 74 VEDLKELLRKLKEE-GVDAVVFGAIL 98 (194)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECccc
Confidence 2333344444 79999999864
No 228
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=40.38 E-value=73 Score=21.33 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=28.6
Q ss_pred cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+++.||+|+...+.+. ++.-+....+.-. |-|.+.|-
T Consensus 60 e~~E~ivvGTG~~G~l~---l~~ea~e~~r~k~-~~vi~~pT 97 (121)
T COG1504 60 EGPEVIVVGTGQSGMLE---LSEEAREFFRKKG-CEVIELPT 97 (121)
T ss_pred cCCcEEEEecCceeEEE---eCHHHHHHHHhcC-CeEEEeCC
Confidence 67999999987655443 3567788888888 99888764
No 229
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=40.35 E-value=1.8e+02 Score=22.89 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhH--HHHHHHHHHHHHHHHhhhcCceeEEEEecC--Ch--HHHHHH
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIV--YDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DA--AKVICK 124 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~~--~~~I~~ 124 (179)
..-...+++..+++....| +..+.+.....+... .++..+.++.. .+..+-++.+..-.| +. +-.+.+
T Consensus 20 g~vD~~a~~~lv~~li~~G--v~gi~~~GttGE~~~Ls~eEr~~v~~~~----v~~~~grvpviaG~g~~~t~eai~lak 93 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAG--VDGLVVLGTTGESPTLTLEERKEVLEAV----VEAVGGRVPVIAGVGSNSTAEAIELAK 93 (299)
T ss_pred CCcCHHHHHHHHHHHHHcC--CCEEEECCCCccchhcCHHHHHHHHHHH----HHHHCCCCcEEEecCCCcHHHHHHHHH
Confidence 3356777887777776655 444555444332222 23333333332 222222222222223 33 556778
Q ss_pred HHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 125 EAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.|++.++|-+++-........+ .+. .--..|+..+. .|+++...
T Consensus 94 ~a~~~Gad~il~v~PyY~k~~~~gl~-~hf~~ia~a~~-lPvilYN~ 138 (299)
T COG0329 94 HAEKLGADGILVVPPYYNKPSQEGLY-AHFKAIAEAVD-LPVILYNI 138 (299)
T ss_pred HHHhcCCCEEEEeCCCCcCCChHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 8999999999998876655443 222 22356788887 99998853
No 230
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=40.25 E-value=2.4e+02 Score=24.22 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCE----EEEEEEecCCch----hhHHHHHHHHHHHHHHHHhhhcCceeEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADT----IHLVHAVSSVQN----QIVYDMSQGLMEKLAIEAMDVAMVRTKA 111 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~----l~~v~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 111 (179)
+.++||+--+.++.....+.-.+..+...|.. ++.+.+...... ....+...+.++. .++...++.-.
T Consensus 28 ~~~~vl~Iag~D~sGgaGi~aDl~t~~a~g~~~~~v~Talt~q~t~~v~~v~~~~~~~i~~ql~~----l~~d~~~~aik 103 (530)
T PRK14713 28 ATPRVLSIAGTDPSGGAGIQADLKSIAAAGGYGMAVITALVAQNTRGVRAVHVPPADFLRAQLDA----VSDDVTVDAVK 103 (530)
T ss_pred CCCeEEEEeCcCCCcHHHHHHHHHHHHHcCCeecchhheEeeecCcceeeeccCCHHHHHHHHHH----HHhCCCCCEEE
Confidence 34667776677777888899888888888764 445555444221 1112333333333 33322222211
Q ss_pred EEecC--ChHHHHHHHHHHcCCcEEEEee
Q 030298 112 RIVEG--DAAKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 112 ~~~~g--~~~~~I~~~a~~~~~dliV~G~ 138 (179)
.-.-| +..+.+.++.+..+...||+..
T Consensus 104 iG~l~s~~~i~~v~~~l~~~~~~~vVlDP 132 (530)
T PRK14713 104 IGMLGDAEVIDAVRTWLAEHRPPVVVLDP 132 (530)
T ss_pred ECCcCCHHHHHHHHHHHHhCCCCCEEECC
Confidence 11123 3567777777765555566554
No 231
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=39.91 E-value=64 Score=22.41 Aligned_cols=48 Identities=8% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGD 175 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~~ 175 (179)
...+++.++..++|+|++.+-+.. .....++..+. -.++++.++..+.
T Consensus 80 ~~~~~~~~~~~~~D~iiIDtaG~~--------~~~~~~~~~Ad-~~ivv~tpe~~D~ 127 (148)
T cd03114 80 TPEVIRVLDAAGFDVIIVETVGVG--------QSEVDIASMAD-TTVVVMAPGAGDD 127 (148)
T ss_pred HHHHHHHHHhcCCCEEEEECCccC--------hhhhhHHHhCC-EEEEEECCCchhH
Confidence 455667777779999999984321 12234777777 7888887764443
No 232
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=39.83 E-value=92 Score=23.49 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=39.2
Q ss_pred HHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHH--hcCCCCcEEEEcCCCC
Q 030298 96 KLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCL--HHCKTAPIIVVPGKEA 173 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll--~~~~~~pVlvv~~~~~ 173 (179)
......++..|..+... ..| +...+.++.. +|+|++...-. ...++ .....+- .... .||+++-..+.
T Consensus 14 ~~l~~~L~~~g~~v~~~-~~~---~~a~~~~~~~-~dlviLD~~lP-~~dG~---~~~~~iR~~~~~~-~PIi~Lta~~~ 83 (229)
T COG0745 14 ELLKEYLEEEGYEVDVA-ADG---EEALEAAREQ-PDLVLLDLMLP-DLDGL---ELCRRLRAKKGSG-PPIIVLTARDD 83 (229)
T ss_pred HHHHHHHHHCCCEEEEE-CCH---HHHHHHHhcC-CCEEEEECCCC-CCCHH---HHHHHHHhhcCCC-CcEEEEECCCc
Confidence 44556667777776532 223 4555566656 99999997643 22221 1223333 2355 78999877644
Q ss_pred C
Q 030298 174 G 174 (179)
Q Consensus 174 ~ 174 (179)
.
T Consensus 84 ~ 84 (229)
T COG0745 84 E 84 (229)
T ss_pred H
Confidence 3
No 233
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.77 E-value=1.8e+02 Score=22.57 Aligned_cols=113 Identities=13% Similarity=0.008 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh--HHHHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--AKVICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~~I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+...+. .-.+.+.+++
T Consensus 19 id~~~~~~~i~~l~~~Gv--~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~-~~~~vi~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGV--DGLVVLGSTGEFYSLTDEERKELLEIVVEAA-A-GRVPVIAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp B-HHHHHHHHHHHHHTTS--SEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-T-TSSEEEEEEESSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECCCCcccccCCHHHHHHHHHHHHHHc-c-CceEEEecCcchhHHHHHHHHHHHhh
Confidence 345555555555544443 344444432222 22233333333333222 1 23444433333344 4455677899
Q ss_pred cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++..........--+-.--+.|+..++ .|+++...
T Consensus 95 ~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~-~pi~iYn~ 135 (289)
T PF00701_consen 95 AGADAVLVIPPYYFKPSQEELIDYFRAIADATD-LPIIIYNN 135 (289)
T ss_dssp TT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS-SEEEEEEB
T ss_pred cCceEEEEeccccccchhhHHHHHHHHHHhhcC-CCEEEEEC
Confidence 999988877654433222111123466777788 99998754
No 234
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=39.56 E-value=90 Score=21.80 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC-C-C--ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR-G-L--IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~-~-~--~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
..+.|....++++++.||+|-.-. . . ...-..-..++.|-+..+ +||.++-.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~-lpv~l~DE 96 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFN-LPVVLWDE 96 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcC-CCEEEEcC
Confidence 578899999999999999997641 1 1 111123456677777888 99988754
No 235
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=39.51 E-value=1.2e+02 Score=20.71 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=21.4
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
.++|++.+...|..++..+.+.. +-++.++++..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCC
Confidence 57888888887777766654432 22566666643
No 236
>PLN02762 pyruvate kinase complex alpha subunit
Probab=39.18 E-value=1e+02 Score=26.54 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+..+.|...++.+||+-++. |.++..+.+.-|.||++.+-+..
T Consensus 397 ia~sa~~~A~~l~a~aIv~~T~s---------G~tA~~iSk~RP~~pIia~t~~~ 442 (509)
T PLN02762 397 ICNSAAKMANNLGVDAIFVYTKH---------GHMASLLSRNRPDCPIFAFTDTT 442 (509)
T ss_pred HHHHHHHHHhhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 45566677888999999887663 78888888876669999886643
No 237
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=39.14 E-value=1.3e+02 Score=21.97 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCc-EEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 120 KVICKEAERLKPA-AVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 120 ~~I~~~a~~~~~d-liV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.+.+..++...+ .+++|++-. |-.+..+..+.+ +|.+++.|
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlG--------G~~A~~La~~~~-~~avLiNP 89 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLG--------GFYATYLAERYG-LPAVLINP 89 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChH--------HHHHHHHHHHhC-CCEEEEcC
Confidence 3344445544433 788887721 334555666666 77776654
No 238
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=38.97 E-value=1.3e+02 Score=20.82 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.4
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
+|+|.+.+.+.|..++..+.+..... .++|+....
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~ 35 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY 35 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc
Confidence 47889999999999998887777653 577775543
No 239
>PRK08194 tartrate dehydrogenase; Provisional
Probab=38.76 E-value=1.4e+02 Score=24.35 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
..+++.+++|.++|+..+.+++++|=..
T Consensus 161 ~~~eRI~r~Af~~A~~r~~~Vt~v~KaN 188 (352)
T PRK08194 161 KGTERAMRYAFELAAKRRKHVTSATKSN 188 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCcc
Confidence 5678899999999988766788887543
No 240
>PRK05370 argininosuccinate synthase; Validated
Probab=38.73 E-value=2.4e+02 Score=23.83 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=57.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCc--hh--hHH--------------HHHHHHHHHHHHHHhh
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ--NQ--IVY--------------DMSQGLMEKLAIEAMD 103 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~--~~--~~~--------------~~~~~~l~~~~~~~~~ 103 (179)
++|++++.+.-.+..++.|...- +..++.+++.-.+. .+ ... +..++..+.++ .+..
T Consensus 12 ~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i-~aI~ 86 (447)
T PRK05370 12 QRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AAIQ 86 (447)
T ss_pred CEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH-HHHH
Confidence 79999999988888888876543 77888888855431 11 111 12222333333 2222
Q ss_pred hcCcee------EEEEec--CC--hHHHHHHHHHHcCCcEEEEeeCCCCC
Q 030298 104 VAMVRT------KARIVE--GD--AAKVICKEAERLKPAAVVIGSRGRGL 143 (179)
Q Consensus 104 ~~~~~~------~~~~~~--g~--~~~~I~~~a~~~~~dliV~G~~~~~~ 143 (179)
. +.-. .+-... +. .+..+++.|++.+++.|.=|+.+.+.
T Consensus 87 a-nA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGN 135 (447)
T PRK05370 87 C-GAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGN 135 (447)
T ss_pred c-CCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCC
Confidence 1 1111 111111 22 47899999999999999999986544
No 241
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=38.60 E-value=1.8e+02 Score=22.22 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=19.7
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
......++-.|..++.+ |.++.++-..+..
T Consensus 13 aGKTT~~~~LAs~la~~-G~~V~lIDaDpn~ 42 (231)
T PF07015_consen 13 AGKTTAAMALASELAAR-GARVALIDADPNQ 42 (231)
T ss_pred CcHHHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 34455667777777664 7888888775544
No 242
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=38.55 E-value=1.5e+02 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.1
Q ss_pred CceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 106 MVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 106 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
+..+-+.+..++..+.+...+.+.++|+|++.-...
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~G 238 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEG 238 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT-
T ss_pred CCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCC
Confidence 677888888888888888888889999999987653
No 243
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=38.12 E-value=2.5e+02 Score=23.86 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=40.7
Q ss_pred HHHHhhhcCceeEEEEecC-ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc------CCCCcEEEEcC
Q 030298 98 AIEAMDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH------CKTAPIIVVPG 170 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~------~~~~pVlvv~~ 170 (179)
.+..++..++++++..... .-+..+++.+...++|.||+. .+-+.+.+. .+.++.. .. +|+-++|.
T Consensus 135 v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~v-GGDGTlnEV-----vNGL~~~~~~~~~~~-~pLGiIPa 207 (481)
T PLN02958 135 VKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCV-SGDGILVEV-----VNGLLEREDWKTAIK-LPIGMVPA 207 (481)
T ss_pred HHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEE-cCCCHHHHH-----HHHHhhCcccccccc-CceEEecC
Confidence 3444566677777665553 345566666656678877765 444444443 3444432 25 88888886
Q ss_pred CCCC
Q 030298 171 KEAG 174 (179)
Q Consensus 171 ~~~~ 174 (179)
...+
T Consensus 208 GTgN 211 (481)
T PLN02958 208 GTGN 211 (481)
T ss_pred cCcc
Confidence 5443
No 244
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.12 E-value=1.2e+02 Score=23.93 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCC-ccccccCchhHHHHhcCCCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~-~~~~~~gs~~~~ll~~~~~~pVlv 167 (179)
-....++++.|++.+..+|+..+.+.-. .....+......+.++++ +||.+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~-VPVal 79 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-MPLAL 79 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 4789999999999999999987654322 122224567788889999 99986
No 245
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=37.80 E-value=84 Score=26.75 Aligned_cols=47 Identities=26% Similarity=0.279 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.+....+.|.+.+++.||+-+.. |.++..+.+.-+.||++++-+...
T Consensus 363 ia~sAv~~A~~l~akaIVv~T~S---------G~TA~~lS~~RP~~pIiavT~~~~ 409 (480)
T cd00288 363 VAMSAVRAAFELGAKAIVVLTTS---------GRTARLVSKYRPNAPIIAVTRNEQ 409 (480)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCCHH
Confidence 34556677888889988888764 778888887655599999976543
No 246
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=37.70 E-value=1.1e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc--cccCchhHHHHhcCCCCcEEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS--VLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~--~~~gs~~~~ll~~~~~~pVlvv 168 (179)
-+...+|++.|++.+..+||=.+.+.-.... ..+-.....++.+.+ +||.+=
T Consensus 28 lE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~-vPV~lH 81 (286)
T COG0191 28 LETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG-VPVALH 81 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-CCEEEE
Confidence 3689999999999999999988876433222 223356677888899 999874
No 247
>PTZ00300 pyruvate kinase; Provisional
Probab=37.70 E-value=1.1e+02 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+..+.|...++++||+=+.. |.++..+.+.-|.||++.+-+..
T Consensus 336 ia~sa~~~a~~l~a~aIiv~T~s---------G~tA~~vs~~RP~~pIia~t~~~ 381 (454)
T PTZ00300 336 VCSSAVNSVYETKAKALVVLSNT---------GRSARLVAKYRPNCPIVCVTTRL 381 (454)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 34566677888999988887663 77888888876669999886543
No 248
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=37.65 E-value=1.4e+02 Score=24.42 Aligned_cols=78 Identities=9% Similarity=0.045 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKP 131 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 131 (179)
..+++.+++|.++|...+.+++++|=..... ......+..++..+ +..+++++..+ .......++.. -.++
T Consensus 166 ~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~---~~glf~~~~~eva~---eyp~i~~~~~~-vDa~~~~lv~~--P~~f 236 (358)
T PRK00772 166 EEIERIARVAFELARKRRKKVTSVDKANVLE---SSRLWREVVTEVAK---EYPDVELSHMY-VDNAAMQLVRN--PKQF 236 (358)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECccccc---cchHHHHHHHHHHh---HCCCceEEEEe-HHHHHHHHhhC--cccC
Confidence 5678899999999988777888887544322 12233333333222 33456655433 22222233322 2457
Q ss_pred cEEEEee
Q 030298 132 AAVVIGS 138 (179)
Q Consensus 132 dliV~G~ 138 (179)
|.||...
T Consensus 237 DViv~~N 243 (358)
T PRK00772 237 DVIVTEN 243 (358)
T ss_pred eEEeecC
Confidence 8666653
No 249
>PRK06354 pyruvate kinase; Provisional
Probab=37.61 E-value=1e+02 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
+.+..+.|...++++||+-++. |.++..+.+.-|.||++.+-+..
T Consensus 366 a~aa~~~a~~~~a~~Iv~~T~s---------G~ta~~vsk~Rp~~pI~a~t~~~ 410 (590)
T PRK06354 366 SQAVSHIALQLDAAAIVTLTKS---------GATARNVSKYRPKTPILAVTPNE 410 (590)
T ss_pred HHHHHHHHhhcCCCEEEEECCC---------hHHHHHHHhhCCCCCEEEECCCH
Confidence 4555577788899999987663 78889888876669999987654
No 250
>PRK00509 argininosuccinate synthase; Provisional
Probab=37.55 E-value=2.4e+02 Score=23.44 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=28.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
++|+|++.+.-.|..++.++.+. +|.+++.+++....
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~Gq 39 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVGQ 39 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecCC
Confidence 68999999998888877776542 36788888886553
No 251
>PLN02461 Probable pyruvate kinase
Probab=37.11 E-value=1e+02 Score=26.51 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.+..+.|...++++||+=+.. |.++..+.+.-|.||++.+-
T Consensus 383 ia~sav~~A~~l~a~aIiv~T~s---------G~tA~~iSk~RP~~pIia~t 425 (511)
T PLN02461 383 LASSAVRTANKVKASLIVVLTRG---------GTTARLVAKYRPAVPILSVV 425 (511)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEe
Confidence 45566677889999988887663 78888888876669999994
No 252
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=36.83 E-value=2.6e+02 Score=23.58 Aligned_cols=107 Identities=7% Similarity=-0.075 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhh------HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHH
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI------VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKE 125 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~ 125 (179)
-....||..|++ .+ .+..|+|.++..... ......+.+..+ ++.+...|....+. ..|++.+.|.++
T Consensus 10 l~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L-~~~L~~~G~~L~v~-~~g~~~~~l~~l 82 (475)
T TIGR02766 10 VEDNPALAAAAR----AG-PVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHL-DQSLRSLGTCLVTI-RSTDTVAALLDC 82 (475)
T ss_pred cchHHHHHHHHh----CC-CEEEEEEechHHhccccccHHHHHHHHHHHHHH-HHHHHHcCCceEEE-eCCCHHHHHHHH
Confidence 344556655542 23 688888887532111 111223444443 33345556665432 258999999999
Q ss_pred HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 126 AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 126 a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
+++.+++-|..-.. ........ -....+.+...+ +.+..+
T Consensus 83 ~~~~~i~~v~~~~~-~~~~~~~r-d~~v~~~l~~~g-i~~~~~ 122 (475)
T TIGR02766 83 VRSTGATRLFFNHL-YDPVSLVR-DHRAKEVLTAQG-ISVQSF 122 (475)
T ss_pred HHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcC-CEEEEe
Confidence 99999999988765 33322221 233455555555 655433
No 253
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=36.52 E-value=72 Score=24.48 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=11.8
Q ss_pred HHHhcCCCCcEEEEcCCCC
Q 030298 155 YCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 155 ~ll~~~~~~pVlvv~~~~~ 173 (179)
+.|...+ ||+++||....
T Consensus 83 ~~L~~~~-~p~~~vPG~~D 100 (255)
T PF14582_consen 83 RILGELG-VPVFVVPGNMD 100 (255)
T ss_dssp HHHHCC--SEEEEE--TTS
T ss_pred HHHHhcC-CcEEEecCCCC
Confidence 4677899 99999997654
No 254
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=36.23 E-value=1.5e+02 Score=20.63 Aligned_cols=102 Identities=9% Similarity=-0.018 Sum_probs=56.9
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhc-CceeEEEEecCC-
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVA-MVRTKARIVEGD- 117 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~g~- 117 (179)
..+|++.+++... ..+++++..+...+ |.++ + ..+. ..+.++.. |++++..+....
T Consensus 4 ~~~v~lsv~d~dK-~~l~~~a~~l~~ll~Gf~l--~-AT~g-----------------Ta~~L~~~~Gi~v~~vi~~~~g 62 (142)
T PRK05234 4 RKRIALIAHDHKK-DDLVAWVKAHKDLLEQHEL--Y-ATGT-----------------TGGLIQEATGLDVTRLLSGPLG 62 (142)
T ss_pred CcEEEEEEeccch-HHHHHHHHHHHHHhcCCEE--E-EeCh-----------------HHHHHHhccCCeeEEEEcCCCC
Confidence 3678888877664 45678887777654 4342 2 2221 11122334 787775533301
Q ss_pred hHHHHHHHHHHcCCcEEEEee--CCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 118 AAKVICKEAERLKPAAVVIGS--RGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~--~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
....|.+..++.++|+||--. .+...... -|..-.+..-... +|++
T Consensus 63 g~~~i~~~I~~g~i~lVInt~dp~~~~~~~~--D~~~IRR~Av~~~-IP~~ 110 (142)
T PRK05234 63 GDQQIGALIAEGKIDMLIFFRDPLTAQPHDP--DVKALLRLADVWN-IPVA 110 (142)
T ss_pred CchhHHHHHHcCceeEEEEecCCCCCCcccc--hHHHHHHHHHHcC-CCEE
Confidence 136799999999999999876 33222111 1223344444455 6665
No 255
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=36.22 E-value=1e+02 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=28.1
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCE-EEEEEE
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADT-IHLVHA 77 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~-l~~v~v 77 (179)
+..++|++++|++.....|...|+..+...+.. +.++..
T Consensus 288 r~~~~vil~fDgD~AG~~Aa~ral~~~~~~~~~~v~v~~~ 327 (568)
T COG0358 288 RGKKKVILCFDGDRAGRKAAKRALQLVLPLDFVGVFVILL 327 (568)
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHHHhhhhccCCeEEEEC
Confidence 445779999999999999988888876655433 444433
No 256
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=36.17 E-value=1.5e+02 Score=23.70 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+....++...+ +|+||+|.+.. +-..-+....+.+.| ++ .||+.|-+
T Consensus 174 ~a~p~vl~AI~~--AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~-a~vV~Vsp 223 (303)
T PRK13606 174 KPAPGVLEAIEE--ADAVIIGPSNPVTSIGPILAVPGIREAL---TE-APVVAVSP 223 (303)
T ss_pred CCCHHHHHHHHh--CCEEEECCCccHHhhchhccchhHHHHH---hC-CCEEEEcC
Confidence 467788888888 99999997752 223334456666666 56 78886643
No 257
>PLN02765 pyruvate kinase
Probab=36.17 E-value=1e+02 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.+..+.|...++.+||+-+.. |.++..+.+.-|.|||+.+-
T Consensus 396 ia~sav~~A~~l~a~aIvv~T~s---------G~tAr~isk~RP~~pIla~t 438 (526)
T PLN02765 396 IASSAVRAAIKVKASVIIVFTSS---------GRAARLIAKYRPTMPVLSVV 438 (526)
T ss_pred HHHHHHHHHhhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEe
Confidence 45566677888999988887663 78889898876669999986
No 258
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=35.89 E-value=1.5e+02 Score=24.13 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCc-cc---cc------------cCchhHHHHhcCCCCcEEE
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLI-QS---VL------------QGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~-~~---~~------------~gs~~~~ll~~~~~~pVlv 167 (179)
+...++++.|++.+..+|+..+.+.... .. .. +......++++++ +||.+
T Consensus 32 e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~-VPVal 97 (350)
T PRK09197 32 DSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYG-VPVIL 97 (350)
T ss_pred HHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCC-CCEEE
Confidence 7899999999999999999887653221 10 11 3456778888999 99765
No 259
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=35.65 E-value=1.7e+02 Score=23.86 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCc-cc----c------------ccCchhHHHHhcCCCCcEEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLI-QS----V------------LQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~-~~----~------------~~gs~~~~ll~~~~~~pVlvv 168 (179)
-....++++.|++.+..+|+..+.+.-.. .. . .+......+..+++ +||.+=
T Consensus 37 ~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~-VPValH 105 (357)
T TIGR01520 37 SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG-VPVVLH 105 (357)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC-CCEEEE
Confidence 47899999999999999999887654221 11 0 13456778888999 998763
No 260
>PTZ00066 pyruvate kinase; Provisional
Probab=35.52 E-value=1.3e+02 Score=25.96 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+..+.|...++.+||+=+.. |.++..+.+.-|.||++.+-+..
T Consensus 399 ia~aa~~~A~~l~a~aIv~~T~S---------G~TAr~iSk~RP~~pIia~t~~~ 444 (513)
T PTZ00066 399 VARSAVETAEDINAKLIIALTET---------GNTARLISKYRPSCTILALSASP 444 (513)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 56677778889999988888764 78888888876669999986643
No 261
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=35.51 E-value=2e+02 Score=22.00 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHhccCCCEEEEE
Q 030298 54 SKHAFDWALIHLCRLADTIHLV 75 (179)
Q Consensus 54 s~~al~~a~~la~~~~~~l~~v 75 (179)
...+.++.++++...++++.++
T Consensus 13 ~~~i~~~~~~lag~~~~rI~~i 34 (250)
T TIGR02069 13 DREILREFVSRAGGEDAIIVII 34 (250)
T ss_pred hHHHHHHHHHHhCCCCceEEEE
Confidence 3446777777776655555544
No 262
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=35.39 E-value=2.3e+02 Score=22.66 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=49.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec---CC-
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---GD- 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---g~- 117 (179)
.+..|..-.++.--+ .+|.+||++ |-++.++. . .++.++...++..+..++++.+++.. ++
T Consensus 49 g~WAVVTGaTDGIGK--ayA~eLAkr-G~nvvLIs--R----------t~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~ 113 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGK--AYARELAKR-GFNVVLIS--R----------TQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDE 113 (312)
T ss_pred CCEEEEECCCCcchH--HHHHHHHHc-CCEEEEEe--C----------CHHHHHHHHHHHHHHhCcEEEEEEEecCCCch
Confidence 456665555544333 567788884 66644442 2 13455555666666666777777655 34
Q ss_pred hHHHHHHHHHHcCCcEEEEe
Q 030298 118 AAKVICKEAERLKPAAVVIG 137 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G 137 (179)
.-+.|.+.....++..+|=-
T Consensus 114 ~ye~i~~~l~~~~VgILVNN 133 (312)
T KOG1014|consen 114 VYEKLLEKLAGLDVGILVNN 133 (312)
T ss_pred hHHHHHHHhcCCceEEEEec
Confidence 37788888888777777743
No 263
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=35.34 E-value=1.1e+02 Score=23.92 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv 168 (179)
-+...++++.|++.+..+|+--+.+.-.... ..+......+.+++. +||.+=
T Consensus 23 ~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-VPV~lH 75 (276)
T cd00947 23 LETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-VPVALH 75 (276)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-CCEEEE
Confidence 3678999999999999998877665432222 234567777888888 998763
No 264
>PRK09206 pyruvate kinase; Provisional
Probab=35.34 E-value=1.2e+02 Score=25.79 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+..+.|...++.+||+-+.. |.++..+.+.-|.||++.+-+..
T Consensus 358 ia~sa~~~A~~l~a~aIv~~T~s---------G~tA~~is~~RP~~pIia~t~~~ 403 (470)
T PRK09206 358 VCRGAVETAEKLDAPLIVVATQG---------GKSARSVRKYFPDATILALTTNE 403 (470)
T ss_pred HHHHHHHHHhcCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 45566677888999988887653 78889888776669999987654
No 265
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=35.20 E-value=2.3e+02 Score=22.77 Aligned_cols=17 Identities=6% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCCcEEE
Q 030298 119 AKVICKEAERLKPAAVV 135 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV 135 (179)
.+.+.+.+++.++|+||
T Consensus 76 v~~~~~~~~~~~~d~II 92 (350)
T PRK00843 76 VEKVEEKAKDVNAGFLI 92 (350)
T ss_pred HHHHHHHhhccCCCEEE
Confidence 33444444444555443
No 266
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=35.16 E-value=99 Score=19.75 Aligned_cols=45 Identities=9% Similarity=-0.071 Sum_probs=25.2
Q ss_pred HHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 97 LAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
.+++.++..|+++.+..........-+....-.++|+||+.....
T Consensus 20 ~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 20 ALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVP 64 (96)
T ss_pred HHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCC
Confidence 344556667777766554433222223223334499999987653
No 267
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=35.10 E-value=2.2e+02 Score=22.22 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=49.6
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-C--
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-G-- 116 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g-- 116 (179)
+.++++|-=-.+ --..++|..+|++ |.+|.++- ..++.+.++.++.....++++++.... .
T Consensus 5 ~~~~~lITGASs---GIG~~~A~~lA~~-g~~liLva------------R~~~kL~~la~~l~~~~~v~v~vi~~DLs~~ 68 (265)
T COG0300 5 KGKTALITGASS---GIGAELAKQLARR-GYNLILVA------------RREDKLEALAKELEDKTGVEVEVIPADLSDP 68 (265)
T ss_pred CCcEEEEECCCc---hHHHHHHHHHHHC-CCEEEEEe------------CcHHHHHHHHHHHHHhhCceEEEEECcCCCh
Confidence 345666643332 3456677778875 66666653 123455555556555556777765554 2
Q ss_pred ChHHHHHHHHHHc--CCcEEEEeeC
Q 030298 117 DAAKVICKEAERL--KPAAVVIGSR 139 (179)
Q Consensus 117 ~~~~~I~~~a~~~--~~dliV~G~~ 139 (179)
+....+.+..+.. .+|++|=-+.
T Consensus 69 ~~~~~l~~~l~~~~~~IdvLVNNAG 93 (265)
T COG0300 69 EALERLEDELKERGGPIDVLVNNAG 93 (265)
T ss_pred hHHHHHHHHHHhcCCcccEEEECCC
Confidence 3455666665554 7999987654
No 268
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=34.63 E-value=1.9e+02 Score=21.47 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=56.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCcee-EEEEecC--C
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRT-KARIVEG--D 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~g--~ 117 (179)
..+.+++.+...-....+...... ..+ .++++..+.+.--.....+.....+++ .++...++.. .++...+ +
T Consensus 23 ~~~~l~lsGGstp~~~y~~L~~~~-~i~w~~v~~f~~DEr~Vp~~~~~Sn~~~~~~---~ll~~~~~~~~~v~~~~~~~~ 98 (219)
T cd01400 23 GRFSLALSGGSTPKPLYELLAAAP-ALDWSKVHVFLGDERCVPPDDPDSNYRLARE---ALLSHVAIPAANIHPIPTELG 98 (219)
T ss_pred CeEEEEECCCccHHHHHHHhcccc-CCCCceEEEEEeeccccCCCCcccHHHHHHH---HhhccCCCCHhhEEeCCCCCC
Confidence 567888887776666666443332 233 578888887643211112222223332 2222222221 1222222 4
Q ss_pred hHHHHHHHHH---H-----cCCcEEEEeeCCCCCccccccCch
Q 030298 118 AAKVICKEAE---R-----LKPAAVVIGSRGRGLIQSVLQGSV 152 (179)
Q Consensus 118 ~~~~I~~~a~---~-----~~~dliV~G~~~~~~~~~~~~gs~ 152 (179)
+.++..+|.+ + ...|++++|-..-+-....+-|+.
T Consensus 99 ~~~~a~~y~~~i~~~~~~~~~~Dl~lLGmG~DGH~ASlfP~~~ 141 (219)
T cd01400 99 PEDAAAAYEKELRALFGGVPPFDLVLLGMGPDGHTASLFPGHP 141 (219)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEECCcCCCceeecCCCCc
Confidence 5666666643 2 368999999876665666555653
No 269
>PRK05826 pyruvate kinase; Provisional
Probab=34.62 E-value=1.3e+02 Score=25.48 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcC-CcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLK-PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~-~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+....|...+ ++.||+=+.. |.++..+.+.-|.||++++-+..
T Consensus 360 ia~aa~~~a~~l~~a~~Ivv~T~s---------G~ta~~isk~RP~~pI~~~t~~~ 406 (465)
T PRK05826 360 IAMSAMYAANHLKGVKAIVALTES---------GRTARLISRFRPGAPIFAVTRDE 406 (465)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCCH
Confidence 3555667788888 8888886553 77888888876669999986653
No 270
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=34.54 E-value=1.1e+02 Score=24.01 Aligned_cols=91 Identities=10% Similarity=0.056 Sum_probs=48.9
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHH-HHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYD-MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
++++=-=+-++..-+..+....+..|+++.---...+....+... ..++.+. +..+.....|..+.+.+..-.-.+.+
T Consensus 47 ~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~-~l~~a~~~~Gl~vvtEvm~~~~~e~~ 125 (286)
T COG2876 47 RVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLK-LLKRAADETGLPVVTEVMDVRDVEAA 125 (286)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHH-HHHHHHHHcCCeeEEEecCHHHHHHH
Confidence 444433344555555555566666777766555555544333322 2223333 34455666788877776554333444
Q ss_pred HHHHHHcCCcEEEEeeCC
Q 030298 123 CKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~ 140 (179)
.++ +|+|=+|++.
T Consensus 126 ~~y-----~DilqvGARN 138 (286)
T COG2876 126 AEY-----ADILQVGARN 138 (286)
T ss_pred Hhh-----hhHHHhcccc
Confidence 333 6677777764
No 271
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=34.28 E-value=1.4e+02 Score=20.20 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=29.0
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
..+|+|+-|....+....+.+..-....|.++..+...+
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~ 78 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVP 78 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccC
Confidence 478889999888888888877777777777777776443
No 272
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=33.77 E-value=1.2e+02 Score=23.88 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEE
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlv 167 (179)
....++++.|++.+.-+|+..+.+.-.... ..+......+++++. +||.+
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~-vPV~l 79 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD-VPVSL 79 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC-CCEEE
Confidence 578899999999999999988665322222 234567777888888 99875
No 273
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=33.73 E-value=2.7e+02 Score=22.95 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
..|||.+-+.......+..++..+... +.+-..+-+..+... +...+ .+...+.+..+++ + ....+-..
T Consensus 220 ~~Ilvs~GGG~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP----~~~r~---~l~~~A~~~p~i~--I-~~f~~~~~ 289 (400)
T COG4671 220 FDILVSVGGGADGAELIETALAAAQLLAGLNHKWLIVTGPFMP----EAQRQ---KLLASAPKRPHIS--I-FEFRNDFE 289 (400)
T ss_pred ceEEEecCCChhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCC----HHHHH---HHHHhcccCCCeE--E-EEhhhhHH
Confidence 679999999888888888777666552 222113333333211 11111 2222222222232 2 23344444
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCCCCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAGDAS 177 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~~~~ 177 (179)
.++.-|+. ++...|+ +|.-.|+. +. ||-||||...+++++
T Consensus 290 ~ll~gA~~------vVSm~GY---------NTvCeILs-~~-k~aLivPr~~p~eEQ 329 (400)
T COG4671 290 SLLAGARL------VVSMGGY---------NTVCEILS-FG-KPALIVPRAAPREEQ 329 (400)
T ss_pred HHHHhhhe------eeecccc---------hhhhHHHh-CC-CceEEeccCCCcHHH
Confidence 55554443 3333333 35566766 88 999999988877654
No 274
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=33.73 E-value=1.4e+02 Score=22.37 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
...+++.+.+.++|.|++.............-....++.+..+ +||++.-.
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~-~pvia~GG 201 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVN-IPVIASGG 201 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CCEEEeCC
Confidence 4466677788899988886544333222233456677888888 99988643
No 275
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=33.59 E-value=1.5e+02 Score=24.58 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=8.8
Q ss_pred hhHHHHhcCCCCcEEE
Q 030298 152 VGEYCLHHCKTAPIIV 167 (179)
Q Consensus 152 ~~~~ll~~~~~~pVlv 167 (179)
....++.... +.|+-
T Consensus 92 ~~~~~l~~~g-i~vl~ 106 (407)
T PRK10966 92 ESRDLLAFLN-TTVIA 106 (407)
T ss_pred hHHHHHHHCC-cEEEe
Confidence 3456777666 55553
No 276
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.02 E-value=3e+02 Score=23.15 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=54.9
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--- 120 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--- 120 (179)
.+|.+.++......-.+|..+-+ .|-+.-++.. +..... ..+.+. ......++++.....+-+|+.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kk-kG~K~~Lvca-DTFRag--------AfDQLk-qnA~k~~iP~ygsyte~dpv~ia~ 173 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKK-KGYKVALVCA-DTFRAG--------AFDQLK-QNATKARVPFYGSYTEADPVKIAS 173 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHh-cCCceeEEee-cccccc--------hHHHHH-HHhHhhCCeeEecccccchHHHHH
Confidence 45677888776666777755544 3656555544 221111 112222 223334566655444455543
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCcccccc
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQ 149 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~ 149 (179)
.=++-.++.++|+||+.+++|..-..-+|
T Consensus 174 egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 174 EGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred HHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 34455778899999999999877665554
No 277
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.97 E-value=1.1e+02 Score=19.94 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=26.0
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
.+.+++.+..+..+...++ +++.|+..|+++..+.-.
T Consensus 46 ~~d~~I~iS~sG~t~e~~~-~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQSGETADTLA-ALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCCcCCHHHHH-HHHHHHHcCCeEEEEECC
Confidence 4678888888887777665 447777777776666543
No 278
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=32.97 E-value=77 Score=18.71 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=9.5
Q ss_pred eEEEEecCCcchHHHHHHHH
Q 030298 43 DILIAVDHGPNSKHAFDWAL 62 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~ 62 (179)
+|.++.|.+.....+...+.
T Consensus 49 ~Iii~~D~D~~G~~~~~~i~ 68 (76)
T smart00493 49 EVILATDPDREGEAIAWKLA 68 (76)
T ss_pred EEEEEcCCChhHHHHHHHHH
Confidence 45555555554444444333
No 279
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=1.4e+02 Score=20.28 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-.+.+++.++++|+||.+.-+ .-+-..++... +-|+..++
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG----------~~a~~~l~~~G-Ikv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIG----------PNAYNALKAAG-IKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccC----------HHHHHHHHHcC-cEEEecCC
Confidence 356777777777777777543 33444555555 55555443
No 280
>PRK00766 hypothetical protein; Provisional
Probab=32.89 E-value=1.7e+02 Score=21.59 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=35.7
Q ss_pred ceeEEEEecC-ChHHHHHHHHHH----cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 107 VRTKARIVEG-DAAKVICKEAER----LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 107 ~~~~~~~~~g-~~~~~I~~~a~~----~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
+-.......| |..+.|++..+. .+..+|++..-..+++.= -..+.|.+... .||++|
T Consensus 43 v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv----vD~~~l~~~tg-~PVI~V 104 (194)
T PRK00766 43 VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV----VDIEELYRETG-LPVIVV 104 (194)
T ss_pred EEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE----ecHHHHHHHHC-CCEEEE
Confidence 3344444556 788888888765 355567766444333331 13466778888 999988
No 281
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=32.07 E-value=2.8e+02 Score=22.66 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=45.7
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (179)
..++|.+-.+.+......++...+.++..|..+......+....... ...+.... ........+.++-+.....+..
T Consensus 171 ~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~--~~~~~~~~-~~~~ik~~~a~vVvv~~~~~~~ 247 (403)
T cd06361 171 GWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSDNT--KLNRIIRT-TEKIIEENKVNVIVVFARQFHV 247 (403)
T ss_pred CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCcch--hHHHHHHH-HHHHHhcCCCeEEEEEeChHHH
Confidence 44666666666655666666555666555543322222222111000 00011111 1121222333333222223456
Q ss_pred HHHHHHHHHcCCcEEEEeeCC
Q 030298 120 KVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~ 140 (179)
..|++.+++.+.+.+.+|+.+
T Consensus 248 ~~l~~~a~~~g~~~~wigs~~ 268 (403)
T cd06361 248 FLLFNKAIERNINKVWIASDN 268 (403)
T ss_pred HHHHHHHHHhCCCeEEEEECc
Confidence 677777888788888888665
No 282
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=32.03 E-value=95 Score=19.73 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=15.8
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccC
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRL 68 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~ 68 (179)
+..|++++|.+.+.+........++...
T Consensus 60 ~~~iiiatD~D~EGe~Ia~~i~~~~~~~ 87 (100)
T PF01751_consen 60 ADEIIIATDPDREGELIAWEIIELLGKN 87 (100)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHHHHH
T ss_pred ccEeeecCCCChHHHHHHHHHHHHHhHh
Confidence 4566666666666666555555555443
No 283
>PF13155 Toprim_2: Toprim-like
Probab=32.01 E-value=1.1e+02 Score=19.02 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=16.0
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhcc
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCR 67 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~ 67 (179)
++|.+++|.++....+.+........
T Consensus 48 ~~i~l~~DnD~aG~~~~~~~~~~l~~ 73 (96)
T PF13155_consen 48 KKIVLAFDNDEAGRKAAEKLQKELKE 73 (96)
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 56677777666666666655555444
No 284
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=32.00 E-value=2.4e+02 Score=21.82 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=33.7
Q ss_pred hhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC---CCccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
...|++++. +..+ . +..+..+ +|.+++|+..- +..-.. .|+..-.++ ++.. +||+++-.
T Consensus 131 ~~~GI~vtl-i~Ds-a---~~~~m~~--vd~VlvGAd~V~~nG~v~nk-vGT~~~Al~A~~~~-vPv~V~~~ 193 (253)
T PRK06372 131 VKSGIDVVL-LTDA-S---MCEAVLN--VDAVIVGSDSVLYDGGLIHK-NGTFPLALCARYLK-KPFYSLTI 193 (253)
T ss_pred HHCCCCEEE-Eehh-H---HHHHHHh--CCEEEECccEEecCCCEeeh-hhHHHHHHHHHHcC-CCEEEEee
Confidence 445787753 2222 2 2222334 99999999863 222222 366555555 5556 99998854
No 285
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=31.68 E-value=3.2e+02 Score=23.12 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=25.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccC-----CCEEEEEEEec
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRL-----ADTIHLVHAVS 79 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~-----~~~l~~v~v~~ 79 (179)
..++|++.+.+.|..++..+....... ...+++++...
T Consensus 14 ~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DT 56 (447)
T TIGR03183 14 IPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDT 56 (447)
T ss_pred CceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcC
Confidence 457899999999999888776544322 13466665533
No 286
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=31.41 E-value=1.5e+02 Score=21.08 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=30.4
Q ss_pred hhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCC----ccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGL----IQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~----~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
+..+++.-+-+...++.+....+++++++.++-++...... ...-.+-..-+.|++... -||||.=..+
T Consensus 29 ~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n-~PvLiHC~~G 101 (164)
T PF03162_consen 29 ERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRN-YPVLIHCNHG 101 (164)
T ss_dssp HHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG--SEEEE-SSS
T ss_pred HHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCC-CCEEEEeCCC
Confidence 33456655444444566777789999999999999775433 111111122234566677 8999875433
No 287
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=31.28 E-value=1.4e+02 Score=19.06 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+++.+.|++++.+++. .++.+.. ...-+++....+ +||+.++..
T Consensus 51 ~~addci~~~~~~~~~--~~VaT~D---------~~Lr~~lr~~~G-vPvi~l~~~ 94 (101)
T PF04900_consen 51 GSADDCILDLAGKNNK--YIVATQD---------KELRRRLRKIPG-VPVIYLRRN 94 (101)
T ss_pred cCHHHHHHHHhccCCe--EEEEecC---------HHHHHHHhcCCC-CCEEEEECC
Confidence 5789999999988777 5555443 233455554667 999998743
No 288
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=31.09 E-value=2e+02 Score=20.50 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
+..+.|++..+..++|+|++|-.. +-++.+ ..+..++.+ .+|.+.
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~--PkQE~~----~~~~~~~l~-~~v~i~ 132 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGA--PKQERW----IARHRQRLP-AGVIIG 132 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCC--CHHHHH----HHHHHHHCC-CCEEEE
Confidence 468899999999999999999663 223222 344555666 665543
No 289
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=31.00 E-value=1e+02 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=24.0
Q ss_pred CcchHHHHHHHHHHhccC-CCEEEEEEEec
Q 030298 51 GPNSKHAFDWALIHLCRL-ADTIHLVHAVS 79 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~-~~~l~~v~v~~ 79 (179)
...+++.+++|.++|+.+ ..+++.+|=..
T Consensus 155 r~~~eRI~r~AFe~A~~R~~kkvTsv~KaN 184 (348)
T COG0473 155 RKGSERIARFAFELARKRGRKKVTSVHKAN 184 (348)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEehhh
Confidence 366889999999999998 57899998544
No 290
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=30.94 E-value=1.7e+02 Score=22.01 Aligned_cols=89 Identities=18% Similarity=0.191 Sum_probs=40.6
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHH-HHHHHHHHHHHHHHhhhcCceeEEEEec---CCh
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVY-DMSQGLMEKLAIEAMDVAMVRTKARIVE---GDA 118 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~---g~~ 118 (179)
++++-+.+.+.|--|+..|.+- .. -..+++..+........ ....+.+.. ..+..|++....-.. ++-
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~---~~-v~~L~t~~~~~~~s~~~H~~~~~~~~~----qA~algipl~~~~~~g~~~~~ 73 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ---HE-VVCLLTMVPEEEDSYMFHGVNIELIEA----QAEALGIPLIEIPTSGDEEDY 73 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT----E-EEEEEEEEESTTT-SSS-STTGTCHHH----HHHHHT--EEEEEE---CCCH
T ss_pred cEEEEEcCcHHHHHHHHHHHHh---CC-ccEEEEeccCCCCcccccccCHHHHHH----HHHHCCCCEEEEEccCccchh
Confidence 4566688888888888777555 11 23444444433221111 111112222 222234544333333 345
Q ss_pred HHHHHHHHHHcCCcEEEEeeC
Q 030298 119 AKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.+.+..++.+++.+|.|.=
T Consensus 74 ~~~l~~~l~~~~v~~vv~GdI 94 (218)
T PF01902_consen 74 VEDLKEALKELKVEAVVFGDI 94 (218)
T ss_dssp HHHHHHHHCTC--SEEE--TT
T ss_pred hHHHHHHHHHcCCCEEEECcC
Confidence 677777778888888888864
No 291
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=30.94 E-value=67 Score=26.94 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=28.0
Q ss_pred C-ChHHHHHHH---H-HHcCCcEEEEeeCCCCCccc-cccCc-hhHHHHhcCCCCcEEE
Q 030298 116 G-DAAKVICKE---A-ERLKPAAVVIGSRGRGLIQS-VLQGS-VGEYCLHHCKTAPIIV 167 (179)
Q Consensus 116 g-~~~~~I~~~---a-~~~~~dliV~G~~~~~~~~~-~~~gs-~~~~ll~~~~~~pVlv 167 (179)
| +....|++. + ...++|+||+|..|.+ ++. |.|.. ...+-+..+. +||+-
T Consensus 174 G~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-iEDLW~FNdE~vaRAi~~s~-iPvIS 230 (440)
T COG1570 174 GEGAAEEIVEAIERANQRGDVDVLIVARGGGS-IEDLWAFNDEIVARAIAASR-IPVIS 230 (440)
T ss_pred CCCcHHHHHHHHHHhhccCCCCEEEEecCcch-HHHHhccChHHHHHHHHhCC-CCeEe
Confidence 5 344555443 3 3445999999966544 343 33433 2333445677 88764
No 292
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=30.58 E-value=2.1e+02 Score=23.71 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
.++|+++.|++.....+...++..+...+..+.++..
T Consensus 300 ~~~vvl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~~l 336 (415)
T TIGR01391 300 ADEIILCFDGDKAGRKAALRAIELLLPLGINVKVIKL 336 (415)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 3589999999998888888887887776766666543
No 293
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=30.51 E-value=1.5e+02 Score=22.29 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHcCCcEEEEee
Q 030298 118 AAKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~ 138 (179)
..+.+++.+++.++|+||+.-
T Consensus 19 ~le~l~~~~~~~~~D~vv~~G 39 (224)
T cd07388 19 ALEKLVGLAPETGADAIVLIG 39 (224)
T ss_pred HHHHHHHHHhhcCCCEEEECC
Confidence 356666666666777777663
No 294
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=30.35 E-value=2.6e+02 Score=21.69 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHcC-CcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 118 AAKVICKEAERLK-PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 118 ~~~~I~~~a~~~~-~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
..+..++.+...+ +|-||++-.+.+....+ +....+-...++.||++=
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~TG~~~d~---~~l~~vr~~~~~~Pvllg 206 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKTTGTEVDL---ELLKLAKETVKDTPVLAG 206 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCCCCCCCCH---HHHHHHHhccCCCeEEEE
Confidence 3444454444444 99999987654332211 222333332332787764
No 295
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=30.26 E-value=2.5e+02 Score=22.06 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcCceeE-EEEecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 93 LMEKLAIEAMDVAMVRTK-ARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.++.+++. -++.++++. +.+.+..-.+.|.++.+++.+|+||+.-+.
T Consensus 116 YL~~Cl~~-Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 116 YLRKCLKL-YKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHH-HHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 44444333 344456655 445556788999999999999999998653
No 296
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=30.18 E-value=1.6e+02 Score=21.54 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=17.9
Q ss_pred CCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 130 ~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
++|++|+-..+ +.......+-....++.... +||++|-
T Consensus 103 ~~D~viIEg~g-g~~~~~~~~~~~adl~~~l~-~pvilV~ 140 (222)
T PRK00090 103 QYDLVLVEGAG-GLLVPLTEDLTLADLAKQLQ-LPVILVV 140 (222)
T ss_pred hCCEEEEECCC-ceeccCCCCCcHHHHHHHhC-CCEEEEE
Confidence 46766666443 11112222223344555566 6666553
No 297
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=30.09 E-value=3e+02 Score=22.36 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=55.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV 121 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (179)
+..++-+-+|..+...-+.+.........++.++|...... +++ ........++ +++.-. .+.
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~-----------~~~-~~~~~~~~~~-~~v~~f----~~d 245 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKND-----------LEE-LKSAYNELGV-VRVLPF----IDD 245 (357)
T ss_pred CcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcch-----------HHH-HHHHHhhcCc-EEEeeH----Hhh
Confidence 55666677777777755555555544444788888766531 111 1122222233 322222 222
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+..+-+. +||+|-= .| ++|..+++. .. .|+++||....
T Consensus 246 m~~~~~~--ADLvIsR-aG---------a~Ti~E~~a-~g-~P~IliP~p~~ 283 (357)
T COG0707 246 MAALLAA--ADLVISR-AG---------ALTIAELLA-LG-VPAILVPYPPG 283 (357)
T ss_pred HHHHHHh--ccEEEeC-Cc---------ccHHHHHHH-hC-CCEEEeCCCCC
Confidence 4444444 7776643 32 355566655 67 89999998665
No 298
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=30.09 E-value=3.2e+02 Score=22.67 Aligned_cols=37 Identities=8% Similarity=-0.093 Sum_probs=28.1
Q ss_pred eEEE-EecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 43 DILI-AVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 43 ~Ilv-~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
-+++ -.+..+++.+..++|.++|...+.+|+++|=..
T Consensus 166 gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaN 203 (393)
T PLN00096 166 NAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKT 203 (393)
T ss_pred eEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCcc
Confidence 4544 446667889999999999988877888887543
No 299
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=30.05 E-value=61 Score=22.56 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.9
Q ss_pred EEEEeeC
Q 030298 133 AVVIGSR 139 (179)
Q Consensus 133 liV~G~~ 139 (179)
.+++|.+
T Consensus 70 ~vi~G~S 76 (154)
T PF03575_consen 70 GVIIGTS 76 (154)
T ss_dssp SEEEEET
T ss_pred CEEEEEC
Confidence 5555554
No 300
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.04 E-value=1.2e+02 Score=20.64 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV 75 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v 75 (179)
...-+|+.+..|-.+...++ |+..|+..|..+..+
T Consensus 102 ~~gDvli~iS~SG~s~~vi~-a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIE-AAEEAKERGMKVIAL 136 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHH-HHHHHHHTT-EEEEE
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHHCCCEEEEE
Confidence 44778899988888877777 447788878776655
No 301
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.02 E-value=2e+02 Score=20.32 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhccCCCEEEEEEEe--cCCc---hhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh---H---HHHH
Q 030298 55 KHAFDWALIHLCRLADTIHLVHAV--SSVQ---NQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA---A---KVIC 123 (179)
Q Consensus 55 ~~al~~a~~la~~~~~~l~~v~v~--~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~---~---~~I~ 123 (179)
..-+..++.+|+..|++...++.. .... .....+...+.++.+.+. .+..|+.+-.....+.. . +.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEI-AEEYGVRIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHH-HHHHTSEEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhh-hhhhcceEEEecccCccccchhhHHHHH
Confidence 567888889999999999888854 1211 122234444555554433 34446665554444332 2 8888
Q ss_pred HHHHHcCCcE
Q 030298 124 KEAERLKPAA 133 (179)
Q Consensus 124 ~~a~~~~~dl 133 (179)
++.+..+.+-
T Consensus 149 ~~l~~~~~~~ 158 (213)
T PF01261_consen 149 RLLEEVDSPN 158 (213)
T ss_dssp HHHHHHTTTT
T ss_pred HHHhhcCCCc
Confidence 8888866543
No 302
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=29.88 E-value=2.1e+02 Score=20.46 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhH-HHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIV-YDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
..-...++.|..++. ++++.-...+...... .++..+.++ +...+ --++++....| =++++|++++
T Consensus 16 nGHlDii~RA~~~Fd----~viVaV~~np~K~plFsleER~~l~~----~~~~~-l~nV~V~~f~~----Llvd~ak~~~ 82 (159)
T COG0669 16 NGHLDIIKRASALFD----EVIVAVAINPSKKPLFSLEERVELIR----EATKH-LPNVEVVGFSG----LLVDYAKKLG 82 (159)
T ss_pred cchHHHHHHHHHhcc----EEEEEEEeCCCcCCCcCHHHHHHHHH----HHhcC-CCceEEEeccc----HHHHHHHHcC
Confidence 344667777777664 4444433333322222 222222222 22221 12343333333 6789999999
Q ss_pred CcEEEEeeCCCCCc
Q 030298 131 PAAVVIGSRGRGLI 144 (179)
Q Consensus 131 ~dliV~G~~~~~~~ 144 (179)
+..||=|-+.-+-+
T Consensus 83 a~~ivRGLR~~sDf 96 (159)
T COG0669 83 ATVLVRGLRAVSDF 96 (159)
T ss_pred CCEEEEeccccchH
Confidence 99999999875544
No 303
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.81 E-value=2e+02 Score=20.09 Aligned_cols=51 Identities=20% Similarity=0.099 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCC-CccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRG-LIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~-~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++..+.+++++|-|||=.+... .+.+--.|=--+.+++-.++|+|-++.+
T Consensus 51 ~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga~~FKmEaaIQL~~~~~V~lvs~ 102 (138)
T PF11215_consen 51 FTFAKLMEDYKVDKVVIKERATKGKFAGGAVGFKMEAAIQLIDDVEVELVSP 102 (138)
T ss_pred HHHHHHHHHcCCCEEEEEecccCCCccCCchhHHHHHHHHhcCCCcEEEECH
Confidence 35667788899999998766421 1222111123355555554488888765
No 304
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=29.75 E-value=2.9e+02 Score=23.65 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=32.7
Q ss_pred eEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcE
Q 030298 109 TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPI 165 (179)
Q Consensus 109 ~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pV 165 (179)
+.+.+..+.....|.--+.+.++|+|++.-...+. |-.....++++. +|.
T Consensus 306 I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGT------GAsP~~~~~~~G-iP~ 355 (485)
T COG0069 306 ISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGT------GASPLTSIDHAG-IPW 355 (485)
T ss_pred EEEEEecccchHHHHhhhhhccCCEEEEcCCCCcC------CCCcHhHhhcCC-chH
Confidence 55556667777777776777899999998664333 233344555555 553
No 305
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=29.65 E-value=3.2e+02 Score=23.13 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=24.4
Q ss_pred eeEEEEecCChHHHHHHH--HHHcCCcEEEEeeC-CCCCccccccCchh
Q 030298 108 RTKARIVEGDAAKVICKE--AERLKPAAVVIGSR-GRGLIQSVLQGSVG 153 (179)
Q Consensus 108 ~~~~~~~~g~~~~~I~~~--a~~~~~dliV~G~~-~~~~~~~~~~gs~~ 153 (179)
-+.+.+..|+.-+.|.+. |..+++|.|.+=++ +.+-+.....|.+.
T Consensus 148 ~iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~ 196 (509)
T PF09043_consen 148 VIYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGATT 196 (509)
T ss_dssp EEEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--S
T ss_pred eEEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCCC
Confidence 344556679999988865 78999999977654 33333333344343
No 306
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=29.58 E-value=1.3e+02 Score=21.74 Aligned_cols=7 Identities=14% Similarity=0.828 Sum_probs=3.0
Q ss_pred CcEEEEc
Q 030298 163 APIIVVP 169 (179)
Q Consensus 163 ~pVlvv~ 169 (179)
+|+++++
T Consensus 77 ~~v~~~~ 83 (223)
T cd00840 77 IPVFIIA 83 (223)
T ss_pred CCEEEec
Confidence 4444443
No 307
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.49 E-value=1.4e+02 Score=22.20 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
++-....|++++..|-++...+..+ ..+++.+.++..+...+.+
T Consensus 82 g~i~~~DvviaiS~SGeT~el~~~~-~~aK~~g~~liaiT~~~~S 125 (202)
T COG0794 82 GMITPGDVVIAISGSGETKELLNLA-PKAKRLGAKLIAITSNPDS 125 (202)
T ss_pred cCCCCCCEEEEEeCCCcHHHHHHHH-HHHHHcCCcEEEEeCCCCC
Confidence 3445578999999999998877654 8899999999998876543
No 308
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=29.48 E-value=2.2e+02 Score=20.65 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+.|+++.++...|-+++=--..+....-.--..-.+++.+-. +.||
T Consensus 40 G~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~-IeVL 86 (180)
T PF14097_consen 40 GEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD-IEVL 86 (180)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC-ceEE
Confidence 6778888777666655543222222111111123355556555 7776
No 309
>PRK10481 hypothetical protein; Provisional
Probab=29.38 E-value=2.5e+02 Score=21.24 Aligned_cols=55 Identities=5% Similarity=0.086 Sum_probs=35.1
Q ss_pred CceeEEEEec--CChHHHHHHHHH---HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 106 MVRTKARIVE--GDAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 106 ~~~~~~~~~~--g~~~~~I~~~a~---~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
|+++...... ....+.+.+.++ ..++|+||++--+.+. .....+-+..+ .||+..
T Consensus 153 G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg-~PVI~~ 212 (224)
T PRK10481 153 QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALD-VPVLLS 212 (224)
T ss_pred CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHC-cCEEcH
Confidence 6666544322 134456766666 6789999999776543 22455667777 998753
No 310
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.36 E-value=2.7e+02 Score=21.60 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchh-hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
++...++++|.++.. .+.++...+...+.... .+.....+.++. +.+..+..|+.+-+.+..-...+.+.+ .
T Consensus 38 e~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~-l~~~~~~~Gl~~~te~~d~~~~~~l~~----~- 110 (266)
T PRK13398 38 ESEEQMVKVAEKLKE-LGVHMLRGGAFKPRTSPYSFQGLGEEGLKI-LKEVGDKYNLPVVTEVMDTRDVEEVAD----Y- 110 (266)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEEeeecCCCCCCccCCcHHHHHHH-HHHHHHHcCCCEEEeeCChhhHHHHHH----h-
Confidence 456677888877776 57777777776654332 112223444444 334456678887766655555444433 3
Q ss_pred CcEEEEeeCC
Q 030298 131 PAAVVIGSRG 140 (179)
Q Consensus 131 ~dliV~G~~~ 140 (179)
+|++-||++.
T Consensus 111 vd~~kIga~~ 120 (266)
T PRK13398 111 ADMLQIGSRN 120 (266)
T ss_pred CCEEEECccc
Confidence 6888888764
No 311
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=29.27 E-value=2.2e+02 Score=20.40 Aligned_cols=127 Identities=14% Similarity=0.039 Sum_probs=65.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCc--------------------------hhhHHHHHHHHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ--------------------------NQIVYDMSQGLME 95 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~--------------------------~~~~~~~~~~~l~ 95 (179)
|.|.+.+|+.+.... ...++.+.++++.+.+++-+-.... .....+...+.+.
T Consensus 6 k~V~LTFDDgp~~~~-t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~~~Gheig~Ht~~H~~~~~~~~~~~~~ei~ 84 (191)
T TIGR02764 6 KKIALTFDISWGNDY-TEPILDTLKEYDVKATFFLSGSWAERHPELVKEIVKDGHEIGSHGYRHKNYTTLEDEKIKKDIL 84 (191)
T ss_pred CEEEEEEECCCCccc-HHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHHhCCCEEEECCcCCCCcccCCHHHHHHHHH
Confidence 789999998876432 3445566777777766654422100 0001123333333
Q ss_pred HHHHHHhhhcCceeE-EEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 96 KLAIEAMDVAMVRTK-ARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
...+...+..|.... ++.-.|.....+++.+++.++..+....... .+...-.....++++.+...-.|++++.
T Consensus 85 ~~~~~l~~~~g~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~-D~~~~~~~~i~~~~~~~~~~g~Iil~Hd 159 (191)
T TIGR02764 85 RAQEIIEKLTGKKPTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSR-DWKNPGVESIVDRVVKNTKPGDIILLHA 159 (191)
T ss_pred HHHHHHHHHhCCCCCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCC-ccCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 333333333344332 3334477788899999997777544333222 1221111223345555555466888874
No 312
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=29.27 E-value=2.9e+02 Score=22.03 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.6
Q ss_pred CC--hHHHHHHHHHHcCCcEEEEeeCCCC--------CccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 116 GD--AAKVICKEAERLKPAAVVIGSRGRG--------LIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 116 g~--~~~~I~~~a~~~~~dliV~G~~~~~--------~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
|+ -++.+.+.|++.++-+|+=+++.-+ .-..|+.||--..++..+| |-||.++.
T Consensus 170 GNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~P-iGvl~~~e 233 (382)
T COG1103 170 GNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAP-IGVLAMSE 233 (382)
T ss_pred CCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCC-eeEEeehh
Confidence 55 3778999999999999997775432 2345778888888888888 99987754
No 313
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=29.16 E-value=3.4e+02 Score=22.65 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
....+++.+++.+.+...+|+.+
T Consensus 244 ~~~~ll~~a~~~g~~~~wigs~~ 266 (458)
T cd06375 244 DARELLAAAKRLNASFTWVASDG 266 (458)
T ss_pred HHHHHHHHHHHcCCcEEEEEecc
Confidence 44555566666666666666543
No 314
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=29.12 E-value=3.6e+02 Score=22.89 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (179)
..++|+|-.|.+...-.+-........+.|.++++.....-.. .. . ..+ .....+.+.-+.+--|...
T Consensus 35 ~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~-~~-g---------~~~-~~~~~~~~liItvD~G~~~ 102 (491)
T COG0608 35 KGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEE-GY-G---------AIR-KLKEEGADLIITVDNGSGS 102 (491)
T ss_pred cCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccc-cc-h---------HHH-HHHhcCCCEEEEECCCccc
Confidence 4488999888876666655556666666676666554322111 11 0 112 1222345555555557776
Q ss_pred HHHHHHHHHcCCcEEEEeeC
Q 030298 120 KVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~ 139 (179)
..-+.++++.+.|.||...|
T Consensus 103 ~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 103 LEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred HHHHHHHHhCCCcEEEECCC
Confidence 67777777888999999977
No 315
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=29.11 E-value=41 Score=21.35 Aligned_cols=44 Identities=11% Similarity=-0.055 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+.+..++.++||||.-....+.... --|...++++-... +|.+
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~-Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYN-IPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTT-SHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcC-CCCc
Confidence 49999999999999988765322221 12444556666666 6653
No 316
>PLN02476 O-methyltransferase
Probab=28.84 E-value=1.8e+02 Score=22.76 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=30.1
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHHHH---HcCCcEEEEeeCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKEAE---RLKPAAVVIGSRG 140 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~---~~~~dliV~G~~~ 140 (179)
++.++..|+.-.+.+..|+..+.|-++.. ...+|+|++.+.+
T Consensus 160 r~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 160 KRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCH
Confidence 34445567766677788999888877643 2469999999875
No 317
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.80 E-value=1.6e+02 Score=23.25 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCcE-----EEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 118 AAKVICKEAERLKPAA-----VVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dl-----iV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
...+++++.+.+++++ +|+|++. +.|-....+|.+.. +.|.+++....+
T Consensus 142 Tp~avi~ll~~y~i~l~Gk~vvViGrS~-------iVGkPla~lL~~~~-atVt~chs~T~~ 195 (284)
T PRK14177 142 TPYGMVLLLKEYGIDVTGKNAVVVGRSP-------ILGKPMAMLLTEMN-ATVTLCHSKTQN 195 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCC-------cchHHHHHHHHHCC-CEEEEeCCCCCC
Confidence 3678888888887755 9999664 33555555666677 899998876543
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=28.77 E-value=2.1e+02 Score=20.00 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=41.6
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--- 120 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--- 120 (179)
++++-.++-.+..+...+..+++. +.++.++...... . ...+.+. ...+..++.+.......++.+
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~---~---~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~ 72 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYR---P---AAIEQLR----VLGEQVGVPVFEEGEGKDPVSIAK 72 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCC---h---HHHHHHH----HhcccCCeEEEecCCCCCHHHHHH
Confidence 344445555666666767666654 5555555542211 0 0011111 112223344322111123332
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCc
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLI 144 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~ 144 (179)
..+..+...+.|++++.+.+....
T Consensus 73 ~~~~~~~~~~~d~viiDt~g~~~~ 96 (173)
T cd03115 73 RAIEHAREENFDVVIVDTAGRLQI 96 (173)
T ss_pred HHHHHHHhCCCCEEEEECcccchh
Confidence 233445566788888888765443
No 319
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=28.77 E-value=1.9e+02 Score=22.84 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCc-c-ccccCchhHHHHhcC--CCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLI-Q-SVLQGSVGEYCLHHC--KTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~-~-~~~~gs~~~~ll~~~--~~~pVlv 167 (179)
-+...++++.|++.+..+|+.-+.+.-.. . -..+......+++.+ . +||.+
T Consensus 28 ~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~-vPV~l 82 (293)
T PRK07315 28 LEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGIT-VPVAI 82 (293)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCC-CcEEE
Confidence 36788899999998899888876653222 2 122345566777777 5 67764
No 320
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.76 E-value=3.1e+02 Score=21.97 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=27.7
Q ss_pred hhhcCceeEEEEecCCh----HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDA----AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++..++.+.+....+++ .+.+.+.++++++|+|| |-.|.+.+ .++..+..... .|++.||-
T Consensus 45 L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~II-avGGGS~i------D~aK~ia~~~~-~P~iaIPT 109 (351)
T cd08170 45 LAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVI-GIGGGKTL------DTAKAVADYLG-APVVIVPT 109 (351)
T ss_pred HHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEE-EecCchhh------HHHHHHHHHcC-CCEEEeCC
Confidence 34444554333333432 44555556666777533 33332221 22333333345 67777664
No 321
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=28.66 E-value=53 Score=28.37 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHcCCcEEEEee
Q 030298 118 AAKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~ 138 (179)
..+.|+..|++.++|||++|.
T Consensus 40 tFeEIl~iA~e~~VDmiLlGG 60 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGG 60 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecC
Confidence 578999999999999999996
No 322
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.54 E-value=1e+02 Score=23.93 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
..+.++|+++.+......++.+ +.|+..|+++..+.-.
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~a-~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEAA-ELAKERGAKVIAITDS 213 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHHH-HHHHHCCCcEEEEcCC
Confidence 3467999999999998888855 8888888888777654
No 323
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.50 E-value=1.4e+02 Score=19.63 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=20.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
+.+++.+..+..+...++.+ +.|+..|+++.++.-
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~-~~a~~~g~~vi~iT~ 82 (128)
T cd05014 48 GDVVIAISNSGETDELLNLL-PHLKRRGAPIIAITG 82 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHH-HHHHHCCCeEEEEeC
Confidence 45666666666666655544 445555666555543
No 324
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.47 E-value=1.5e+02 Score=22.93 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=26.8
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCC-CEEEEE
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLV 75 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~-~~l~~v 75 (179)
....-+++.+|+|..+....+...+|+...+ .++.++
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V 191 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVV 191 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 4456778888888888888888888888777 454444
No 325
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=28.46 E-value=2.6e+02 Score=21.16 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=24.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
++++|.+.+.-.|..++.++.+ .+.+++.+++...+
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~----~~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQ----QYDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHh----cCCeEEEEEEEeCC
Confidence 5688888888777777766633 13467777776543
No 326
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=28.45 E-value=2.2e+02 Score=22.46 Aligned_cols=51 Identities=10% Similarity=0.071 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCc-cc-cccCchhHHHHhcC--CCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLI-QS-VLQGSVGEYCLHHC--KTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~-~~-~~~gs~~~~ll~~~--~~~pVlv 167 (179)
-+...++++.|++.+.-+|+..+.+.-.. .+ ..+.........++ . +||.+
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~-VPV~l 82 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYG-VPVAL 82 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCC-CcEEE
Confidence 47789999999999999999877654322 21 23456677778888 7 88875
No 327
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=28.29 E-value=2.8e+02 Score=22.44 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHhccCCC-EEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLAD-TIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~-~l~~v~v~~ 79 (179)
..+++.+++|.++|...+. +++++|=..
T Consensus 145 ~~~eRi~r~Af~~A~~r~~k~Vt~v~KaN 173 (333)
T TIGR00175 145 DKSERIARYAFEYARKNGRKKVTAVHKAN 173 (333)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 5678889999999988764 588887533
No 328
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.28 E-value=3.3e+02 Score=22.24 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=47.7
Q ss_pred HHHHHHhhhcCceeEEEEecC-ChHHHHHHHHHHcCCcEEEEeeCCCCC-ccccccC----------chhHHHHhcCCCC
Q 030298 96 KLAIEAMDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIGSRGRGL-IQSVLQG----------SVGEYCLHHCKTA 163 (179)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~-~~~~~~g----------s~~~~ll~~~~~~ 163 (179)
++.+.+.+..++.+-.....| ...+.+++...+.+.|-+=++-+...+ ..+.+.| .+++.++. +. +
T Consensus 179 ~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~-a~-i 256 (414)
T COG2100 179 DLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN-AG-I 256 (414)
T ss_pred HHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh-CC-C
Confidence 334444455667666666666 567888888888888888888776543 3344445 35565555 88 9
Q ss_pred cEEEEc
Q 030298 164 PIIVVP 169 (179)
Q Consensus 164 pVlvv~ 169 (179)
.||+-|
T Consensus 257 dvlIaP 262 (414)
T COG2100 257 DVLIAP 262 (414)
T ss_pred CEEEee
Confidence 998765
No 329
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.24 E-value=2.6e+02 Score=20.94 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=51.3
Q ss_pred HHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEe
Q 030298 58 FDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIG 137 (179)
Q Consensus 58 l~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G 137 (179)
.+|.-.+|+. ++.+.-+|+-..+. ..+..+. .+..|..+-..+.-|.+.+.|..++.. .|++.+=
T Consensus 77 eq~V~~~a~a-gas~~tfH~E~~q~-----------~~~lv~~-ir~~Gmk~G~alkPgT~Ve~~~~~~~~--~D~vLvM 141 (224)
T KOG3111|consen 77 EQWVDQMAKA-GASLFTFHYEATQK-----------PAELVEK-IREKGMKVGLALKPGTPVEDLEPLAEH--VDMVLVM 141 (224)
T ss_pred HHHHHHHHhc-CcceEEEEEeeccC-----------HHHHHHH-HHHcCCeeeEEeCCCCcHHHHHHhhcc--ccEEEEE
Confidence 4566666664 56666666543221 1222333 344578888888889999999999997 8887766
Q ss_pred eCCCCCccccccCch
Q 030298 138 SRGRGLIQSVLQGSV 152 (179)
Q Consensus 138 ~~~~~~~~~~~~gs~ 152 (179)
+-..++-.+.|.-+.
T Consensus 142 tVePGFGGQkFme~m 156 (224)
T KOG3111|consen 142 TVEPGFGGQKFMEDM 156 (224)
T ss_pred EecCCCchhhhHHHH
Confidence 665666555554443
No 330
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=28.20 E-value=2.3e+02 Score=23.15 Aligned_cols=28 Identities=4% Similarity=0.011 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
..+++.+++|.++|+.+..+++++|=..
T Consensus 164 ~~~eRi~r~Af~~A~~rr~kVt~v~KaN 191 (352)
T TIGR02089 164 KGVERIMRFAFELAQKRRKHLTSATKSN 191 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 5678899999999988756788887543
No 331
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=28.14 E-value=1.8e+02 Score=21.43 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=9.6
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 030298 155 YCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 155 ~ll~~~~~~pVlvv~~~~ 172 (179)
+++...+ +|++.++..+
T Consensus 64 ~~l~~~~-~p~~~v~GNH 80 (240)
T cd07402 64 ELLAALP-IPVYLLPGNH 80 (240)
T ss_pred HHHhhcC-CCEEEeCCCC
Confidence 3444556 6766666544
No 332
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=27.96 E-value=2.7e+02 Score=21.23 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=30.7
Q ss_pred EecCC---hHHHHHHHHHHcCCcE-EEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 113 IVEGD---AAKVICKEAERLKPAA-VVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 113 ~~~g~---~~~~I~~~a~~~~~dl-iV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
+..|+ +.+.+.+.+.+ +|+ ||||++..-..- .+... ..+... .++++|......
T Consensus 154 V~FGE~~~~~~~~~~~~~~--~DlllviGTSl~V~pa----~~l~~-~a~~~g-~~vi~IN~~~~~ 211 (242)
T PTZ00408 154 VWFGEMPLYMDEIESVMSK--TDLFVAVGTSGNVYPA----AGFVG-RAQFYG-ATTLELNLEEGT 211 (242)
T ss_pred EEcCCCCCcHHHHHHHHHh--CCEEEEEccCCccccH----HHHHH-HHHHcC-CeEEEECCCCCC
Confidence 34465 34556666655 887 778877432111 22222 345567 899999765533
No 333
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=27.72 E-value=1.8e+02 Score=19.86 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=10.8
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHH
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAE 127 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~ 127 (179)
++..|..+.+........+.|=|+..
T Consensus 98 L~~~G~~v~~~~w~~~~~KGiDD~l~ 123 (130)
T PF12965_consen 98 LKEAGCKVKIITWPPGEGKGIDDLLA 123 (130)
T ss_pred HHHCCCEEEEEEeCCCCCCCHhHHHH
Confidence 34445555443333333334444433
No 334
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=27.63 E-value=1.1e+02 Score=22.23 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=26.0
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
+|++++.++-.+-.+.+.+..|.+ .|.+++++-
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~-~g~~V~vv~ 33 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKE-AGVEVHLVI 33 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 589999999999999888877754 477766664
No 335
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.57 E-value=3.8e+02 Score=22.63 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=47.0
Q ss_pred EEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHH
Q 030298 45 LIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICK 124 (179)
Q Consensus 45 lv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~ 124 (179)
+++..++-.+..+...|..+....|.++.++..... .......+. ...+..+++... ..+ ...+.+
T Consensus 228 lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~------R~aA~eQLk----~yAe~lgvp~~~---~~~-~~~l~~ 293 (432)
T PRK12724 228 FVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY------RIAAIEQLK----RYADTMGMPFYP---VKD-IKKFKE 293 (432)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch------hhhHHHHHH----HHHHhcCCCeee---hHH-HHHHHH
Confidence 334456666777778777665555667776654321 111122222 223334454321 112 345565
Q ss_pred HHHHcCCcEEEEeeCCCCCc
Q 030298 125 EAERLKPAAVVIGSRGRGLI 144 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~~ 144 (179)
.++..++|+|++.+.++...
T Consensus 294 ~l~~~~~D~VLIDTaGr~~r 313 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHR 313 (432)
T ss_pred HHHhCCCCEEEEeCCCCCcc
Confidence 66667899999998776543
No 336
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=27.55 E-value=1.8e+02 Score=22.04 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
...+++.+.+.+.|.|++|.+..-.... ...+.. .+++.. .|+++.|....
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v~-~ik~~~-lPvilfp~~~~ 66 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLIE-ALRRYG-LPIILFPSNPT 66 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHHH-HHhccC-CCEEEeCCCcc
Confidence 4457777888899999999663211121 122333 446678 99999986543
No 337
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.48 E-value=1.3e+02 Score=21.30 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=25.9
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
.+.++|.+..+..+...++.+ +.|+..|+++..+.-.
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~-~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKAL-EAAKERGMKTIALTGR 137 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHH-HHHHHCCCEEEEEeCC
Confidence 366888888887777777644 6777777776666543
No 338
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=27.06 E-value=2.1e+02 Score=19.61 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=4.4
Q ss_pred CcEEEEcC
Q 030298 163 APIIVVPG 170 (179)
Q Consensus 163 ~pVlvv~~ 170 (179)
+||+.+|.
T Consensus 122 ~~v~~LPG 129 (144)
T TIGR00177 122 TLIFGLPG 129 (144)
T ss_pred EEEEECCC
Confidence 55555554
No 339
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=26.90 E-value=1.4e+02 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=23.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
+.++|.++.+......++.+ +.|+..|+++.++.-
T Consensus 73 ~Dv~I~iS~sG~t~~~i~~~-~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 73 GDLLIAISGSGETESLVTVA-KKAKEIGATVAAITT 107 (179)
T ss_pred CCEEEEEeCCCCcHHHHHHH-HHHHHCCCeEEEEEC
Confidence 56777777777777766644 666767777666654
No 340
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.89 E-value=1.7e+02 Score=23.74 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeC-CCCCccc----------------cccCchhHHHHhcCCCCcEEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSR-GRGLIQS----------------VLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~~----------------~~~gs~~~~ll~~~~~~pVlvv 168 (179)
-+...++++.|++.+..+|+..+. +.-.... ..+......++.++. +||.+=
T Consensus 23 ~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-VPV~lH 91 (340)
T cd00453 23 TDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG-VPVILH 91 (340)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCC-CCEEEE
Confidence 367889999999999999998876 2211111 224556777888898 998763
No 341
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.82 E-value=2.8e+02 Score=20.98 Aligned_cols=85 Identities=11% Similarity=-0.025 Sum_probs=54.6
Q ss_pred HHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEe
Q 030298 58 FDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIG 137 (179)
Q Consensus 58 l~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G 137 (179)
-+|.-.+++. |+.+.-+|+-.. ..+.+..+. .+..|...-..+--+.+.+.+..+..+ .|+|.+=
T Consensus 74 ~~~i~~fa~a-gad~It~H~E~~-----------~~~~r~i~~-Ik~~G~kaGv~lnP~Tp~~~i~~~l~~--vD~VllM 138 (220)
T COG0036 74 DRYIEAFAKA-GADIITFHAEAT-----------EHIHRTIQL-IKELGVKAGLVLNPATPLEALEPVLDD--VDLVLLM 138 (220)
T ss_pred HHHHHHHHHh-CCCEEEEEeccC-----------cCHHHHHHH-HHHcCCeEEEEECCCCCHHHHHHHHhh--CCEEEEE
Confidence 4555555554 677777776411 111122223 233478877777779999999999999 9988766
Q ss_pred eCCCCCccccccCchhHHHH
Q 030298 138 SRGRGLIQSVLQGSVGEYCL 157 (179)
Q Consensus 138 ~~~~~~~~~~~~gs~~~~ll 157 (179)
+-..++-.+.|.-++-++|-
T Consensus 139 sVnPGfgGQ~Fi~~~l~Ki~ 158 (220)
T COG0036 139 SVNPGFGGQKFIPEVLEKIR 158 (220)
T ss_pred eECCCCcccccCHHHHHHHH
Confidence 66667766666666666553
No 342
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=26.45 E-value=2.7e+02 Score=20.52 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=10.4
Q ss_pred HHHHHHHHHcCCcEEEEe
Q 030298 120 KVICKEAERLKPAAVVIG 137 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G 137 (179)
+.|.++++..++|+||..
T Consensus 56 ~aL~~a~~~~~~DlIITT 73 (193)
T PRK09417 56 QTLIELVDEMGCDLVLTT 73 (193)
T ss_pred HHHHHHhhcCCCCEEEEC
Confidence 444444443468877776
No 343
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.40 E-value=1.4e+02 Score=21.34 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=27.0
Q ss_pred eEEEEecCChHHHHHH--HH-HHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 109 TKARIVEGDAAKVICK--EA-ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 109 ~~~~~~~g~~~~~I~~--~a-~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.++.+..++..+++-. .. ...++|.||-. |.+++.|-++.+ .||+-++.+.
T Consensus 10 ~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsR------------G~ta~~lr~~~~-iPVV~I~~s~ 63 (176)
T PF06506_consen 10 AEIDVIEASLEEAVEEARQLLESEGADVIISR------------GGTAELLRKHVS-IPVVEIPISG 63 (176)
T ss_dssp SEEEEEE--HHHHHHHHHHHHTTTT-SEEEEE------------HHHHHHHHCC-S-S-EEEE---H
T ss_pred ceEEEEEecHHHHHHHHHHhhHhcCCeEEEEC------------CHHHHHHHHhCC-CCEEEECCCH
Confidence 3444556654443332 23 45788888743 677887777777 9999887643
No 344
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=26.37 E-value=2.6e+02 Score=20.81 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
...+.+.+.+.++|.|++....+....+-..-....++.+..+ .||+..-.
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~-ipvia~GG 205 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVS-IPVIALGG 205 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCC-CCEEEECC
Confidence 3456667778899988888744332222223356677888888 99988643
No 345
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=26.20 E-value=1.4e+02 Score=20.15 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=22.7
Q ss_pred EEEEecCCcch-----HHHHHHHHHHhccCCCEEEEEEEec
Q 030298 44 ILIAVDHGPNS-----KHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 44 Ilv~vd~s~~s-----~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
|.|++|-|.+. ...+.-...+++..+.+++++.+..
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~D~ 41 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRFPAEVHVIQFDA 41 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 46777765332 2234445566677788899998754
No 346
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=26.19 E-value=2.4e+02 Score=22.97 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcC-CCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHC-KTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~-~~~pVlv 167 (179)
-....++++.|++.+.-+|+..+.+...... -++......+.+++ . +||.+
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~-VPVaL 80 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPD-IPICL 80 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCC-CcEEE
Confidence 4789999999999999999988775433222 23456677777777 5 88765
No 347
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.19 E-value=1.6e+02 Score=19.28 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=16.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV 75 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v 75 (179)
+.+++.+..+..+...++.+ +.|+..|+++..+
T Consensus 44 ~dl~I~iS~SG~t~e~i~~~-~~a~~~g~~iI~I 76 (119)
T cd05017 44 KTLVIAVSYSGNTEETLSAV-EQAKERGAKIVAI 76 (119)
T ss_pred CCEEEEEECCCCCHHHHHHH-HHHHHCCCEEEEE
Confidence 44555555555555544432 4444445444433
No 348
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=26.13 E-value=4.1e+02 Score=22.62 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.+..++..|..+. ..++..+++...... .+|+|++.-+-.+. .+. .+-.++-...+..||+++...++
T Consensus 20 l~~~L~~~G~~v~---~a~~~~~al~~i~~~-~~~lvl~Di~mp~~-~Gl---~ll~~i~~~~~~~pVI~~Tg~g~ 87 (464)
T COG2204 20 LEQALELAGYEVV---TAESAEEALEALSES-PFDLVLLDIRMPGM-DGL---ELLKEIKSRDPDLPVIVMTGHGD 87 (464)
T ss_pred HHHHHHHcCCeEE---EeCCHHHHHHHHhcC-CCCEEEEecCCCCC-chH---HHHHHHHhhCCCCCEEEEeCCCC
Confidence 4444555554432 234444444444444 67888887664321 111 23344554455588887765443
No 349
>PRK08417 dihydroorotase; Provisional
Probab=26.08 E-value=58 Score=26.56 Aligned_cols=28 Identities=0% Similarity=-0.218 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
....++..++.+|+..++++|++|+...
T Consensus 179 aE~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 179 AETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 3455789999999999999999999763
No 350
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=25.91 E-value=2.8e+02 Score=20.54 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=23.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
.++|+-+.+.-.|.- |..+..+.|.++..+|+...
T Consensus 4 gk~l~LlSGGiDSpV----Aa~lm~krG~~V~~l~f~~~ 38 (197)
T PF02568_consen 4 GKALALLSGGIDSPV----AAWLMMKRGCEVIALHFDSP 38 (197)
T ss_dssp -EEEEE-SSCCHHHH----HHHHHHCBT-EEEEEEEE-T
T ss_pred ceEEEEecCCccHHH----HHHHHHHCCCEEEEEEEECC
Confidence 678888888876665 44556667999999999743
No 351
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=25.87 E-value=1.8e+02 Score=20.24 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=9.6
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 030298 155 YCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 155 ~ll~~~~~~pVlvv~~~~ 172 (179)
+.+...+ +|+++|+..+
T Consensus 46 ~~l~~~~-~p~~~v~GNH 62 (188)
T cd07392 46 NLLLAIG-VPVLAVPGNC 62 (188)
T ss_pred HHHHhcC-CCEEEEcCCC
Confidence 3445556 6666666543
No 352
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=25.82 E-value=3.7e+02 Score=21.96 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..-...-++.+++...|.|.|.-.-. ..... .+.+++++..+ +||+++..-.
T Consensus 33 a~ng~~a~~~~~~~~PDVi~ld~emp-~mdgl---~~l~~im~~~p-~pVimvsslt 84 (350)
T COG2201 33 ARNGREAIDKVKKLKPDVITLDVEMP-VMDGL---EALRKIMRLRP-LPVIMVSSLT 84 (350)
T ss_pred cCCHHHHHHHHHhcCCCEEEEecccc-cccHH---HHHHHHhcCCC-CcEEEEeccc
Confidence 33344455677778899999997632 22222 35688899889 9999996643
No 353
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=25.75 E-value=1.6e+02 Score=22.58 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
...+++++|.||.=.+|..+.... -...+... +||+++.++.
T Consensus 184 aL~~~~~i~~lVtK~SG~~g~~eK------i~AA~~lg-i~vivI~RP~ 225 (248)
T PRK08057 184 ALLRQHRIDVVVTKNSGGAGTEAK------LEAARELG-IPVVMIARPA 225 (248)
T ss_pred HHHHHcCCCEEEEcCCCchhhHHH------HHHHHHcC-CeEEEEeCCC
Confidence 445677777777665544322222 13456667 7887775543
No 354
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=25.61 E-value=2.9e+02 Score=20.59 Aligned_cols=83 Identities=10% Similarity=-0.046 Sum_probs=43.4
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC-----C
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-----D 117 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-----~ 117 (179)
+|.|-+.++.....++-.+.+-. ..++.+.++-...... . ..+..+..|+++...-... .
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~-~l~~~i~~visn~~~~--~------------~~~~A~~~gIp~~~~~~~~~~~~~~ 65 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDG-RVNGDVVVVVTNKPGC--G------------GAEYARENGIPVLVYPKTKGEPDGL 65 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcC-CCCeEEEEEEEeCCCC--h------------HHHHHHHhCCCEEEeccccCCCccc
Confidence 35666666666666655553332 2344554443332210 0 1122333467654322111 1
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+.+++..++.++|++|+....
T Consensus 66 ~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 66 SPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred chHHHHHHHHhcCCCEEEEeCcc
Confidence 14578888899999999997653
No 355
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.57 E-value=3.1e+02 Score=21.01 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=31.1
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHHHHH----cCCcEEEEeeCCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKEAER----LKPAAVVIGSRGR 141 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~----~~~dliV~G~~~~ 141 (179)
++.++..|+.-.+.+..|+..+.|-+.... ..+|+|.+.+.+.
T Consensus 121 r~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~ 167 (247)
T PLN02589 121 LPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKD 167 (247)
T ss_pred HHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHH
Confidence 344455666666777889988888877643 5799999998754
No 356
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=25.52 E-value=1.9e+02 Score=18.61 Aligned_cols=99 Identities=11% Similarity=0.030 Sum_probs=54.2
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
+|++-+.+.. ...++..+..+... |-++.. .+. ..+.+...|+.++...........|
T Consensus 2 ~vl~s~~~~~-k~~~~~~~~~l~~~-G~~l~a---T~g-----------------T~~~l~~~gi~~~~v~~~~~~~~~i 59 (110)
T cd01424 2 TVFISVADRD-KPEAVEIAKRLAEL-GFKLVA---TEG-----------------TAKYLQEAGIPVEVVNKVSEGRPNI 59 (110)
T ss_pred eEEEEEEcCc-HhHHHHHHHHHHHC-CCEEEE---chH-----------------HHHHHHHcCCeEEEEeecCCCchhH
Confidence 4677676553 34566666666553 544421 110 1112333567766443322334678
Q ss_pred HHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEE
Q 030298 123 CKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlv 167 (179)
.+..++.++|+||-...+... .-.|-..++.+-... +|++-
T Consensus 60 ~~~i~~~~id~vIn~~~~~~~---~~~~~~iRR~Av~~~-ipl~T 100 (110)
T cd01424 60 VDLIKNGEIQLVINTPSGKRA---IRDGFSIRRAALEYK-VPYFT 100 (110)
T ss_pred HHHHHcCCeEEEEECCCCCcc---CccHHHHHHHHHHhC-CCEEe
Confidence 899999999999987553321 111334455555566 77763
No 357
>PLN02590 probable tyrosine decarboxylase
Probab=25.48 E-value=3.6e+02 Score=23.42 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-----C--ChHHHHH
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-----G--DAAKVIC 123 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----g--~~~~~I~ 123 (179)
|..++..++.|++++.-....+..+-+..........+..++.++ +........+-+.-.. | |+.++|.
T Consensus 235 S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~----~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia 310 (539)
T PLN02590 235 SDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAIS----HDLAKGFIPFFICATVGTTSSAAVDPLVPLG 310 (539)
T ss_pred cCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHH----HHHhcCCCcEEEEEEeCCCCCcccCCHHHHH
Confidence 445566788888887765456666654322222233333333333 2222222232222221 4 7899999
Q ss_pred HHHHHcCCcEEEEeeCCC
Q 030298 124 KEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~ 141 (179)
+.|+++++=+-|=|+.+.
T Consensus 311 ~i~~~~g~WlHVDaA~GG 328 (539)
T PLN02590 311 NIAKKYGIWLHVDAAYAG 328 (539)
T ss_pred HHHHHhCCeEEEecchhh
Confidence 999999988877777653
No 358
>PRK15029 arginine decarboxylase; Provisional
Probab=25.43 E-value=5.2e+02 Score=23.57 Aligned_cols=72 Identities=6% Similarity=-0.040 Sum_probs=37.1
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCcccc-ccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSV-LQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~-~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+...++..|.++. ...+..+++..+....++|+||+...-. ...++ ....+.++|-+..+++||+++-....
T Consensus 24 L~~~Le~~G~eV~---~a~s~~dAl~~l~~~~~~DlVLLD~~LP-d~dG~~~~~ell~~IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 24 LADALSQQNVTVI---KSTSFDDGFAILSSNEAIDCLMFSYQME-HPDEHQNVRQLIGKLHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHHHHHHCCCEEE---EECCHHHHHHHHHhcCCCcEEEEECCCC-CCccchhHHHHHHHHHhhCCCCCEEEEEcCCc
Confidence 3444555666644 2334444444433335899999996532 22211 00124444544332399999966543
No 359
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=25.38 E-value=5.1e+02 Score=23.46 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=59.2
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCC-----------CEEEEEEEecCCch--hhHH---HHHHHHHHHHHHHHhh
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLA-----------DTIHLVHAVSSVQN--QIVY---DMSQGLMEKLAIEAMD 103 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~-----------~~l~~v~v~~~~~~--~~~~---~~~~~~l~~~~~~~~~ 103 (179)
.++.|=|+|.+..+-..|+.-|..+..... .++.+.|..+.... .+.+ .+-....+... ..++
T Consensus 576 ~~~~v~vavEGNSsQdsaVaIa~~i~~~~~~~~~~~~~~~~~~~~F~H~~~~~~~v~~P~yll~~~K~~Afe~Fi-~~fN 654 (738)
T PHA03368 576 RFRSVRVAVEGNSSQDSAVAIATRIARELASLRASGVAPMPPSLLFYHCRPPGSAVAYPFFLLQKQKTPAFDHFI-KRFN 654 (738)
T ss_pred cccEEEEEEecCccHHHHHHHHHHHHHHHhhhhhcccCCCCceeEEEeeCCCCCceeCcchhhccchhHHHHHHH-HHhc
Confidence 568899999998888888887777765542 26788888765421 1111 11122233322 2233
Q ss_pred hcCcee-----EEEE-ecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 104 VAMVRT-----KARI-VEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 104 ~~~~~~-----~~~~-~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+.+.. ...+ +.-||.+.+++..+. +.-++.|..
T Consensus 655 sg~i~aSQ~lvS~Ti~l~~DPv~YL~~Qi~n--i~~~~~~~~ 694 (738)
T PHA03368 655 SGRVMASQELVSNTVRLQTDPVEYLTKQLKN--LTEVVTGGS 694 (738)
T ss_pred CCceEeeeeeeeeeeeeccChHHHHHHHHhh--cEEEecCCC
Confidence 333322 2222 335999999999988 888998653
No 360
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=25.24 E-value=2.5e+02 Score=23.12 Aligned_cols=79 Identities=9% Similarity=0.042 Sum_probs=41.5
Q ss_pred CcchHHHHHHHHHHhccCCC-EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHc
Q 030298 51 GPNSKHAFDWALIHLCRLAD-TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~-~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~ 129 (179)
...+++.+++|.++|+..+. +++++|=..... .......+..++..+ +.++++++..+ .....-.++. +-.
T Consensus 183 r~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk--~tdglf~e~~~eva~---eyPdI~~~~~~-VDa~a~~Lv~--~P~ 254 (372)
T PLN00118 183 RQASLRVAEYAFHYAKTHGRKRVSAIHKANIMK--KTDGLFLKCCREVAE---KYPEIVYEEVI-IDNCCMMLVK--NPA 254 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEECCccch--hhhHHHHHHHHHHHh---hCCCceEEeee-HHHHHHHhcc--Ccc
Confidence 36678899999999988864 588887543321 112223333333221 23446555433 2223333333 234
Q ss_pred CCcEEEEe
Q 030298 130 KPAAVVIG 137 (179)
Q Consensus 130 ~~dliV~G 137 (179)
++|.||..
T Consensus 255 ~fDViVt~ 262 (372)
T PLN00118 255 LFDVLVMP 262 (372)
T ss_pred cCcEEEEc
Confidence 57866655
No 361
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional
Probab=25.01 E-value=3.1e+02 Score=22.27 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=34.3
Q ss_pred EEEecCC--cchHHHHHHHHHHhccCCCEEEEEEEecCCchh
Q 030298 45 LIAVDHG--PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ 84 (179)
Q Consensus 45 lv~vd~s--~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~ 84 (179)
|+-+|++ +..-..++.++.|+.-.+..+++-++......+
T Consensus 2 mi~idGs~~eGGgQilR~alaLS~ltgkpv~I~nIR~~r~~P 43 (343)
T PRK04204 2 MIEIDGSYGEGGGQILRTALALSAITGKPFRITNIRANRPNP 43 (343)
T ss_pred eEEEeCCcccccHHHHHHHHHHHHhhCCCEEEEEeccCCCCC
Confidence 4779999 788899999999999999999999998765443
No 362
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=24.94 E-value=2.1e+02 Score=25.15 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcE
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPI 165 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pV 165 (179)
....+.+.+ +.++.||... +.+..+=....+++++..+. +|+
T Consensus 89 a~FA~a~~~--aGlvfIGP~~-~aI~aMGdK~~AK~l~~~Ag-Vp~ 130 (645)
T COG4770 89 ADFAQAVED--AGLVFIGPSA-GAIRAMGDKIAAKKLAAEAG-VPT 130 (645)
T ss_pred HHHHHHHHH--CCcEEECCCH-HHHHHhccHHHHHHHHHHcC-CCc
Confidence 355566666 8899999764 33444333457888888888 775
No 363
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=24.78 E-value=1.7e+02 Score=22.34 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=29.7
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.++.+.+.+.|.|++|.+.. ...--...+...+ ++.+ .|+++.|....
T Consensus 24 ~~~~~~~~gtdai~vGGS~~--vt~~~~~~~v~~i-k~~~-lPvilfp~~~~ 71 (232)
T PRK04169 24 ALEAICESGTDAIIVGGSDG--VTEENVDELVKAI-KEYD-LPVILFPGNIE 71 (232)
T ss_pred HHHHHHhcCCCEEEEcCCCc--cchHHHHHHHHHH-hcCC-CCEEEeCCCcc
Confidence 33667778999999996631 2221122344444 4477 99999887543
No 364
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=24.72 E-value=2.6e+02 Score=21.25 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
...+.+...+.++|.|++....+....+-..-....++.+..+ +||+..-.
T Consensus 157 ~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~-ipvia~GG 207 (254)
T TIGR00735 157 AVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVK-IPVIASGG 207 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCC-CCEEEeCC
Confidence 4566677788899988885543332222222356677888888 99988743
No 365
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.69 E-value=2.9e+02 Score=20.32 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=31.4
Q ss_pred ecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 114 VEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 114 ~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
...+..+++.+..+..+-.-+++++..+......-+... .+.+.... .|+|++=..+
T Consensus 86 ~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~l-r~~l~~~~-~P~LllFGTG 142 (185)
T PF09936_consen 86 VVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAEL-RRMLEEED-RPVLLLFGTG 142 (185)
T ss_dssp EESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHH-HHHHHH---S-EEEEE--T
T ss_pred cHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHH-HHHHhccC-CeEEEEecCC
Confidence 457888888888888999999999887744343333444 44556677 8998875443
No 366
>PRK02628 nadE NAD synthetase; Reviewed
Probab=24.67 E-value=3e+02 Score=24.61 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=29.4
Q ss_pred ccCCCeEEEEecCCcchHHHHHHHHHHhccCC---CEEEEEEE
Q 030298 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRLA---DTIHLVHA 77 (179)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~---~~l~~v~v 77 (179)
....++|+|++.+...|.-++..+.......+ .+++.++.
T Consensus 358 ~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~m 400 (679)
T PRK02628 358 ATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTM 400 (679)
T ss_pred HcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEEC
Confidence 34579999999999888876666666654445 56777777
No 367
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.53 E-value=4.1e+02 Score=21.98 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=56.3
Q ss_pred EEEEecCCcchHHHHHHHHHHhcc---CCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCR---LADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~---~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
++++-.++.....+...|..+... .+.++.++++.... ......+..+ .+..++++.. .. + .+
T Consensus 178 ~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R------~aa~eQL~~~----a~~lgvpv~~--~~-~-~~ 243 (388)
T PRK12723 178 ILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR------IGAKKQIQTY----GDIMGIPVKA--IE-S-FK 243 (388)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc------HHHHHHHHHH----hhcCCcceEe--eC-c-HH
Confidence 344556666677777777666543 35678888774321 1111223332 3333455432 12 1 22
Q ss_pred HHHHH-HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCC-CC-cEEEEcCC
Q 030298 121 VICKE-AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCK-TA-PIIVVPGK 171 (179)
Q Consensus 121 ~I~~~-a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~-~~-pVlvv~~~ 171 (179)
.+... .+..++|+|++.+-+++......+... ..++.... .. .+||+...
T Consensus 244 ~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el-~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 244 DLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEM-KELLNACGRDAEFHLAVSST 296 (388)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHH-HHHHHhcCCCCeEEEEEcCC
Confidence 23221 334679999999998776332222222 33444333 12 34666554
No 368
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.52 E-value=2.1e+02 Score=18.62 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=24.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
+.+++.+..+......++.+ +.++..|+++.++..
T Consensus 54 ~d~vi~is~sg~~~~~~~~~-~~ak~~g~~vi~iT~ 88 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELL-RFAKERGAPVILITS 88 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHH-HHHHHTTSEEEEEES
T ss_pred cceeEeeeccccchhhhhhh-HHHHhcCCeEEEEeC
Confidence 67788888777777766655 477777777755543
No 369
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=24.42 E-value=2.1e+02 Score=21.36 Aligned_cols=9 Identities=22% Similarity=0.339 Sum_probs=4.5
Q ss_pred eEEEEecCC
Q 030298 109 TKARIVEGD 117 (179)
Q Consensus 109 ~~~~~~~g~ 117 (179)
....+..||
T Consensus 33 ~d~vv~~GD 41 (239)
T TIGR03729 33 IDHLHIAGD 41 (239)
T ss_pred CCEEEECCc
Confidence 344455555
No 370
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=24.40 E-value=1.6e+02 Score=21.00 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEE
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVV 168 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv 168 (179)
..+..+-..++||+|+..-++.-.... .....|.. ... +|||+.
T Consensus 84 ~~l~~al~~~~DLlivNkFGk~Ea~G~---Glr~~i~~A~~~g-iPVLt~ 129 (159)
T PF10649_consen 84 AALRRALAEGADLLIVNKFGKQEAEGR---GLRDEIAAALAAG-IPVLTA 129 (159)
T ss_pred HHHHHHHhcCCCEEEEcccHHhhhcCC---CHHHHHHHHHHCC-CCEEEE
Confidence 444556677899999998765433321 22222222 346 899865
No 371
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=24.31 E-value=3.1e+02 Score=21.67 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhcCceeE-EEEecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 93 LMEKLAIEAMDVAMVRTK-ARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.++.+++. -++.++++. +++.+.+-.+.|.++.+++..|.||+.-+.
T Consensus 117 YL~~Cl~~-Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 117 YLNKCLKV-YKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHHHHHHH-HHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 44444333 344567655 344456788999999999999999998653
No 372
>PRK14561 hypothetical protein; Provisional
Probab=24.30 E-value=2.9e+02 Score=20.15 Aligned_cols=84 Identities=15% Similarity=0.015 Sum_probs=44.4
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC------
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG------ 116 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g------ 116 (179)
+|+|++.+...|..++..+.++ .++.++++..... . .. ...+..++..|++........
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g~~-----~----e~-~~a~~~a~~lGi~~~~v~~~~~~~~~~ 66 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFGVL-----D----SW-KHAREAAKALGFPHRVLELDREILEKA 66 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecCch-----h----HH-HHHHHHHHHhCCCEEEEECCHHHHHHH
Confidence 5888888888777766655332 3455666543321 0 01 123333444455544332211
Q ss_pred ---------------ChHHHHHHHHHHcCCcEEEEeeCCCC
Q 030298 117 ---------------DAAKVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 117 ---------------~~~~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
.....++..+. .+++.|+.|.+.-.
T Consensus 67 ~~~~~~~~~P~~~~~~l~~~~l~~~a-~g~~~Ia~G~n~DD 106 (194)
T PRK14561 67 VDMIIEDGYPNNAIQYVHEHALEALA-EEYDVIADGTRRDD 106 (194)
T ss_pred HHHHHHcCCCCchhHHHHHHHHHHHH-cCCCEEEEEecCCC
Confidence 11123343344 88999999988654
No 373
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=24.20 E-value=1.8e+02 Score=22.64 Aligned_cols=77 Identities=16% Similarity=0.057 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhcCceeEEEEecC-ChH-HHHHHHHHHcCCcEEEEeeCCCCCccc--------ccc--CchhHHHHhcCC
Q 030298 94 MEKLAIEAMDVAMVRTKARIVEG-DAA-KVICKEAERLKPAAVVIGSRGRGLIQS--------VLQ--GSVGEYCLHHCK 161 (179)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~g-~~~-~~I~~~a~~~~~dliV~G~~~~~~~~~--------~~~--gs~~~~ll~~~~ 161 (179)
++...+.+.+..| +.+..+++| +.. -..+++|.+...+.+|+=+.=.+...- +.+ -+..++| ...+
T Consensus 115 i~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~rv~~~~~~~~~~~d~f~~i~kI-~~i~ 192 (258)
T KOG1552|consen 115 IKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMRVAFPDTKTTYCFDAFPNIEKI-SKIT 192 (258)
T ss_pred HHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccchhhhhhhccCcceEEeeccccccCcc-eecc
Confidence 3344555555555 566667776 332 224677766667888876542211110 111 1122333 5678
Q ss_pred CCcEEEEcCCCC
Q 030298 162 TAPIIVVPGKEA 173 (179)
Q Consensus 162 ~~pVlvv~~~~~ 173 (179)
||||++...+.
T Consensus 193 -~PVLiiHgtdD 203 (258)
T KOG1552|consen 193 -CPVLIIHGTDD 203 (258)
T ss_pred -CCEEEEecccC
Confidence 99999987543
No 374
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=24.13 E-value=2.9e+02 Score=20.15 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=54.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhc-cCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCcee-EEEEec---
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLC-RLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRT-KARIVE--- 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~-~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~--- 115 (179)
....+++.+...-....+......+ ..+ .+++++.+.+..-.....+.....+++ ..+...+++- .++...
T Consensus 21 ~~~~i~LsgGstp~~~y~~L~~~~~~~i~w~~v~~~~~DEr~v~~~~~~Sn~~~~~~---~l~~~~~i~~~~i~~~~~~~ 97 (199)
T PF01182_consen 21 GRAVIALSGGSTPKPLYQELAKLHKERIDWSRVHFFNVDERVVPPDDPDSNYRMLRE---HLLDPLPIPPENIHPIDGEA 97 (199)
T ss_dssp SSEEEEE--SCTHHHHHHHHHHHHHTCSCGGGEEEEESEEESSTTTSTTSHHHHHHH---HTGGGSGGGGGGEETSSTTT
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhccccCChhHeEEEeCcccccCCCCCccHHHHHHH---HhhccCCCCcceEEeCCCCC
Confidence 5678888877777777776666552 122 468888876643111111222222222 2233222221 122223
Q ss_pred CChHHHHHHHHHHc----------CCcEEEEeeCCCCCccccccCchh
Q 030298 116 GDAAKVICKEAERL----------KPAAVVIGSRGRGLIQSVLQGSVG 153 (179)
Q Consensus 116 g~~~~~I~~~a~~~----------~~dliV~G~~~~~~~~~~~~gs~~ 153 (179)
.++.++...|.+.. .+|++++|-..-+-....+-|+..
T Consensus 98 ~~~~~~~~~y~~~l~~~~~~~~~p~~Dl~lLG~G~DGH~aslfPg~~~ 145 (199)
T PF01182_consen 98 DDPEEAAERYEQELASLGGEAGFPGFDLVLLGMGEDGHTASLFPGSPA 145 (199)
T ss_dssp SSHHHHHHHHHHHHHHHSSSEECESBSEEEEE--TTS-BTTB-TTCHT
T ss_pred CCHHHHHHHHHHHHHHhccccCCCceeEEEeccccCCCeeccCCCCcc
Confidence 35666666665433 399999998866666666656544
No 375
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=24.04 E-value=2.1e+02 Score=18.51 Aligned_cols=38 Identities=8% Similarity=-0.057 Sum_probs=21.1
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+...|.++... -...+.+.+++.+.+.++|+|.++...
T Consensus 23 l~~~G~~v~~l-~~~~~~~~~~~~i~~~~pdiV~iS~~~ 60 (125)
T cd02065 23 LRDNGFEVIDL-GVDVPPEEIVEAAKEEDADVVGLSALS 60 (125)
T ss_pred HHHCCCEEEEc-CCCCCHHHHHHHHHHcCCCEEEEecch
Confidence 44445554322 123455666666666777777776553
No 376
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.98 E-value=4.3e+02 Score=22.09 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=44.5
Q ss_pred CeEEEEe--cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH
Q 030298 42 RDILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (179)
Q Consensus 42 ~~Ilv~v--d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (179)
.+|++-+ .++..+..+...|..+.. .+.++.++.+.... . ...+.+. ...+..++.+.......+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR---~---gAveQLk----~yae~lgvpv~~~~dp~dL~ 274 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFR---S---GAVEQFQ----GYADKLDVELIVATSPAELE 274 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccC---c---cHHHHHH----HHhhcCCCCEEecCCHHHHH
Confidence 3444444 345555666666655543 35566665543211 1 1111222 22333345443210001223
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCcccc
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSV 147 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~ 147 (179)
++|..+....++|+|++.+-|++....-
T Consensus 275 ~al~~l~~~~~~D~VLIDTAGr~~~d~~ 302 (407)
T PRK12726 275 EAVQYMTYVNCVDHILIDTVGRNYLAEE 302 (407)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCccCHH
Confidence 3333333335699999999988764443
No 377
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=23.65 E-value=4e+02 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHhccCCC-EEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLAD-TIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~-~l~~v~v~~ 79 (179)
..+++.+++|.++|+..+. +++++|=..
T Consensus 147 ~~~eRi~r~Af~~A~~r~~~~Vt~v~KaN 175 (334)
T PRK08997 147 KGAERIVRFAYELARKEGRKKVTAVHKAN 175 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 6678899999999988764 688887543
No 378
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.64 E-value=1.6e+02 Score=24.43 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
|+-.+.+++.+++.++.++.+.+.+..
T Consensus 102 GdDi~~v~~~~~~~~~~vi~v~t~gf~ 128 (427)
T cd01971 102 GDDVGAVVSEFQEGGAPIVYLETGGFK 128 (427)
T ss_pred hcCHHHHHHHhhhcCCCEEEEECCCcC
Confidence 655666666666777888888776543
No 379
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.55 E-value=2.6e+02 Score=20.29 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=25.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
.+=|||+|....+..+.+|...+... |.+++++.
T Consensus 36 DNTLv~wd~~~~tpe~~~W~~e~k~~-gi~v~vvS 69 (175)
T COG2179 36 DNTLVPWDNPDATPELRAWLAELKEA-GIKVVVVS 69 (175)
T ss_pred cCceecccCCCCCHHHHHHHHHHHhc-CCEEEEEe
Confidence 56678888889999999998776654 66666653
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=23.45 E-value=3.9e+02 Score=21.33 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=49.7
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH-
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI- 122 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I- 122 (179)
.+++..++-.+..+...|..+.. .+.++.++...... . ...+.+..+ ....++.+.......++...+
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r---~---~a~eql~~~----a~~~~i~~~~~~~~~dpa~~v~ 186 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFR---A---AAIEQLQVW----GERVGVPVIAQKEGADPASVAF 186 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccc---h---hhHHHHHHH----HHHcCceEEEeCCCCCHHHHHH
Confidence 34555666667777777766654 46677766542211 0 111122221 222344443222223554332
Q ss_pred --HHHHHHcCCcEEEEeeCCCCCccccc
Q 030298 123 --CKEAERLKPAAVVIGSRGRGLIQSVL 148 (179)
Q Consensus 123 --~~~a~~~~~dliV~G~~~~~~~~~~~ 148 (179)
+..+...++|+|++.+.++......+
T Consensus 187 ~~l~~~~~~~~D~ViIDTaGr~~~~~~l 214 (318)
T PRK10416 187 DAIQAAKARGIDVLIIDTAGRLHNKTNL 214 (318)
T ss_pred HHHHHHHhCCCCEEEEeCCCCCcCCHHH
Confidence 34566788999999999887654433
No 381
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=23.42 E-value=3.1e+02 Score=20.67 Aligned_cols=36 Identities=6% Similarity=0.071 Sum_probs=28.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
.+|+|++.+.+.|..++..+.+. +.++.++++....
T Consensus 41 ~~i~vs~SGGKDS~vlL~L~~~~----~~~i~vvfiDTG~ 76 (241)
T PRK02090 41 GRLALVSSFGAEDAVLLHLVAQV----DPDIPVIFLDTGY 76 (241)
T ss_pred CCEEEEecCCHHHHHHHHHHHhc----CCCCcEEEecCCC
Confidence 45999999999999988877663 4568888886554
No 382
>TIGR00930 2a30 K-Cl cotransporter.
Probab=23.29 E-value=6.3e+02 Score=23.75 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=69.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC-ChHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-DAAK 120 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-~~~~ 120 (179)
-+|||.+........+++++-.+.+ .++-+.+.||.+.+.... .+......++ ....++..+++.-+.+..+ +..+
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~ 652 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPRLEC-VKEAQAAEAK-IQTWLEKNKVKAFYAVVVADDLRE 652 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCchhhh-HHHHHHHHHH-HHHHHHHhCCCeEEEEecCCCHHH
Confidence 5789999877888889999988874 345667778876532221 1212222222 2233444556655555554 6666
Q ss_pred HHHHHHHHc-----CCcEEEEeeCCCCC-----ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 121 VICKEAERL-----KPAAVVIGSRGRGL-----IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~-----~~dliV~G~~~~~~-----~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++....+.. .+..|+||....-. ..+-++ .+.... .... .-|+++|.
T Consensus 653 g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~-~~i~~a-~~~~-~~v~i~r~ 709 (953)
T TIGR00930 653 GVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYI-GIIHDA-FDAH-LAVVVVRN 709 (953)
T ss_pred HHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHH-HHHHHH-HHcC-CcEEEEcc
Confidence 666665543 47889999764200 001111 222333 2456 78888875
No 383
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.29 E-value=1.5e+02 Score=22.86 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+......++++.|++|+.+....... -.-++.++.... +|.+|+..
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PG----P~~ARE~l~~~~-iP~IvI~D 94 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPG----PTKAREMLSAKG-IPCIVISD 94 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHH----HHHHHHHHHHSS-S-EEEEEE
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHHHHhCC-CCEEEEcC
Confidence 34445567899999999876433221 124788888888 99999854
No 384
>PRK07667 uridine kinase; Provisional
Probab=23.24 E-value=2e+02 Score=20.76 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.|++...+++-+-+++|-.|.++..+..+...-.+.+.... +++.++.-
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~-~~~~~i~~ 53 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEG-IPFHIFHI 53 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEEc
Confidence 34444444445545556555544444322222222333344 56555543
No 385
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=23.19 E-value=2.1e+02 Score=19.87 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=23.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
+.+++.+..+..+...++. ++.|+..|.++..+.-
T Consensus 80 ~D~~i~iS~sG~t~~~~~~-~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 80 GDVLLGISTSGNSKNVLKA-IEAAKDKGMKTITLAG 114 (154)
T ss_pred CCEEEEEcCCCCCHHHHHH-HHHHHHCCCEEEEEeC
Confidence 5677777777777666653 4667777777666654
No 386
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.18 E-value=2e+02 Score=21.20 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=30.7
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
.....+++.+..+.++...++ +++.|+..|.++..+.-.+
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~-a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeCCC
Confidence 344789999999888887555 6689998899888776543
No 387
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=23.14 E-value=3.8e+02 Score=21.16 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcCceeEEEEecC-----ChHHHHHHHHHHcCCcEEEEeeCCC-CCccccccCchhHHHHhcCCCCcEEE
Q 030298 94 MEKLAIEAMDVAMVRTKARIVEG-----DAAKVICKEAERLKPAAVVIGSRGR-GLIQSVLQGSVGEYCLHHCKTAPIIV 167 (179)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~~g-----~~~~~I~~~a~~~~~dliV~G~~~~-~~~~~~~~gs~~~~ll~~~~~~pVlv 167 (179)
+.+..+...+..++.+.+.+..| .....+++.+.+.++|.|.+..+.. ........-.....+.+..+ +||+.
T Consensus 119 ~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-ipvi~ 197 (319)
T TIGR00737 119 IGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR-IPVIG 197 (319)
T ss_pred HHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC-CcEEE
Confidence 33334443333345565555433 1245677777888999998864322 11111111234556667778 99887
Q ss_pred EcC
Q 030298 168 VPG 170 (179)
Q Consensus 168 v~~ 170 (179)
.-.
T Consensus 198 nGg 200 (319)
T TIGR00737 198 NGD 200 (319)
T ss_pred eCC
Confidence 643
No 388
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=23.12 E-value=1.7e+02 Score=21.28 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=13.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTI 72 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l 72 (179)
..||+++..+.++...++ |+..|+..+-.+
T Consensus 110 GDvLigISTSGNS~nVl~-Ai~~Ak~~gm~v 139 (176)
T COG0279 110 GDVLIGISTSGNSKNVLK-AIEAAKEKGMTV 139 (176)
T ss_pred CCEEEEEeCCCCCHHHHH-HHHHHHHcCCEE
Confidence 445555554444444333 334444443333
No 389
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=23.09 E-value=3.4e+02 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHhccC----C-CEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRL----A-DTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~----~-~~l~~v~v~~ 79 (179)
..+++.+++|.++|++. + .+++++|=..
T Consensus 140 ~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaN 172 (330)
T PRK14025 140 KASERIFRFAFEMAKRRKKMGKEGKVTCAHKAN 172 (330)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCeEEEEECCC
Confidence 56788999999999877 3 3688887543
No 390
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=23.04 E-value=3.5e+02 Score=20.70 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=21.7
Q ss_pred HHHHHHcCCcEEEEeeCCCCCcc---ccccCchhHHHHhcCCCCcEEEE
Q 030298 123 CKEAERLKPAAVVIGSRGRGLIQ---SVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~~~~~~---~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
++..++.++|+||+=++...... .......+.++++..+++++++-
T Consensus 176 v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~Ilg 224 (277)
T cd07410 176 VPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILT 224 (277)
T ss_pred HHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEe
Confidence 33344456777776665422111 01122334566666444666554
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.98 E-value=4.3e+02 Score=21.74 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=49.2
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
++++-.+.-.+..+...|..+....| .++.++...... . ...+.+..+ .+..++.+...-..++....+
T Consensus 141 ~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R-~-----ga~EqL~~~----a~~~gv~~~~~~~~~~l~~~l 210 (374)
T PRK14722 141 ALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR-I-----GGHEQLRIF----GKILGVPVHAVKDGGDLQLAL 210 (374)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc-c-----cHHHHHHHH----HHHcCCceEecCCcccHHHHH
Confidence 34444556666777777766665555 466555432211 1 112233332 233356554332334555444
Q ss_pred HHHHHHcCCcEEEEeeCCCCCccccc
Q 030298 123 CKEAERLKPAAVVIGSRGRGLIQSVL 148 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~~~~~~~~~ 148 (179)
. +..+.|+|+|.+-+++.....+
T Consensus 211 ~---~l~~~DlVLIDTaG~~~~d~~l 233 (374)
T PRK14722 211 A---ELRNKHMVLIDTIGMSQRDRTV 233 (374)
T ss_pred H---HhcCCCEEEEcCCCCCcccHHH
Confidence 3 3345899999999887765543
No 392
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=22.94 E-value=4e+02 Score=21.35 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=56.8
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHH-
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAE- 127 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~- 127 (179)
..+......++.|++..+..|-++++-....... .......++.++++ ..++.+..++.-.-+..|.-...|+.+..
T Consensus 19 Ss~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~-~~~a~s~~~R~~dL-~~af~d~~vk~Il~~rGGygs~rlLp~ld~ 96 (313)
T COG1619 19 SSGATATDALKRAIQRLENLGFEVVFGEHILRRD-QYFAGSDEERAEDL-MSAFSDPDVKAILCVRGGYGSNRLLPYLDY 96 (313)
T ss_pred CcccchHHHHHHHHHHHHHcCCEEEechhhhhcc-ccccCCHHHHHHHH-HHHhcCCCCeEEEEcccCCChhhhhhhcch
Confidence 3333367889999999998897777765544332 22222334555553 44456677777777777877777776654
Q ss_pred --HcCCcEEEEeeCC
Q 030298 128 --RLKPAAVVIGSRG 140 (179)
Q Consensus 128 --~~~~dliV~G~~~ 140 (179)
..+-.-+++|-+.
T Consensus 97 ~~i~~~pKifiGySD 111 (313)
T COG1619 97 DLIRNHPKIFIGYSD 111 (313)
T ss_pred HHHhcCCceEEEecH
Confidence 2346678888664
No 393
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=22.90 E-value=1e+02 Score=21.30 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+.+.++++++++|.|++.-..... .+ .... -+.+++.+ |+|.++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~-~~--i~~i-i~~~~~~~-v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEE-EQ--IKRI-IEELENHG-VRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-H-HH--HHHH-HHHHHTTT--EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCH-HH--HHHH-HHHHHhCC-CEEEEeC
Confidence 4788999999999999999664321 11 1122 23446677 9988886
No 394
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.86 E-value=2.3e+02 Score=18.62 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=25.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
+.+++++..+..+...++ +++.|+..|+++..+.-.
T Consensus 48 ~dl~I~iS~SG~t~~~~~-~~~~a~~~g~~vi~iT~~ 83 (120)
T cd05710 48 KSVVILASHSGNTKETVA-AAKFAKEKGATVIGLTDD 83 (120)
T ss_pred CcEEEEEeCCCCChHHHH-HHHHHHHcCCeEEEEECC
Confidence 578888888887777666 447777777776666543
No 395
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=22.48 E-value=2e+02 Score=17.75 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCC-C-ccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRG-L-IQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~-~-~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..+.|.+..++.+++.|++|..+.- . ....+.-...+.+-++.+ +||.++....
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~-~pv~~~nDa~ 94 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFN-LPVVLVDERL 94 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhC-CcEEEEeCCc
Confidence 4566666666677888999865531 1 111111234444445667 9999886543
No 396
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.44 E-value=2.7e+02 Score=22.45 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccc----cccCchhHHHHhcC--CCCcEEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQS----VLQGSVGEYCLHHC--KTAPIIV 167 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~----~~~gs~~~~ll~~~--~~~pVlv 167 (179)
-+...++++.|++.+.-+|+..+.+...... ..+......+.+++ . +||.+
T Consensus 34 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~-VPV~l 90 (321)
T PRK07084 34 MEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCP-IPIVL 90 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCC-CcEEE
Confidence 3789999999999999999988765322211 11223334556655 6 78765
No 397
>PRK09875 putative hydrolase; Provisional
Probab=22.21 E-value=3.5e+02 Score=21.33 Aligned_cols=38 Identities=5% Similarity=-0.119 Sum_probs=25.2
Q ss_pred hhcCceeEEEEecCChHHHHHHHHHHcCC--cEEEEeeCC
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEAERLKP--AAVVIGSRG 140 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~--dliV~G~~~ 140 (179)
...|..+.+|...++....+++.+++.++ +-+|||.-.
T Consensus 149 ~~TG~pi~~Ht~~~~~g~e~l~il~e~Gvd~~rvvi~H~d 188 (292)
T PRK09875 149 NQTGRPISTHTSFSTMGLEQLALLQAHGVDLSRVTVGHCD 188 (292)
T ss_pred HHHCCcEEEcCCCccchHHHHHHHHHcCcCcceEEEeCCC
Confidence 34466676665556555566777777777 778888653
No 398
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.14 E-value=3.9e+02 Score=20.88 Aligned_cols=86 Identities=8% Similarity=-0.054 Sum_probs=50.6
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CCh
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GDA 118 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~ 118 (179)
.++|.|-+.++.+...++-.+.+-. ..++++.++-......... . .....+..|+++.+.-.. ...
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~~~g-~l~~eI~~ViSn~~~~~~a-------~----~~~~A~~~gIP~~~~~~~~~~~~ 137 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRWQDG-RLPVDITCVISNHERGPNT-------H----VMRFLERHGIPYHYLPTTKENKR 137 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhhhcC-CCCceEEEEEeCCCCCCCc-------h----HHHHHHHcCCCEEEeCCCCCCCH
Confidence 4789999999988888887774443 3466666655433221110 1 122234456776533222 223
Q ss_pred HHHHHHHHHHcCCcEEEEeeCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.+.+++..+ ++|++|+....
T Consensus 138 e~~~~~~l~--~~DliVLAgym 157 (268)
T PLN02828 138 EDEILELVK--GTDFLVLARYM 157 (268)
T ss_pred HHHHHHHHh--cCCEEEEeeeh
Confidence 456677666 59999999754
No 399
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=22.12 E-value=1.4e+02 Score=22.77 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=11.9
Q ss_pred cCCCeEEEEecCCcc
Q 030298 39 RRGRDILIAVDHGPN 53 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~ 53 (179)
...++|++++|.+..
T Consensus 34 ~~v~~I~~alD~t~~ 48 (249)
T TIGR00486 34 EEVKKVVVAVDASES 48 (249)
T ss_pred cccCEEEEEecCCHH
Confidence 356899999999863
No 400
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=22.08 E-value=3.1e+02 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=22.3
Q ss_pred HHHHHHHcCCcEEEEeeCCCCC--ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGL--IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~--~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
..+.+....+|++++...-.+. ... -.....+....+.+|++++-.
T Consensus 41 ~~~~~~~~~~DlvllD~~l~~~~~~~g---~~~~~~l~~~~~~~~iIvls~ 88 (216)
T PRK10840 41 LINNLPKLDAHVLITDLSMPGDKYGDG---ITLIKYIKRHFPSLSIIVLTM 88 (216)
T ss_pred HHHHHHhCCCCEEEEeCcCCCCCCCCH---HHHHHHHHHHCCCCcEEEEEe
Confidence 3344555667777776543221 011 123444444333377777644
No 401
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=22.05 E-value=2.3e+02 Score=19.58 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
|...+...+....+ +|+||+=... -...+.+..++. +||+
T Consensus 81 ~Esl~Dtar~ls~~-~D~iv~R~~~---------~~~~~~~a~~~~-vPVI 120 (142)
T PF02729_consen 81 GESLEDTARVLSRY-VDAIVIRHPS---------HGALEELAEHSS-VPVI 120 (142)
T ss_dssp SSEHHHHHHHHHHH-CSEEEEEESS---------HHHHHHHHHHCS-SEEE
T ss_pred CCCHHHHHHHHHHh-hheEEEEecc---------chHHHHHHHhcc-CCeE
Confidence 44444444454455 9999887443 234677888889 9986
No 402
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=21.87 E-value=3.2e+02 Score=19.79 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
..+..+|++.+++-|++|.+...
T Consensus 101 ~~a~~~A~~~g~~~v~~G~~~~d 123 (201)
T TIGR00364 101 SIAASYAEALGAEAVITGVCETD 123 (201)
T ss_pred HHHHHHHHHCCCCEEEEEeccCc
Confidence 44568899999999999987543
No 403
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.79 E-value=2.2e+02 Score=20.82 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=24.8
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
.+.+++.+..+..+...++ ++..|+..|.++..+.-
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~-~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQ-AIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCCCeEEEEEC
Confidence 4678888887777777665 44777777777666654
No 404
>PRK13054 lipid kinase; Reviewed
Probab=21.75 E-value=3.9e+02 Score=20.79 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=21.4
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHL 74 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~ 74 (179)
+++++++-+++.....+.+..........+.++.+
T Consensus 2 ~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v 36 (300)
T PRK13054 2 TFPKSLLILNGKSAGNEELREAVGLLREEGHTLHV 36 (300)
T ss_pred CCceEEEEECCCccchHHHHHHHHHHHHcCCEEEE
Confidence 45778888887654445555555555555556555
No 405
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=21.69 E-value=4.1e+02 Score=20.99 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhcCceeEEEEecCC---h--HHHHHHHHHHcCCcEEEEeeCCCC-CccccccCchhHHHHhcCCCCcEE
Q 030298 93 LMEKLAIEAMDVAMVRTKARIVEGD---A--AKVICKEAERLKPAAVVIGSRGRG-LIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~g~---~--~~~I~~~a~~~~~dliV~G~~~~~-~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+.++.+...+..++++.+.+..|. . ...+++...+.+++.|.+=.+.+. .......-....++....+ +||+
T Consensus 109 ~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi 187 (309)
T PF01207_consen 109 LLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP-IPVI 187 (309)
T ss_dssp HHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T-SEEE
T ss_pred HhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc-ceeE
Confidence 3444444444444566666665542 2 466777788999999988765322 2222222234455667777 8877
Q ss_pred E
Q 030298 167 V 167 (179)
Q Consensus 167 v 167 (179)
.
T Consensus 188 ~ 188 (309)
T PF01207_consen 188 A 188 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 406
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=21.67 E-value=2.8e+02 Score=19.36 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=35.6
Q ss_pred HHhhhcCceeEEEEec--CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 100 EAMDVAMVRTKARIVE--GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+.....|+++++.... |...+.|.+... ++|-||+-..+.+-.+ -...+.+.... +|++=|+
T Consensus 35 ~~a~~~g~~v~~~QSN~Egelid~I~~a~~--~~dgiIINpga~THtS-----vAi~DAl~~~~-~P~VEVH 98 (140)
T cd00466 35 ELAAELGVEVEFFQSNHEGELIDWIHEARD--GADGIIINPGAYTHTS-----IALRDALAAVS-IPVIEVH 98 (140)
T ss_pred HHHHHcCCEEEEEeeCcHHHHHHHHHHhhc--cCcEEEEcchHHHHHH-----HHHHHHHHcCC-CCEEEEe
Confidence 3344457777766543 455555555433 5899999765432211 12244556677 8988664
No 407
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=21.67 E-value=3.6e+02 Score=26.15 Aligned_cols=69 Identities=9% Similarity=-0.017 Sum_probs=43.6
Q ss_pred HHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 97 LAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+..-.+...|.++. -+. .-+.+.|++.++++++|+|.|+.--......+ ..+.+.+-+...++||++--
T Consensus 770 iV~~~L~~~GfeVI--dLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m--~~~i~~L~~~g~~v~v~vGG 839 (1229)
T PRK09490 770 IVGVVLQCNNYEVI--DLGVMVPAEKILETAKEENADIIGLSGLITPSLDEM--VHVAKEMERQGFTIPLLIGG 839 (1229)
T ss_pred HHHHHHHhCCCEEE--ECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHH--HHHHHHHHhcCCCCeEEEEe
Confidence 34444555565542 222 35799999999999999999986543333332 45566665554337877653
No 408
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=21.66 E-value=1.5e+02 Score=19.30 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=9.0
Q ss_pred HHHHhccCCCEEEEEE
Q 030298 61 ALIHLCRLADTIHLVH 76 (179)
Q Consensus 61 a~~la~~~~~~l~~v~ 76 (179)
++.+|+..|+++.++.
T Consensus 6 a~q~ak~~G~~vi~~~ 21 (130)
T PF00107_consen 6 AIQLAKAMGAKVIATD 21 (130)
T ss_dssp HHHHHHHTTSEEEEEE
T ss_pred HHHHHHHcCCEEEEEE
Confidence 5566666665554443
No 409
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.62 E-value=1.9e+02 Score=17.17 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=24.2
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
-+.+++.++.+..+...++ +++.++..|+++..+.
T Consensus 47 ~~d~~i~iS~sg~t~~~~~-~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYSGRTEELLA-ALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHcCCeEEEEe
Confidence 3678888888877777555 4466777777765554
No 410
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=21.55 E-value=2.3e+02 Score=18.48 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
+.-++..+..++-+||+.++-+....+ ..++=..-+. +||+..+...
T Consensus 25 k~tiK~lk~gkaKliiiAsN~P~~~k~-----~ieyYAkLs~-ipV~~y~Gt~ 71 (100)
T COG1911 25 KRTIKSLKLGKAKLIIIASNCPKELKE-----DIEYYAKLSD-IPVYVYEGTS 71 (100)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHH-----HHHHHHHHcC-CcEEEecCCc
Confidence 455677788889999999875443332 2344445567 9999887643
No 411
>PRK05667 dnaG DNA primase; Validated
Probab=21.49 E-value=3.6e+02 Score=23.67 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=27.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHH---hccCCCEEEEEEEe
Q 030298 42 RDILIAVDHGPNSKHAFDWALIH---LCRLADTIHLVHAV 78 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~l---a~~~~~~l~~v~v~ 78 (179)
.+|+++.|++.....|...++.+ ....|..+.++...
T Consensus 297 ~~vil~~D~D~AG~~aa~r~~~~~~~l~~~g~~v~vv~lp 336 (580)
T PRK05667 297 DEVILCFDGDKAGRKAALRALELALPLLKDGRQVRVAFLP 336 (580)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCceEEEEECC
Confidence 58999999999888888777777 44446666666543
No 412
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=21.46 E-value=1.4e+02 Score=22.61 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
..+.+..++.++|.|++|--+. ++.+++|-.... +||+
T Consensus 164 ~~~~~a~~edgAeaIiLGCAGm--------s~la~~Lq~~~g-vPVI 201 (230)
T COG4126 164 IEAAEALKEDGAEAIILGCAGM--------SDLADQLQKAFG-VPVI 201 (230)
T ss_pred HHHHHHhhhcCCCEEEEcCccH--------HHHHHHHHHHhC-CCcc
Confidence 3455667899999999996653 344666666666 7764
No 413
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=21.10 E-value=2.2e+02 Score=17.75 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=21.8
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+++..+..|+++.+........+.-+..-.-..+|++|+....
T Consensus 20 L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 20 LEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred HHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccC
Confidence 3444555666666544332322222322222339999998764
No 414
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=21.05 E-value=3e+02 Score=19.13 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=30.4
Q ss_pred cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+...++|.++|.+++ -.++.++. ....+++... + +||+.++..
T Consensus 83 ~~~aDe~i~~~a~~~~--~~iVaTnD---------~eLk~rlr~~-G-IPvi~lr~r 126 (136)
T COG1412 83 GRYADECLLEAALKHG--RYIVATND---------KELKRRLREN-G-IPVITLRQR 126 (136)
T ss_pred CCChHHHHHHHHHHcC--CEEEEeCC---------HHHHHHHHHc-C-CCEEEEeCC
Confidence 5578999999999966 44444443 2345556554 8 999999854
No 415
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=21.00 E-value=2.4e+02 Score=21.73 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=36.2
Q ss_pred ChHHHHHHHH-HHcCCcEEEEeeCCCCCccccccCchhHHHHhcC-CCCcEEEEcCCCCCCC
Q 030298 117 DAAKVICKEA-ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC-KTAPIIVVPGKEAGDA 176 (179)
Q Consensus 117 ~~~~~I~~~a-~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~-~~~pVlvv~~~~~~~~ 176 (179)
.|.+.|.+-. ....+|+++.=.+..+.-....++-.-+-++++- ++.||-+|++-.-+++
T Consensus 140 tPwe~IekRl~aAA~adfVi~~YNP~s~~R~~~~~~a~eil~~~r~~~tpVgivrnagR~~e 201 (249)
T COG1010 140 TPWEVIEKRLRAAAEADFVIALYNPISKRRPEQLGRAFEILREHRSPDTPVGIVRNAGREGE 201 (249)
T ss_pred CcHHHHHHHHHHHhhCCEEEEEECCccccchHHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence 3555555332 2333999998877766655555555545444433 3499999987664443
No 416
>PRK13057 putative lipid kinase; Reviewed
Probab=20.89 E-value=4e+02 Score=20.56 Aligned_cols=7 Identities=29% Similarity=0.819 Sum_probs=3.2
Q ss_pred CcEEEEc
Q 030298 163 APIIVVP 169 (179)
Q Consensus 163 ~pVlvv~ 169 (179)
.|+-++|
T Consensus 75 ~~lgiiP 81 (287)
T PRK13057 75 LPLGILP 81 (287)
T ss_pred CcEEEEC
Confidence 4444444
No 417
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.87 E-value=3.5e+02 Score=19.86 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCC-ccccccCchhHHHHhcCCCCcEEEEc
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~-~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
....+++...+.++|.|.+..+.... ......-....++.+..+ +||+..-
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~-ipvi~~G 190 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS-IPVIANG 190 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC-CeEEEeC
Confidence 45566777778899999886542211 111001122345666667 9988754
No 418
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.84 E-value=2.6e+02 Score=21.55 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=25.9
Q ss_pred HHHHHcCCcEEEEeeCCCC-CccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 124 KEAERLKPAAVVIGSRGRG-LIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~-~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+++++|.||.=-+|.. ++...+ +..+... +||++|.++.
T Consensus 191 al~~~~~i~~lVtK~SG~~Gg~~eKi------~AA~~lg-i~vivI~RP~ 233 (256)
T TIGR00715 191 ALLREYRIDAVVTKASGEQGGELEKV------KAAEALG-INVIRIARPQ 233 (256)
T ss_pred HHHHHcCCCEEEEcCCCCccchHHHH------HHHHHcC-CcEEEEeCCC
Confidence 4567788888887665543 222221 3456677 8888886554
No 419
>PRK07627 dihydroorotase; Provisional
Probab=20.83 E-value=82 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
....++..++.+|+..+++++++|+...
T Consensus 210 aE~~av~r~~~la~~~~~~~hi~HvSs~ 237 (425)
T PRK07627 210 AETIALHTIFELMRVTGARVHLARLSSA 237 (425)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEEeCCCH
Confidence 3455899999999999999999999763
No 420
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.82 E-value=2.5e+02 Score=19.81 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHhhhcCceeEEEEec--CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 100 EAMDVAMVRTKARIVE--GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+.....|+++++.... |...+.|.+..+ ++|-||+-..+.+..+ -...+.+...+ +|++=|+
T Consensus 37 ~~a~~~g~~v~~~QSN~EGelId~I~~a~~--~~dgiiINpga~THtS-----iAl~DAl~~~~-~P~VEVH 100 (146)
T PRK05395 37 EEAAELGVELEFFQSNHEGELIDRIHEARD--GADGIIINPGAYTHTS-----VALRDALAAVS-IPVIEVH 100 (146)
T ss_pred HHHHHcCCEEEEEeeCcHHHHHHHHHhccc--CCcEEEECchHHHHHH-----HHHHHHHHcCC-CCEEEEe
Confidence 3345556777665543 445555555433 5899999765432211 12244556678 9988664
No 421
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=20.80 E-value=1.9e+02 Score=24.80 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
..+.|.+..+.++.++|++.+.--+.+-+-=+++++..+-.... +||+.+.-
T Consensus 73 L~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~-~pVi~v~t 124 (513)
T CHL00076 73 VVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIESD-SDVILADV 124 (513)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcccC-CCEEEeCC
Confidence 34455555555566666666554333222222233332222334 56665543
No 422
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=20.75 E-value=1.5e+02 Score=21.29 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=18.0
Q ss_pred CCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 130 ~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+.|++++-.-+... .....+.+--++++... +||++|-
T Consensus 99 ~~D~vlVEGag~~~-~~~~~~~~n~dia~~L~-a~vIlV~ 136 (199)
T PF13500_consen 99 EYDVVLVEGAGGLM-VPIFSGDLNADIAKALG-APVILVA 136 (199)
T ss_dssp TTCEEEEEESSSTT-SECCTTEEHHHHHHHHT--EEEEEE
T ss_pred cCCEEEEeCCcccC-cccccChHHHHHHHHcC-CCEEEEe
Confidence 45666555443222 22333344445666666 6666553
No 423
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=20.68 E-value=2.7e+02 Score=21.58 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=9.5
Q ss_pred ChHHHHHHHHHHcCCcEEEEee
Q 030298 117 DAAKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~ 138 (179)
+|...+..||++ ..||+-.+
T Consensus 92 ~PSsrL~~FaKe--lkLvfPNa 111 (290)
T KOG2781|consen 92 DPSSRLKMFAKE--LKLVFPNA 111 (290)
T ss_pred CchHHHHHHHHh--heEeccCh
Confidence 455555555555 44444333
No 424
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=20.65 E-value=1.3e+02 Score=25.47 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
-...|+..|+.+|.+.+++++++||....
T Consensus 230 ~EaEA~~rai~ia~~~ncPlyvvhVmsks 258 (522)
T KOG2584|consen 230 LEAEATNRAITIARQANCPLYVVHVMSKS 258 (522)
T ss_pred hhHHHHHHHHHHHHhcCCCcceEEEeehh
Confidence 34568999999999999999999998764
No 425
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=20.62 E-value=2.1e+02 Score=22.39 Aligned_cols=38 Identities=8% Similarity=-0.080 Sum_probs=31.6
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
+...|+..++........+.+.++|++.++.-||+=..
T Consensus 29 LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq 66 (273)
T PF12745_consen 29 LWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQ 66 (273)
T ss_pred HHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEec
Confidence 45678998876666667999999999999999999866
No 426
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=20.50 E-value=5.3e+02 Score=21.87 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=30.7
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
|-....++++.+.+...|..++-++.. .|..+..+|+...
T Consensus 173 P~g~~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~~g 212 (482)
T PRK01269 173 PLGTQEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFNLG 212 (482)
T ss_pred CccccCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEecC
Confidence 556668999999999888886654433 4789999998654
No 427
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=20.47 E-value=2.1e+02 Score=20.81 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
.+|.++-+. +|+||+.--+.=-+...-|.+..+.+++ ++ -|++++
T Consensus 92 ~al~rA~~~--aDvIIIDEIGpMElks~~f~~~ve~vl~-~~-kpliat 136 (179)
T COG1618 92 PALRRALEE--ADVIIIDEIGPMELKSKKFREAVEEVLK-SG-KPLIAT 136 (179)
T ss_pred HHHHHHhhc--CCEEEEecccchhhccHHHHHHHHHHhc-CC-CcEEEE
Confidence 344444444 8999998766544444445677777776 44 466654
No 428
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=20.38 E-value=2.5e+02 Score=21.15 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCC-CcEEEEcCCCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKT-APIIVVPGKEA 173 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~-~pVlvv~~~~~ 173 (179)
...+.+.+.+.+.|.|++|.+..- . .....+.. ++++... .||++.|+...
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v--~-~~~~~~~~-~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGV--S-STLDNVVR-LIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccch--h-hhHHHHHH-HHHHhcCCCCEEEeCCCcc
Confidence 456778888889999999966321 1 11122322 3333332 89999987644
No 429
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.13 E-value=2.7e+02 Score=18.31 Aligned_cols=62 Identities=8% Similarity=0.051 Sum_probs=35.9
Q ss_pred HHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 100 EAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+..+..|.++++.-.. ...+.++.. ++|++.+|..- ++++ ...++++.... +||-+++..+.
T Consensus 23 ~aA~~kg~~~~I~A~s---~~e~~~~~~--~~DvvLlGPQv-----~y~~-~~~~~~~~~~g-iPV~vI~~~dY 84 (102)
T COG1440 23 KAAESKGKDVTIEAYS---ETELSEYID--NADVVLLGPQV-----RYML-KQLKEAAEEKG-IPVEVIDMLDY 84 (102)
T ss_pred HHHHhCCCceEEEEec---hhHHHHhhh--cCCEEEEChHH-----HHHH-HHHHHHhcccC-CCeEEeCHHHc
Confidence 3334445665533322 223333333 49999999652 3333 34567888888 99999876444
No 430
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.11 E-value=2e+02 Score=17.86 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=8.2
Q ss_pred HHHHHHHHcCCcEEEEe
Q 030298 121 VICKEAERLKPAAVVIG 137 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G 137 (179)
.|.++|+.+++.++.++
T Consensus 44 ~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 44 KVEALANEKGVPVSKVD 60 (82)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 34444555555554444
No 431
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=3.6e+02 Score=20.98 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHcC-----C-cEEEEeeCCCCCccccccCchhHHHHhcCCCCc--EEEEcCCC
Q 030298 116 GDAAKVICKEAERLK-----P-AAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAP--IIVVPGKE 172 (179)
Q Consensus 116 g~~~~~I~~~a~~~~-----~-dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~p--Vlvv~~~~ 172 (179)
++..+.|++.-++.+ . +++|+.++ -+...+.+.-+..+.+.+.--+-| ++|||.+-
T Consensus 177 ~ea~~~LLe~e~~~~~~~~~~d~~~vvvaR-~Gs~~~~v~ag~l~~l~~~Dfg~Plh~lvvp~~L 240 (260)
T COG1798 177 NEALELLLEAEERRGRGVLTEDTLAVVVAR-AGSGDEVVRAGTLEELADEDFGEPLHSLVVPGRL 240 (260)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCceEEEEEe-cCCCCceEEechHHHHhhcccCCCceEEEEeccc
Confidence 345667777776643 3 44444444 444444444445566665432255 67888753
No 432
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.10 E-value=3.1e+02 Score=21.62 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCc-----EEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 119 AKVICKEAERLKPA-----AVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 119 ~~~I~~~a~~~~~d-----liV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
..+++++.+.++++ .+|+|++. +.|-....+|.+.. +.|.+++....+
T Consensus 141 p~avi~lL~~~~i~l~Gk~vvVvGrS~-------iVGkPla~lL~~~~-atVtichs~T~~ 193 (284)
T PRK14170 141 PAGIIELIKSTGTQIEGKRAVVIGRSN-------IVGKPVAQLLLNEN-ATVTIAHSRTKD 193 (284)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCC-------cchHHHHHHHHHCC-CEEEEeCCCCCC
Confidence 67788887776554 58888653 33555555666677 899999876543
No 433
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=20.04 E-value=1.9e+02 Score=19.72 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=21.8
Q ss_pred cCceeEEEEecCChHHHHHHHHHHcCCcEEEE
Q 030298 105 AMVRTKARIVEGDAAKVICKEAERLKPAAVVI 136 (179)
Q Consensus 105 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~ 136 (179)
.++.-++.+..|+..+.|..+++-.+++.+.|
T Consensus 110 ~g~~hH~~~~~G~~~~~l~~~~~~lgi~v~~~ 141 (142)
T PF02952_consen 110 NGIAHHVALVYGDYAEELKELAKYLGIEVVEM 141 (142)
T ss_dssp T-SSSEEEEEES--HHHHHHHHHHHT--EE-E
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHcCCEEEEc
Confidence 35666778889999999999999988888765
No 434
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=20.02 E-value=1.2e+02 Score=22.01 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHcCCcEEEEeeCCCCCccccccCchhHHHH-----h--cCCCCcEEEEcCCCCC
Q 030298 125 EAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCL-----H--HCKTAPIIVVPGKEAG 174 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll-----~--~~~~~pVlvv~~~~~~ 174 (179)
-.+...+|++++..-..+...+...| .++.|+ + +.. +||+++|.+-+.
T Consensus 83 rlqlGkYD~llvaPaTsNTvAKIa~G-IADtLVTNAVaqa~Kg~-VPvyivP~D~k~ 137 (187)
T COG1036 83 RLQLGKYDFLLVAPATSNTVAKIAYG-IADTLVTNAVAQAGKGK-VPVYIVPVDYKE 137 (187)
T ss_pred ceecccccEEEEcccccchHHHHHhh-hHHHHHHHHHHHhcCCC-CcEEEecccccC
Confidence 33445699999987655554443322 233332 2 456 999999986544
Done!