Query 030298
Match_columns 179
No_of_seqs 128 out of 1019
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tnj_A Universal stress protei 99.9 1.3E-26 4.6E-31 162.5 14.4 134 37-172 2-149 (150)
2 3s3t_A Nucleotide-binding prot 99.9 8.7E-26 3E-30 157.5 15.4 129 39-169 3-146 (146)
3 2z08_A Universal stress protei 99.9 6.9E-26 2.4E-30 156.7 14.1 129 40-169 1-137 (137)
4 1mjh_A Protein (ATP-binding do 99.9 2.5E-25 8.4E-30 158.0 16.7 131 40-172 4-161 (162)
5 3hgm_A Universal stress protei 99.9 1.1E-25 3.8E-30 157.0 14.4 127 40-168 1-147 (147)
6 2dum_A Hypothetical protein PH 99.9 3E-25 1E-29 158.8 17.0 134 39-174 3-160 (170)
7 1tq8_A Hypothetical protein RV 99.9 3.4E-25 1.2E-29 158.0 13.4 135 36-173 12-161 (163)
8 3dlo_A Universal stress protei 99.9 8E-25 2.7E-29 154.9 14.8 131 37-169 20-155 (155)
9 3fg9_A Protein of universal st 99.9 1.5E-24 5.2E-29 153.1 15.9 130 37-169 11-156 (156)
10 3idf_A USP-like protein; unive 99.9 1.4E-24 4.9E-29 150.0 15.0 124 41-169 1-138 (138)
11 3mt0_A Uncharacterized protein 99.9 2.5E-24 8.6E-29 166.3 16.5 151 11-172 114-278 (290)
12 3fdx_A Putative filament prote 99.9 9E-24 3.1E-28 146.8 14.1 126 42-169 2-143 (143)
13 2gm3_A Unknown protein; AT3G01 99.9 1.9E-23 6.4E-28 150.2 15.8 133 40-174 4-167 (175)
14 1jmv_A USPA, universal stress 99.9 9E-24 3.1E-28 146.5 11.2 129 40-172 1-140 (141)
15 3cis_A Uncharacterized protein 99.9 5.6E-23 1.9E-27 160.1 15.8 152 11-171 147-307 (309)
16 3loq_A Universal stress protei 99.9 5.8E-23 2E-27 158.9 14.7 145 12-173 149-293 (294)
17 3olq_A Universal stress protei 99.9 7.1E-23 2.4E-27 159.8 14.0 151 11-172 136-307 (319)
18 3olq_A Universal stress protei 99.9 1E-21 3.6E-26 153.2 16.2 135 37-173 3-153 (319)
19 1q77_A Hypothetical protein AQ 99.9 1E-21 3.6E-26 135.6 12.4 118 40-169 3-138 (138)
20 3mt0_A Uncharacterized protein 99.9 9.6E-22 3.3E-26 151.8 13.4 126 37-171 3-129 (290)
21 3ab8_A Putative uncharacterize 99.9 1.8E-21 6.2E-26 148.5 13.4 128 42-173 1-152 (268)
22 3loq_A Universal stress protei 99.9 5.3E-22 1.8E-26 153.5 10.0 132 37-172 18-164 (294)
23 3cis_A Uncharacterized protein 99.9 9.4E-21 3.2E-25 147.5 15.2 134 37-173 15-164 (309)
24 3ab8_A Putative uncharacterize 99.8 2.4E-20 8.2E-25 142.2 13.6 134 11-169 135-268 (268)
25 2iel_A Hypothetical protein TT 96.8 0.053 1.8E-06 36.5 12.7 123 42-168 2-133 (138)
26 1wy5_A TILS, hypothetical UPF0 93.9 0.69 2.4E-05 35.5 10.4 94 41-140 24-135 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 93.6 0.77 2.6E-05 37.3 10.7 94 42-140 19-129 (464)
28 2xry_A Deoxyribodipyrimidine p 93.6 0.61 2.1E-05 38.0 10.0 119 43-170 38-161 (482)
29 3umv_A Deoxyribodipyrimidine p 92.9 0.86 2.9E-05 37.5 9.8 121 42-170 38-168 (506)
30 3g40_A Na-K-CL cotransporter; 92.7 0.34 1.2E-05 36.8 6.7 104 54-174 178-281 (294)
31 1o97_C Electron transferring f 92.2 2.2 7.5E-05 32.0 10.7 103 46-166 31-143 (264)
32 1zun_A Sulfate adenylyltransfe 91.7 0.86 3E-05 35.2 8.1 94 40-141 45-157 (325)
33 1efv_B Electron transfer flavo 89.4 5.3 0.00018 29.7 11.5 99 49-166 37-147 (255)
34 1efp_B ETF, protein (electron 89.0 5.6 0.00019 29.5 11.0 99 49-166 34-144 (252)
35 3ih5_A Electron transfer flavo 89.0 3.1 0.00011 30.1 8.7 86 41-140 3-101 (217)
36 2wq7_A RE11660P; lyase-DNA com 87.2 4.3 0.00015 33.6 9.4 122 43-170 30-161 (543)
37 2oq2_A Phosphoadenosine phosph 86.3 6.6 0.00022 29.1 9.3 40 41-81 41-80 (261)
38 4b4k_A N5-carboxyaminoimidazol 86.3 6.5 0.00022 27.6 8.5 62 102-172 45-110 (181)
39 3kcq_A Phosphoribosylglycinami 86.0 6.3 0.00021 28.5 8.7 88 38-140 5-92 (215)
40 4grd_A N5-CAIR mutase, phospho 85.5 4.9 0.00017 28.0 7.5 61 102-171 35-99 (173)
41 2ywx_A Phosphoribosylaminoimid 83.7 6.8 0.00023 26.9 7.5 60 102-170 22-82 (157)
42 1iv0_A Hypothetical protein; r 83.6 4.3 0.00015 25.4 6.1 51 118-171 39-94 (98)
43 3tvs_A Cryptochrome-1; circadi 83.4 2.1 7E-05 35.5 5.8 114 49-169 13-135 (538)
44 1np7_A DNA photolyase; protein 83.0 8.2 0.00028 31.4 9.2 113 49-171 15-138 (489)
45 2wsi_A FAD synthetase; transfe 83.0 11 0.00038 28.6 9.4 94 42-143 54-170 (306)
46 3trh_A Phosphoribosylaminoimid 82.4 9 0.00031 26.6 7.8 62 102-172 29-94 (169)
47 1k92_A Argininosuccinate synth 81.8 19 0.00065 29.1 10.7 38 40-81 9-46 (455)
48 2c5s_A THII, probable thiamine 81.6 18 0.00062 28.7 10.8 97 38-141 184-301 (413)
49 1sur_A PAPS reductase; assimil 81.4 12 0.00041 26.5 10.9 88 42-141 45-158 (215)
50 3kuu_A Phosphoribosylaminoimid 81.3 9.4 0.00032 26.6 7.6 61 102-171 35-99 (174)
51 1xmp_A PURE, phosphoribosylami 80.6 10 0.00035 26.3 7.6 62 102-172 34-99 (170)
52 1ni5_A Putative cell cycle pro 80.6 11 0.00036 30.3 8.9 39 42-80 14-53 (433)
53 3oow_A Phosphoribosylaminoimid 79.9 12 0.00042 25.9 7.7 62 102-172 28-93 (166)
54 2hma_A Probable tRNA (5-methyl 79.4 12 0.00042 29.3 8.7 94 42-140 10-133 (376)
55 1owl_A Photolyase, deoxyribodi 79.1 13 0.00044 30.3 9.0 112 49-170 12-129 (484)
56 3rg8_A Phosphoribosylaminoimid 79.0 11 0.00039 25.8 7.4 61 102-171 25-90 (159)
57 3flu_A DHDPS, dihydrodipicolin 79.0 18 0.00063 27.2 11.9 128 37-170 4-141 (297)
58 3ors_A N5-carboxyaminoimidazol 78.4 13 0.00044 25.7 7.4 62 102-172 26-91 (163)
59 2nz2_A Argininosuccinate synth 78.2 21 0.00072 28.5 9.8 87 41-141 5-122 (413)
60 2e0i_A 432AA long hypothetical 78.0 8.1 0.00028 31.1 7.4 108 51-170 12-126 (440)
61 3lp6_A Phosphoribosylaminoimid 77.9 12 0.00041 26.1 7.2 61 102-171 30-94 (174)
62 2der_A TRNA-specific 2-thiouri 77.9 23 0.0008 27.8 10.3 97 40-141 16-143 (380)
63 1u11_A PURE (N5-carboxyaminoim 77.6 13 0.00045 26.1 7.4 62 102-172 44-109 (182)
64 2j4d_A Cryptochrome 3, cryptoc 77.6 12 0.00041 30.8 8.5 91 42-139 40-144 (525)
65 1o4v_A Phosphoribosylaminoimid 77.5 12 0.00042 26.2 7.3 62 102-172 36-101 (183)
66 2j07_A Deoxyribodipyrimidine p 77.0 11 0.00039 29.9 8.0 107 50-170 12-121 (420)
67 1xky_A Dihydrodipicolinate syn 75.1 24 0.00084 26.6 11.7 128 37-170 9-146 (301)
68 3zqu_A Probable aromatic acid 74.4 6.8 0.00023 28.2 5.5 38 39-77 2-39 (209)
69 2i2x_B MTAC, methyltransferase 74.3 18 0.00062 26.6 8.0 68 98-168 143-210 (258)
70 3fy4_A 6-4 photolyase; DNA rep 72.8 5.3 0.00018 33.1 5.1 111 49-169 14-139 (537)
71 1dnp_A DNA photolyase; DNA rep 71.5 19 0.00064 29.2 8.1 83 53-139 14-104 (471)
72 2yxg_A DHDPS, dihydrodipicolin 71.5 30 0.001 25.9 9.8 112 53-170 18-134 (289)
73 1o5k_A DHDPS, dihydrodipicolin 71.4 31 0.0011 26.1 9.7 126 39-170 12-146 (306)
74 1ccw_A Protein (glutamate muta 71.4 19 0.00065 23.7 7.4 68 98-168 23-91 (137)
75 2ywb_A GMP synthase [glutamine 71.3 40 0.0014 27.4 10.2 86 42-139 210-317 (503)
76 2dpl_A GMP synthetase, GMP syn 71.1 19 0.00064 27.4 7.6 89 42-140 21-130 (308)
77 3bl5_A Queuosine biosynthesis 70.8 24 0.00083 24.7 10.7 35 42-80 4-38 (219)
78 2ehh_A DHDPS, dihydrodipicolin 70.5 31 0.0011 25.9 10.4 112 53-170 18-134 (294)
79 1g63_A Epidermin modifying enz 68.5 6.3 0.00022 27.7 4.1 111 40-170 1-115 (181)
80 1kor_A Argininosuccinate synth 67.7 38 0.0013 26.8 8.9 37 42-81 1-37 (400)
81 2pju_A Propionate catabolism o 67.4 28 0.00097 25.2 7.6 61 99-172 29-92 (225)
82 1nu0_A Hypothetical protein YQ 67.2 5.1 0.00017 26.8 3.3 52 118-170 41-96 (138)
83 2rfg_A Dihydrodipicolinate syn 66.7 39 0.0013 25.4 8.6 111 53-169 18-133 (297)
84 2q5c_A NTRC family transcripti 66.5 17 0.00058 25.6 6.1 49 111-172 31-80 (196)
85 2a0u_A Initiation factor 2B; S 66.3 42 0.0014 26.5 8.8 62 102-170 233-298 (383)
86 1f6k_A N-acetylneuraminate lya 65.9 40 0.0014 25.3 10.8 111 53-169 21-137 (293)
87 2vc6_A MOSA, dihydrodipicolina 65.8 38 0.0013 25.4 8.3 111 53-169 18-133 (292)
88 3ecs_A Translation initiation 65.6 43 0.0015 25.6 9.0 105 44-171 124-232 (315)
89 3k32_A Uncharacterized protein 64.6 34 0.0012 24.0 8.0 38 40-81 5-42 (203)
90 1u3d_A Cryptochrome 1 apoprote 63.5 59 0.002 26.5 10.3 111 49-170 21-138 (509)
91 3d0c_A Dihydrodipicolinate syn 63.0 47 0.0016 25.2 8.5 110 53-169 30-144 (314)
92 1t9k_A Probable methylthioribo 63.0 49 0.0017 25.7 8.5 62 102-170 204-269 (347)
93 2v9d_A YAGE; dihydrodipicolini 62.9 50 0.0017 25.5 9.4 113 52-170 48-165 (343)
94 4ds3_A Phosphoribosylglycinami 62.1 40 0.0014 24.1 8.5 84 42-140 8-96 (209)
95 1qv9_A F420-dependent methylen 61.7 16 0.00056 26.9 5.2 45 121-170 55-99 (283)
96 1vhx_A Putative holliday junct 61.6 5 0.00017 27.2 2.4 55 117-172 42-100 (150)
97 3daq_A DHDPS, dihydrodipicolin 61.5 49 0.0017 24.8 9.0 113 52-170 19-136 (292)
98 3a5f_A Dihydrodipicolinate syn 61.3 48 0.0016 24.8 8.1 111 53-169 19-134 (291)
99 2ojp_A DHDPS, dihydrodipicolin 61.1 49 0.0017 24.7 8.9 112 53-170 19-135 (292)
100 1b93_A Protein (methylglyoxal 61.0 36 0.0012 23.1 8.3 105 39-166 9-117 (152)
101 3si9_A DHDPS, dihydrodipicolin 60.6 53 0.0018 25.0 10.8 128 37-170 19-156 (315)
102 2r8w_A AGR_C_1641P; APC7498, d 60.1 56 0.0019 25.0 10.0 124 41-170 35-168 (332)
103 3tqi_A GMP synthase [glutamine 59.0 20 0.00067 29.5 6.0 88 42-139 231-339 (527)
104 2yxb_A Coenzyme B12-dependent 58.8 29 0.00099 23.5 6.0 39 100-140 40-79 (161)
105 2yvk_A Methylthioribose-1-phos 58.5 44 0.0015 26.3 7.6 62 102-170 229-294 (374)
106 1y80_A Predicted cobalamin bin 58.3 19 0.00064 25.5 5.1 67 98-168 108-177 (210)
107 3tqr_A Phosphoribosylglycinami 57.7 50 0.0017 23.7 8.8 83 42-140 6-93 (215)
108 2o8v_A Phosphoadenosine phosph 57.6 52 0.0018 23.9 10.1 35 42-80 46-80 (252)
109 2ejb_A Probable aromatic acid 57.4 21 0.0007 25.2 5.1 34 42-76 2-35 (189)
110 3m5v_A DHDPS, dihydrodipicolin 57.3 59 0.002 24.4 11.2 115 51-170 23-142 (301)
111 3cpr_A Dihydrodipicolinate syn 57.2 60 0.002 24.5 10.4 112 53-170 34-150 (304)
112 3a11_A Translation initiation 57.0 33 0.0011 26.5 6.6 60 102-170 188-251 (338)
113 4dad_A Putative pilus assembly 56.9 35 0.0012 21.7 6.4 24 116-139 52-76 (146)
114 1w0d_A 3-isopropylmalate dehyd 56.7 48 0.0017 25.6 7.5 80 51-138 153-232 (337)
115 3dm5_A SRP54, signal recogniti 56.4 77 0.0026 25.5 10.3 88 47-145 107-197 (443)
116 1t5o_A EIF2BD, translation ini 56.3 49 0.0017 25.7 7.5 62 102-170 202-266 (351)
117 1wpw_A 3-isopropylmalate dehyd 56.2 45 0.0016 25.8 7.2 78 51-138 143-220 (336)
118 3h5d_A DHDPS, dihydrodipicolin 55.9 64 0.0022 24.4 8.2 52 117-170 87-142 (311)
119 3da8_A Probable 5'-phosphoribo 55.4 55 0.0019 23.5 8.1 82 42-140 13-99 (215)
120 3h5i_A Response regulator/sens 54.9 37 0.0013 21.4 9.2 55 115-173 35-89 (140)
121 3na8_A Putative dihydrodipicol 54.2 69 0.0024 24.3 8.9 125 40-170 24-158 (315)
122 2r91_A 2-keto-3-deoxy-(6-phosp 52.4 70 0.0024 23.8 8.8 52 117-170 75-130 (286)
123 3qjg_A Epidermin biosynthesis 52.4 23 0.00078 24.6 4.6 111 41-170 5-118 (175)
124 3fni_A Putative diflavin flavo 52.2 46 0.0016 22.3 6.1 10 131-140 57-66 (159)
125 3b4u_A Dihydrodipicolinate syn 51.4 74 0.0025 23.8 8.7 112 53-170 21-141 (294)
126 1vlc_A 3-isopropylmalate dehyd 50.7 69 0.0024 25.1 7.5 78 51-137 173-250 (366)
127 4e7p_A Response regulator; DNA 50.6 46 0.0016 21.2 6.0 45 122-170 58-102 (150)
128 1x0l_A Homoisocitrate dehydrog 50.6 73 0.0025 24.6 7.6 79 51-137 143-222 (333)
129 3hly_A Flavodoxin-like domain; 50.5 53 0.0018 21.9 6.7 34 106-141 29-62 (161)
130 3l21_A DHDPS, dihydrodipicolin 50.2 79 0.0027 23.8 10.2 112 53-170 33-149 (304)
131 3eod_A Protein HNR; response r 49.9 43 0.0015 20.6 8.0 47 121-171 42-88 (130)
132 1jq5_A Glycerol dehydrogenase; 49.6 65 0.0022 24.8 7.4 33 103-135 55-91 (370)
133 3vk5_A MOEO5; TIM barrel, tran 49.5 25 0.00086 26.6 4.7 47 122-170 58-105 (286)
134 3p9x_A Phosphoribosylglycinami 49.4 69 0.0024 22.9 9.8 84 42-140 3-91 (211)
135 1vbk_A Hypothetical protein PH 49.3 83 0.0028 23.8 9.6 87 38-140 176-265 (307)
136 2h31_A Multifunctional protein 49.3 44 0.0015 26.8 6.3 61 102-171 288-353 (425)
137 3nbm_A PTS system, lactose-spe 47.6 23 0.00079 22.4 3.7 58 102-172 30-88 (108)
138 3rjz_A N-type ATP pyrophosphat 47.4 57 0.002 23.8 6.3 91 42-139 5-99 (237)
139 3u1h_A 3-isopropylmalate dehyd 47.3 69 0.0024 25.3 7.0 77 52-137 186-262 (390)
140 3lou_A Formyltetrahydrofolate 46.8 90 0.0031 23.5 10.0 83 41-140 95-181 (292)
141 1sbz_A Probable aromatic acid 46.2 43 0.0015 23.7 5.3 34 43-76 2-35 (197)
142 3qze_A DHDPS, dihydrodipicolin 46.1 95 0.0032 23.5 9.4 125 40-170 23-157 (314)
143 3g40_A Na-K-CL cotransporter; 45.6 96 0.0033 23.5 12.5 120 42-170 21-146 (294)
144 3o1l_A Formyltetrahydrofolate 45.6 97 0.0033 23.5 10.3 83 41-140 105-191 (302)
145 2f6u_A GGGPS, (S)-3-O-geranylg 45.3 26 0.00088 25.6 4.1 49 119-171 22-70 (234)
146 3tak_A DHDPS, dihydrodipicolin 45.1 94 0.0032 23.2 11.0 112 53-170 19-135 (291)
147 3n0v_A Formyltetrahydrofolate 44.4 98 0.0033 23.2 10.1 83 41-140 90-176 (286)
148 3w01_A Heptaprenylglyceryl pho 44.4 29 0.001 25.4 4.3 47 121-171 27-73 (235)
149 3vzx_A Heptaprenylglyceryl pho 44.0 21 0.0007 26.1 3.4 47 121-171 22-68 (228)
150 3flk_A Tartrate dehydrogenase/ 43.9 1.1E+02 0.0037 24.0 7.7 79 51-137 165-244 (364)
151 2p0y_A Hypothetical protein LP 43.3 26 0.00089 27.2 4.0 49 118-170 178-228 (341)
152 2amj_A Modulator of drug activ 43.2 82 0.0028 22.0 9.0 35 106-142 47-82 (204)
153 4f2d_A L-arabinose isomerase; 43.2 1.3E+02 0.0046 24.5 11.8 75 88-170 25-105 (500)
154 3vmk_A 3-isopropylmalate dehyd 43.2 85 0.0029 24.7 7.0 77 52-137 179-255 (375)
155 3i42_A Response regulator rece 42.9 56 0.0019 19.9 8.8 50 120-173 37-88 (127)
156 3udu_A 3-isopropylmalate dehyd 42.8 84 0.0029 24.6 6.9 77 52-137 167-243 (361)
157 1p3y_1 MRSD protein; flavoprot 42.7 31 0.0011 24.3 4.1 110 41-170 8-123 (194)
158 3to5_A CHEY homolog; alpha(5)b 42.4 68 0.0023 20.8 6.4 52 116-172 44-97 (134)
159 3kl4_A SRP54, signal recogniti 42.4 1.3E+02 0.0044 24.0 8.8 84 49-143 106-192 (433)
160 3hdg_A Uncharacterized protein 42.3 60 0.002 20.1 5.4 46 122-171 43-88 (137)
161 3ezx_A MMCP 1, monomethylamine 42.3 55 0.0019 23.3 5.5 68 97-168 111-183 (215)
162 1dd9_A DNA primase, DNAG; topr 42.0 1.2E+02 0.004 23.4 7.6 38 41-78 206-246 (338)
163 3eb2_A Putative dihydrodipicol 41.8 1.1E+02 0.0037 23.0 9.1 113 53-171 22-139 (300)
164 1meo_A Phosophoribosylglycinam 41.8 91 0.0031 22.1 11.6 105 42-171 1-110 (209)
165 2ppv_A Uncharacterized protein 41.7 30 0.001 26.7 4.2 52 117-172 166-219 (332)
166 2o2z_A Hypothetical protein; s 41.6 32 0.0011 26.5 4.3 52 117-172 167-220 (323)
167 2pg3_A Queuosine biosynthesis 41.2 93 0.0032 22.0 11.3 35 42-80 3-37 (232)
168 3f6p_A Transcriptional regulat 41.1 59 0.002 19.7 7.6 50 116-171 33-82 (120)
169 1w3i_A EDA, 2-keto-3-deoxy glu 40.4 1.1E+02 0.0038 22.8 8.1 52 117-170 76-131 (293)
170 3bul_A Methionine synthase; tr 40.4 50 0.0017 27.6 5.6 69 97-169 117-186 (579)
171 3blx_A Isocitrate dehydrogenas 40.3 1.3E+02 0.0044 23.4 8.1 81 50-137 155-236 (349)
172 2l2q_A PTS system, cellobiose- 40.2 66 0.0023 20.0 5.3 56 102-170 28-84 (109)
173 2xxa_A Signal recognition part 39.5 1.4E+02 0.0049 23.7 10.0 92 42-143 101-196 (433)
174 2gkg_A Response regulator homo 39.1 63 0.0021 19.5 7.2 44 122-168 41-86 (127)
175 3ty4_A Probable homoisocitrate 38.6 89 0.003 24.5 6.4 81 52-137 162-255 (366)
176 3m47_A Orotidine 5'-phosphate 38.5 1.1E+02 0.0037 22.0 8.4 32 41-77 12-43 (228)
177 2nuw_A 2-keto-3-deoxygluconate 38.5 1.2E+02 0.0041 22.5 7.4 52 117-170 76-131 (288)
178 2xw6_A MGS, methylglyoxal synt 38.4 70 0.0024 21.1 5.1 102 42-166 4-109 (134)
179 2wkj_A N-acetylneuraminate lya 38.3 1.2E+02 0.0043 22.7 10.5 112 53-169 29-145 (303)
180 4drs_A Pyruvate kinase; glycol 38.2 74 0.0025 26.3 6.1 45 118-171 412-456 (526)
181 3hv2_A Response regulator/HD d 38.1 77 0.0026 20.2 8.2 51 116-171 45-95 (153)
182 2y3z_A 3-isopropylmalate dehyd 37.8 1.2E+02 0.0041 23.6 7.0 78 52-138 163-240 (359)
183 1uf3_A Hypothetical protein TT 37.8 56 0.0019 22.5 5.0 9 163-171 64-72 (228)
184 1f76_A Dihydroorotate dehydrog 37.6 1.3E+02 0.0045 22.7 10.6 34 106-139 211-247 (336)
185 3en0_A Cyanophycinase; serine 37.5 62 0.0021 24.4 5.3 94 54-158 41-138 (291)
186 2ywr_A Phosphoribosylglycinami 37.0 1.1E+02 0.0038 21.7 10.7 104 42-170 2-110 (216)
187 1vb5_A Translation initiation 36.9 1.3E+02 0.0043 22.4 9.0 59 105-172 159-221 (276)
188 3e96_A Dihydrodipicolinate syn 36.8 1.3E+02 0.0046 22.6 7.7 110 53-169 30-144 (316)
189 3dff_A Teicoplanin pseudoaglyc 36.5 1.3E+02 0.0043 22.2 10.2 49 119-168 137-185 (273)
190 2zay_A Response regulator rece 36.5 79 0.0027 19.8 6.5 51 116-171 39-91 (147)
191 2q7x_A UPF0052 protein SP_1565 36.3 41 0.0014 25.9 4.2 49 118-170 174-224 (326)
192 1cnz_A IPMDH, IMDH, protein (3 36.1 1.3E+02 0.0044 23.5 7.0 78 51-137 169-246 (363)
193 3r8w_A 3-isopropylmalate dehyd 36.1 1.3E+02 0.0045 23.9 7.1 78 51-137 206-283 (405)
194 3gg8_A Pyruvate kinase; malari 36.0 83 0.0028 25.9 6.1 45 118-171 397-441 (511)
195 2qxy_A Response regulator; reg 35.6 80 0.0027 19.6 7.7 46 121-171 39-84 (142)
196 3iwt_A 178AA long hypothetical 35.5 98 0.0033 21.0 5.8 39 100-138 47-89 (178)
197 1qzu_A Hypothetical protein MD 35.4 38 0.0013 24.1 3.6 36 41-76 19-54 (206)
198 3grc_A Sensor protein, kinase; 35.3 80 0.0027 19.6 7.7 48 120-171 40-89 (140)
199 1a3w_A Pyruvate kinase; allost 35.2 75 0.0026 26.0 5.7 46 118-172 382-427 (500)
200 3blx_B Isocitrate dehydrogenas 35.1 1.3E+02 0.0045 23.4 6.9 80 50-137 161-243 (354)
201 3b2n_A Uncharacterized protein 35.1 80 0.0027 19.5 6.3 46 122-171 41-86 (133)
202 1viz_A PCRB protein homolog; s 35.0 45 0.0015 24.4 4.0 49 119-171 22-70 (240)
203 3cg4_A Response regulator rece 35.0 81 0.0028 19.6 8.2 49 120-172 41-91 (142)
204 3khd_A Pyruvate kinase; malari 35.0 90 0.0031 25.7 6.1 44 119-171 407-450 (520)
205 1vl2_A Argininosuccinate synth 34.8 1.7E+02 0.0059 23.3 9.8 38 39-80 12-49 (421)
206 1a05_A IPMDH, IMDH, 3-isopropy 34.7 1.4E+02 0.0049 23.2 7.1 78 51-137 164-241 (358)
207 3inp_A D-ribulose-phosphate 3- 34.6 38 0.0013 24.9 3.6 37 102-139 189-225 (246)
208 3hzh_A Chemotaxis response reg 34.4 92 0.0031 20.0 8.1 10 130-139 83-92 (157)
209 3hqn_D Pyruvate kinase, PK; TI 34.3 93 0.0032 25.5 6.1 44 119-171 382-425 (499)
210 1ta9_A Glycerol dehydrogenase; 34.1 1.8E+02 0.0061 23.3 8.2 62 101-172 113-179 (450)
211 3rqi_A Response regulator prot 33.7 1E+02 0.0036 20.4 6.7 51 116-171 38-88 (184)
212 2au3_A DNA primase; zinc ribbo 33.7 89 0.003 24.6 5.9 36 42-77 288-323 (407)
213 3cu2_A Ribulose-5-phosphate 3- 33.5 1.4E+02 0.0046 21.7 6.8 49 89-139 169-219 (237)
214 3gxq_A Putative regulator of t 33.5 48 0.0016 17.3 2.8 25 109-133 12-37 (54)
215 1vmd_A MGS, methylglyoxal synt 33.4 1.1E+02 0.0037 21.3 5.6 102 40-166 26-133 (178)
216 3cu5_A Two component transcrip 32.9 92 0.0031 19.5 5.8 47 121-171 40-86 (141)
217 1e0t_A Pyruvate kinase, PK; ph 32.7 88 0.003 25.4 5.7 45 118-171 358-402 (470)
218 3n53_A Response regulator rece 32.5 91 0.0031 19.3 7.9 52 116-172 33-86 (140)
219 2rjn_A Response regulator rece 32.5 97 0.0033 19.6 7.1 48 120-171 41-88 (154)
220 3snk_A Response regulator CHEY 32.4 90 0.0031 19.3 5.2 43 125-171 54-96 (135)
221 3hdv_A Response regulator; PSI 31.9 91 0.0031 19.2 7.7 23 117-139 39-61 (136)
222 3obi_A Formyltetrahydrofolate 31.8 1.5E+02 0.005 22.2 6.5 85 40-140 88-176 (288)
223 2lpm_A Two-component response 31.8 1E+02 0.0035 19.7 5.5 48 116-170 40-87 (123)
224 2d1c_A Isocitrate dehydrogenas 31.7 1.8E+02 0.0063 23.7 7.4 79 52-138 165-244 (496)
225 3p52_A NH(3)-dependent NAD(+) 31.6 1.5E+02 0.0051 21.5 6.8 38 40-80 25-62 (249)
226 3i65_A Dihydroorotate dehydrog 30.7 2E+02 0.0069 22.8 10.8 63 107-170 269-353 (415)
227 3lqk_A Dipicolinate synthase s 30.6 49 0.0017 23.4 3.6 35 41-76 7-42 (201)
228 1tmy_A CHEY protein, TMY; chem 30.5 89 0.003 18.6 8.0 43 124-170 41-83 (120)
229 2q62_A ARSH; alpha/beta, flavo 30.1 1.3E+02 0.0046 21.7 6.0 39 42-80 35-76 (247)
230 3cnb_A DNA-binding response re 29.9 1E+02 0.0034 19.0 6.4 47 121-171 45-93 (143)
231 3eul_A Possible nitrate/nitrit 29.5 1.1E+02 0.0037 19.3 8.3 47 121-171 52-98 (152)
232 1qkk_A DCTD, C4-dicarboxylate 29.4 1.1E+02 0.0038 19.4 7.0 47 120-170 37-83 (155)
233 3exr_A RMPD (hexulose-6-phosph 29.1 1.5E+02 0.0053 21.0 8.0 31 42-77 6-36 (221)
234 2l69_A Rossmann 2X3 fold prote 29.1 1E+02 0.0036 19.0 6.0 73 42-129 51-124 (134)
235 3cz5_A Two-component response 29.0 1.1E+02 0.0038 19.3 6.3 44 123-170 44-87 (153)
236 3kht_A Response regulator; PSI 29.0 1.1E+02 0.0037 19.1 7.3 51 116-171 38-90 (144)
237 3gr4_A Pyruvate kinase isozyme 29.0 1E+02 0.0036 25.6 5.6 44 119-171 432-475 (550)
238 1w2w_B 5-methylthioribose-1-ph 28.8 30 0.001 24.4 2.2 63 102-171 26-94 (191)
239 2rdm_A Response regulator rece 28.7 1E+02 0.0035 18.7 9.3 46 123-171 42-88 (132)
240 1y5e_A Molybdenum cofactor bio 28.7 1.4E+02 0.0047 20.2 6.0 34 104-137 42-79 (169)
241 4edg_A DNA primase; catalytic 28.5 51 0.0018 25.3 3.6 37 41-77 195-231 (329)
242 2qsj_A DNA-binding response re 28.3 1.1E+02 0.0039 19.2 5.1 51 116-171 36-87 (154)
243 3rpe_A MDAB, modulator of drug 28.2 1.6E+02 0.0056 20.9 8.2 25 54-78 45-69 (218)
244 2e0c_A 409AA long hypothetical 28.1 2.3E+02 0.0077 22.5 7.9 29 51-79 196-225 (409)
245 1mvl_A PPC decarboxylase athal 28.0 82 0.0028 22.4 4.4 34 41-76 19-52 (209)
246 1xng_A NH(3)-dependent NAD(+) 27.6 1.5E+02 0.0051 21.6 5.9 36 41-79 25-60 (268)
247 1gpm_A GMP synthetase, XMP ami 27.5 2.5E+02 0.0086 22.9 8.0 88 42-139 228-337 (525)
248 3ctl_A D-allulose-6-phosphate 27.4 80 0.0027 22.8 4.3 37 102-139 161-198 (231)
249 3t05_A Pyruvate kinase, PK; te 27.4 1.3E+02 0.0045 25.3 6.0 44 119-171 381-424 (606)
250 2e28_A Pyruvate kinase, PK; al 27.3 1.4E+02 0.0048 25.0 6.2 45 118-171 361-405 (587)
251 2vzf_A NADH-dependent FMN redu 27.1 1.5E+02 0.0052 20.2 6.5 39 42-80 3-45 (197)
252 3klo_A Transcriptional regulat 27.1 1.5E+02 0.0053 20.3 6.9 53 115-171 39-92 (225)
253 2qr3_A Two-component system re 27.1 1.1E+02 0.0039 18.7 7.1 48 120-170 37-88 (140)
254 3fkr_A L-2-keto-3-deoxyarabona 26.8 2E+02 0.0069 21.6 8.6 113 53-171 26-146 (309)
255 2is8_A Molybdopterin biosynthe 26.6 1.5E+02 0.005 19.9 5.8 8 130-137 62-69 (164)
256 3f4w_A Putative hexulose 6 pho 26.6 1.6E+02 0.0054 20.3 7.5 33 107-139 54-86 (211)
257 3mcu_A Dipicolinate synthase, 26.2 79 0.0027 22.5 4.0 35 42-77 6-41 (207)
258 1xrs_A D-lysine 5,6-aminomutas 26.0 2.3E+02 0.0077 23.0 6.7 32 108-139 152-185 (516)
259 3n4p_A Terminase subunit UL89 26.0 2.1E+02 0.0071 21.4 8.9 95 39-136 129-237 (279)
260 3qxc_A Dethiobiotin synthetase 25.9 1.4E+02 0.0047 21.6 5.4 51 119-171 118-170 (242)
261 1o97_D Electron transferring f 25.9 2.2E+02 0.0075 21.6 10.1 75 51-140 15-97 (320)
262 2ohh_A Type A flavoprotein FPR 25.7 2.2E+02 0.0076 21.7 9.6 90 43-142 227-319 (404)
263 2l8b_A Protein TRAI, DNA helic 25.6 1.2E+02 0.004 21.4 4.6 42 118-166 137-178 (189)
264 3qtg_A Pyruvate kinase, PK; TI 25.6 1.3E+02 0.0045 24.3 5.5 42 120-171 364-405 (461)
265 2yva_A DNAA initiator-associat 25.5 1.1E+02 0.0037 20.8 4.6 37 40-77 108-144 (196)
266 3lua_A Response regulator rece 25.4 1.2E+02 0.0043 18.6 5.5 47 122-171 41-90 (140)
267 1h5y_A HISF; histidine biosynt 25.4 1.6E+02 0.0053 20.7 5.6 50 119-169 156-205 (253)
268 1x92_A APC5045, phosphoheptose 25.2 1.1E+02 0.0037 20.9 4.6 37 40-77 112-148 (199)
269 3qi7_A Putative transcriptiona 24.8 2.5E+02 0.0086 21.9 8.3 93 43-139 14-120 (371)
270 3uhj_A Probable glycerol dehyd 24.7 1.7E+02 0.0057 22.9 6.0 14 120-133 96-109 (387)
271 3tdn_A FLR symmetric alpha-bet 24.7 1.6E+02 0.0056 20.9 5.6 13 154-167 72-84 (247)
272 3jte_A Response regulator rece 24.7 1.3E+02 0.0044 18.6 9.0 40 128-171 47-86 (143)
273 4e0q_A COP9 signalosome comple 24.3 93 0.0032 20.5 3.9 50 118-168 71-120 (141)
274 2hmc_A AGR_L_411P, dihydrodipi 24.3 2.4E+02 0.0083 21.6 8.8 52 117-170 103-159 (344)
275 3nrb_A Formyltetrahydrofolate 24.2 2.3E+02 0.0077 21.2 6.4 85 40-140 87-175 (287)
276 3kto_A Response regulator rece 23.9 86 0.0029 19.4 3.6 44 124-170 44-88 (136)
277 3ayv_A Putative uncharacterize 23.8 1.9E+02 0.0066 20.3 6.1 75 55-130 75-154 (254)
278 3ajx_A 3-hexulose-6-phosphate 23.7 1.8E+02 0.0061 19.9 7.9 83 43-137 2-84 (207)
279 3cg0_A Response regulator rece 23.6 1.3E+02 0.0046 18.4 8.8 46 122-171 46-91 (140)
280 2iv0_A Isocitrate dehydrogenas 23.6 2.8E+02 0.0095 22.0 8.9 28 52-79 197-225 (412)
281 1srr_A SPO0F, sporulation resp 23.6 1.3E+02 0.0043 18.1 8.2 45 122-170 39-83 (124)
282 2uxq_A Isocitrate dehydrogenas 23.5 2E+02 0.0069 22.7 6.2 29 52-80 184-212 (402)
283 3gt7_A Sensor protein; structu 23.5 1.5E+02 0.005 18.8 8.8 47 121-171 42-90 (154)
284 2qv7_A Diacylglycerol kinase D 23.5 2.4E+02 0.0081 21.2 8.1 94 41-147 24-123 (337)
285 2goy_A Adenosine phosphosulfat 23.4 1.5E+02 0.005 21.8 5.2 35 42-81 55-89 (275)
286 1m3s_A Hypothetical protein YC 23.3 1.2E+02 0.0039 20.4 4.4 35 42-77 80-114 (186)
287 3of5_A Dethiobiotin synthetase 23.3 1E+02 0.0035 21.9 4.2 48 120-169 97-147 (228)
288 3s5o_A 4-hydroxy-2-oxoglutarat 23.1 2.4E+02 0.0082 21.1 9.3 111 52-170 31-150 (307)
289 3dms_A Isocitrate dehydrogenas 23.1 2.9E+02 0.0099 22.1 7.4 28 52-79 214-242 (427)
290 3sho_A Transcriptional regulat 23.0 1.2E+02 0.004 20.4 4.3 34 42-76 88-121 (187)
291 4aoy_A Isocitrate dehydrogenas 22.8 2E+02 0.0067 22.8 6.0 28 52-79 185-212 (402)
292 1tyo_A Isocitrate dehydrogenas 22.7 3E+02 0.01 22.1 7.7 30 50-79 205-235 (435)
293 2jk1_A HUPR, hydrogenase trans 22.5 1.4E+02 0.0049 18.3 5.3 13 127-139 41-53 (139)
294 1tk9_A Phosphoheptose isomeras 22.4 1.4E+02 0.0046 20.0 4.6 36 41-77 110-145 (188)
295 3av3_A Phosphoribosylglycinami 22.3 2.1E+02 0.0072 20.2 11.2 105 42-171 4-113 (212)
296 2j48_A Two-component sensor ki 22.3 1.3E+02 0.0043 17.5 8.2 51 116-171 32-84 (119)
297 3auf_A Glycinamide ribonucleot 22.2 2.2E+02 0.0076 20.4 11.5 104 42-170 23-131 (229)
298 2pju_A Propionate catabolism o 22.2 2.2E+02 0.0075 20.4 10.2 64 60-137 97-161 (225)
299 3f6c_A Positive transcription 22.2 1.4E+02 0.0048 18.1 9.0 45 124-172 40-84 (134)
300 2pl1_A Transcriptional regulat 22.0 1.3E+02 0.0046 17.8 8.5 47 121-171 35-81 (121)
301 2q5c_A NTRC family transcripti 22.0 2E+02 0.007 19.9 11.2 83 60-170 85-168 (196)
302 3zwt_A Dihydroorotate dehydrog 21.9 2.8E+02 0.0096 21.5 11.0 64 106-170 220-306 (367)
303 3a10_A Response regulator; pho 21.9 1.3E+02 0.0045 17.7 8.0 45 122-170 37-81 (116)
304 1yio_A Response regulatory pro 21.8 1.9E+02 0.0064 19.4 8.2 46 122-171 40-85 (208)
305 3av0_A DNA double-strand break 21.8 83 0.0028 24.3 3.7 13 70-82 19-31 (386)
306 3us8_A Isocitrate dehydrogenas 21.7 2.4E+02 0.0081 22.5 6.3 28 52-79 208-235 (427)
307 2ffh_A Protein (FFH); SRP54, s 21.7 3E+02 0.01 21.8 10.6 85 48-143 106-193 (425)
308 2g2c_A Putative molybdenum cof 21.7 1.9E+02 0.0065 19.4 5.3 35 103-137 39-76 (167)
309 2xhz_A KDSD, YRBH, arabinose 5 21.6 1.2E+02 0.0042 20.2 4.2 33 42-75 97-129 (183)
310 3qw3_A Orotidine-5-phosphate d 21.5 2.4E+02 0.0083 20.6 6.6 96 41-139 13-113 (255)
311 2yvq_A Carbamoyl-phosphate syn 21.3 86 0.0029 20.7 3.2 98 44-166 27-129 (143)
312 3txv_A Probable tagatose 6-pho 21.3 1E+02 0.0034 24.9 4.0 55 117-172 32-95 (450)
313 3lwd_A 6-phosphogluconolactona 21.1 2.3E+02 0.0079 20.2 7.9 105 42-151 33-146 (226)
314 1g0y_I Antagonist peptide AF10 21.0 29 0.00098 15.4 0.5 17 5-21 6-22 (26)
315 1ii7_A MRE11 nuclease; RAD50, 20.8 1.5E+02 0.0051 22.2 4.9 9 73-81 2-10 (333)
316 3o3m_A Alpha subunit 2-hydroxy 20.8 83 0.0028 24.8 3.5 57 117-174 321-377 (408)
317 3o1i_D Periplasmic protein TOR 20.7 2.4E+02 0.0081 20.1 9.2 61 100-168 29-93 (304)
318 2xbl_A Phosphoheptose isomeras 20.6 1.5E+02 0.0052 20.0 4.6 36 41-77 116-151 (198)
319 1nui_A DNA primase/helicase; z 20.6 83 0.0029 22.8 3.3 34 40-75 198-231 (255)
320 1vim_A Hypothetical protein AF 20.3 1.2E+02 0.004 20.9 3.9 37 41-78 89-125 (200)
321 3m6m_D Sensory/regulatory prot 20.3 1.7E+02 0.0058 18.3 8.4 19 121-139 49-67 (143)
322 1mkz_A Molybdenum cofactor bio 20.3 2.1E+02 0.0071 19.3 6.0 35 103-137 38-76 (172)
323 1jeo_A MJ1247, hypothetical pr 20.2 1.3E+02 0.0044 20.1 4.1 35 42-77 83-117 (180)
324 2b4a_A BH3024; flavodoxin-like 20.2 1.6E+02 0.0055 18.0 7.7 49 116-169 46-95 (138)
325 3n0r_A Response regulator; sig 20.1 2.6E+02 0.0089 20.4 9.3 67 99-172 177-243 (286)
326 1rtt_A Conserved hypothetical 20.1 1.2E+02 0.004 20.6 3.9 36 43-79 8-46 (193)
327 2y88_A Phosphoribosyl isomeras 20.0 2E+02 0.0068 20.3 5.3 49 119-169 151-200 (244)
No 1
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.95 E-value=1.3e-26 Score=162.48 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=99.7
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-------------hHHHHHHHHHHHHHHHHhh
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------------IVYDMSQGLMEKLAIEAMD 103 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-------------~~~~~~~~~l~~~~~~~~~ 103 (179)
.|+++++||||+|+++.+..++++|..+|+..+++++++||.+..... ...+...+..++.+++..+
T Consensus 2 ~m~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (150)
T 3tnj_A 2 HMSVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGN 81 (150)
T ss_dssp --CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999998753210 1122233333333444444
Q ss_pred hcCce-eEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 104 VAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 104 ~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..++. +++.+..|++.+.|+++++++++||||||+++++.+. +++||++++++++++ ||||+||+..
T Consensus 82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~-~pVlvv~~~~ 149 (150)
T 3tnj_A 82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAK-CDVLAVRLRD 149 (150)
T ss_dssp HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCS-SEEEEEECCC
T ss_pred HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCC-CCEEEEeCCC
Confidence 44666 4677888999999999999999999999999999999 999999999999999 9999999863
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.94 E-value=8.7e-26 Score=157.52 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=108.1
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh-------------HHHHHHHHHHHHHHHHhhhc
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-------------VYDMSQGLMEKLAIEAMDVA 105 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~ 105 (179)
+++++||||+|+++.+..++++|..+|+..+++++++||.+...... ..+..++.++.+.+ .+...
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 81 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQ-FVATT 81 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHH-HHTTS
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 47899999999999999999999999999999999999987643211 01222333443332 23455
Q ss_pred Cc-eeEEEEecCChHHHHHH-HHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 106 MV-RTKARIVEGDAAKVICK-EAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 106 ~~-~~~~~~~~g~~~~~I~~-~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
|+ ++++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++ ||||+||
T Consensus 82 g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV~ 146 (146)
T 3s3t_A 82 SAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAP-CNVIVIR 146 (146)
T ss_dssp SCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCS-SEEEEEC
T ss_pred CCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCC-CCEEEeC
Confidence 78 88989999999999999 9999999999999999999999999999999999999 9999996
No 3
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.94 E-value=6.9e-26 Score=156.70 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=103.8
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh-------HHHHHHHHHHHHHHHHhhhcCc-eeEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-------VYDMSQGLMEKLAIEAMDVAMV-RTKA 111 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~-~~~~ 111 (179)
|+++||||+|+++.+..++++|..+|+..+++++++||.+...... ..+...+..++.+++..+..|+ ++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 80 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDA 80 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCCGGGE
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCCccEE
Confidence 4699999999999999999999999999999999999987432100 1111122223333333333577 7777
Q ss_pred EEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 112 RIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 112 ~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++ |||++||
T Consensus 81 ~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvv~ 137 (137)
T 2z08_A 81 LLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAP-CPVLLVR 137 (137)
T ss_dssp EEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCS-SCEEEEC
T ss_pred EEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCC-CCEEEeC
Confidence 78899999999999999999999999999999999999999999999999 9999996
No 4
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.94 E-value=2.5e-25 Score=157.97 Aligned_cols=131 Identities=22% Similarity=0.304 Sum_probs=107.2
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC-----c---h--------hh-------HH----HHHHH
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV-----Q---N--------QI-------VY----DMSQG 92 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~-----~---~--------~~-------~~----~~~~~ 92 (179)
++++||||+|+++.+..++++|..+|+..+++++++||.+.. . . .. .. +..++
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999998643 1 1 00 00 11122
Q ss_pred HHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 93 LMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.++.+.+ .+...|+++++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++ |||++||+.+
T Consensus 84 ~l~~~~~-~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~-~pVlvv~~~~ 161 (162)
T 1mjh_A 84 KMENIKK-ELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSN-KPVLVVKRKN 161 (162)
T ss_dssp HHHHHHH-HHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCC-SCEEEECCCC
T ss_pred HHHHHHH-HHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCC-CCEEEEeCCC
Confidence 3333222 2345678888888889999999999999999999999999999999999999999999999 9999998754
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=1.1e-25 Score=157.05 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=106.9
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCc-----------------hhhHHHHHHHHHHHHHHHHh
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ-----------------NQIVYDMSQGLMEKLAIEAM 102 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~-----------------~~~~~~~~~~~l~~~~~~~~ 102 (179)
|+++||||+|+++.+..++++|..+|+..+++++++||.+... .....+..++.++.+. +.+
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 79 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAK-TRA 79 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHH-HHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHH-HHH
Confidence 5799999999999999999999999999999999999987532 0111233344444433 334
Q ss_pred hhcCcee---EEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 103 DVAMVRT---KARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 103 ~~~~~~~---~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
...|+++ ++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++ ||||+|
T Consensus 80 ~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV 147 (147)
T 3hgm_A 80 TELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAH-CPVLVV 147 (147)
T ss_dssp HHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCS-SCEEEC
T ss_pred HhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCC-CCEEEC
Confidence 5567777 8888999999999999999999999999999999999999999999999999 999986
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=3e-25 Score=158.76 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=107.7
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------------------h----HHHHHHHHHHH
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------------------I----VYDMSQGLMEK 96 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------------------~----~~~~~~~~l~~ 96 (179)
.++++||||+|+++.+..++++|..+|+..+++++++||.+..... . ..+..++.++.
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998653210 0 01222334444
Q ss_pred HHHHHhhhcCceeEE--EEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 97 LAIEAMDVAMVRTKA--RIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~--~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
+.+. +...|+++++ .+..|++.+.|+++|++.++||||||+++++.+.++++||++++|+++++ ||||+||+...+
T Consensus 83 ~~~~-~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~-~PVlvv~~~~~~ 160 (170)
T 2dum_A 83 KAEE-VKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTK-KPVLIIKEVDEN 160 (170)
T ss_dssp HHHH-HHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCS-SCEEEECCCCCC
T ss_pred HHHH-HHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCC-CCEEEEccCCcc
Confidence 3332 3445788887 88889999999999999999999999999999999999999999999999 999999976544
No 7
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.93 E-value=3.4e-25 Score=158.00 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=106.9
Q ss_pred ccccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEE--EEecCCch-hh-----------HHHHHHHHHHHHHHHH
Q 030298 36 GERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV--HAVSSVQN-QI-----------VYDMSQGLMEKLAIEA 101 (179)
Q Consensus 36 ~~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v--~v~~~~~~-~~-----------~~~~~~~~l~~~~~~~ 101 (179)
....++++||||+|+++.+..++++|..+|+ .+++++++ ||.+.... .. ..+..++.++.+.+.
T Consensus 12 ~~~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 89 (163)
T 1tq8_A 12 MSLSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKER- 89 (163)
T ss_dssp -CCCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHH-
T ss_pred cccccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456789999999999999999999999999 99999999 87654321 00 011233444443333
Q ss_pred hhhcCce-eEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 102 MDVAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 102 ~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+...+++ +++.+..|++.+.|+++|++.++||||||+++++.+.++++||++++|+++++ ||||+||+...
T Consensus 90 ~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~-~PVlvV~~~~~ 161 (163)
T 1tq8_A 90 AHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAK-VDVLIVHTTEG 161 (163)
T ss_dssp HHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTT-CEEEEECCC--
T ss_pred HHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCC-CCEEEEeCCCC
Confidence 3445787 88888899999999999999999999999999999999999999999999999 99999987543
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.93 E-value=8e-25 Score=154.86 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=107.2
Q ss_pred cccCCCeEEEEecC-CcchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEE-
Q 030298 37 ERRRGRDILIAVDH-GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKAR- 112 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~-s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~- 112 (179)
..++|++||||+|+ ++.+..++++|..+|+..+++++++||.+.... ....+..++.++...+ .+...++++++.
T Consensus 20 ~~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~g~~~~~~~ 98 (155)
T 3dlo_A 20 QGMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVS-IIRKEGAEGEEHL 98 (155)
T ss_dssp --CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHH-HHHHTTCCEEEEE
T ss_pred cccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHH-HHHhcCCCceEEE
Confidence 34689999999999 999999999999999999999999999875432 1222344445555333 344456666644
Q ss_pred -EecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 113 -IVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 113 -~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+..|++.+.|+++|++.++||||||+++++.+.++++||++++++++++ ||||+|+
T Consensus 99 ~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~-~PVLvVr 155 (155)
T 3dlo_A 99 LVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKAN-KPVICIK 155 (155)
T ss_dssp EESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCS-SCEEEEC
T ss_pred EecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCC-CCEEEeC
Confidence 5569999999999999999999999999999999999999999999999 9999996
No 9
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.93 E-value=1.5e-24 Score=153.06 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=106.1
Q ss_pred cccCCCeEEEEec--CCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-------h----HHHHHHHHHHHHHHHHhh
Q 030298 37 ERRRGRDILIAVD--HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------I----VYDMSQGLMEKLAIEAMD 103 (179)
Q Consensus 37 ~~~~~~~Ilv~vd--~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-------~----~~~~~~~~l~~~~~~~~~ 103 (179)
.++++++||||+| +++.+..++++|..+|+..+++++++||.+..... . ..+..++.++.+.+. +.
T Consensus 11 ~~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 89 (156)
T 3fg9_A 11 EPLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQL-AE 89 (156)
T ss_dssp SCCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3568899999999 99999999999999999999999999998864321 1 112333444443333 44
Q ss_pred hcCc-eeEEEEec-CChHHHHHHH-HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 104 VAMV-RTKARIVE-GDAAKVICKE-AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 104 ~~~~-~~~~~~~~-g~~~~~I~~~-a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
..|+ .+++.+.. |++.+.|+++ |++.++||||||+++++.+. .++||++++++++++ ||||+||
T Consensus 90 ~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~-~PVlvV~ 156 (156)
T 3fg9_A 90 QRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAP-ISVIVVR 156 (156)
T ss_dssp HHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCS-SEEEEEC
T ss_pred HcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCC-CCEEEeC
Confidence 5577 58888888 9999999999 99999999999999999887 489999999999999 9999996
No 10
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.93 E-value=1.4e-24 Score=150.04 Aligned_cols=124 Identities=17% Similarity=0.262 Sum_probs=103.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHh-ccCCCEEEEEEEecCCchhhH--------H-----HHHHHHHHHHHHHHhhhcC
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHL-CRLADTIHLVHAVSSVQNQIV--------Y-----DMSQGLMEKLAIEAMDVAM 106 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la-~~~~~~l~~v~v~~~~~~~~~--------~-----~~~~~~l~~~~~~~~~~~~ 106 (179)
+++||||+|+++.+..++++|..+| +..+++++++||.+....... . +..++.++.+. +.+...|
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~g 79 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFS-TFFTEKG 79 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTT
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHH-HHHHHCC
Confidence 4799999999999999999999999 999999999999886542211 0 22223333332 2344568
Q ss_pred ceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 107 ~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+++++.+..|++.+.|+++++ ++||||||+++++.+.+++ ||++++++++++ ||||+||
T Consensus 80 ~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~-~pVlvv~ 138 (138)
T 3idf_A 80 INPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAP-IPVLIVK 138 (138)
T ss_dssp CCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCS-SCEEEEC
T ss_pred CCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCC-CCEEEeC
Confidence 899999999999999999999 8999999999999999999 999999999999 9999996
No 11
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=2.5e-24 Score=166.33 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=117.5
Q ss_pred hhhhhcccccccccccCCcccccccccccCCCeEEEEecCCcc-------hHHHHHHHHHHhccCCCEEEEEEEecCCch
Q 030298 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPN-------SKHAFDWALIHLCRLADTIHLVHAVSSVQN 83 (179)
Q Consensus 11 ~~~r~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~-------s~~al~~a~~la~~~~~~l~~v~v~~~~~~ 83 (179)
.=.+.+.||+++.+.. ..+ .+++||||+|+++. +..++++|..+|+..+++++++||.+....
T Consensus 114 ~vl~~~~~PVlvv~~~---------~~~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~ 183 (290)
T 3mt0_A 114 KLLRFAPCPVLMTKTA---------RPW-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPML 183 (290)
T ss_dssp HHHHHCSSCEEEECCC---------SCS-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC----
T ss_pred HHHhcCCCCEEEecCC---------CCC-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccc
Confidence 3457789999988741 122 57999999999998 899999999999999999999999886432
Q ss_pred h------hHHHHHHHHHHHHHHHHhhhcCce-eEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHH
Q 030298 84 Q------IVYDMSQGLMEKLAIEAMDVAMVR-TKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYC 156 (179)
Q Consensus 84 ~------~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~l 156 (179)
. ...+...+...+.++...+..+++ +++.+..|++.+.|+++++++++||||||+++++++.++++||+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~v 263 (290)
T 3mt0_A 184 SSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVV 263 (290)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHH
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHH
Confidence 1 111222222233333344444663 566778899999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCC
Q 030298 157 LHHCKTAPIIVVPGKE 172 (179)
Q Consensus 157 l~~~~~~pVlvv~~~~ 172 (179)
+++++ ||||+||+.+
T Consensus 264 l~~~~-~pVLvv~~~~ 278 (290)
T 3mt0_A 264 LDTLE-SDVLVLKPDD 278 (290)
T ss_dssp HTTCS-SEEEEECCHH
T ss_pred HhcCC-CCEEEECCCC
Confidence 99999 9999998753
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.91 E-value=9e-24 Score=146.75 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=100.7
Q ss_pred CeEEEEecCCcc--hHHHHHHHHHHhccCCCEEEEEEEecCCchhh-----------HHHHHHHHHHHHHHHHhhhcC--
Q 030298 42 RDILIAVDHGPN--SKHAFDWALIHLCRLADTIHLVHAVSSVQNQI-----------VYDMSQGLMEKLAIEAMDVAM-- 106 (179)
Q Consensus 42 ~~Ilv~vd~s~~--s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~-- 106 (179)
++||||+|+++. +..++++|..+|+..+++++++||.+...... ..+...+...+.+++..+..+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 799999999999 99999999999999999999999988633110 011122222222344444433
Q ss_pred -ceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 107 -VRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 107 -~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
..+++.+..|++.+.|++++++.++||||||+++ +++.++++||++++++++++ ||||+||
T Consensus 82 ~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~-~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAE-CSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCS-SEEEEEC
T ss_pred CCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCC-CCEEEeC
Confidence 4578888899999999999999999999999994 88999999999999999999 9999996
No 13
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.91 E-value=1.9e-23 Score=150.17 Aligned_cols=133 Identities=27% Similarity=0.495 Sum_probs=96.9
Q ss_pred CCCeEEEEecCCc---------chHHHHHHHHHHh-cc--CCCEEEEEEEecCCchh----------h-HH--------H
Q 030298 40 RGRDILIAVDHGP---------NSKHAFDWALIHL-CR--LADTIHLVHAVSSVQNQ----------I-VY--------D 88 (179)
Q Consensus 40 ~~~~Ilv~vd~s~---------~s~~al~~a~~la-~~--~~~~l~~v~v~~~~~~~----------~-~~--------~ 88 (179)
.+++||||+|+++ .+..++++|..++ +. .+++++++||.+..... . .. +
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 5699999999999 9999999999987 43 58899999997542110 0 00 1
Q ss_pred HHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 89 MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
..++.++.+.+ .+...++++++++..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++ ||||+|
T Consensus 84 ~~~~~l~~~~~-~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~-~pVlvv 161 (175)
T 2gm3_A 84 KGLHLLEFFVN-KCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE-CPVMTI 161 (175)
T ss_dssp HHHHHHHHHHH-HHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCS-SCEEEE
T ss_pred HHHHHHHHHHH-HHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCC-CCEEEE
Confidence 12233333222 2345678888888899999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCCC
Q 030298 169 PGKEAG 174 (179)
Q Consensus 169 ~~~~~~ 174 (179)
|+....
T Consensus 162 ~~~~~~ 167 (175)
T 2gm3_A 162 KRNADE 167 (175)
T ss_dssp ECCGGG
T ss_pred cCCcCC
Confidence 976443
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.91 E-value=9e-24 Score=146.50 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=99.9
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCch--h----hHHHH----HHHHHHHHHHHHhhhcCcee
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--Q----IVYDM----SQGLMEKLAIEAMDVAMVRT 109 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~----~~~~~----~~~~l~~~~~~~~~~~~~~~ 109 (179)
|+++||||+|+++.+..++++|..+|+..+++++++||.+.... . ...+. ..+..+..++...+..++++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPI 80 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCC
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 47999999999999999999999999999999999999843111 0 00000 01112222333334446665
Q ss_pred -EEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 110 -KARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 110 -~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++.+..|++.+.|++++++.++||||||++ ++.+.+ +||++++++++++ ||||+||+..
T Consensus 81 ~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~-~pVlvv~~~~ 140 (141)
T 1jmv_A 81 SEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIK-IDMLVVPLRD 140 (141)
T ss_dssp CCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCC-SEEEEEECCC
T ss_pred eEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCC-CCEEEeeCCC
Confidence 567778999999999999999999999999 888777 3899999999999 9999999754
No 15
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=5.6e-23 Score=160.07 Aligned_cols=152 Identities=23% Similarity=0.273 Sum_probs=119.3
Q ss_pred hhhhhcccccccccccCCcccccccccccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCch-------
Q 030298 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN------- 83 (179)
Q Consensus 11 ~~~r~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~------- 83 (179)
+=.+.+.||+++.+..... ..+..+++||||+|+++.+..++++|..+|...+++++++||.+....
T Consensus 147 ~vl~~~~~PVlvv~~~~~~------~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~ 220 (309)
T 3cis_A 147 GLLRHAHCPVVIIHDEDSV------MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGID 220 (309)
T ss_dssp HHHHHCSSCEEEECTTCCC------SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCC
T ss_pred HHHHhCCCCEEEEcCCccc------CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCccc
Confidence 3457889999988764321 113356899999999999999999999999999999999999875321
Q ss_pred -hhHHHHHHHHHHHHHHHHhhh-cCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCC
Q 030298 84 -QIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCK 161 (179)
Q Consensus 84 -~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~ 161 (179)
....+..++.+++..+..... .++++++++..|++.+.|+++++ ++||||||+++++++.++++||++++|+++++
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~ 298 (309)
T 3cis_A 221 WPATQSMAEQVLAERLAGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLAR 298 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCC
Confidence 111222333344433333222 47888888889999999999998 79999999999999999999999999999999
Q ss_pred CCcEEEEcCC
Q 030298 162 TAPIIVVPGK 171 (179)
Q Consensus 162 ~~pVlvv~~~ 171 (179)
||||+||+.
T Consensus 299 -~pVlvv~~~ 307 (309)
T 3cis_A 299 -TPVIVARES 307 (309)
T ss_dssp -SCEEEECC-
T ss_pred -CCEEEeCCC
Confidence 999999874
No 16
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=5.8e-23 Score=158.87 Aligned_cols=145 Identities=17% Similarity=0.308 Sum_probs=121.2
Q ss_pred hhhhcccccccccccCCcccccccccccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHH
Q 030298 12 SWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQ 91 (179)
Q Consensus 12 ~~r~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~ 91 (179)
=.+.+.||+++.+..... ...+++|+||+|+++.+..++++|..+++..+++++++||.+... .+
T Consensus 149 vl~~~~~PVlvv~~~~~~--------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------~~ 213 (294)
T 3loq_A 149 VLHDSKVPVYIFKHDMVV--------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------KT 213 (294)
T ss_dssp HHHHCSSCEEEECCCTTT--------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------CH
T ss_pred HHhcCCCCEEEecCcccc--------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------HH
Confidence 357789999988774321 245699999999999999999999999999999999999987654 12
Q ss_pred HHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 92 GLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 92 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+.++... +.+...++++++.+..|++.+.|++++++.++||||||+++++++.++++||++++++++++ ||||+||+.
T Consensus 214 ~~l~~~~-~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pvLvv~~~ 291 (294)
T 3loq_A 214 ADLRVME-EVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSP-VPVFVCKRG 291 (294)
T ss_dssp HHHHHHH-HHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCS-SCEEEECSC
T ss_pred HHHHHHH-HHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCC-CCEEEECCC
Confidence 2333322 23344578888888899999999999999999999999999999999999999999999999 999999986
Q ss_pred CC
Q 030298 172 EA 173 (179)
Q Consensus 172 ~~ 173 (179)
..
T Consensus 292 ~~ 293 (294)
T 3loq_A 292 DD 293 (294)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 17
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.90 E-value=7.1e-23 Score=159.83 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=119.4
Q ss_pred hhhhhcccccccccccCCcccccccccccCCCeEEEEecCCc-------chHHHHHHHHHHhccC--CCEEEEEEEecCC
Q 030298 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGP-------NSKHAFDWALIHLCRL--ADTIHLVHAVSSV 81 (179)
Q Consensus 11 ~~~r~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~-------~s~~al~~a~~la~~~--~~~l~~v~v~~~~ 81 (179)
.=.+.+.||+++.+.... ..+++||||+|+++ .+..++++|..+++.. +++++++||.+..
T Consensus 136 ~vl~~~~~PVlvv~~~~~----------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~ 205 (319)
T 3olq_A 136 QLLRKCPAPVWMVKDKEW----------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVA 205 (319)
T ss_dssp HHHHHCSSCEEEEESSCC----------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCC
T ss_pred HHHhcCCCCEEEecCccc----------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCc
Confidence 345788999998876321 25699999999998 4699999999999999 9999999998764
Q ss_pred chh-----------hHHHHHHHHHHHHHHHHhhhcCc-eeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCcccccc
Q 030298 82 QNQ-----------IVYDMSQGLMEKLAIEAMDVAMV-RTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQ 149 (179)
Q Consensus 82 ~~~-----------~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~ 149 (179)
... ...+...+...+.++...+..++ .++.++..|++.+.|++++++.++||||||+++++++.++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~ 285 (319)
T 3olq_A 206 PINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFL 285 (319)
T ss_dssp SCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHH
T ss_pred chhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccc
Confidence 321 11122223333334444444454 355677889999999999999999999999999999999999
Q ss_pred CchhHHHHhcCCCCcEEEEcCCC
Q 030298 150 GSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 150 gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
||++++|+++++ ||||+||+.+
T Consensus 286 Gsv~~~vl~~~~-~pVLvv~~~~ 307 (319)
T 3olq_A 286 GNTAEQLIDHIK-CDLLAIKPDG 307 (319)
T ss_dssp HHHHHHHHTTCC-SEEEEECCTT
T ss_pred cHHHHHHHhhCC-CCEEEECCCC
Confidence 999999999999 9999999865
No 18
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.88 E-value=1e-21 Score=153.19 Aligned_cols=135 Identities=15% Similarity=0.166 Sum_probs=107.9
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-------hHH--------HHHHHHHHHHHHHH
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------IVY--------DMSQGLMEKLAIEA 101 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-------~~~--------~~~~~~l~~~~~~~ 101 (179)
.|+++++|||++|+++.+..++++|+.+|+..+++|+++|+.+..... ... +..++.+++..+.
T Consensus 3 ~M~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 81 (319)
T 3olq_A 3 AMEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY- 81 (319)
T ss_dssp --CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 367899999999999999999999999999999999999997642210 001 1122333333322
Q ss_pred hhhcCceeEEEEe-cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 102 MDVAMVRTKARIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 102 ~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
+...++++++.+. .|++.+.|++++++.++||||||+++++.+.++++||++++++++++ ||||+||+...
T Consensus 82 ~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~~~ 153 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCP-APVWMVKDKEW 153 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCS-SCEEEEESSCC
T ss_pred HhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCC-CCEEEecCccc
Confidence 3356899999888 89999999999999999999999999999999999999999999999 99999997643
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.87 E-value=1e-21 Score=135.63 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=93.5
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe-cC-C-ch----------hhHH----HHHHHHHHHHHHHH-
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV-SS-V-QN----------QIVY----DMSQGLMEKLAIEA- 101 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~-~~-~-~~----------~~~~----~~~~~~l~~~~~~~- 101 (179)
++++||||+|+++.+..++++|..+|+..+++++++||. +. . .. .... +..++.++.+ +..
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 81 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL 81 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence 679999999999999999999999999999999999998 52 1 00 0111 1223334443 221
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
....+ ++++.+..|++.+.|++++++.++||||||++++ |++++++++++ ||||+||
T Consensus 82 ~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~-~PVlvv~ 138 (138)
T 1q77_A 82 TGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLN-LASLIVK 138 (138)
T ss_dssp HSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSS-SEEEECC
T ss_pred hccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCC-CceEeeC
Confidence 23345 6777788899999999999999999999998865 89999999999 9999986
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.87 E-value=9.6e-22 Score=151.82 Aligned_cols=126 Identities=11% Similarity=0.085 Sum_probs=108.4
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe-c
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV-E 115 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 115 (179)
.|+++++|||++|+++.+..++++|..+|+..+++++++|+.++ +..++.+++..+. +...++++++.+. .
T Consensus 3 ~M~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-------~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 74 (290)
T 3mt0_A 3 AMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-------RDHSAALNDLAQE-LREEGYSVSTNQAWK 74 (290)
T ss_dssp TTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-------SCCHHHHHHHHHH-HHHTTCCEEEEEECS
T ss_pred hhhhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-------HHHHHHHHHHHHH-HhhCCCeEEEEEEeC
Confidence 36789999999999999999999999999999999999999873 1223344443333 3456889988887 4
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
|++.+.|++++++.++||||||+++++.+.++++||++++++++++ ||||+||+.
T Consensus 75 g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~-~PVlvv~~~ 129 (290)
T 3mt0_A 75 DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAP-CPVLMTKTA 129 (290)
T ss_dssp SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCS-SCEEEECCC
T ss_pred CCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCC-CCEEEecCC
Confidence 7899999999999999999999999999999999999999999999 999999954
No 21
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.87 E-value=1.8e-21 Score=148.45 Aligned_cols=128 Identities=21% Similarity=0.267 Sum_probs=103.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh------------H-------H----HHHHHHHHHHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI------------V-------Y----DMSQGLMEKLA 98 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~------------~-------~----~~~~~~l~~~~ 98 (179)
++||||+|+++.+..++++|..+|+..+++++++||.+...... . . +..++.++.+
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 79 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV- 79 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 57999999999999999999999999999999999976422100 0 0 1112223332
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCC-CccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRG-LIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~-~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
...+...|+++++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++ |||++||+...
T Consensus 80 ~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~-~PVlvv~~~~~ 152 (268)
T 3ab8_A 80 RQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASP-VPVLLAPGEPV 152 (268)
T ss_dssp HHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCS-SCEEEECSSCC
T ss_pred HHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCC-CCEEEECCCCC
Confidence 222345678888888899999999999 778999999999998 8999999999999999999 99999997654
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.87 E-value=5.3e-22 Score=153.49 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=109.1
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-------------hHHHHHHHHHHHHHHHHhh
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-------------IVYDMSQGLMEKLAIEAMD 103 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-------------~~~~~~~~~l~~~~~~~~~ 103 (179)
.|+++++||||+|+++.+..++++|..+|+..+++++++||.+..... ...+..++.++++.+. +.
T Consensus 18 ~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 96 (294)
T 3loq_A 18 LYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQK-IE 96 (294)
T ss_dssp CSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 367889999999999999999999999999999999999998754311 1112333444443333 44
Q ss_pred hcCceeEE-EEe-cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 104 VAMVRTKA-RIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 104 ~~~~~~~~-~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..|+++++ .+. .|++.+.| ++++.++||||||+++++.+.++++||++++++++++ |||++||+..
T Consensus 97 ~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~~ 164 (294)
T 3loq_A 97 AAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSK-VPVYIFKHDM 164 (294)
T ss_dssp HTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCS-SCEEEECCCT
T ss_pred HcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCC-CCEEEecCcc
Confidence 56888887 677 89999999 9999999999999999999999999999999999999 9999999875
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.86 E-value=9.4e-21 Score=147.47 Aligned_cols=134 Identities=22% Similarity=0.319 Sum_probs=106.6
Q ss_pred cccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCch--------hhH----HHHHHHHHHHHHHHHhhh
Q 030298 37 ERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--------QIV----YDMSQGLMEKLAIEAMDV 104 (179)
Q Consensus 37 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--------~~~----~~~~~~~l~~~~~~~~~~ 104 (179)
...++++|||++|+++.+..++++|..+|+..+++++++||.+.... ... .+..++.+++..+.....
T Consensus 15 ~~~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (309)
T 3cis_A 15 SGNSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQA 94 (309)
T ss_dssp ---CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999873211 011 122333444433333222
Q ss_pred ----cCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 105 ----AMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 105 ----~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
.++++++.+..|++.+.|+++++ ++||||||+++++.+.++++||++++++++++ |||++||+...
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv~~~~~ 164 (309)
T 3cis_A 95 SLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAH-CPVVIIHDEDS 164 (309)
T ss_dssp CSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCS-SCEEEECTTCC
T ss_pred cccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCC-CCEEEEcCCcc
Confidence 27889988889999999999997 69999999999999999999999999999999 99999997653
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.84 E-value=2.4e-20 Score=142.22 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=110.2
Q ss_pred hhhhhcccccccccccCCcccccccccccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHH
Q 030298 11 YSWREVNLPALSPTAAAEPELERETGERRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMS 90 (179)
Q Consensus 11 ~~~r~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~ 90 (179)
+=.+.+.||+++.+.... .+++||+|+|+++.+..++++|..++...+++++++||.+.. +..
T Consensus 135 ~v~~~a~~PVlvv~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~------~~~ 197 (268)
T 3ab8_A 135 RVLRASPVPVLLAPGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP------ARA 197 (268)
T ss_dssp HHHHHCSSCEEEECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH------HHH
T ss_pred HHHHhCCCCEEEECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH------HHH
Confidence 345778999998876322 458999999999999999999999999999999999998652 122
Q ss_pred HHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 91 QGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
++.++...+. +...|+++++++..|++.+.|++++++. ||||||+ ++.++++||++++++++++ ||||+||
T Consensus 198 ~~~l~~~~~~-l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~-~pvlvv~ 268 (268)
T 3ab8_A 198 EAWALEAEAY-LRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQ-GPVLTAR 268 (268)
T ss_dssp HHHHHHHHHH-HHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCS-SCEEEEC
T ss_pred HHHHHHHHHH-HHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCC-CCEEEeC
Confidence 3344443333 4445788888888899999999999996 9999998 6788899999999999999 9999986
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=96.83 E-value=0.053 Score=36.46 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=84.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCC-CEEEEEEEecCC-----chhhHHHHHHHHHHHHHHHHhhhcCceeE-EEEe
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSV-----QNQIVYDMSQGLMEKLAIEAMDVAMVRTK-ARIV 114 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 114 (179)
.+|||-++-+-.+..+......+....+ ..+.++--.++. .........++.+...+.. +...|..++ -.+.
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~~a~~~e~~~a~~~A~~~l~~sl~a-L~~~G~~a~~G~v~ 80 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEENEVRRRAEEEAAAAKRA-LEAQGIPVEEAKAG 80 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCCCSCC--CHHHHHHHHHHHHHHHH-HHTTTCCCSEEEEE
T ss_pred ceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCCcccccChHHHHHHHHHHHHHHHHH-HHHcCCcccccccC
Confidence 6788888887777776665456665544 666444322211 1112233445555554433 566788887 8888
Q ss_pred cCChHHHHHHHHHHcC--CcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 115 EGDAAKVICKEAERLK--PAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~--~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
.++|..+|.......+ +|-||+.+.. ...++||-...+.+.=+ .. +||+=+
T Consensus 81 d~~Pl~AL~~~v~~~~~~~deiIV~T~P-h~vs~~fh~DwasrAr~-~g-vPVlhl 133 (138)
T 2iel_A 81 DISPLLAIEEELLAHPGAYQGIVLSTLP-PGLSRWLRLDVHTQAER-FG-LPVIHV 133 (138)
T ss_dssp ESSHHHHHHHHHHHSTTSCSEEEEEECC-TTTCHHHHTTHHHHGGG-GS-SCEEEE
T ss_pred CCChHHHHHHHHHhcCCCCceEEEEcCC-chHHHHHhccHHHHHHh-cC-CCEEEE
Confidence 9999999999999999 9999999885 46677777777777766 88 999854
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=93.94 E-value=0.69 Score=35.51 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=61.0
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCE-EEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADT-IHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---- 115 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~-l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (179)
.++|+|++.+...|..++..+..+....+.+ +.++|+...... ......+. .++.++..|++..+.-..
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~--~s~~~~~~----v~~~a~~lgi~~~v~~~~~~~~ 97 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE--SAERDEEF----CKEFAKERNMKIFVGKEDVRAF 97 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST--HHHHHHHH----HHHHHHHHTCCEEEEECCHHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc--ccHHHHHH----HHHHHHHcCCcEEEEEEechhh
Confidence 3789999999999999888887776666777 999999754321 11111222 333344456766544321
Q ss_pred ----C-ChH--------HHHHHHHHHcCCcEEEEeeCC
Q 030298 116 ----G-DAA--------KVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 ----g-~~~--------~~I~~~a~~~~~dliV~G~~~ 140 (179)
| ++. ..+.+++++.+++.|+.|.+.
T Consensus 98 ~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 98 AKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 2 211 245567888999999999764
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.65 E-value=0.77 Score=37.29 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=62.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
++|+|++.+...|..++..+..+....+.++.++||........ ..... ...++.++..|++..+.-..
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~----s~~~~-~~v~~~~~~lgi~~~v~~~~~~~~~~ 93 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRE----SEEEM-EFVKRFCVERRILCETAQIDVPAFQR 93 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHH----HHHHH-HHHHHHHHHTTCEEEEEECCCHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccc----cHHHH-HHHHHHHHHcCCcEEEEEechhhhhh
Confidence 78999999999999999988888777788999999976432111 11111 22344455557766544332
Q ss_pred --C-Ch--------HHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 --G-DA--------AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 --g-~~--------~~~I~~~a~~~~~dliV~G~~~ 140 (179)
| ++ -..+.++|++.+++.|+.|.+.
T Consensus 94 ~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 94 SAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp TTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 1 11 1345567888999999999763
No 28
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=93.55 E-value=0.61 Score=38.05 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=75.8
Q ss_pred eEEEEe--cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhH---HHHHHHHHHHHHHHHhhhcCceeEEEEecCC
Q 030298 43 DILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIV---YDMSQGLMEKLAIEAMDVAMVRTKARIVEGD 117 (179)
Q Consensus 43 ~Ilv~v--d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 117 (179)
.+|+=+ |.--....++..|.+.+...+..+..+++.++...... .....+.+..+. +.+...|+.+ .+..|+
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~Fl~~sL~~L~-~~L~~~G~~L--~v~~g~ 114 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELE-VSLSRKKIPS--FFLRGD 114 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHHHHHHHHHHH-HHHHHTTCCE--EEEESC
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHHHHHHHHHHH-HHHHHcCCcE--EEEeCC
Confidence 344444 44455667888888887666778999999887543221 123344555533 3345556665 456799
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.+.|.+++++.+++.|+.-... ..... ....++.+..+ |++..+..
T Consensus 115 ~~~~l~~l~~~~~~~~V~~~~~~-~~~~~----~~~~~v~~~lg-i~~~~~~~ 161 (482)
T 2xry_A 115 PGEKISRFVKDYNAGTLVTDFSP-LRIKN----QWIEKVISGIS-IPFFEVDA 161 (482)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCC-SHHHH----HHHHHHHHHCC-SCEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeccc-chhHH----HHHHHHHHHcC-CEEEEEeC
Confidence 99999999999999999986542 22111 12344555557 99877754
No 29
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=92.86 E-value=0.86 Score=37.53 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=74.2
Q ss_pred CeEEEEe--cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCch--hh---HHHHHHHHHHHHHHHHhhhcCceeEEEEe
Q 030298 42 RDILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QI---VYDMSQGLMEKLAIEAMDVAMVRTKARIV 114 (179)
Q Consensus 42 ~~Ilv~v--d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 114 (179)
+.+|+=+ |..-....||..|++.|...+..|..++|.++... .. ......+.+..+. +.+...|+. ..+.
T Consensus 38 ~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~~~r~~FL~~sL~dL~-~~L~~lG~~--L~v~ 114 (506)
T 3umv_A 38 GPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSARRRQLGFLLRGLRRLA-ADAAARHLP--FFLF 114 (506)
T ss_dssp SCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCCHHHHHHHHHHHHHHH-HHHHHTTCC--EEEE
T ss_pred CEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCCHHHHHHHHHHHHHHH-HHHHHcCCc--eEEE
Confidence 3455544 55566778899999888777888999999887521 11 1123334445433 334444555 4567
Q ss_pred cCChHHHHHHHHHHcCCcEEEEeeCCCCCcccc-ccCchhHHHHh--cCCCCcEEEEcC
Q 030298 115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSV-LQGSVGEYCLH--HCKTAPIIVVPG 170 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~-~~gs~~~~ll~--~~~~~pVlvv~~ 170 (179)
.|++.+. .+++++.+++.|+.. ..+.... -......+.++ ... |++..+..
T Consensus 115 ~G~p~~v-~~L~~~~~a~~V~~d---~ep~~~~r~rD~~V~~~l~~~~~g-i~~~~~~~ 168 (506)
T 3umv_A 115 TGGPAEI-PALVQRLGASTLVAD---FSPLRPVREALDAVVGDLRREAPG-VAVHQVDA 168 (506)
T ss_dssp SSCTTHH-HHHHHHTTCSEEEEC---CCCCHHHHHHHHHHHHHHHHHCTT-SEEEEECC
T ss_pred ecChHHH-HHHHHhcCCCEEEec---cChhHHHHHHHHHHHHHHhhccCC-eEEEEeCC
Confidence 8999999 999999999999973 2222210 01122233333 456 88876643
No 30
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.73 E-value=0.34 Score=36.83 Aligned_cols=104 Identities=8% Similarity=0.009 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcE
Q 030298 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAA 133 (179)
Q Consensus 54 s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dl 133 (179)
..=++-.|..+....+++++++.|++.. ......+..++.+.+. .-+..+..+.. .+...|+..+ -+|||
T Consensus 178 g~LmlllAylL~~nW~A~I~L~~vV~de---~a~~~a~~~l~~Lv~~----~Ri~a~~~vv~-~~F~~il~~s--~~ADL 247 (294)
T 3g40_A 178 MDLALLIAYKLKSNWKASLSFMTFAPTA---IQAQAAENFLQSLAEL----ARIPNVKMQVL-RENPIKSSKL--PFASL 247 (294)
T ss_dssp THHHHHHHHHHHHHHTCEEEEEEECSSH---HHHHHHHHHHHHHHHH----HTCCSCEEEEE-SSCTTTSSSC--CCCSE
T ss_pred hhHHHHHHHHHhhCcCCeEEEEEecCCH---HHHHHHHHHHHHHHHH----hcCCceEEEec-CchHHHHhhC--cCCCE
Confidence 3334445555555569999999998742 2223334444444333 22333322333 5555555555 45999
Q ss_pred EEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 134 VVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 134 iV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
+++|-.....+ .+..++...+. ...+.++.++..
T Consensus 248 ~flGl~~~~df------~~~~~~~~~~~-ssc~f~~dsg~e 281 (294)
T 3g40_A 248 HIFSLDPNPDL------DLARHLMEKAG-SSCIFALDSGEE 281 (294)
T ss_dssp EEEECCSSCCH------HHHHHHHHHHT-SEEEEEECCSCC
T ss_pred EEEcCCCCCcH------HHHHHHHHhcC-CeEEEEecCchh
Confidence 99998643332 35688999999 888988876654
No 31
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=92.25 E-value=2.2 Score=31.96 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=62.3
Q ss_pred EEecCCcchHHHHHHHHHHhccCCC--EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----C-C-
Q 030298 46 IAVDHGPNSKHAFDWALIHLCRLAD--TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----G-D- 117 (179)
Q Consensus 46 v~vd~s~~s~~al~~a~~la~~~~~--~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----g-~- 117 (179)
++.-.++.+..+++.|.+++...++ +++++.+-+.. .++.++. .+. .|.+--+++.. + +
T Consensus 31 ~~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~--------~~~~lr~----ala-~GaD~vi~v~d~~~~~~~~ 97 (264)
T 1o97_C 31 MMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR--------VDESLRK----CLA-KGADRAVRVWDDAAEGSDA 97 (264)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG--------GHHHHHH----HHH-TTCSEEEEECCGGGTTCCH
T ss_pred CCCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh--------HHHHHHH----HHh-cCCCEEEEEcCcccccCCH
Confidence 3444567889999999999887776 89988875321 1122332 222 24443334422 1 2
Q ss_pred --hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 118 --AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 118 --~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+..|..++++.++|+|++|....+... +.++-.+..... .|.+
T Consensus 98 ~~~a~~La~~i~~~~~dlVl~G~~s~d~~~----~~v~p~lA~~L~-~~~v 143 (264)
T 1o97_C 98 IVVGRILTEVIKKEAPDMVFAGVQSSDQAY----ASTGISVASYLN-WPHA 143 (264)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCCTTTCC----CCHHHHHHHHHT-CCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCch----hhHHHHHHHHhC-CCcc
Confidence 2457777888889999999988654333 334445555555 5543
No 32
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=91.69 E-value=0.86 Score=35.24 Aligned_cols=94 Identities=11% Similarity=0.010 Sum_probs=59.3
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec----
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---- 115 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 115 (179)
.+.+++|++.+...|..++..+..+....+.++.++|+......... .+ ..++..+..|+++.+....
T Consensus 45 ~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et----~~----~v~~~~~~~gi~l~v~~~~~~~~ 116 (325)
T 1zun_A 45 EFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEM----YR----FRDQMVEEMGLDLITHINPDGVA 116 (325)
T ss_dssp HCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHH----HH----HHHHHHHTTTCCEEEECC-----
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHH----HH----HHHHHHHHcCCCEEEEeCchHHh
Confidence 35789999999999999999888776654567889998654332211 12 2333344445655433211
Q ss_pred -CC-h-------------HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 116 -GD-A-------------AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 116 -g~-~-------------~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
|. . ...+.+++++.++|.++.|.+.-
T Consensus 117 ~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 117 QGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp ---------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred cCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 21 1 12466677788999999998754
No 33
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=89.36 E-value=5.3 Score=29.69 Aligned_cols=99 Identities=16% Similarity=0.085 Sum_probs=60.5
Q ss_pred cCCcchHHHHHHHHHHhccCCC--EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe------cC-C--
Q 030298 49 DHGPNSKHAFDWALIHLCRLAD--TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV------EG-D-- 117 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~--~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~g-~-- 117 (179)
-..+.+..+++.|.++... |+ +++++.+-+.. .++.++.. +. .|.+--+++. .+ +
T Consensus 37 ~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~--------a~~~lr~a----la-~GaD~vi~v~~d~~~~~~~~~~ 102 (255)
T 1efv_B 37 SMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ--------CQETIRTA----LA-MGADRGIHVEVPPAEAERLGPL 102 (255)
T ss_dssp EECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT--------HHHHHHHH----HH-HTCSEEEEEECCHHHHTTCCHH
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh--------HHHHHHHH----Hh-cCCCEEEEEecChhhcccCCHH
Confidence 3457788999999999876 66 89998886532 12233322 12 1444334443 12 3
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+..|..++++.++|+|++|....+... +.++-.+..... .|.+
T Consensus 103 ~~A~~La~~i~~~~~dlVl~G~~s~d~d~----~~v~p~lA~~L~-~~~v 147 (255)
T 1efv_B 103 QVARVLAKLAEKEKVDLVLLGKQAIDDDC----NQTGQMTAGFLD-WPQG 147 (255)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHT-CCEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccCCch----hhHHHHHHHHhC-CCcc
Confidence 2457777888889999999987654333 334555555555 5543
No 34
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=88.98 E-value=5.6 Score=29.48 Aligned_cols=99 Identities=11% Similarity=0.051 Sum_probs=59.7
Q ss_pred cCCcchHHHHHHHHHHhccCCC--EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEe------cC-C--
Q 030298 49 DHGPNSKHAFDWALIHLCRLAD--TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIV------EG-D-- 117 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~--~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~g-~-- 117 (179)
-.++.+..+++.|.++... ++ +++++.+-+.. .++.++.. +. .|.+--+++. .+ +
T Consensus 34 ~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~--------a~~~lr~a----la-~GaD~vi~v~~d~~~~~~~~~~ 99 (252)
T 1efp_B 34 SMNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ--------AAETLRTA----LA-MGADRAILVVAADDVQQDIEPL 99 (252)
T ss_dssp EECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG--------GHHHHHHH----HH-HTCSEEEEEECCSSTTCCCCHH
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh--------HHHHHHHH----Hh-cCCCEEEEEecChhhcccCCHH
Confidence 3467788999999999876 66 89988876421 12223322 11 1444333443 12 2
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
.+..|..++++.++|+|++|....+... +.++-.+..... .|.+
T Consensus 100 ~~a~~La~~i~~~~~dlVl~G~~s~d~~~----~~v~p~lA~~L~-~~~v 144 (252)
T 1efp_B 100 AVAKILAAVARAEGTELIIAGKQAIDNDM----NATGQMLAAILG-WAQA 144 (252)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHT-CEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCch----hhHHHHHHHHhC-CCcc
Confidence 3557777888888999999987654333 334445555445 5543
No 35
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=88.98 E-value=3.1 Score=30.09 Aligned_cols=86 Identities=8% Similarity=0.062 Sum_probs=58.0
Q ss_pred CCeEEEEecC-----CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec
Q 030298 41 GRDILIAVDH-----GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE 115 (179)
Q Consensus 41 ~~~Ilv~vd~-----s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 115 (179)
+++|+|-++. .+.+..++..|.+|+...|.+++++.+-+.. .. . .+++.. .|.+--+++..
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~-~~--------~----~~~~~~-~Gad~v~~v~~ 68 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGL-KE--------I----EKQILP-YGVDKLHVFDA 68 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCC-TT--------T----HHHHGG-GTCSEEEEEEC
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCH-HH--------H----HHHHHh-cCCCEEEEecC
Confidence 3678887764 3668999999999999889999998875431 10 1 122222 24443333322
Q ss_pred ----C-C---hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 ----G-D---AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 ----g-~---~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
+ + ....|.+.+++.++|+|++|...
T Consensus 69 ~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 69 EGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp GGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1 2 36678888999999999999764
No 36
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=87.19 E-value=4.3 Score=33.61 Aligned_cols=122 Identities=7% Similarity=-0.017 Sum_probs=76.6
Q ss_pred eEEEEe--cCCcchHHHHHHHHHHhcc--CCCEEEEEEEecCCchhh------HHHHHHHHHHHHHHHHhhhcCceeEEE
Q 030298 43 DILIAV--DHGPNSKHAFDWALIHLCR--LADTIHLVHAVSSVQNQI------VYDMSQGLMEKLAIEAMDVAMVRTKAR 112 (179)
Q Consensus 43 ~Ilv~v--d~s~~s~~al~~a~~la~~--~~~~l~~v~v~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~ 112 (179)
.+|+=+ |.--....++..|++.+.. .+..+..+++.++..... ......+.+..+. +.+...|..+ .
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~-~~L~~~G~~L--~ 106 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLD-NQLRKLNSRL--F 106 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHH-HHHHHTTCCC--E
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHH-HHHHHCCCeE--E
Confidence 335444 4555667788888877754 456799999988654321 1223344555533 3345556665 4
Q ss_pred EecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 113 IVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 113 ~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..|++.+.|.+++++.+++.|+.-.. ..+.... .-....+.+...+ |++..+..
T Consensus 107 v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~~-rd~~v~~~~~~~g-i~~~~~~~ 161 (543)
T 2wq7_A 107 VVRGKPAEVFPRIFKSWRVEMLTFETD-IEPYSVT-RDAAVQKLAKAEG-VRVETHCS 161 (543)
T ss_dssp EEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHHH-HHHHHHHHHHHHT-CEEEEECC
T ss_pred EEeCCHHHHHHHHHHHcCCCEEEEecC-cCHHHHH-HHHHHHHHHHHcC-CEEEEecC
Confidence 567999999999999999999988744 2332221 1233455666667 88877654
No 37
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=86.29 E-value=6.6 Score=29.09 Aligned_cols=40 Identities=8% Similarity=-0.116 Sum_probs=31.9
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
+.+|+|++.+...|..++..+.++... +.++.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCC
Confidence 468999999999999988888777654 4578889986544
No 38
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=86.28 E-value=6.5 Score=27.60 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=40.3
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHH---HHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEA---ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|++++..+..- ..-+.+.+|+ ++.+++.||.|+.+...+.. -+...+. .||+-||...
T Consensus 45 L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG--------vvAa~T~-~PVIGVPv~s 110 (181)
T 4b4k_A 45 LDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTN-LPVIGVPVQS 110 (181)
T ss_dssp HHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHTTCC-SCEEEEECCC
T ss_pred HHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh--------hHHhcCC-CCEEEEecCC
Confidence 445578888777664 3444455554 45678899999876544332 2455677 9999998754
No 39
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=85.96 E-value=6.3 Score=28.51 Aligned_cols=88 Identities=8% Similarity=-0.101 Sum_probs=48.3
Q ss_pred ccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCC
Q 030298 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD 117 (179)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 117 (179)
|...++|.|-+.++.....++-.+.. ....++++.+ |......... . +..+..|+++...-...-
T Consensus 5 ~~~~~ri~vl~SG~gsnl~all~~~~-~~~~~~~I~~--Vis~~~~a~~-----------l-~~A~~~gIp~~~~~~~~~ 69 (215)
T 3kcq_A 5 MKKELRVGVLISGRGSNLEALAKAFS-TEESSVVISC--VISNNAEARG-----------L-LIAQSYGIPTFVVKRKPL 69 (215)
T ss_dssp --CCEEEEEEESSCCHHHHHHHHHTC-CC-CSEEEEE--EEESCTTCTH-----------H-HHHHHTTCCEEECCBTTB
T ss_pred CCCCCEEEEEEECCcHHHHHHHHHHH-cCCCCcEEEE--EEeCCcchHH-----------H-HHHHHcCCCEEEeCcccC
Confidence 44457899988888766665554432 1122334444 4443211110 1 223445677653211121
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
..+++++..++.++|++|+....
T Consensus 70 ~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 70 DIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEESSCC
T ss_pred ChHHHHHHHHHhCCCEEEEeCCc
Confidence 24788999999999999998764
No 40
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=85.48 E-value=4.9 Score=28.04 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=36.7
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHH---HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..|++++..+..- ..-+.+.+| ++..+++.||.++.+...+. --+...+. +||+-||-.
T Consensus 35 l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------gvvA~~t~-~PVIgVPv~ 99 (173)
T 4grd_A 35 LQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------GMLAAKTT-VPVLGVPVA 99 (173)
T ss_dssp HHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------HHHHHHCC-SCEEEEEEC
T ss_pred HHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------hhheecCC-CCEEEEEcC
Confidence 344567777766553 334444444 44467888888877644433 22445677 888888743
No 41
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=83.74 E-value=6.8 Score=26.88 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=43.7
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++..|++++..+..- ...+.+.+++++...+.||.++.....+. --+...++ +||+-||.
T Consensus 22 l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp--------gvva~~t~-~PVIgVP~ 82 (157)
T 2ywx_A 22 LKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP--------GVVASLTT-KPVIAVPV 82 (157)
T ss_dssp HHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH--------HHHHTTCS-SCEEEEEE
T ss_pred HHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH--------HHHHhccC-CCEEEecC
Confidence 445678888877664 56778888988766699999988654433 33556678 99999986
No 42
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=83.57 E-value=4.3 Score=25.44 Aligned_cols=51 Identities=10% Similarity=-0.051 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC-----CCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR-----GLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~-----~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..+.|.+++++++++.||+|-... +... ...-..+++|-.. + +||..+-..
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~-~~~~~f~~~L~~~-~-lpV~~~DER 94 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQA-GKVLPLVEALRAR-G-VEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCS-STTHHHHHHHHHT-T-CEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHH-HHHHHHHHHHhcC-C-CCEEEECCC
Confidence 467899999999999999995421 1111 1123456777666 7 999988554
No 43
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=83.40 E-value=2.1 Score=35.54 Aligned_cols=114 Identities=11% Similarity=0.018 Sum_probs=69.1
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------hHHHHHHHHHHHHHHHHhhhc---CceeEEEEecCChH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------IVYDMSQGLMEKLAIEAMDVA---MVRTKARIVEGDAA 119 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~ 119 (179)
|..-....||..|++.+. .+..|..|+|.++.... .......+.+..+. +.+... |... .+..|++.
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~-~~L~~~~~~G~~L--~v~~G~~~ 88 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDID-DQLQAATDGRGRL--LVFEGEPA 88 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHH-HHGGGSCSSSSCC--EEEESCHH
T ss_pred CcchhhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHH-HHHHHhhcCCCeE--EEEeCCHH
Confidence 444455567777766554 45588899998864322 11223344555533 334444 5554 56789999
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+.|.+++++.+++.|+.-.. ..+...- ......+.+...+ |++..+.
T Consensus 89 ~vl~~L~~~~~a~~V~~n~~-~~~~~~~-RD~~v~~~l~~~g-i~~~~~~ 135 (538)
T 3tvs_A 89 YIFRRLHEQVRLHRICIEQD-CEPIWNE-RDESIRSLCRELN-IDFVEKV 135 (538)
T ss_dssp HHHHHHHHHHCEEEECEECC-CCGGGHH-HHHHHHHHHHHSS-CCCCEEC
T ss_pred HHHHHHHHHcCCCEEEEccC-CCHHHHH-HHHHHHHHHHhCC-ceEEEec
Confidence 99999999999999987533 3333221 1233455666667 7776554
No 44
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=83.01 E-value=8.2 Score=31.41 Aligned_cols=113 Identities=14% Similarity=0.000 Sum_probs=68.4
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-----------hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCC
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-----------IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD 117 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 117 (179)
|.--....++..|++ .+..+..|++.++.... .......+.+..+. +.+...|..+ .+..|+
T Consensus 15 DLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~-~~L~~~G~~L--~v~~g~ 87 (489)
T 1np7_A 15 DLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLA-ESLQKVGNKL--LVTTGL 87 (489)
T ss_dssp CCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHH-HHHHHTTCCE--EEEESC
T ss_pred CCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHH-HHHHHCCCcE--EEEECC
Confidence 444555667777754 34578888888764221 11123344555543 3345556665 456799
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+.+.|.+++++.+++.|+.-.. ..+..... -....+.+...+ |++..+...
T Consensus 88 ~~~~l~~l~~~~~~~~V~~~~~-~~~~~~~r-d~~v~~~l~~~g-i~~~~~~~~ 138 (489)
T 1np7_A 88 PEQVIPQIAKQINAKTIYYHRE-VTQEELDV-ERNLVKQLTILG-IEAKGYWGS 138 (489)
T ss_dssp HHHHHHHHHHHTTEEEEEEECC-CSHHHHHH-HHHHHHHHHHHT-CEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHhcC-CeEEEecCC
Confidence 9999999999999998888754 33332222 223344555567 888776543
No 45
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=82.99 E-value=11 Score=28.61 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=56.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhcc------------------CCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhh
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCR------------------LADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMD 103 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~------------------~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (179)
.+|+|++.+...|..++..+...... .+.++.++|+.......... +. .++..+
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~----~f----v~~~~~ 125 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLE----NF----VLETSE 125 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHH----HH----HHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHH----HH----HHHHHH
Confidence 47999999999998888877665321 13568889886543322222 22 223333
Q ss_pred hcCceeEEEEec----CChHHHHHHHHHH-cCCcEEEEeeCCCCC
Q 030298 104 VAMVRTKARIVE----GDAAKVICKEAER-LKPAAVVIGSRGRGL 143 (179)
Q Consensus 104 ~~~~~~~~~~~~----g~~~~~I~~~a~~-~~~dliV~G~~~~~~ 143 (179)
..++++.+.... ....+.+.++++. -..+.+++|.+....
T Consensus 126 ~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds 170 (306)
T 2wsi_A 126 RYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDP 170 (306)
T ss_dssp HTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSS
T ss_pred HcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEecccc
Confidence 335554322111 2345666677766 368899999886443
No 46
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=82.43 E-value=9 Score=26.60 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=37.7
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHH---HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~---a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|++++..+..- ...+.+.++ +++.+++.||.++.....+. --+...++ +||+-||-..
T Consensus 29 l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~~ 94 (169)
T 3trh_A 29 LKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA--------GTIAAHTL-KPVIGVPMAG 94 (169)
T ss_dssp HHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH--------HHHHHTCS-SCEEEEECCC
T ss_pred HHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhcCC-CCEEEeecCC
Confidence 344567777776553 333444444 45567888888877543333 33556677 8888887653
No 47
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=81.77 E-value=19 Score=29.13 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
..++|+|++.+...|..++.++.+. |..+..+|+....
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~Gq 46 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQ 46 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECCC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcCC
Confidence 3479999999999999888877552 7799999986543
No 48
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=81.60 E-value=18 Score=28.70 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=55.2
Q ss_pred ccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhc-CceeEEEEecC
Q 030298 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVA-MVRTKARIVEG 116 (179)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~g 116 (179)
....+++++++.+...|..++..+.+ .|.++.++|+....... +...+....+.+...+.. +++..+.-...
T Consensus 184 i~~~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~~~~~~---~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~ 256 (413)
T 2c5s_A 184 VGVGGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHSPPFTS---ERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TTTTEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEECTTTSC---HHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred cCCCCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeCCCCCC---HHHHHHHHHHHHHHHHhCCCCeEEEEECcH
Confidence 33457999999999888887776654 37789999986431111 111222333333332222 34443322110
Q ss_pred ---------Ch------H-----HHHHHHHHHcCCcEEEEeeCCC
Q 030298 117 ---------DA------A-----KVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 117 ---------~~------~-----~~I~~~a~~~~~dliV~G~~~~ 141 (179)
.. . ..+.++|++.+++.|+.|.+..
T Consensus 257 ~~~~i~~~~~~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~d 301 (413)
T 2c5s_A 257 VQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLG 301 (413)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSS
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccch
Confidence 00 0 1224668899999999998643
No 49
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=81.45 E-value=12 Score=26.54 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=54.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh---
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA--- 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~--- 118 (179)
.+|+|++.+...|..++..+.++. .++.++|+........ ..+ ..++..+..|+++.+....-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~~e----~~~----~v~~~~~~~gi~~~v~~~~~~~~~~ 112 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLFPE----TYR----FIDELTDKLKLNLKVYRATESAAWQ 112 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBCHH----HHH----HHHHHHHHTTCEEEEEECSSCHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCCHH----HHH----HHHHHHHHhCCcEEEEeCCCCHHHH
Confidence 589999999999998888776663 4688899866432211 112 2334444556766544322111
Q ss_pred ------------H-----------HHHHHHHHHcCCcEEEEeeCCC
Q 030298 119 ------------A-----------KVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 119 ------------~-----------~~I~~~a~~~~~dliV~G~~~~ 141 (179)
. ..+.+++++.+++.++.|.+..
T Consensus 113 ~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~d 158 (215)
T 1sur_A 113 EARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRRE 158 (215)
T ss_dssp HHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTT
T ss_pred HHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehh
Confidence 0 1234566777888999997653
No 50
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=81.27 E-value=9.4 Score=26.65 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=36.7
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHH---HHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEA---ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..|++++..+..- ...+.+.+++ ++.+++.||.++.....+. --+...+. +||+-||-.
T Consensus 35 L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~ 99 (174)
T 3kuu_A 35 LTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP--------GMLAAKTL-VPVLGVPVQ 99 (174)
T ss_dssp HHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH--------HHHHHTCS-SCEEEEEEC
T ss_pred HHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhccC-CCEEEeeCC
Confidence 344567777766553 3444555554 3466788888877543333 33555677 888888754
No 51
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=80.61 E-value=10 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=40.4
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHH---HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|++++..+..- ...+.+.++++ +.+++.||.++.....+. --+...++ +||+-||...
T Consensus 34 L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~~ 99 (170)
T 1xmp_A 34 LDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTN-LPVIGVPVQS 99 (170)
T ss_dssp HHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHTTCC-SCEEEEEECC
T ss_pred HHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccC-CCEEEeeCCC
Confidence 344578888777653 44555566654 456888888887644433 33556677 9999988653
No 52
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=80.59 E-value=11 Score=30.25 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=33.8
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhcc-CCCEEEEEEEecC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCR-LADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~-~~~~l~~v~v~~~ 80 (179)
++|+|++.+...|..++..+..+... .+.++.++||...
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhg 53 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHG 53 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCS
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECC
Confidence 78999999999999999888887766 6789999999654
No 53
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=79.89 E-value=12 Score=25.86 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=40.5
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHH---HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|+.++..+..- ...+.+.++++ +.+++.||.++.....+. --+...+. +||+-||...
T Consensus 28 l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~~ 93 (166)
T 3oow_A 28 LDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP--------GMVAAKTT-LPVLGVPVKS 93 (166)
T ss_dssp HHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHHTCS-SCEEEEECCC
T ss_pred HHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH--------HHHHhccC-CCEEEeecCc
Confidence 345567788777654 44555666654 456899998887644433 33556778 9999998643
No 54
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=79.42 E-value=12 Score=29.34 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=54.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-hHHHHHHHHHHHHHHHHhhhcCceeEEEEec-----
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-IVYDMSQGLMEKLAIEAMDVAMVRTKARIVE----- 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----- 115 (179)
++|+|++.+...|..++..+.+ .+-++..+|+....... .......+..+ .+++.++..|++..+.-..
T Consensus 10 ~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~~~c~~~~d~~-~a~~va~~lGIp~~vv~~~~~~~~ 84 (376)
T 2hma_A 10 TRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTDENGVCTATEDYK-DVVAVADQIGIPYYSVNFEKEYWD 84 (376)
T ss_dssp SEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC----CHHHHHHH-HHHHHHHHHTCCEEEEECHHHHHH
T ss_pred CeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCcccccccCCCHHHHH-HHHHHHHHhCCcEEEEeChHHHHH
Confidence 6899999999888877665543 36789999986532210 00000011111 1333344446665433321
Q ss_pred ------------C---C---------hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 116 ------------G---D---------AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 ------------g---~---------~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
| + -...+.++|++.++|.|+.|.+.
T Consensus 85 ~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 85 RVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 1 0 02456788889999999999754
No 55
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=79.08 E-value=13 Score=30.26 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=67.4
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCch------hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN------QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
|.--....++..|.+.+ ..+..+++.++... ........+.+..+. +.+...|..+ .+..|++.+.|
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~-~~L~~~G~~L--~v~~g~~~~~l 84 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQ-QRYQQAGSRL--LLLQGDPQHLI 84 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHH-HHHHHHTSCE--EEEESCHHHHH
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHH-HHHHHCCCeE--EEEeCCHHHHH
Confidence 33344556677776532 36888888875321 111223344555543 3345556665 45679999999
Q ss_pred HHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 123 CKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+++++.+++.|+.-.. ..+..... -....+.+...+ |++..+..
T Consensus 85 ~~l~~~~~~~~v~~~~~-~~p~~~~r-d~~v~~~l~~~g-i~~~~~~~ 129 (484)
T 1owl_A 85 PQLAQQLQAEAVYWNQD-IEPYGRDR-DGQVAAALKTAG-IRAVQLWD 129 (484)
T ss_dssp HHHHHHTTCSEEEEECC-CSHHHHHH-HHHHHHHHHHTT-CEEEEECC
T ss_pred HHHHHHcCCCEEEEecc-CChhHHHH-HHHHHHHHHHcC-cEEEEecC
Confidence 99999999999988644 33332222 233345556667 88877654
No 56
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=79.04 E-value=11 Score=25.81 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=37.2
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHH---Hc-CCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAE---RL-KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~-~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..|++++..+..- ...+.+.++++ +. +++.||.++.....+. --+...++ +||+-||..
T Consensus 25 l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~ 90 (159)
T 3rg8_A 25 LKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS--------GFVDGFVK-GATIACPPP 90 (159)
T ss_dssp HHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH--------HHHHHHSS-SCEEECCCC
T ss_pred HHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH--------HHHHhccC-CCEEEeeCC
Confidence 344567777776553 34455555543 32 5888888877543333 33455677 888888754
No 57
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=79.04 E-value=18 Score=27.23 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=66.7
Q ss_pred cccCCCeEEEEe----c-CCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCcee
Q 030298 37 ERRRGRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRT 109 (179)
Q Consensus 37 ~~~~~~~Ilv~v----d-~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 109 (179)
+|.+++-|..++ + +..-...+++.-+++....|. +.+.+.....+.. ..++..+.++...+... ..+.+
T Consensus 4 ~~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~--grvpv 79 (297)
T 3flu_A 4 PFTMLQGSLVALITPMNQDGSIHYEQLRDLIDWHIENGT--DGIVAVGTTGESATLSVEEHTAVIEAVVKHVA--KRVPV 79 (297)
T ss_dssp CCCCCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTC--CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCE
T ss_pred cccccCeeEEeeeccCCCCCCcCHHHHHHHHHHHHHcCC--CEEEeCccccCcccCCHHHHHHHHHHHHHHhC--CCCcE
Confidence 345566666654 3 223445566655555544443 3344444433222 23333444444333322 12444
Q ss_pred EEEEecCChHH--HHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 110 KARIVEGDAAK--VICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 110 ~~~~~~g~~~~--~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-.-+-..+..+ .+.+.|++.++|-+++.........+ -+. .--+.|...++ .|+++...
T Consensus 80 iaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~-lPiilYn~ 141 (297)
T 3flu_A 80 IAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIY-QHFKTIAEATS-IPMIIYNV 141 (297)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCC-SCEEEEEC
T ss_pred EEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEEC
Confidence 33222224444 44567889999999888765443322 222 22366788888 99998753
No 58
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=78.38 E-value=13 Score=25.69 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=39.4
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHH---HHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEA---ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a---~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|++++..+..- ...+.+.+++ ++.+++.||.++.....+. --+...++ +||+-||-..
T Consensus 26 l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~~ 91 (163)
T 3ors_A 26 LDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP--------GMVASLTT-LPVIGVPIET 91 (163)
T ss_dssp HHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCS-SCEEEEEECC
T ss_pred HHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccC-CCEEEeeCCC
Confidence 345577788777653 3445555554 4567888888887644433 33555678 9999887543
No 59
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=78.25 E-value=21 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.089 Sum_probs=54.2
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCce-eEEEEe-----
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVR-TKARIV----- 114 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~----- 114 (179)
.++|++++.+...|..++.++.+. +.++..+|+....... .+. .++.++..|++ ..+.-.
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g~~~e------~e~----a~~~A~~lGi~~~~vvd~~~ef~ 70 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIGQKED------FEE----ARKKALKLGAKKVFIEDVSREFV 70 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESSCCCC------HHH----HHHHHHHHTCSEEEEEECHHHHH
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECCcHHH------HHH----HHHHHHHhCCCEEEEEeChHHHH
Confidence 368999999999888888777553 6688899986653211 111 12222223443 222110
Q ss_pred -------------------cCCh------HHHHHHHHHHcCCcEEEEeeCCC
Q 030298 115 -------------------EGDA------AKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 115 -------------------~g~~------~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
-|.. ...+.++|++.+++.|+.|.++.
T Consensus 71 ~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 71 EEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp HHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCc
Confidence 0111 45777889999999999998863
No 60
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=77.98 E-value=8.1 Score=31.08 Aligned_cols=108 Identities=12% Similarity=0.074 Sum_probs=65.0
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCch-------hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHH
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN-------QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~ 123 (179)
.-....|+..|++ .+.++..++|.++... ........+.+..+. +.+...|... .+..|++.+.|.
T Consensus 12 Rl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~-~~L~~~G~~L--~v~~g~~~~~l~ 84 (440)
T 2e0i_A 12 RLEDNTGLNYALS----ECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELD-DELRKKGSRL--NVFFGEAEKVVS 84 (440)
T ss_dssp CSSSCHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHH-HHHHTTTCCC--EEEESCHHHHHH
T ss_pred ccchhHHHHHHHh----cCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHH-HHHHHcCCeE--EEEECCHHHHHH
Confidence 3344466666665 3568999999875321 111233345555543 3345556665 456799999999
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++++ +++.|+.-.. ..+..... .....+.+...+ |++..+..
T Consensus 85 ~l~~--~~~~v~~~~~-~~~~~~~r-d~~v~~~l~~~g-i~~~~~~~ 126 (440)
T 2e0i_A 85 RFFN--KVDAIYVNED-YTPFSISR-DEKIRKVCEENG-IEFKAYED 126 (440)
T ss_dssp HHCT--TCSEEEEECC-CSHHHHHH-HHHHHHHHHTTT-CEEEEECC
T ss_pred HHHc--CCCEEEEecc-cChHHHHH-HHHHHHHHHHcC-ceEEEecC
Confidence 9999 8999888644 33332222 233445566667 88877754
No 61
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=77.94 E-value=12 Score=26.11 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred hhhcCceeEEEEecC-ChHH---HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEG-DAAK---VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~---~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..|++++..+..- ...+ .+++.+++.+++.||.++.....+. --+...+. +||+-||-.
T Consensus 30 L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~ 94 (174)
T 3lp6_A 30 LAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP--------GMVAAATP-LPVIGVPVP 94 (174)
T ss_dssp HHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH--------HHHHHHCS-SCEEEEEEC
T ss_pred HHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH--------HHHHhccC-CCEEEeeCC
Confidence 344567777766553 2333 3444455677888888877543333 33455677 888888754
No 62
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=77.92 E-value=23 Score=27.79 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=55.8
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh-hHHHHHHHHHHHHHHHHhhhcCceeEEEEec---
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ-IVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--- 115 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--- 115 (179)
..++|+|++.+...|..++..+.+ .+-++..+|+....... ...-...+..+ ..++.++..|++..+.-..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~~~~~s~~d~~-~a~~va~~LGIp~~vvd~~~~f 90 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ----QGYQVEGLFMKNWEEDDGEEYCTAAADLA-DAQAVCDKLGIELHTVNFAAEY 90 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT----TCCEEEEEEEECCCCCSHHHHHHHHHHHH-HHHHHHHHHTCCEEEEECHHHH
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH----cCCeEEEEEEEcCccccccCCCCCHHHHH-HHHHHHHHcCCcEEEEeCcHHH
Confidence 447899999999888876665543 36789999986432210 00000111122 2334445556665543321
Q ss_pred --------------C---Ch---------HHHHHHHHHH-cCCcEEEEeeCCC
Q 030298 116 --------------G---DA---------AKVICKEAER-LKPAAVVIGSRGR 141 (179)
Q Consensus 116 --------------g---~~---------~~~I~~~a~~-~~~dliV~G~~~~ 141 (179)
| ++ ...+.++|++ .++|.|+.|.+..
T Consensus 91 ~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~ 143 (380)
T 2der_A 91 WDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVR 143 (380)
T ss_dssp HHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCE
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccc
Confidence 1 11 2355677887 9999999997543
No 63
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=77.61 E-value=13 Score=26.11 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=39.7
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHH---HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|+++++.+..- ...+.+.++++ ..+++.||.++.....+. --+...+. +||+-||-..
T Consensus 44 L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~~ 109 (182)
T 1u11_A 44 LTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP--------GMCAAWTR-LPVLGVPVES 109 (182)
T ss_dssp HHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCS-SCEEEEEECC
T ss_pred HHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH--------HHHHhccC-CCEEEeeCCC
Confidence 344567777777653 44555566654 456888888887644433 33556678 9999888653
No 64
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=77.57 E-value=12 Score=30.80 Aligned_cols=91 Identities=13% Similarity=0.038 Sum_probs=58.2
Q ss_pred CeEEEEe--cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh------------hHHHHHHHHHHHHHHHHhhhcCc
Q 030298 42 RDILIAV--DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------------IVYDMSQGLMEKLAIEAMDVAMV 107 (179)
Q Consensus 42 ~~Ilv~v--d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~ 107 (179)
+.+|+=+ |.--....++..|+.. +..+..+++.++.... .......+.+..+. +.+...|.
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~-~~L~~~G~ 114 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLR-KNLMKRGL 114 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHH-HHHHHTTC
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHcCC
Confidence 4455544 4445566777777553 3478889988764221 11223345555543 33455566
Q ss_pred eeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 108 RTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 108 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
.+. +..|++.+.|.+++++.+++.|+.-..
T Consensus 115 ~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~ 144 (525)
T 2j4d_A 115 NLL--IRSGKPEEILPSLAKDFGARTVFAHKE 144 (525)
T ss_dssp CCE--EEESCHHHHHHHHHHHHTCSEEEEECC
T ss_pred eEE--EEeCCHHHHHHHHHHHcCCCEEEEecc
Confidence 654 567999999999999999999988744
No 65
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=77.54 E-value=12 Score=26.25 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=40.3
Q ss_pred hhhcCceeEEEEecC-ChHHHHHHHHH---HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIVEG-DAAKVICKEAE---RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~~I~~~a~---~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
++..|++++..+..- ...+.+.++++ ..+++.||.++.....+. --+...++ +||+-||...
T Consensus 36 L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~-~PVIgVP~~~ 101 (183)
T 1o4v_A 36 LEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------GMVASITH-LPVIGVPVKT 101 (183)
T ss_dssp HHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCS-SCEEEEEECC
T ss_pred HHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------HHHHhccC-CCEEEeeCCC
Confidence 345578888777653 34455555544 567898888887654433 33556678 9999998654
No 66
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=77.03 E-value=11 Score=29.93 Aligned_cols=107 Identities=15% Similarity=0.022 Sum_probs=62.7
Q ss_pred CCcchHHHHHHHHHHhccCCCEEEEEEEecCCch---hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHH
Q 030298 50 HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN---QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEA 126 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a 126 (179)
.--....++..|.+. + ++..+++.++... ........+.+..+. +.++..|+.+ .+..|++.+.|.+++
T Consensus 12 lRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~~~~~r~~fl~~sL~~l~-~~L~~~g~~l--~~~~g~~~~~l~~l~ 83 (420)
T 2j07_A 12 LRLHDHPALLEALAR----G-PVVGLVVLDPNNLKTTPRRRAWFLENVRALR-EAYRARGGAL--WVLEGLPWEKVPEAA 83 (420)
T ss_dssp CCSTTCHHHHHHHTT----S-CEEEEEEECHHHHSSCHHHHHHHHHHHHHHH-HHHHHTTCCE--EEEESCHHHHHHHHH
T ss_pred CCccccHHHHHHHhC----C-CEEEEEEECCccccCCHHHHHHHHHHHHHHH-HHHHHCCCeE--EEEeCCHHHHHHHHH
Confidence 334445666666542 2 7888888775321 111223344455533 3345556665 456799999999999
Q ss_pred HHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 127 ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 127 ~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++.+++.|+.-.. ..+..... -+.|.+..+ |++..+..
T Consensus 84 ~~~~~~~v~~~~~-~~~~~~~r----d~~v~~~l~-i~~~~~~~ 121 (420)
T 2j07_A 84 RRLKAKAVYALTS-HTPYGRYR----DGRVREALP-VPLHLLPA 121 (420)
T ss_dssp HHTTCSEEEEECC-CSHHHHHH----HHHHHHHCS-SCEEEECC
T ss_pred HHcCCCEEEEecc-cChhHHHH----HHHHHHHcC-CeEEEeCC
Confidence 9999999988644 33322221 233333336 88877654
No 67
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=75.14 E-value=24 Score=26.62 Aligned_cols=128 Identities=11% Similarity=-0.023 Sum_probs=65.0
Q ss_pred cccCCCeEEEE----ecC-CcchHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCcee
Q 030298 37 ERRRGRDILIA----VDH-GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRT 109 (179)
Q Consensus 37 ~~~~~~~Ilv~----vd~-s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ 109 (179)
.|-.++-|++| ++. ..-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+
T Consensus 9 ~~~~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv--~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~-~-grvpV 84 (301)
T 1xky_A 9 HMIDFGTIATAMVTPFDINGNIDFAKTTKLVNYLIDNGT--TAIVVGGTTGESPTLTSEEKVALYRHVVSVV-D-KRVPV 84 (301)
T ss_dssp -CCCCCSEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTC--CEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TSSCE
T ss_pred cccCCCceEEeeECcCCCCCCcCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCceE
Confidence 44555666654 332 23455566555555544443 334444443322 22334444444433332 2 12443
Q ss_pred EEEEecCChHHH--HHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 110 KARIVEGDAAKV--ICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 110 ~~~~~~g~~~~~--I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-.-+-..+..++ +.+.|++.++|-+++-........+ -++ .--+.|...++ .||++...
T Consensus 85 iaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 146 (301)
T 1xky_A 85 IAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMY-QHFKAIAESTP-LPVMLYNV 146 (301)
T ss_dssp EEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHHHHHHHTCS-SCEEEEEC
T ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 322222244444 4577889999998888765433222 222 22256778888 99998753
No 68
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=74.41 E-value=6.8 Score=28.23 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=30.2
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
...++|++++.++..+-.+++.+..|.+ .|.+++++--
T Consensus 2 ~~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~T 39 (209)
T 3zqu_A 2 SGPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLIS 39 (209)
T ss_dssp CSCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEC
Confidence 3458999999999999998888866665 4888887753
No 69
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=74.27 E-value=18 Score=26.64 Aligned_cols=68 Identities=9% Similarity=-0.013 Sum_probs=42.5
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
....+...|.++...- ..-+.+.+++.+++.++|+|.++......... +..+.+.+-+...++||++-
T Consensus 143 va~~L~~~G~~Vi~LG-~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vG 210 (258)
T 2i2x_B 143 VTALLRANGYNVVDLG-RDVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACG 210 (258)
T ss_dssp HHHHHHHTTCEEEEEE-EECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEE
T ss_pred HHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEE
Confidence 4455666677765322 24689999999999999999999764333222 22344444333333777765
No 70
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=72.79 E-value=5.3 Score=33.10 Aligned_cols=111 Identities=7% Similarity=0.015 Sum_probs=65.3
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh---------------hHHHHHHHHHHHHHHHHhhhcCceeEEEE
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ---------------IVYDMSQGLMEKLAIEAMDVAMVRTKARI 113 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 113 (179)
|..-....||..|++ .+..|..|+|.++.... .......+.+..+. ..+...|... .+
T Consensus 14 DLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~-~~L~~~G~~L--~v 86 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLD-SSLKKLGSRL--LV 86 (537)
T ss_dssp CCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHH-HHHHHTTCCC--EE
T ss_pred CcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHH-HHHHHcCCce--EE
Confidence 455555667776653 35689999998753211 11223344555533 3344455554 46
Q ss_pred ecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 114 VEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 114 ~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
..|++.+.|.+++++.+++.|+.-.. ..+.... ......+.+.... |++..+.
T Consensus 87 ~~G~~~~vl~~L~~~~~~~~V~~n~~-~~p~~~~-RD~~v~~~l~~~g-I~~~~~~ 139 (537)
T 3fy4_A 87 FKGEPGEVLVRCLQEWKVKRLCFEYD-TDPYYQA-LDVKVKDYASSTG-VEVFSPV 139 (537)
T ss_dssp EESCHHHHHHHHHTTSCEEEEEECCC-CSHHHHH-HHHHHHHHHHHTT-CEEECCC
T ss_pred EECCHHHHHHHHHHHcCCCEEEEecc-ccHHHHH-HHHHHHHHHHHcC-CeEEEec
Confidence 67999999999999999999988653 2332211 1223344555566 6665443
No 71
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=71.47 E-value=19 Score=29.20 Aligned_cols=83 Identities=8% Similarity=-0.014 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh------hHHHHHHHHHHHHHHHHhhhcCceeEEEEe--cCChHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ------IVYDMSQGLMEKLAIEAMDVAMVRTKARIV--EGDAAKVICK 124 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~g~~~~~I~~ 124 (179)
....|+..|++. . .+++..++|.++.... .......+.+..+. +.+...|....+... .|++.+.|.+
T Consensus 14 ~DN~aL~~A~~~--~-~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~-~~L~~~G~~L~v~~~~~~g~~~~~l~~ 89 (471)
T 1dnp_A 14 HDNLALAAACRN--S-SARVLALYIATPRQWATHNMSPRQAELINAQLNGLQ-IALAEKGIPLLFREVDDFVASVEIVKQ 89 (471)
T ss_dssp TTCHHHHHHSSS--T-TSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHH-HHHHHTTCCEEEEECSSHHHHHHHHHH
T ss_pred cchHHHHHHHhC--C-CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHH-HHHHHCCCeEEEEEccCCCCHHHHHHH
Confidence 344566666542 1 2389999998753211 11223344555533 334555666544322 6899999999
Q ss_pred HHHHcCCcEEEEeeC
Q 030298 125 EAERLKPAAVVIGSR 139 (179)
Q Consensus 125 ~a~~~~~dliV~G~~ 139 (179)
++++.+++.|+.-..
T Consensus 90 l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 90 VCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHHcCCCEEEEecc
Confidence 999999999988643
No 72
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=71.47 E-value=30 Score=25.95 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. +.+.+.....+.. ..++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 18 iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-gr~pviaGvg~~~t~~ai~la~~a~~ 93 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGV--SGIVAVGTTGESPTLSHEEHKKVIEKVVDVV-N-GRVQVIAGAGSNCTEEAIELSVFAED 93 (289)
T ss_dssp ECHHHHHHHHHHHHHTTC--SEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TSSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEeCCCCCHHHHHHHHHHHHh
Confidence 344555555555444443 3344444333222 2333344444433332 2 12333222212244444 4577889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++-........+ -+. .--+.|...++ .|+++...
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~-~~f~~ia~a~~-lPiilYn~ 134 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLR-KHFGKVAESIN-LPIVLYNV 134 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCS-SCEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 999999888765543222 222 22256778888 99998753
No 73
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=71.42 E-value=31 Score=26.13 Aligned_cols=126 Identities=13% Similarity=0.068 Sum_probs=64.0
Q ss_pred cCCCeEEEE----ecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEE
Q 030298 39 RRGRDILIA----VDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKAR 112 (179)
Q Consensus 39 ~~~~~Ilv~----vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 112 (179)
.+++-|.++ +++..-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-
T Consensus 12 ~~~~Gv~~a~vTPf~dg~iD~~~l~~lv~~li~~Gv--~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~-~-grvpViaG 87 (306)
T 1o5k_A 12 HMFRGVGTAIVTPFKNGELDLESYERLVRYQLENGV--NALIVLGTTGESPTVNEDEREKLVSRTLEIV-D-GKIPVIVG 87 (306)
T ss_dssp CCCSEEEEECCCCEETTEECHHHHHHHHHHHHHTTC--CEEEESSGGGTGGGCCHHHHHHHHHHHHHHH-T-TSSCEEEE
T ss_pred cccCCeeeeeecCcCCCCcCHHHHHHHHHHHHHcCC--CEEEeCccccchhhCCHHHHHHHHHHHHHHh-C-CCCeEEEc
Confidence 456666653 44223355566555555544443 334443332222 22333444444433332 2 12443322
Q ss_pred EecCChHHH--HHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 113 IVEGDAAKV--ICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 113 ~~~g~~~~~--I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+-..+..++ +.+.|++.++|-+++-........+ -+. .--+.|+..++ .||++...
T Consensus 88 vg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 146 (306)
T 1o5k_A 88 AGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLY-QHYKYISERTD-LGIVVYNV 146 (306)
T ss_dssp CCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHH-HHHHHHHTTCS-SCEEEEEC
T ss_pred CCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEeC
Confidence 222245444 4577889999999888765543222 222 22245777888 99998753
No 74
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=71.42 E-value=19 Score=23.70 Aligned_cols=68 Identities=13% Similarity=-0.089 Sum_probs=38.6
Q ss_pred HHHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCC-CCcEEEE
Q 030298 98 AIEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCK-TAPIIVV 168 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~-~~pVlvv 168 (179)
....++..|+++... -...+.+.+++.+++.++|+|.++........ .+..+.+.+-+... +++|++=
T Consensus 23 v~~~l~~~G~~Vi~l-G~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNI-GVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHTTCEEEEE-EEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHCCCEEEEC-CCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 444556667665432 12357888888888888998888876532222 12344454433221 2556543
No 75
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=71.29 E-value=40 Score=27.43 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=52.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
+++++++.+...|..++..+.+. +.+++++|+........ . .+... +.++..|++..+.-..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~~~---e-~~~v~----~~~~~lgi~~~vv~~~~~f~~~ 277 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLRLG---E-REEVE----GALRALGVNLLVVDAKERFLKA 277 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSCTT---H-HHHHH----HHHHHTTCCEEEEECHHHHHHH
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCChH---H-HHHHH----HHHHHhCCCEEEEECcHHHHHh
Confidence 78999999999888877766554 67999999865422111 1 11222 2223345655433221
Q ss_pred --C--ChH-----------HHHHHHHHHc-CCcEEEEeeC
Q 030298 116 --G--DAA-----------KVICKEAERL-KPAAVVIGSR 139 (179)
Q Consensus 116 --g--~~~-----------~~I~~~a~~~-~~dliV~G~~ 139 (179)
| ++. ..+.++|++. +++.|+.|.+
T Consensus 278 l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~ 317 (503)
T 2ywb_A 278 LKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTL 317 (503)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCC
T ss_pred hcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 1 221 1344567777 9999999985
No 76
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=71.11 E-value=19 Score=27.36 Aligned_cols=89 Identities=18% Similarity=0.150 Sum_probs=53.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
+++++++.+...|..++..+.+. .|.+++++|+........ . .+...+...+..|++..+.-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g~~~~~---e----~~~~~~~~a~~lgi~~~vv~~~~~f~~~ 90 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTGFLRKG---E----PEFVVKTFRDEFGMNLHYVDAQDRFFSA 90 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSCCCTT---H----HHHHHHHHTTTTCCEEEEEECHHHHHHH
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCCCCChH---H----HHHHHHHHHHHcCCcEEEEECCHHHHHh
Confidence 68999999998888877766554 256789999865432111 1 1111112223445654433221
Q ss_pred --C--ChH-----------HHHHHHHHHcCCcEEEEeeCC
Q 030298 116 --G--DAA-----------KVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 116 --g--~~~-----------~~I~~~a~~~~~dliV~G~~~ 140 (179)
| ++. ..+.++|++.+++.|+.|.+.
T Consensus 91 l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~ 130 (308)
T 2dpl_A 91 LKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIA 130 (308)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCC
Confidence 1 222 124467888899999999764
No 77
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=70.78 E-value=24 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
++|+|++.+...|..++..+.+. +.++..+|+...
T Consensus 4 ~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 4 EKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 68999999998888877766553 367888998764
No 78
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=70.55 E-value=31 Score=25.87 Aligned_cols=112 Identities=8% Similarity=0.012 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....| ++.+.+.....+.. ..++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 18 iD~~~l~~lv~~li~~G--v~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-grvpviaGvg~~~t~~ai~la~~A~~ 93 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNG--TDAILVCGTTGESPTLTFEEHEKVIEFAVKRA-A-GRIKVIAGTGGNATHEAVHLTAHAKE 93 (294)
T ss_dssp ECHHHHHHHHHHHHTTT--CCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TSSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCC--CCEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 34555555555544444 34444444433222 2333344444433332 2 12343222222245444 4577889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++-........+ -+... -+.|+..++ .|+++...
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~-f~~va~a~~-lPiilYn~ 134 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEH-FKTVAQEVD-IPIIIYNI 134 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHH-HHHHHHHCC-SCEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHH-HHHHHHhcC-CCEEEEeC
Confidence 999999888765433222 22222 245778888 99998753
No 79
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=68.54 E-value=6.3 Score=27.67 Aligned_cols=111 Identities=11% Similarity=-0.006 Sum_probs=60.7
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCC-h
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD-A 118 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~-~ 118 (179)
++++|++++.++..+..+.+.+..|.+. |.+++++--..... ....+. ++.. .+. +.-..++ +
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T~~A~~-fi~~~~--------l~~l---~~~---~~d~~~~~~ 64 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH-FDEVNILFSPSSKN-FINTDV--------LKLF---CDN---LYDEIKDPL 64 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT-SSCEEEEECGGGGG-TSCGGG--------GGGT---SSC---EECTTTCTT
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEEchhHHH-HHHHHH--------HHHH---hCC---cccccCCCC
Confidence 3589999999999988888888777554 78887775322110 000110 1111 111 1111121 1
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccc---cCchhHHHHhcCCCCcEEEEcC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVL---QGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~---~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
... .+.++. +|++|+..-..+.+.++- ..+....++.... +|++++|.
T Consensus 65 ~~h-i~l~~~--aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~-~pvvlaPa 115 (181)
T 1g63_A 65 LNH-INIVEN--HEYILVLPASANTINKIANGICDNLLTTVCLTGY-QKLFIFPN 115 (181)
T ss_dssp CCH-HHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTG-GGEEEEEC
T ss_pred Ccc-cccccc--CCEEEEecCCHHHHHHHHccccCcHHHHHHHHcC-CCEEEEeC
Confidence 111 223455 999998875544433322 2334444445578 99999984
No 80
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=67.74 E-value=38 Score=26.82 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=28.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
++|++++.+...|..++.++.+. ++..+.++|+....
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g~ 37 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIGQ 37 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESSC
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCCC
Confidence 47899999998888888776543 36788889886543
No 81
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=67.42 E-value=28 Score=25.18 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHH---HHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKE---AERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~---a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
+......+...++.+..++..+++... ....++|.|| + + |+++..|-++.+ +||+-++.+.
T Consensus 29 ~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVII-S-R----------Ggta~~Lr~~~~-iPVV~I~vs~ 92 (225)
T 2pju_A 29 RDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAII-A-A----------GSNGAYLKSRLS-VPVILIKPSG 92 (225)
T ss_dssp HHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEE-E-E----------HHHHHHHHTTCS-SCEEEECCCH
T ss_pred HHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEE-e-C----------ChHHHHHHhhCC-CCEEEecCCH
Confidence 333343344455666667655554433 2334588444 3 1 678887877778 9999887654
No 82
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=67.25 E-value=5.1 Score=26.83 Aligned_cols=52 Identities=6% Similarity=0.034 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC-CCccc---cccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR-GLIQS---VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~-~~~~~---~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
..+.|.+++++++++.||+|-... ++..+ ......+++|-...+ +||..+-.
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~-lpV~~~DE 96 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFG-VEVKLHDE 96 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHC-CCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 478999999999999999995421 11111 111245666666668 99998844
No 83
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=66.66 E-value=39 Score=25.44 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 18 iD~~~l~~lv~~li~~Gv--~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~-~-grvpviaGvg~~~t~~ai~la~~A~~ 93 (297)
T 2rfg_A 18 VDEKALAGLVDWQIKHGA--HGLVPVGTTGESPTLTEEEHKRVVALVAEQA-Q-GRVPVIAGAGSNNPVEAVRYAQHAQQ 93 (297)
T ss_dssp ECHHHHHHHHHHHHHTTC--SEEECSSGGGTGGGSCHHHHHHHHHHHHHHH-T-TSSCBEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccchhhCCHHHHHHHHHHHHHHh-C-CCCeEEEccCCCCHHHHHHHHHHHHh
Confidence 344555555555444443 334443332222 22333444444433332 2 12444322222245444 4577889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEc
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.++|-+++-........+ -+. .--+.|...++ .|+++..
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn 133 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLY-QHFKMVHDAID-IPIIVYN 133 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHH-HHHHHHHHHCS-SCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEe
Confidence 999999888765543222 222 22246778888 9999875
No 84
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=66.52 E-value=17 Score=25.63 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=30.7
Q ss_pred EEEecCChHHHHHHHHH-HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 111 ARIVEGDAAKVICKEAE-RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 111 ~~~~~g~~~~~I~~~a~-~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
..+..++..+++...-+ ..++|.|| + + |+++..|-++.+ +||+-++.+.
T Consensus 31 i~i~~~~l~~~v~~a~~~~~~~dVII-S-R----------Ggta~~lr~~~~-iPVV~I~~s~ 80 (196)
T 2q5c_A 31 PITKTASLTRASKIAFGLQDEVDAII-S-R----------GATSDYIKKSVS-IPSISIKVTR 80 (196)
T ss_dssp EEEEECCHHHHHHHHHHHTTTCSEEE-E-E----------HHHHHHHHTTCS-SCEEEECCCH
T ss_pred eEEEECCHHHHHHHHHHhcCCCeEEE-E-C----------ChHHHHHHHhCC-CCEEEEcCCH
Confidence 34556665444432222 56788444 3 2 678887877778 9999887654
No 85
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=66.30 E-value=42 Score=26.48 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=36.8
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC---CCccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|++++. ...+....+ .++.++|.+++|+.+- +..-.. .|+..-.++ ++.. +|++|+-+
T Consensus 233 L~~~GIpvtl--I~Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~lAl~Ak~~~-vPfyV~ap 298 (383)
T 2a0u_A 233 CVQEDIPCTL--ICDGAASSL---MLNRKIDAVVVGADRICQNGDTANK-IGTYNLAVSAKFHG-VKLYVAAP 298 (383)
T ss_dssp HHHTTCCEEE--ECGGGHHHH---HHHSCCCEEEECCSEECTTCCEEEE-TTHHHHHHHHHHTT-CCEEEECC
T ss_pred HHHcCCCEEE--EehhHHHHH---hhcCCCCEEEECccEEecCCCEeec-ccHHHHHHHHHHcC-CCEEEeCC
Confidence 4456788763 233333333 3446799999999853 122222 366555555 4555 99999854
No 86
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=65.93 E-value=40 Score=25.29 Aligned_cols=111 Identities=9% Similarity=-0.013 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHhcc-CCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHH
Q 030298 53 NSKHAFDWALIHLCR-LADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAE 127 (179)
Q Consensus 53 ~s~~al~~a~~la~~-~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~ 127 (179)
-...+++.-+++... .|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|+
T Consensus 21 iD~~~l~~lv~~li~~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-grvpviaGvg~~~t~~ai~la~~a~ 96 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKV--DGLYVGGSTGENFMLSTEEKKEIFRIAKDEA-K-DQIALIAQVGSVNLKEAVELGKYAT 96 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCC--SEEEESSGGGTGGGSCHHHHHHHHHHHHHHH-T-TSSEEEEECCCSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhCCC--cEEEeCccccchhhCCHHHHHHHHHHHHHHh-C-CCCeEEEecCCCCHHHHHHHHHHHH
Confidence 345555555555444 443 334443332222 22333344444433332 2 12343322212244444 457788
Q ss_pred HcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEc
Q 030298 128 RLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 128 ~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+.++|-+++-........+ -+. .--+.|...++ .|+++..
T Consensus 97 ~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~-lPiilYn 137 (293)
T 1f6k_A 97 ELGYDCLSAVTPFYYKFSFPEIK-HYYDTIIAETG-SNMIVYS 137 (293)
T ss_dssp HHTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHHC-CCEEEEE
T ss_pred hcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEE
Confidence 8999999888765533222 222 22245777788 9999875
No 87
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=65.81 E-value=38 Score=25.36 Aligned_cols=111 Identities=13% Similarity=-0.008 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. +.+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 18 iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-gr~pviaGvg~~~t~~ai~la~~A~~ 93 (292)
T 2vc6_A 18 IDEVALHDLVEWQIEEGS--FGLVPCGTTGESPTLSKSEHEQVVEITIKTA-N-GRVPVIAGAGSNSTAEAIAFVRHAQN 93 (292)
T ss_dssp ECHHHHHHHHHHHHHTTC--SEEETTSGGGTGGGSCHHHHHHHHHHHHHHH-T-TSSCBEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEecCCccHHHHHHHHHHHHH
Confidence 344555555555444443 334443332222 22333444444433332 2 12444332222245444 4577889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEc
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.++|-+++-........+ -+. .--+.|...++ .||++..
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~-~~f~~ia~a~~-lPiilYn 133 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIY-QHFKAIDAAST-IPIIVYN 133 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCS-SCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEe
Confidence 999999888765433222 221 12246778888 9999875
No 88
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=65.59 E-value=43 Score=25.62 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=53.0
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHH
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVIC 123 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~ 123 (179)
.++....+......+ ..|...|.+++++ |.+..+... .. .+ .+.+...|++++. ...+....+.
T Consensus 124 ~ILTh~~S~tv~~~l----~~A~~~gk~~~V~-v~EsrP~~q----G~----~l-a~~L~~~gI~vtl--i~Dsa~~~~m 187 (315)
T 3ecs_A 124 TILTHAYSRVVLRVL----EAAVAAKKRFSVY-VTESQPDLS----GK----KM-AKALCHLNVPVTV--VLDAAVGYIM 187 (315)
T ss_dssp EEEECSCCHHHHHHH----HHHHTTTCCEEEE-EECCTTTTH----HH----HH-HHHHHTTTCCEEE--ECGGGHHHHG
T ss_pred EEEEcCCcHHHHHHH----HHHHHcCCeEEEE-EecCCCcch----HH----HH-HHHHHHcCCCEEE--EehhHHHHHH
Confidence 344445554333333 3444446667754 445433221 11 11 2233456788753 2333333333
Q ss_pred HHHHHcCCcEEEEeeCCC---CCccccccCchhHH-HHhcCCCCcEEEEcCC
Q 030298 124 KEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEY-CLHHCKTAPIIVVPGK 171 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~-ll~~~~~~pVlvv~~~ 171 (179)
. ++|.+++|+.+- +..... .|+..-. ++++.. +|++|+-+.
T Consensus 188 ~-----~vd~VivGAd~i~~nG~v~nk-iGT~~iAl~Ak~~~-vP~~V~a~~ 232 (315)
T 3ecs_A 188 E-----KADLVIVGAEGVVENGGIINK-IGTNQMAVCAKAQN-KPFYVVAES 232 (315)
T ss_dssp G-----GCSEEEEECSEECTTSCEEEE-TTHHHHHHHHHHTT-CCEEEECCG
T ss_pred H-----hCCEEEECceEEecCCCeeeh-hhhHHHHHHHHHhC-CCEEEEecc
Confidence 2 499999999852 222222 3554333 445666 999998543
No 89
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=64.62 E-value=34 Score=24.02 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
.+++|+|++.+...|..++..+. ..+.++.++|+....
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~----~~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILK----KLGYNPHLITINFGV 42 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHH----HTTEEEEEEEEECSS
T ss_pred cCCeEEEEEECcHHHHHHHHHHH----HcCCCeEEEEEeCCC
Confidence 44789999999998887775543 346688999986543
No 90
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=63.50 E-value=59 Score=26.46 Aligned_cols=111 Identities=6% Similarity=-0.036 Sum_probs=66.3
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh------HHHHHHHHHHHHHHHHhhhcCceeEEEEec-CChHHH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI------VYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GDAAKV 121 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 121 (179)
|.--....++..|++. + .+..|+|.++..... ......+.+..+. +.+...|..+. +.. |++.+.
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~-~~L~~~G~~L~--v~~~g~~~~~ 92 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLD-SSLRSLGTCLI--TKRSTDSVAS 92 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHH-HHHHHTTCCEE--EEECSCHHHH
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchHHHHHHHHHHHHHH-HHHHHCCCeEE--EEeCCCHHHH
Confidence 4445566778777664 2 567788877542211 1112334455433 33455566654 444 699999
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
|.+++++.+++.|+.... ..+..... .....+.+...+ |++..+..
T Consensus 93 l~~l~~~~~~~~V~~~~~-~~p~~~~r-d~~v~~~l~~~g-i~~~~~~~ 138 (509)
T 1u3d_A 93 LLDVVKSTGASQIFFNHL-YDPLSLVR-DHRAKDVLTAQG-IAVRSFNA 138 (509)
T ss_dssp HHHHHHHHTCCEEEEECC-CSHHHHHH-HHHHHHHHHTTT-CEEEEECC
T ss_pred HHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcC-cEEEEECC
Confidence 999999999999988743 23322211 223355566677 88877654
No 91
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=63.03 E-value=47 Score=25.19 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+-. +..++ +.+.|++
T Consensus 30 iD~~~l~~lv~~li~~Gv--~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~-~-grvpViaGvg~-st~~ai~la~~A~~ 104 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGI--EVIVPNGNTGEFYALTIEEAKQVATRVTELV-N-GRATVVAGIGY-SVDTAIELGKSAID 104 (314)
T ss_dssp BCHHHHHHHHHHHHHTTC--SEECTTSGGGTGGGSCHHHHHHHHHHHHHHH-T-TSSEEEEEECS-SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC--CEEEECcccCChhhCCHHHHHHHHHHHHHHh-C-CCCeEEecCCc-CHHHHHHHHHHHHH
Confidence 345555555555444443 333333322221 22333444444433332 2 23454443333 55454 4677889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEc
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.++|-+++-........+ -+. .--..|+..++ .||++..
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn 144 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAV-EYYRNIIEALD-APSIIYF 144 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHH-HHHHHHHHHSS-SCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEe
Confidence 999999888765543322 222 22246788889 9999986
No 92
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=62.95 E-value=49 Score=25.68 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=36.4
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC--C-CccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR--G-LIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~--~-~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+.+.|++++. ...+.... +.++.++|.+++|+.+- + ..-.. .|+..-.++ ++.. +|++|+-+
T Consensus 204 L~~~GI~vtl--I~Dsa~~~---~M~~~~Vd~VivGAd~V~aNG~v~NK-iGT~~lAl~Ak~~~-vPfyV~ap 269 (347)
T 1t9k_A 204 LMKDGIEVYV--ITDNMAGW---LMKRGLIDAVVVGADRIALNGDTANK-IGTYSLAVLAKRNN-IPFYVAAP 269 (347)
T ss_dssp HHTTTCEEEE--ECGGGHHH---HHHTTCCSEEEECCSEEETTSCEEEE-TTHHHHHHHHHHTT-CCEEEECC
T ss_pred HHhCCCCEEE--EehhHHHH---HhhcCCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcC-CCEEEecc
Confidence 4556788763 23333333 33446799999999862 2 22222 366555555 4555 99999854
No 93
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=62.93 E-value=50 Score=25.45 Aligned_cols=113 Identities=10% Similarity=-0.032 Sum_probs=57.4
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHH
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAE 127 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~ 127 (179)
.-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|+
T Consensus 48 ~ID~~~l~~lv~~li~~Gv--~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~-~-grvpViaGvg~~st~eai~la~~A~ 123 (343)
T 2v9d_A 48 QLDKPGTAALIDDLIKAGV--DGLFFLGSGGEFSQLGAEERKAIARFAIDHV-D-RRVPVLIGTGGTNARETIELSQHAQ 123 (343)
T ss_dssp SBCHHHHHHHHHHHHHTTC--SCEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TSSCEEEECCSSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCC--CEEEeCccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEecCCCCHHHHHHHHHHHH
Confidence 3455556555555544443 234444433222 22334444444433332 2 12443322222245444 457788
Q ss_pred HcCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 128 RLKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 128 ~~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.++|-+++-........ +-++. --..|+..++ .||++...
T Consensus 124 ~~Gadavlv~~P~Y~~~s~~~l~~-~f~~VA~a~~-lPiilYn~ 165 (343)
T 2v9d_A 124 QAGADGIVVINPYYWKVSEANLIR-YFEQVADSVT-LPVMLYNF 165 (343)
T ss_dssp HHTCSEEEEECCSSSCCCHHHHHH-HHHHHHHTCS-SCEEEEEC
T ss_pred hcCCCEEEECCCCCCCCCHHHHHH-HHHHHHHhcC-CCEEEEeC
Confidence 999999988876543322 22222 2245778888 99998753
No 94
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=62.11 E-value=40 Score=24.07 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=48.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CCh-
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GDA- 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~- 118 (179)
++|.|-+.++.....++-.+..- ...++++.+|....+.. .. + +..+..|+++...-.. .+.
T Consensus 8 ~ri~vl~SG~gsnl~all~~~~~-~~l~~~I~~Visn~~~a--~~-------l-----~~A~~~gIp~~~~~~~~~~~r~ 72 (209)
T 4ds3_A 8 NRVVIFISGGGSNMEALIRAAQA-PGFPAEIVAVFSDKAEA--GG-------L-----AKAEAAGIATQVFKRKDFASKE 72 (209)
T ss_dssp EEEEEEESSCCHHHHHHHHHHTS-TTCSEEEEEEEESCTTC--TH-------H-----HHHHHTTCCEEECCGGGSSSHH
T ss_pred ccEEEEEECCcHHHHHHHHHHHc-CCCCcEEEEEEECCccc--HH-------H-----HHHHHcCCCEEEeCccccCCHH
Confidence 57888888887766665555322 22334554444322211 10 1 2234456776532211 122
Q ss_pred --HHHHHHHHHHcCCcEEEEeeCC
Q 030298 119 --AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 119 --~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.+++++..++.++|++|+....
T Consensus 73 ~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 73 AHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHHHHHHHHHHCCSEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEeccc
Confidence 3688999999999999998764
No 95
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=61.75 E-value=16 Score=26.93 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-+++.+++++.|++|+.+.....-. -.-++.++.... +|.+|+..
T Consensus 55 ~~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~-iP~IvI~D 99 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSE-YPAVIIGD 99 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSS-SCEEEEEE
T ss_pred HhhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCC-CCEEEEcC
Confidence 4456678999999999976533222 135778888888 99999854
No 96
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=61.57 E-value=5 Score=27.22 Aligned_cols=55 Identities=5% Similarity=0.026 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC-CCcccc---ccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR-GLIQSV---LQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~-~~~~~~---~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
...+.|.+++++++++.||+|-.-. ++.... ..-.++..+....+ +||..+-...
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~-lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYN-VPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHC-SCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhC-CCEEEecCCC
Confidence 4678899999999999999995421 111110 01233445655567 9999885543
No 97
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=61.51 E-value=49 Score=24.80 Aligned_cols=113 Identities=12% Similarity=0.015 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHH
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAE 127 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~ 127 (179)
.-...+++.-+++....|. ..+.+.....+. ...++..+.++...+... ..+.+-.-+-..+..+ .+.+.|+
T Consensus 19 ~iD~~~l~~lv~~li~~Gv--~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~ 94 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNA--QAIIVNGTTAESPTLTTDEKELILKTVIDLVD--KRVPVIAGTGTNDTEKSIQASIQAK 94 (292)
T ss_dssp EECHHHHHHHHHHHHHTTC--CEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCC--CEEEECccccccccCCHHHHHHHHHHHHHHhC--CCCcEEEeCCcccHHHHHHHHHHHH
Confidence 4455666666666554443 334443332222 223344444444333321 2344433322234444 4456788
Q ss_pred HcCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 128 RLKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 128 ~~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.++|-+++......... +-+.. --+.|...++ .|+++...
T Consensus 95 ~~Gadavlv~~P~y~~~~~~~l~~-~f~~ia~a~~-lPiilYn~ 136 (292)
T 3daq_A 95 ALGADAIMLITPYYNKTNQRGLVK-HFEAIADAVK-LPVVLYNV 136 (292)
T ss_dssp HHTCSEEEEECCCSSCCCHHHHHH-HHHHHHHHHC-SCEEEEEC
T ss_pred HcCCCEEEECCCCCCCCCHHHHHH-HHHHHHHhCC-CCEEEEec
Confidence 899999988876543322 22222 2355777778 99998753
No 98
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=61.26 E-value=48 Score=24.79 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. +.+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 19 iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-gr~pvi~Gvg~~~t~~ai~la~~a~~ 94 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKT--DAIIVCGTTGEATTMTETERKETIKFVIDKV-N-KRIPVIAGTGSNNTAASIAMSKWAES 94 (291)
T ss_dssp BCHHHHHHHHHHHHHTTC--CEEEESSGGGTGGGSCHHHHHHHHHHHHHHH-T-TSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEeCCcccHHHHHHHHHHHHh
Confidence 455566555555544443 334444432222 22334444444433332 2 12443322222244444 4577889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEc
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.++|-+++-........+ -++.. -+.|...++ .|+++..
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~-f~~ia~a~~-lPiilYn 134 (291)
T 3a5f_A 95 IGVDGLLVITPYYNKTTQKGLVKH-FKAVSDAVS-TPIIIYN 134 (291)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHH-C-CTGGGCC-SCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHH-HHHHHHhcC-CCEEEEe
Confidence 999999888765433221 11111 133556677 9999875
No 99
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=61.07 E-value=49 Score=24.74 Aligned_cols=112 Identities=9% Similarity=-0.047 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 19 iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-gr~pviaGvg~~~t~~ai~la~~a~~ 94 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGT--SAIVSVGTTGESATLNHDEHADVVMMTLDLA-D-GRIPVIAGTGANATAEAISLTQRFND 94 (292)
T ss_dssp BCHHHHHHHHHHHHHHTC--CEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TSSCEEEECCCSSHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccchhhCCHHHHHHHHHHHHHHh-C-CCCcEEEecCCccHHHHHHHHHHHHh
Confidence 344555555454443343 334444443322 22333444444433332 2 12443322222244444 4566788
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++-........+ -+. .--+.|...++ .|+++...
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~-~~f~~ia~a~~-lPiilYn~ 135 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLY-QHFKAIAEHTD-LPQILYNV 135 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHH-HHHHHHHTTCS-SCEEEECC
T ss_pred cCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 999998888765433222 222 22255778888 99998753
No 100
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=60.97 E-value=36 Score=23.11 Aligned_cols=105 Identities=8% Similarity=-0.001 Sum_probs=59.6
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceeEEEEecC
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEG 116 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~g 116 (179)
....+|++-+.+... ..++.+|.++...+ |-++.. ... ....++. .|++++... .+
T Consensus 9 p~~g~V~lsv~D~dK-~~~v~~ak~~~~ll~Gf~l~A---T~g-----------------Ta~~L~e~~Gl~v~~v~-k~ 66 (152)
T 1b93_A 9 PARKHIALVAHDHCK-QMLMSWVERHQPLLEQHVLYA---TGT-----------------TGNLISRATGMNVNAML-SG 66 (152)
T ss_dssp CSSCEEEEEECGGGH-HHHHHHHHHTHHHHTTSEEEE---ETT-----------------HHHHHHHHHCCCCEEEC-CG
T ss_pred CCCCEEEEEEehhhH-HHHHHHHHHHHHHhCCCEEEE---ccH-----------------HHHHHHHHhCceeEEEE-ec
Confidence 344788888876654 56788888887764 333321 111 0111122 578887543 33
Q ss_pred -C-hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 117 -D-AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 117 -~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
. ....|.+..++.++|+||--....+.-.+.--|....++.-... +|++
T Consensus 67 ~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~-IP~~ 117 (152)
T 1b93_A 67 PMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWN-IPVA 117 (152)
T ss_dssp GGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTT-CCEE
T ss_pred CCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcC-CCEE
Confidence 2 34589999999999999998762221111111333444444455 6654
No 101
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=60.60 E-value=53 Score=24.96 Aligned_cols=128 Identities=15% Similarity=0.049 Sum_probs=66.5
Q ss_pred cccCCCeEEEEe----c-CCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCcee
Q 030298 37 ERRRGRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRT 109 (179)
Q Consensus 37 ~~~~~~~Ilv~v----d-~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~ 109 (179)
+..+++-|++++ + +..-...+++.-+++....|. ..+.+.....+.. ..++..+.++...+... ..+.+
T Consensus 19 ~~~~~~Gv~~alvTPf~~dg~iD~~~l~~li~~li~~Gv--~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~--grvpV 94 (315)
T 3si9_A 19 PGSMLKGAVTALITPFDDNGAIDEKAFCNFVEWQITQGI--NGVSPVGTTGESPTLTHEEHKRIIELCVEQVA--KRVPV 94 (315)
T ss_dssp --CCCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTC--SEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCB
T ss_pred CCccCCceeEeeECCCCCCCCcCHHHHHHHHHHHHHcCC--CEEEeCccccCccccCHHHHHHHHHHHHHHhC--CCCcE
Confidence 455677777754 3 223455566655555544443 3344444333222 23333444444333322 23444
Q ss_pred EEEEecCChHH--HHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 110 KARIVEGDAAK--VICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 110 ~~~~~~g~~~~--~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-.-+-..+..+ .+.+.|++.++|-+++-........+ -++ .--+.|...++ .||++..-
T Consensus 95 iaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~-lPiilYn~ 156 (315)
T 3si9_A 95 VAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLY-THFSSIAKAIS-IPIIIYNI 156 (315)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCS-SCEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHcCC-CCEEEEeC
Confidence 33222224444 44567889999999988765443222 222 22356778888 99998753
No 102
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=60.13 E-value=56 Score=25.05 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=63.3
Q ss_pred CCeEEEE----ecC-CcchHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEE
Q 030298 41 GRDILIA----VDH-GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARI 113 (179)
Q Consensus 41 ~~~Ilv~----vd~-s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 113 (179)
++-|+.+ ++. ..-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+
T Consensus 35 ~~Gv~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv--~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~-~-grvpViaGv 110 (332)
T 2r8w_A 35 FKGLSAFPITPADEAGRVDIEAFSALIARLDAAEV--DSVGILGSTGIYMYLTREERRRAIEAAATIL-R-GRRTLMAGI 110 (332)
T ss_dssp GCEEEECCCCCBCTTCCBCHHHHHHHHHHHHHHTC--SEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TSSEEEEEE
T ss_pred cCCeeEEeeCCcCCCCCcCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEec
Confidence 5666653 332 23445555555555444443 334444433322 22334444444433332 2 124433322
Q ss_pred ecCChHHH--HHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 114 VEGDAAKV--ICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 114 ~~g~~~~~--I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-..+..++ +.+.|++.++|-+++-........+ -++. --+.|+..++ .||++...
T Consensus 111 g~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~-~f~~VA~a~~-lPiilYn~ 168 (332)
T 2r8w_A 111 GALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYH-HFAAVAGATA-LPLAIYNN 168 (332)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHH-HHHHHHHHCS-SCEEEECC
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHH-HHHHHHHhcC-CCEEEEeC
Confidence 22245444 4577889999999888765543222 2222 2255778888 99998753
No 103
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=59.05 E-value=20 Score=29.54 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=52.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
+++++++.+...|..++..+.+. .|.+++++|+...... .+. .+...+...+..|++..+.-..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~~~---~~e----~~~~~~~~a~~lgi~~~vv~~~~~~~~~ 300 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGLLR---LNE----VDEVLNVFQKHLGAKVICVDAKDRFMKA 300 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSCSC---TTH----HHHHHHHHTTSSCCEEEEECCHHHHHSS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCCCC---hhH----HHHHHHHHHHHcCCcEEEEeChHHHHHh
Confidence 78999999999888877766554 3568999998654321 111 1122223445556655432211
Q ss_pred --C--ChHH-----------HHHHHHHHcCCcEEEEeeC
Q 030298 116 --G--DAAK-----------VICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 116 --g--~~~~-----------~I~~~a~~~~~dliV~G~~ 139 (179)
| ++.. .+.++|++.+++.|+.|.+
T Consensus 301 l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~ 339 (527)
T 3tqi_A 301 LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTI 339 (527)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCC
T ss_pred hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEcccc
Confidence 1 2221 1335678889999999974
No 104
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=58.76 E-value=29 Score=23.52 Aligned_cols=39 Identities=8% Similarity=-0.008 Sum_probs=24.9
Q ss_pred HHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 100 EAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
..++..|.++. ... ..+.+.+++.+++.++|+|.++...
T Consensus 40 ~~l~~~G~eVi--~lG~~~p~e~lv~aa~~~~~diV~lS~~~ 79 (161)
T 2yxb_A 40 RALRDAGFEVV--YTGLRQTPEQVAMAAVQEDVDVIGVSILN 79 (161)
T ss_dssp HHHHHTTCEEE--CCCSBCCHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHCCCEEE--ECCCCCCHHHHHHHHHhcCCCEEEEEeec
Confidence 34455565543 222 2467788888888888888887763
No 105
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=58.53 E-value=44 Score=26.26 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=36.6
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC---CCccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR---GLIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|++++. ...+....+ .++.++|.+++|+.+- +..-.. .|+..-.++ ++.. +|++|+-+
T Consensus 229 L~~~GIpvtl--I~Dsa~~~~---M~~~~Vd~ViVGAD~V~aNG~v~NK-iGTy~lAl~Ak~~~-vPfyV~ap 294 (374)
T 2yvk_A 229 LMQGGIDVTL--ITDSMAAHT---MKEKQISAVIVGADRIAKNGDTANK-IGTYGLAILANAFD-IPFFVAAP 294 (374)
T ss_dssp HHTTTCEEEE--ECGGGHHHH---HHHTTCCEEEECCSEEETTCCEEEE-TTHHHHHHHHHHTT-CCEEEECC
T ss_pred HHHcCCCEEE--EehhHHHHH---hhhcCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcC-CCEEEecc
Confidence 4556788763 333333333 3346799999999752 222222 366555555 4555 99999854
No 106
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=58.26 E-value=19 Score=25.48 Aligned_cols=67 Identities=7% Similarity=0.004 Sum_probs=40.8
Q ss_pred HHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC--CCCcEEEE
Q 030298 98 AIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC--KTAPIIVV 168 (179)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~--~~~pVlvv 168 (179)
....++..|.++. ... ..+.+.+++.+++.++|+|.+.......... +..+.+.+-+.. +++||++-
T Consensus 108 va~~l~~~G~~v~--~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 108 VAMMLESGGFTVY--NLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp HHHHHHHTTCEEE--ECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEE
T ss_pred HHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEE
Confidence 4445566677654 233 4589999999999999999999764322221 233444443332 22777765
No 107
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=57.68 E-value=50 Score=23.70 Aligned_cols=83 Identities=16% Similarity=0.053 Sum_probs=48.9
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CC--
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GD-- 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~-- 117 (179)
.+|.|-+.++.+...++-.+..-. .+.++.+|....+.. .. . +..+..|+++...-.. .+
T Consensus 6 ~riavl~SG~Gsnl~all~~~~~~--~~~eI~~Vis~~~~a--~~-----------~-~~A~~~gIp~~~~~~~~~~~r~ 69 (215)
T 3tqr_A 6 LPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAVISNRADA--YG-----------L-KRAQQADIPTHIIPHEEFPSRT 69 (215)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEEEESCTTC--HH-----------H-HHHHHTTCCEEECCGGGSSSHH
T ss_pred cEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEEEeCCcch--HH-----------H-HHHHHcCCCEEEeCccccCchh
Confidence 578888888877766666554432 455555544422211 10 1 2234456776432111 11
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+++++..++.++|++|+...+
T Consensus 70 ~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 70 DFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEESSCC
T ss_pred HhHHHHHHHHHhcCCCEEEEccch
Confidence 24678999999999999998764
No 108
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=57.62 E-value=52 Score=23.93 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=27.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
.+|+|++.+...|..++..+.++. .++.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 489999999999988888776664 35778887554
No 109
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=57.41 E-value=21 Score=25.15 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=27.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
++|++++.++..+..+.+.+..|.+. |.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 78999999998888888887777554 78887775
No 110
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=57.27 E-value=59 Score=24.44 Aligned_cols=115 Identities=9% Similarity=-0.011 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHH
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEA 126 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a 126 (179)
..-...+++.-+++....|. ..+.+.....+.. ..++..+.++...+.. ....+.+-.-+-..+..+ .+.+.|
T Consensus 23 g~iD~~~l~~lv~~li~~Gv--~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~-~g~rvpviaGvg~~~t~~ai~la~~a 99 (301)
T 3m5v_A 23 GKVDEQSYARLIKRQIENGI--DAVVPVGTTGESATLTHEEHRTCIEIAVETC-KGTKVKVLAGAGSNATHEAVGLAKFA 99 (301)
T ss_dssp TEECHHHHHHHHHHHHHTTC--CEEECSSTTTTGGGSCHHHHHHHHHHHHHHH-TTSSCEEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 33445556555555544443 3444444333222 2333344444433332 210234332221124444 445678
Q ss_pred HHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 127 ERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 127 ~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++.++|-+++-........+ -+.. --+.|...++ .||++..-
T Consensus 100 ~~~Gadavlv~~P~y~~~s~~~l~~-~f~~va~a~~-lPiilYn~ 142 (301)
T 3m5v_A 100 KEHGADGILSVAPYYNKPTQQGLYE-HYKAIAQSVD-IPVLLYNV 142 (301)
T ss_dssp HHTTCSEEEEECCCSSCCCHHHHHH-HHHHHHHHCS-SCEEEEEC
T ss_pred HHcCCCEEEEcCCCCCCCCHHHHHH-HHHHHHHhCC-CCEEEEeC
Confidence 89999999998765443322 2222 2356788888 99998753
No 111
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=57.23 E-value=60 Score=24.48 Aligned_cols=112 Identities=8% Similarity=-0.073 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. +.+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 34 iD~~~l~~lv~~li~~Gv--~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~-~-grvpviaGvg~~st~~ai~la~~A~~ 109 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGL--DSLVLAGTTGESPTTTAAEKLELLKAVREEV-G-DRAKLIAGVGTNNTRTSVELAEAAAS 109 (304)
T ss_dssp BCHHHHHHHHHHHHHTTC--CEEEESSTTTTTTTSCHHHHHHHHHHHHHHH-T-TTSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEecCCCCCHHHHHHHHHHHHh
Confidence 445556555555544443 334444433222 22333444444433332 2 12443322222245444 4677889
Q ss_pred cCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++-........ +-++. --..|...++ .|+++...
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~-~f~~ia~a~~-lPiilYn~ 150 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLA-HFGAIAAATE-VPICLYDI 150 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHH-HHHHHHHHCC-SCEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHHH-HHHHHHHhcC-CCEEEEeC
Confidence 99999888776543322 22222 2245778888 99998753
No 112
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=57.03 E-value=33 Score=26.52 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=35.3
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC--C-CccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR--G-LIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~--~-~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|++++. +..+ ....+. .++|++++|+.+- + ..-.. .|+..-.++ ++.. +|++|+-+
T Consensus 188 L~~~GI~vtl-I~Ds-a~~~~M-----~~Vd~VivGAd~V~anG~v~NK-iGT~~lAl~Ak~~~-vPfyV~a~ 251 (338)
T 3a11_A 188 LASYGIPVIY-VVDS-AARHYM-----KMTDKVVMGADSITVNGAVINK-IGTALIALTAKEHR-VWTMIAAE 251 (338)
T ss_dssp HHHTTCCEEE-ECGG-GTTTTG-----GGCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTT-CEEEEECC
T ss_pred HHhCCCCEEE-EehH-HHHHHH-----HhCCEEEECccEEecCCCEeec-ccHHHHHHHHHHcC-CCEEEecc
Confidence 4456888764 3333 222222 4499999999863 2 12222 366555555 4555 99999854
No 113
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=56.94 E-value=35 Score=21.66 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=13.0
Q ss_pred CChHHHHHHHHHH-cCCcEEEEeeC
Q 030298 116 GDAAKVICKEAER-LKPAAVVIGSR 139 (179)
Q Consensus 116 g~~~~~I~~~a~~-~~~dliV~G~~ 139 (179)
.+..+++..+.+. ..+|+|++...
T Consensus 52 ~~~~~~~~~~~~~~~~~dlvi~D~~ 76 (146)
T 4dad_A 52 VGRAAQIVQRTDGLDAFDILMIDGA 76 (146)
T ss_dssp CCCHHHHTTCHHHHTTCSEEEEECT
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 3444444444444 56777777654
No 114
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=56.69 E-value=48 Score=25.63 Aligned_cols=80 Identities=10% Similarity=0.031 Sum_probs=45.8
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
...+++..++|.++|+....+++++|=.... ........+..++.. .+..++.++..+ ..+..-.++..= .+
T Consensus 153 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvl--k~s~glf~~~~~eva---~eyp~i~~~~~~-vD~~~mqlv~~P--~~ 224 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRRKHLTLVHKTNVL--TFAGGLWLRTVDEVG---ECYPDVEVAYQH-VDAATIHMITDP--GR 224 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEECTTTS--HHHHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHCG--GG
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCccc--hhhhHHHHHHHHHHH---HHCCceEEEEEE-HHHHHHHHhhCc--cc
Confidence 4667899999999998887788888753322 112223333333322 234456666443 334444444433 34
Q ss_pred CcEEEEee
Q 030298 131 PAAVVIGS 138 (179)
Q Consensus 131 ~dliV~G~ 138 (179)
+|.||...
T Consensus 225 FDVivt~N 232 (337)
T 1w0d_A 225 FDVIVTDN 232 (337)
T ss_dssp CSEEEECH
T ss_pred ccEEEECc
Confidence 88777653
No 115
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=56.45 E-value=77 Score=25.48 Aligned_cols=88 Identities=10% Similarity=0.002 Sum_probs=47.2
Q ss_pred EecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---HHH
Q 030298 47 AVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK---VIC 123 (179)
Q Consensus 47 ~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~---~I~ 123 (179)
+..++-.+..+...|..+++ .|.++.++.+..... ...+.+. ...+..++++.......++.+ ..+
T Consensus 107 G~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~------aa~eqL~----~~~~~~gvpv~~~~~~~dp~~i~~~al 175 (443)
T 3dm5_A 107 GIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRP------GAYHQLR----QLLDRYHIEVFGNPQEKDAIKLAKEGV 175 (443)
T ss_dssp CCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSST------HHHHHHH----HHHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcch------hHHHHHH----HHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 44455556667777766665 466777665532211 1112222 223334555432111235543 445
Q ss_pred HHHHHcCCcEEEEeeCCCCCcc
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQ 145 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~ 145 (179)
+.++..++|+|++.+.++....
T Consensus 176 ~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 176 DYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHhCCCCEEEEECCCcccch
Confidence 6677788999999988765533
No 116
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=56.35 E-value=49 Score=25.70 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=36.6
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHH-hcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCL-HHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll-~~~~~~pVlvv~~ 170 (179)
+...|++++.. ..+.... +.++.++|++++|+.+- ++.-. -.|+..-.++ ++.. +|++|+-+
T Consensus 202 L~~~GI~vtlI--~Dsa~~~---~M~~~~Vd~VivGAd~V~aNGv~N-KiGT~~lAl~Ak~~~-vPfyV~a~ 266 (351)
T 1t5o_A 202 LMEDGIDVTLI--TDSMVGI---VMQKGMVDKVIVGADRIVRDAVFN-KIGTYTVSVVAKHHN-IPFYVAAP 266 (351)
T ss_dssp HHHTTCCEEEE--CGGGHHH---HHHTTCCSEEEECCSEEETTEEEE-ETTHHHHHHHHHHTT-CCEEEECC
T ss_pred HHhCCCCEEEE--ehhHHHH---HhhcCCCCEEEECccchhhcCccc-ccCHHHHHHHHHHcC-CCEEEeCc
Confidence 44567887632 3333333 33446799999999863 22211 2466555555 4555 99999854
No 117
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=56.20 E-value=45 Score=25.78 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
...+++.+++|.++|.....+++++|=..... .......+..++ ..++ ++.++..+ ..+..-.++..- .+
T Consensus 143 ~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk--~t~glf~~~~~e----va~~-~I~~~~~~-vD~~~~~lv~~P--~~ 212 (336)
T 1wpw_A 143 RFASERIAKVGLNFALRRRKKVTCVHKANVMR--ITDGLFAEACRS----VLKG-KVEYSEMY-VDAAAANLVRNP--QM 212 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTCT--THHHHHHHHHHH----HHTT-TSEEEEEE-HHHHHHHHHHCG--GG
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEECCcchh--hhhHHHHHHHHH----HHHh-CceeEEEe-HHHHHHHHhhCc--cc
Confidence 36678999999999988877888887543321 112233333333 2222 57666543 334444444433 34
Q ss_pred CcEEEEee
Q 030298 131 PAAVVIGS 138 (179)
Q Consensus 131 ~dliV~G~ 138 (179)
+|.||...
T Consensus 213 FDVivt~N 220 (336)
T 1wpw_A 213 FDVIVTEN 220 (336)
T ss_dssp CSEEEECH
T ss_pred ceEEEEcC
Confidence 88777653
No 118
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=55.88 E-value=64 Score=24.43 Aligned_cols=52 Identities=15% Similarity=-0.017 Sum_probs=32.1
Q ss_pred ChHHH--HHHHHHHcCC-cEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 117 DAAKV--ICKEAERLKP-AAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~--I~~~a~~~~~-dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++ +.+.|++.++ |-+++......... +-++ .--+.|...++ .|+++...
T Consensus 87 ~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 142 (311)
T 3h5d_A 87 DTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMY-QHFKAIADASD-LPIIIYNI 142 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHH-HHHHHHHHSCS-SCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEec
Confidence 44444 3466788776 98887765443322 2222 22366888888 99998753
No 119
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=55.44 E-value=55 Score=23.48 Aligned_cols=82 Identities=12% Similarity=-0.034 Sum_probs=48.2
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CC--
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GD-- 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~-- 117 (179)
.+|.|-+.++.....++-.+.. ...++++.++ ...... . ..+..+..|+++...-.. .+
T Consensus 13 ~ri~vl~SG~gsnl~all~~~~--~~~~~eI~~V--is~~~a-~------------~~~~A~~~gIp~~~~~~~~~~~r~ 75 (215)
T 3da8_A 13 ARLVVLASGTGSLLRSLLDAAV--GDYPARVVAV--GVDREC-R------------AAEIAAEASVPVFTVRLADHPSRD 75 (215)
T ss_dssp EEEEEEESSCCHHHHHHHHHSS--TTCSEEEEEE--EESSCC-H------------HHHHHHHTTCCEEECCGGGSSSHH
T ss_pred cEEEEEEeCChHHHHHHHHHHh--ccCCCeEEEE--EeCCch-H------------HHHHHHHcCCCEEEeCcccccchh
Confidence 6899999988776666554432 2334455444 333221 1 012234456776543111 11
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+++++..++.++|++|+...+
T Consensus 76 ~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 76 AWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECC
T ss_pred hhhHHHHHHHHhhCCCEEEEcCch
Confidence 14578899999999999998764
No 120
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=54.90 E-value=37 Score=21.40 Aligned_cols=55 Identities=7% Similarity=0.071 Sum_probs=30.2
Q ss_pred cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCC
Q 030298 115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEA 173 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~ 173 (179)
..+..+++..+.+...+|+|++...-......+ ...+.+-+... +|++++-....
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~-~~ii~ls~~~~ 89 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISE-LPVVFLTAHTE 89 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCC-CCEEEEESSSS
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCC-CCEEEEECCCC
Confidence 345555544443336789999987642212221 23444544445 89988865443
No 121
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=54.16 E-value=69 Score=24.29 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=65.0
Q ss_pred CCCeEEEEe----c-CCcchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEE
Q 030298 40 RGRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKAR 112 (179)
Q Consensus 40 ~~~~Ilv~v----d-~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 112 (179)
+++-|+.++ + +..-...+++.-+++....|.. .+.+.....+ ....++..+.++...+.... .+.+-.-
T Consensus 24 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~--Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~g--rvpViaG 99 (315)
T 3na8_A 24 SIHGIIGYTITPFAADGGLDLPALGRSIERLIDGGVH--AIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAH--RVPTIVS 99 (315)
T ss_dssp CCCEEEEECCCCBCTTSSBCHHHHHHHHHHHHHTTCS--EEECSSGGGTGGGSCHHHHHHHHHHHHHHHTT--SSCBEEE
T ss_pred ccCceEEEeeCcCCCCCCcCHHHHHHHHHHHHHcCCC--EEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCcEEEe
Confidence 456666654 3 2234556666665655544543 3333333222 22233444444443333222 2444332
Q ss_pred EecCChHH--HHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 113 IVEGDAAK--VICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 113 ~~~g~~~~--~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+-..+..+ .+.+.|++.++|-+++-........+ -++ .--+.|+..++ .||++..-
T Consensus 100 vg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 158 (315)
T 3na8_A 100 VSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVF-QHYRAVGEAIG-VPVMLYNN 158 (315)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHH-HHHHHHHHHCS-SCEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCC-CcEEEEeC
Confidence 22224444 44567889999999998765443322 222 22356788888 99998753
No 122
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=52.39 E-value=70 Score=23.81 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=33.4
Q ss_pred ChHHH--HHHHHHHcCCcEEEEeeCCCCC-cc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 117 DAAKV--ICKEAERLKPAAVVIGSRGRGL-IQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~--I~~~a~~~~~dliV~G~~~~~~-~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++ +.+.|++.++|-+++-...... .. .-+. .--+.|...++ .|+++...
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 130 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIA-KYFRDLCSAVS-IPVFLYNY 130 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHH-HHHHHHHHHCS-SCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 44444 4567888999999888765543 22 2222 12245778888 99998753
No 123
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=52.38 E-value=23 Score=24.62 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
.++|++++.++..+..+++.+..|.+ .|.+++++--.. ....... +. ++.. .+ ++. ....+...
T Consensus 5 ~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T~~--A~~fi~~---~~----l~~l---~~-~v~--~~~~~~~~ 68 (175)
T 3qjg_A 5 GENVLICLCGSVNSINISHYIIELKS-KFDEVNVIASTN--GRKFING---EI----LKQF---CD-NYY--DEFEDPFL 68 (175)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEECTG--GGGGSCH---HH----HHHH---CS-CEE--CTTTCTTC
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEECcC--HHHHhhH---HH----HHHh---cC-CEE--ecCCCCcc
Confidence 38999999999988888887755554 578877765321 1111110 01 1221 12 211 11111222
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCcccc---ccCchhHHHHhcCCCCcEEEEcC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSV---LQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~---~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
..+..++. +|++|+..-..+.+.++ +..+....++.... +|++++|.
T Consensus 69 ~hi~l~~~--aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~-~pvvl~Pa 118 (175)
T 3qjg_A 69 NHVDIANK--HDKIIILPATSNTINKIANGICDNLLLTICHTAF-EKLSIFPN 118 (175)
T ss_dssp CHHHHHHT--CSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCG-GGEEEEEC
T ss_pred ccccccch--hCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcC-CCEEEEec
Confidence 34555555 99999887554433332 22334444566678 99999984
No 124
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=52.21 E-value=46 Score=22.27 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=5.0
Q ss_pred CcEEEEeeCC
Q 030298 131 PAAVVIGSRG 140 (179)
Q Consensus 131 ~dliV~G~~~ 140 (179)
+|.||+|+.-
T Consensus 57 ~d~ii~Gspt 66 (159)
T 3fni_A 57 CTGLVIGMSP 66 (159)
T ss_dssp EEEEEEECCB
T ss_pred CCEEEEEcCc
Confidence 4555555443
No 125
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=51.44 E-value=74 Score=23.80 Aligned_cols=112 Identities=9% Similarity=-0.067 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. +.+.+.....+.. ..++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 21 iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-~-gr~pviaGvg~~~t~~ai~la~~A~~ 96 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGC--DSVTLFGTTGEGCSVGSRERQAILSSFIAAG-I-APSRIVTGVLVDSIEDAADQSAEALN 96 (294)
T ss_dssp BCHHHHHHHHHHHHHTTC--SEEEESSTTTTGGGSCHHHHHHHHHHHHHTT-C-CGGGEEEEECCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEeCCCccHHHHHHHHHHHHh
Confidence 344555555555444443 3344444433222 2233334444333221 1 12444333322345444 4677889
Q ss_pred cCCcEEEEeeCCCCC-cc-ccccCchhHHHHhcC---CCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGL-IQ-SVLQGSVGEYCLHHC---KTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~-~~-~~~~gs~~~~ll~~~---~~~pVlvv~~ 170 (179)
.++|-+++-...... .. .-++. --..|+..+ + .|+++...
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~-~f~~va~a~p~~~-lPiilYn~ 141 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFA-WFSAVFSKIGKDA-RDILVYNI 141 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHH-HHHHHHHHHCTTC-CCEEEEEC
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHH-HHHHHHHhcCCCC-CcEEEEEC
Confidence 999999888765433 22 22222 224577777 7 99998753
No 126
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=50.74 E-value=69 Score=25.08 Aligned_cols=78 Identities=8% Similarity=-0.021 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
...+++.+++|.++|+....+++++|=..... ......+..++.. .+.++++++..+ ..+..-.++..=. +
T Consensus 173 r~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk---t~glf~~~~~eva---~eypdV~~~~~~-VD~~~mqlv~~P~--~ 243 (366)
T 1vlc_A 173 RKTVERIARTAFEIAKNRRKKVTSVDKANVLY---SSMLWRKVVNEVA---REYPDVELTHIY-VDNAAMQLILKPS--Q 243 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---HHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHCGG--G
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECCcccc---cchHHHHHHHHHH---HHCCCceEEeee-HHHHHHHHhhCcc--c
Confidence 36678999999999988877888887543321 2223333333322 234456666443 3344444444434 4
Q ss_pred CcEEEEe
Q 030298 131 PAAVVIG 137 (179)
Q Consensus 131 ~dliV~G 137 (179)
+|.||..
T Consensus 244 FDVivt~ 250 (366)
T 1vlc_A 244 FDVILTT 250 (366)
T ss_dssp CSEEEEC
T ss_pred ceEEEEc
Confidence 8877765
No 127
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=50.64 E-value=46 Score=21.23 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=21.1
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++.++...+|+|++...-.+ ...+ ...+.+-+..+++|++++-.
T Consensus 58 al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 102 (150)
T 4e7p_A 58 AIQLLEKESVDIAILDVEMPV-KTGL---EVLEWIRSEKLETKVVVVTT 102 (150)
T ss_dssp HHHHHTTSCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEES
T ss_pred HHHHhhccCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEeC
Confidence 334445556777777654321 1111 23344443333366666644
No 128
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=50.59 E-value=73 Score=24.57 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHc
Q 030298 51 GPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~ 129 (179)
...+++.+++|.++|...+ .+++++|=..... .......+..++.. .+.+++.++..+ ..+..-.++..- .
T Consensus 143 ~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk--~t~glf~~~~~eva---~eyp~I~~~~~~-vD~~~m~lv~~P--~ 214 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRPRKTLHIAHKANVLP--LTQGLFLDTVKEVA---KDFPLVNVQDII-VDNCAMQLVMRP--E 214 (333)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCT--THHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEecCccch--hhhHHHHHHHHHHH---HHCCCceEEEEE-HHHHHHHHhhCc--c
Confidence 4667899999999999884 5788887543221 12223333443322 234456666443 334444444433 3
Q ss_pred CCcEEEEe
Q 030298 130 KPAAVVIG 137 (179)
Q Consensus 130 ~~dliV~G 137 (179)
++|.||..
T Consensus 215 ~FDVivt~ 222 (333)
T 1x0l_A 215 RFDVIVTT 222 (333)
T ss_dssp GCSEEEEC
T ss_pred cceEEEEc
Confidence 48877765
No 129
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=50.49 E-value=53 Score=21.90 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=15.8
Q ss_pred CceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCC
Q 030298 106 MVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGR 141 (179)
Q Consensus 106 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~ 141 (179)
|++++..-........+.....+ +|.||+|+.-.
T Consensus 29 g~~v~~~~~~~~~~~~~~~~~~~--~d~ii~Gspty 62 (161)
T 3hly_A 29 GVAVEMVDLRAVDPQELIEAVSS--ARGIVLGTPPS 62 (161)
T ss_dssp TCCEEEEETTTCCHHHHHHHHHH--CSEEEEECCBS
T ss_pred CCeEEEEECCCCCHHHHHHHHHh--CCEEEEEcCCc
Confidence 44444332223333344433334 67777776544
No 130
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=50.15 E-value=79 Score=23.80 Aligned_cols=112 Identities=10% Similarity=-0.058 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+.. ..++..+.++...+... ..+.+-.-+-..+..+ .+.+.|++
T Consensus 33 iD~~~l~~lv~~li~~Gv--~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~~ 108 (304)
T 3l21_A 33 LDTATAARLANHLVDQGC--DGLVVSGTTGESPTTTDGEKIELLRAVLEAVG--DRARVIAGAGTYDTAHSIRLAKACAA 108 (304)
T ss_dssp BCHHHHHHHHHHHHHTTC--SEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TTSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEeCccccchhhCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 445556655555554443 3344444333222 23333444444333322 1244433222224444 44567889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++.........+ -++ .--+.|...++ .||++..-
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 149 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQ-AHFTAVADATE-LPMLLYDI 149 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHH-HHHHHHHTSCS-SCEEEEEC
T ss_pred cCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 999999998765443322 222 22356888888 99998753
No 131
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=49.92 E-value=43 Score=20.63 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++..+...+|+|++...-.+ ... -...+.+-+..+.+|++++-..
T Consensus 42 ~a~~~l~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 42 DALELLGGFTPDLMICDIAMPR-MNG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHhcCCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 3344556667888888865322 111 1233444444444788777554
No 132
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=49.62 E-value=65 Score=24.84 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=16.0
Q ss_pred hhcCceeEEEEecCCh----HHHHHHHHHHcCCcEEE
Q 030298 103 DVAMVRTKARIVEGDA----AKVICKEAERLKPAAVV 135 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV 135 (179)
+..++++.+.+..|++ .+.+.+.+++.++|+||
T Consensus 55 ~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~II 91 (370)
T 1jq5_A 55 KKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVI 91 (370)
T ss_dssp HTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEE
T ss_pred HHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3344554333334432 33455555666666655
No 133
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=49.47 E-value=25 Score=26.57 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEE-EcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIV-VPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlv-v~~ 170 (179)
+++.+.+.+.|.|++|+.+-+.+... +..+...|-+..+ .|+++ .|+
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~-lPvil~fPP 105 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATP-LPVVLHFPP 105 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCS-SCEEEECCC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCC-CCEEEECCC
Confidence 56667778999999993333222332 2355565656688 99999 883
No 134
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=49.41 E-value=69 Score=22.89 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=50.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CCh-
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GDA- 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~- 118 (179)
++|.|-+.++.....++-.+.+- ...++++.+|....+.. ...+..+..|+++...... .+.
T Consensus 3 ~riavl~Sg~Gsnl~ali~~~~~-~~l~~eI~~Visn~~~a--------------~v~~~A~~~gIp~~~~~~~~~~~r~ 67 (211)
T 3p9x_A 3 KRVAIFASGSGTNAEAIIQSQKA-GQLPCEVALLITDKPGA--------------KVVERVKVHEIPVCALDPKTYPSKE 67 (211)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHT-TCCSSEEEEEEESCSSS--------------HHHHHHHTTTCCEEECCGGGSSSHH
T ss_pred CEEEEEEeCCchHHHHHHHHHHc-CCCCcEEEEEEECCCCc--------------HHHHHHHHcCCCEEEeChhhcCchh
Confidence 67888888887766666655432 33456666655432211 1222334457776432211 122
Q ss_pred --HHHHHHHHHHcCCcEEEEeeCC
Q 030298 119 --AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 119 --~~~I~~~a~~~~~dliV~G~~~ 140 (179)
...+++..++.++|++|+...+
T Consensus 68 ~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 68 AYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCC
T ss_pred hhHHHHHHHHHhcCCCEEEEeCch
Confidence 4688899999999999998764
No 135
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=49.29 E-value=83 Score=23.75 Aligned_cols=87 Identities=10% Similarity=-0.089 Sum_probs=51.0
Q ss_pred ccCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHh---hhcCceeEEEEe
Q 030298 38 RRRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAM---DVAMVRTKARIV 114 (179)
Q Consensus 38 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~ 114 (179)
-....++++.+.+ -.|..+.- ++...|..++.+|+... .. ..+......+... -..+++.. +.
T Consensus 176 ~g~~~kvlvllSG-vDS~vaa~----ll~~~G~~v~~v~~~~~---~~----~~~~a~~~a~~l~~~~~~~~i~~~--vv 241 (307)
T 1vbk_A 176 IGTEGRMIGILHD-ELSALAIF----LMMKRGVEVIPVYIGKD---DK----NLEKVRSLWNLLKRYSYGSKGFLV--VA 241 (307)
T ss_dssp TTTTCEEEEECSS-HHHHHHHH----HHHHBTCEEEEEEESCS---SH----HHHHHHHHHHHHHTTCTTSCCCCE--EE
T ss_pred cCCCCcEEEEEeC-CcHHHHHH----HHHhCCCeEEEEEEEEC---HH----HHHHHHHHHHHHhhhccCCCCcEE--Ee
Confidence 3445799999999 77765443 44456889999998721 11 1112222222221 11234443 22
Q ss_pred cCChHHHHHHHHHHcCCcEEEEeeCC
Q 030298 115 EGDAAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.. ...+.++|++.++|.|+.|.+.
T Consensus 242 ~~--~~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 242 ES--FDRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp SS--HHHHHHHHHHHTCCEEECCCCG
T ss_pred CC--CHHHHHHHHHcCCCEEEECccc
Confidence 21 3344489999999999999774
No 136
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=49.28 E-value=44 Score=26.78 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=39.6
Q ss_pred hhhcCceeEEEEecC-ChHH---HHHHHHHHcCC-cEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEG-DAAK---VICKEAERLKP-AAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g-~~~~---~I~~~a~~~~~-dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..|+++++.+..- ...+ .+.+.++..++ +.||.++...+.+. --+...++ +||+-||..
T Consensus 288 l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp--------gvva~~t~-~PVIgvP~~ 353 (425)
T 2h31_A 288 CGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG--------PVMSGNTA-YPVISCPPL 353 (425)
T ss_dssp HHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH--------HHHHHHCS-SCEEECCCC
T ss_pred HHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH--------hHHhccCC-CCEEEeeCc
Confidence 345678888877653 3334 44444556678 68888877544433 33556688 999999974
No 137
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=47.60 E-value=23 Score=22.44 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=33.3
Q ss_pred hhhcCceeEEEEe-cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 102 MDVAMVRTKARIV-EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 102 ~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+..|++++..-. .+... +... ++|+|++|..-+..+. . .++...... +||.++++..
T Consensus 30 a~~~gi~v~i~a~~~~~~~----~~~~--~~DvvLLgPQV~y~~~-----~-ik~~~~~~~-ipV~vI~~~~ 88 (108)
T 3nbm_A 30 ANLTEVRVIANSGAYGAHY----DIMG--VYDLIILAPQVRSYYR-----E-MKVDAERLG-IQIVATRGME 88 (108)
T ss_dssp HHHHTCSEEEEEEETTSCT----TTGG--GCSEEEECGGGGGGHH-----H-HHHHHTTTT-CEEEECCHHH
T ss_pred HHHCCCceEEEEcchHHHH----hhcc--CCCEEEEChHHHHHHH-----H-HHHHhhhcC-CcEEEeCHHH
Confidence 3444677765432 23322 2233 4999999976432222 2 355566667 9999987643
No 138
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=47.38 E-value=57 Score=23.79 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=49.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCc-hhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC---C
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQ-NQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG---D 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g---~ 117 (179)
.++++.+++...|..++-.+. ..|-++..++..-... ....... ..+ +.++...+..|++..+.-..| +
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s~~~h~--~~~-e~a~~~A~~LGIpl~~v~~~g~~~~ 77 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEESYMYHT--INA-NLTDLQARALGIPLVKGFTQGEKEK 77 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC--------C--CSS-SHHHHHHHHHTCCEEEEEC------
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCccccCC--ccH-HHHHHHHHHcCCCEEEEECCCCchH
Confidence 479999999988887666543 4466776665432221 1111100 000 112233444567665444444 3
Q ss_pred hHHHHHHHHHHcCCcEEEEeeC
Q 030298 118 AAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~ 139 (179)
-.+.+.+..++.+++.+|.|.-
T Consensus 78 e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 78 EVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp CHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHHHHHHHhcCCcEEEECCc
Confidence 4677778888779999999974
No 139
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=47.33 E-value=69 Score=25.34 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKP 131 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 131 (179)
..+++.+++|.++|+....+|+++|=.... .....+.+..++.. .+.++++++..+ ..+..-.++.. -.++
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~KaNVl---~t~glfr~~~~eva---~eYPdV~~~~~~-VD~~amqLV~~--P~~F 256 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKANVL---ESSRLWREVAEEVA---KEYPDVELEHML-VDNAAMQLIRN--PRQF 256 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC---HHHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHC--GGGC
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECCccc---ccchHHHHHHHHHH---hHCCCCeEEeee-HHHHHHHHHhC--cccC
Confidence 567889999999998887888888753322 22223333333321 234566666443 33444444443 3448
Q ss_pred cEEEEe
Q 030298 132 AAVVIG 137 (179)
Q Consensus 132 dliV~G 137 (179)
|.||..
T Consensus 257 DViVt~ 262 (390)
T 3u1h_A 257 DVIVTE 262 (390)
T ss_dssp SEEEEC
T ss_pred cEEEec
Confidence 877765
No 140
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=46.77 E-value=90 Score=23.48 Aligned_cols=83 Identities=8% Similarity=-0.083 Sum_probs=51.2
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-CCh-
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GDA- 118 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~- 118 (179)
.++|.|-+.++.+...++-.+.+- ...++++.++....++. . ...+..|+++...-.. .+.
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~------------~----~~A~~~gIp~~~~~~~~~~r~ 157 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELKMDIVGIVSNHPDF------------A----PLAAQHGLPFRHFPITADTKA 157 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSSTT------------H----HHHHHTTCCEEECCCCSSCHH
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCCcEEEEEEeCcHHH------------H----HHHHHcCCCEEEeCCCcCCHH
Confidence 478999998887777776666443 33456666554433211 0 1134456776532111 221
Q ss_pred --HHHHHHHHHHcCCcEEEEeeCC
Q 030298 119 --AKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 119 --~~~I~~~a~~~~~dliV~G~~~ 140 (179)
.+++++..++.++|++|+....
T Consensus 158 ~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 158 QQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCEEEecCch
Confidence 3578899999999999998764
No 141
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=46.24 E-value=43 Score=23.73 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=27.2
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
+|++++.++..+-.+.+.+..|.+..|.+++++-
T Consensus 2 ~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 2 KLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred EEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 7999999999888888888777554378887775
No 142
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=46.07 E-value=95 Score=23.51 Aligned_cols=125 Identities=8% Similarity=-0.008 Sum_probs=62.8
Q ss_pred CCCeEEEEe----c-CCcchHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEE
Q 030298 40 RGRDILIAV----D-HGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKAR 112 (179)
Q Consensus 40 ~~~~Ilv~v----d-~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 112 (179)
+++-|+.++ + +..-...+++.-+++....|. ..+.+.....+ ....++..+.++...+... ..+.+-.-
T Consensus 23 ~~~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv--~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~--grvpViaG 98 (314)
T 3qze_A 23 MIAGSMVALVTPFDAQGRLDWDSLAKLVDFHLQEGT--NAIVAVGTTGESATLDVEEHIQVIRRVVDQVK--GRIPVIAG 98 (314)
T ss_dssp CCCEEEEECCCCBCTTSCBCHHHHHHHHHHHHHHTC--CEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT--TSSCEEEE
T ss_pred cCCeeEEeeECCCCCCCCcCHHHHHHHHHHHHHcCC--CEEEECccccChhhCCHHHHHHHHHHHHHHhC--CCCcEEEe
Confidence 345555543 2 223345556555555544443 33333333222 1223334444444333322 12444322
Q ss_pred EecCChHH--HHHHHHHHcCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEcC
Q 030298 113 IVEGDAAK--VICKEAERLKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 113 ~~~g~~~~--~I~~~a~~~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+-..+..+ .+.+.|++.++|-+++.........+ -+. .--+.|+..++ .||++...
T Consensus 99 vg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn~ 157 (314)
T 3qze_A 99 TGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMY-QHFRHIAEAVA-IPQILYNV 157 (314)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHSC-SCEEEEEC
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEeC
Confidence 22224444 44567889999999998765443222 222 22356778888 99998753
No 143
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=45.63 E-value=96 Score=23.48 Aligned_cols=120 Identities=9% Similarity=0.129 Sum_probs=73.1
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-CChHH
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GDAAK 120 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~ 120 (179)
-+|||++.........++++..+... .+-++++++.+........+. ++. +.+.+++.++...+++.. .++..
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~-~G~ltv~~i~p~~~~~~l~~q----l~~-l~~~l~~r~v~a~~~vi~a~d~~~ 94 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYP-KGSVKLLGLAGNTDKENLLSQ----LPS-ISEGFQEEGVFSSWTIIDTAEFEE 94 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTT-TCEEEEEECC---CTTCHHHH----HHH-HHHHHHHTTCEEEEEEC-----CH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccC-ceeEEEEEEccCCCccHHHHH----HHH-HHHHHHhCCceeEEEEEecCChhH
Confidence 57999997777888889999888765 667999998765432210111 333 344566677877777765 47777
Q ss_pred HHHHHHHHc-----CCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 121 VICKEAERL-----KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 121 ~I~~~a~~~-----~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++....+.+ ....|++|..... ...--+-.+..++ .+.. ..|++++.
T Consensus 95 G~~~lvq~yglg~l~PNTilLg~~~~~-e~~~~y~~~i~~~-~~~~-~nVlil~~ 146 (294)
T 3g40_A 95 NLVVGMEALTGSFFRPSILFLRLPENR-DRDEEIREIIRKA-SMYR-MGVLLFSK 146 (294)
T ss_dssp HHHHHHHHHTTCSSCSCEEEEECCSSG-GGHHHHHHHHHHH-HHTT-CEEEEEEC
T ss_pred HHHHHHHHcCCCCCCCCEEEeCCCCCh-hhhHHHHHHHHHH-HHhC-ceEEEEec
Confidence 777766554 4678999977432 2221123444444 3567 99999964
No 144
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=45.57 E-value=97 Score=23.47 Aligned_cols=83 Identities=10% Similarity=-0.004 Sum_probs=50.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-CC--
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GD-- 117 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~-- 117 (179)
.++|.|-+.++.....++-.+.+- ...++++.++....++. ....+..|+++...-.. .+
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~I~~Visn~~~~----------------~~~A~~~gIp~~~~~~~~~~r~ 167 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-DELDCDIACVISNHQDL----------------RSMVEWHDIPYYHVPVDPKDKE 167 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-TCSCSEEEEEEESSSTT----------------HHHHHTTTCCEEECCCCSSCCH
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-CCCCcEEEEEEECcHHH----------------HHHHHHcCCCEEEcCCCcCCHH
Confidence 478999998887776666655432 33456666554433220 01234456776532111 12
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+++++..++.++|++|+....
T Consensus 168 ~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 168 PAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCEEEHhHhh
Confidence 24578999999999999998764
No 145
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=45.32 E-value=26 Score=25.62 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
...+++...+.++|+|.+|-+..-..... -.+.+++- ... .|+++.+..
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~--~~~v~~ir-~~~-~Pivl~~y~ 70 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKA--RTLIEKVS-QYG-LPIVVEPSD 70 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHH--HHHHHHHT-TSC-CCEEECCSS
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHH--HHHHHHhc-CCC-CCEEEecCC
Confidence 34567788888999999997422222222 13445453 356 999988764
No 146
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=45.05 E-value=94 Score=23.16 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+.. ..++..+.++...+... ..+.+-.-+-..+..+ .+.+.|++
T Consensus 19 iD~~~l~~lv~~li~~Gv--~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~--gr~pviaGvg~~~t~~ai~la~~a~~ 94 (291)
T 3tak_A 19 VDWKSLEKLVEWHIEQGT--NSIVAVGTTGEASTLSMEEHTQVIKEIIRVAN--KRIPIIAGTGANSTREAIELTKAAKD 94 (291)
T ss_dssp BCHHHHHHHHHHHHHHTC--CEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC--CEEEECccccccccCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCCCHHHHHHHHHHHHh
Confidence 344555555555444443 3344444333222 23333444444333322 1244433222224444 44567889
Q ss_pred cCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 129 LKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++|-+++......... +-++ .--+.|...++ .||++..-
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~-~~f~~ia~a~~-lPiilYn~ 135 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLY-QHYKAIAEAVE-LPLILYNV 135 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCC-SCEEEEEC
T ss_pred cCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhcC-CCEEEEec
Confidence 99999998876543322 2222 22356788888 99998753
No 147
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=44.44 E-value=98 Score=23.20 Aligned_cols=83 Identities=10% Similarity=0.034 Sum_probs=50.6
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-CC--
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GD-- 117 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~-- 117 (179)
.++|.|-+.++.....++-.+.+- ...++++.++....+.. . ...+..|+++.+.-.. .+
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~Visn~~~~------------~----~~A~~~gIp~~~~~~~~~~r~ 152 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAVVSNHPDL------------E----PLAHWHKIPYYHFALDPKDKP 152 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEEEESSSTT------------H----HHHHHTTCCEEECCCBTTBHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEEEeCcHHH------------H----HHHHHcCCCEEEeCCCcCCHH
Confidence 468999998887777766665432 33456666655433220 0 1134456776532111 22
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+.+++..++.++|++|+....
T Consensus 153 ~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 153 GQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHHHHHHhcCCCEEEecccc
Confidence 13578899999999999998764
No 148
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=44.36 E-value=29 Score=25.38 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++.+.+.++|.|.+|-+..-..... -.+.+.|-+ .+ .|+++.|..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~~--~~~v~~ik~-~~-~Piil~p~~ 73 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDNV--IHLMSKIRR-YP-LPLVLEISN 73 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHHH--HHHHHHHTT-SC-SCEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHHH--HHHHHHhcC-cC-CCEEEecCC
Confidence 455556788999999997532222222 234454444 77 999999875
No 149
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=44.00 E-value=21 Score=26.06 Aligned_cols=47 Identities=13% Similarity=-0.014 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++.+.+.++|.|.+|-+..-..... -.+.+.+-+ .+ .|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~~--~~~v~~ik~-~~-~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDNV--LRMMSKVRR-FL-VPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHHH--HHHHHHHTT-SS-SCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHHH--HHHHHHhhc-cC-CCEEEeCCC
Confidence 345556688999999997532222221 234444433 77 999999876
No 150
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=43.91 E-value=1.1e+02 Score=23.96 Aligned_cols=79 Identities=9% Similarity=-0.018 Sum_probs=45.4
Q ss_pred CcchHHHHHHHHHHhccCCC-EEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHc
Q 030298 51 GPNSKHAFDWALIHLCRLAD-TIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~-~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~ 129 (179)
...+++..++|.++|...+. +++++|=.... ........+..++.. .+..++.++..+ ..+..-.++..= .
T Consensus 165 ~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvl--k~s~glf~~~~~eva---~eypdv~~~~~~-vD~~am~lv~~P--~ 236 (364)
T 3flk_A 165 RRGVDRILKYAFDLAEKRERKHVTSATKSNGM--AISMPYWDKRTEAMA---AHYPHVSWDKQH-IDILCARFVLQP--E 236 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEECTTTS--TTHHHHHHHHHHHHH---TTCTTCEEEEEE-HHHHHHHHHHCG--G
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEECcchh--hhHHHHHHHHHHHHH---HHCCCceEEeeE-HHHHHHHHHhCc--c
Confidence 36678899999999988876 69988853322 112223334443322 234466666443 334444444443 4
Q ss_pred CCcEEEEe
Q 030298 130 KPAAVVIG 137 (179)
Q Consensus 130 ~~dliV~G 137 (179)
++|.||..
T Consensus 237 ~FDVivt~ 244 (364)
T 3flk_A 237 RFDVVVAS 244 (364)
T ss_dssp GCSEEEEC
T ss_pred cCcEEEec
Confidence 48877765
No 151
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=43.27 E-value=26 Score=27.20 Aligned_cols=49 Identities=12% Similarity=0.302 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+....++..++ +|+||+|.... +-...++...+.+. +++++ +|++.|.+
T Consensus 178 a~p~al~AI~~--AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~-A~kV~V~N 228 (341)
T 2p0y_A 178 AVQPVIDAIMA--ADQIVLGPGSLFTSILPNLTIGNIGRA-VCESD-AEVVYICN 228 (341)
T ss_dssp CCHHHHHHHHH--CSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCS-SEEEEECC
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHhcccccCccHHHH-HHhCC-CCEEEEeC
Confidence 45667788888 99999997642 22344555666665 56688 99998876
No 152
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=43.24 E-value=82 Score=21.97 Aligned_cols=35 Identities=9% Similarity=-0.088 Sum_probs=21.9
Q ss_pred CceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCC
Q 030298 106 MVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 106 ~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
+.++++.-+. ++..+.+.+...+ +|.||+++.-..
T Consensus 47 g~~v~~~dL~~~~d~~~~~~~l~~--AD~iV~~~P~y~ 82 (204)
T 2amj_A 47 GHDVRIVRADSDYDVKAEVQNFLW--ADVVIWQMPGWW 82 (204)
T ss_dssp TCEEEEEESSSCCCHHHHHHHHHH--CSEEEEEEECBT
T ss_pred CCEEEEEeCCccccHHHHHHHHHh--CCEEEEECCccc
Confidence 5555544443 3446666666777 888888886543
No 153
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=43.19 E-value=1.3e+02 Score=24.46 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhhcCceeEEEEecC--Ch---HHHHHHHH-HHcCCcEEEEeeCCCCCccccccCchhHHHHhcCC
Q 030298 88 DMSQGLMEKLAIEAMDVAMVRTKARIVEG--DA---AKVICKEA-ERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCK 161 (179)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~~---~~~I~~~a-~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~ 161 (179)
+...+..++..+.+.....+++++.- .| .. ...+.+.+ +..++|.||+-.+..+.. ...-.+++...
T Consensus 25 ~~v~~~~~~~~~~l~~~~~l~~~vv~-~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a------~~~i~~l~~l~ 97 (500)
T 4f2d_A 25 RQVTQHAEHVVNALNTEAKLPCKLVL-KPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPA------KMWINGLTMLN 97 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSEEEE-CCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCT------HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEe-cCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccH------HHHHHHHHhcC
Confidence 33333444444444344445665433 33 23 33444455 455789999887654442 34456778899
Q ss_pred CCcEEEEcC
Q 030298 162 TAPIIVVPG 170 (179)
Q Consensus 162 ~~pVlvv~~ 170 (179)
+|||+...
T Consensus 98 -~PvL~~~~ 105 (500)
T 4f2d_A 98 -KPLLQFHT 105 (500)
T ss_dssp -SCEEEEEC
T ss_pred -CCEEEEeC
Confidence 99999853
No 154
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=43.18 E-value=85 Score=24.67 Aligned_cols=77 Identities=9% Similarity=0.029 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKP 131 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 131 (179)
..+++.+++|.++|.....+|+++|=.... . ....+.+..++.. .+.++++++..+ ..+..-.++..= .++
T Consensus 179 ~~~eRIar~AFe~A~~rrkkVT~v~KaNvl--~-~~glf~~~~~eva---~eypdV~~~~~~-VD~~am~lv~~P--~~F 249 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRRKKVTSVDKANVL--A-CSVLWREVVEEVA---KDYPDVELEHIY-IDNATMQLLRRP--NEF 249 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTC--H-HHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHCG--GGC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchhh--h-hhhHHHHHHHHHH---HHCCCceEeeee-HHHHHHHHHhCc--ccC
Confidence 567889999999998887888888753322 1 1123333333321 234466666443 334444444433 348
Q ss_pred cEEEEe
Q 030298 132 AAVVIG 137 (179)
Q Consensus 132 dliV~G 137 (179)
|.||..
T Consensus 250 DViVt~ 255 (375)
T 3vmk_A 250 DVMLCS 255 (375)
T ss_dssp SEEEEC
T ss_pred cEEEEC
Confidence 877765
No 155
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.91 E-value=56 Score=19.95 Aligned_cols=50 Identities=14% Similarity=0.001 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc--CCCCcEEEEcCCCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH--CKTAPIIVVPGKEA 173 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~--~~~~pVlvv~~~~~ 173 (179)
+..++..++..+|+|++...-.+ ...+ ...+.+-+. .+++|++++-....
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~~~ 88 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSGFAK 88 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEECC-C
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEECCcc
Confidence 34445666778999999976432 1211 234555443 33389988865543
No 156
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=42.81 E-value=84 Score=24.56 Aligned_cols=77 Identities=12% Similarity=0.044 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKP 131 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 131 (179)
..+++.+++|.++|+....+++++|=.... .....+.+..++. ..+.++++++..+ .....-.++.- -.++
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaNvl---~t~glf~~~~~ev---a~eypdV~~~~~~-VD~~am~lv~~--P~~F 237 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKANVL---ASSILWREVVANV---AKDYQDINLEYMY-VDNAAMQIVKN--PSIF 237 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTTTC---HHHHHHHHHHHHH---GGGCTTSEEEEEE-HHHHHHHHHHC--GGGC
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECchhh---ccchHHHHHHHHH---HHHCCCCeEEeee-HHHHHHHHHhC--cccC
Confidence 567889999999998887889988753322 1222333333322 2234466666443 33444444443 3448
Q ss_pred cEEEEe
Q 030298 132 AAVVIG 137 (179)
Q Consensus 132 dliV~G 137 (179)
|.||..
T Consensus 238 DViVt~ 243 (361)
T 3udu_A 238 DVMLCS 243 (361)
T ss_dssp SEEEEC
T ss_pred cEEEec
Confidence 877765
No 157
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=42.67 E-value=31 Score=24.35 Aligned_cols=110 Identities=9% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEE-ecC--C
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARI-VEG--D 117 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~g--~ 117 (179)
.++|++++.++..+..+.+.+..|.+ .|.+++++--. ...+.+.... ++. +.-.+.. ..+ +
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~----------~A~~fi~~~~---~~~--l~~~v~~~~~~~~~ 71 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMTK----------TAEDLIPAHT---VSY--FCDHVYSEHGENGK 71 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEECH----------HHHHHSCHHH---HGG--GSSEEECTTCSSSC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEch----------hHHHHHHHHH---HHH--hcCCEeccccccCC
Confidence 37999999999988888887766654 57888777421 1111111111 111 1111111 111 1
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccc---cCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVL---QGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~---~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+.. =+.+++. +|++|+..-..+.+.++- ..+....++.... +|++++|.
T Consensus 72 ~~~-hi~l~~~--aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~-~pvvl~Pa 123 (194)
T 1p3y_1 72 RHS-HVEIGRW--ADIYCIIPATANILGQTANGVAMNLVATTVLAHP-HNTIFFPN 123 (194)
T ss_dssp CCC-HHHHHHH--CSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSS-SCCEEEEC
T ss_pred CcC-ccccccc--CCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcC-CCEEEEEC
Confidence 111 1233455 999988875544433322 2344444445577 99999986
No 158
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=42.41 E-value=68 Score=20.80 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGKE 172 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~~ 172 (179)
.+..++ ++..++..+|+|++...-. ...++ .+.++|-. ..+++||+++....
T Consensus 44 ~~g~~a-l~~~~~~~~DlillD~~MP-~mdG~---el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 44 DDGLTA-LPMLKKGDFDFVVTDWNMP-GMQGI---DLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp SSHHHH-HHHHHHHCCSEEEEESCCS-SSCHH---HHHHHHHHSTTTTTCCEEEEESSC
T ss_pred CCHHHH-HHHHHhCCCCEEEEcCCCC-CCCHH---HHHHHHHhCCCCCCCeEEEEECCC
Confidence 344444 3455667899999987633 22221 23344432 12238888886543
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=42.38 E-value=1.3e+02 Score=24.02 Aligned_cols=84 Identities=11% Similarity=-0.049 Sum_probs=43.9
Q ss_pred cCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH---HHHHH
Q 030298 49 DHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK---VICKE 125 (179)
Q Consensus 49 d~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~---~I~~~ 125 (179)
.++-.+..+...|..++. .+.++.++.+..... ...+.+. ......++++.......++.. ..+..
T Consensus 106 ~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~------~a~eqL~----~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 106 QGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRP------AAYDQLL----QLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp TTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCH------HHHHHHH----HHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH-cCCeEEEEecCccch------hHHHHHH----HHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 445555666666666654 577887777643211 1111222 222333454332111124432 33445
Q ss_pred HHHcCCcEEEEeeCCCCC
Q 030298 126 AERLKPAAVVIGSRGRGL 143 (179)
Q Consensus 126 a~~~~~dliV~G~~~~~~ 143 (179)
+...++|+|++.+.++..
T Consensus 175 a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp TTTTTCSEEEEEECCCSS
T ss_pred HHhcCCCEEEEECCCCcc
Confidence 555689999999988755
No 160
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=42.35 E-value=60 Score=20.13 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=24.5
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++..+...+|+|++...-.+ ...+ ...+.+-+..+++|++++-..
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 43 GERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecC
Confidence 344445567888888865322 1111 234445444444777777543
No 161
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=42.26 E-value=55 Score=23.31 Aligned_cols=68 Identities=9% Similarity=-0.026 Sum_probs=40.5
Q ss_pred HHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEE--eeCCCCCccccccCchhHHHHhcCC--CCcEEEE
Q 030298 97 LAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVI--GSRGRGLIQSVLQGSVGEYCLHHCK--TAPIIVV 168 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~--G~~~~~~~~~~~~gs~~~~ll~~~~--~~pVlvv 168 (179)
.....++..|.++. ... .-+.+.|++.++++++|+|.+ +..-..... .+..+.+.+-.... ++||++-
T Consensus 111 iv~~~l~~~G~~Vi--~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 111 LVTTMLGANGFQIV--DLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHHTSCEEE--ECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHHCCCeEE--EcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 34455666677653 233 358999999999999999999 544221111 12344454544332 2777664
No 162
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=42.00 E-value=1.2e+02 Score=23.38 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=28.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHh---ccCCCEEEEEEEe
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHL---CRLADTIHLVHAV 78 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la---~~~~~~l~~v~v~ 78 (179)
.++|++++|++.....+...+...+ ...|.++.++...
T Consensus 206 ~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP 246 (338)
T 1dd9_A 206 TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLP 246 (338)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEEC
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 4789999999998888888887763 3346677776653
No 163
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=41.84 E-value=1.1e+02 Score=22.97 Aligned_cols=113 Identities=11% Similarity=0.044 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+ ....++..+.++...+... ..+.+-.-+-..+..+ .+.+.|++
T Consensus 22 iD~~~l~~lv~~li~~Gv--~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~a~~ 97 (300)
T 3eb2_A 22 VRADVMGRLCDDLIQAGV--HGLTPLGSTGEFAYLGTAQREAVVRATIEAAQ--RRVPVVAGVASTSVADAVAQAKLYEK 97 (300)
T ss_dssp BCHHHHHHHHHHHHHTTC--SCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHT--TSSCBEEEEEESSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccCccccCHHHHHHHHHHHHHHhC--CCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 344555555555444443 22333322221 1223334444444333322 2355544333334444 44567889
Q ss_pred cCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 129 LKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++|-+++......... +-+. .--+.|+..++ .|+++..-+
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~-lPiilYn~P 139 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIE-SYFRAIADAVE-IPVVIYTNP 139 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHH-HHHHHHHHHCS-SCEEEEECT
T ss_pred cCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHHCC-CCEEEEECc
Confidence 99999999876554332 2222 23366888899 999998643
No 164
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=41.78 E-value=91 Score=22.11 Aligned_cols=105 Identities=9% Similarity=0.036 Sum_probs=57.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CCh-
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GDA- 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~- 118 (179)
++|.|-+.++.....++-.+..- ...+.++.+|...+..... . +.....|+++.+.... .+.
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~~~~~~I~~Vvs~~~~~~~-------------~-~~A~~~gIp~~~~~~~~~~~r~ 65 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-PNSSAQIDIVISNKAAVAG-------------L-DKAERAGIPTRVINHKLYKNRV 65 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-TTCSCEEEEEEESSTTCHH-------------H-HHHHHTTCCEEECCGGGSSSHH
T ss_pred CeEEEEEECCchHHHHHHHHHhc-CCCCcEEEEEEeCCCChHH-------------H-HHHHHcCCCEEEECccccCchh
Confidence 36788888887777666544322 2234566555543322110 1 2234456776432211 221
Q ss_pred --HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 --AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 --~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.+.+..++.++|++|+...++ + ....++...+ ..++=+++.
T Consensus 66 ~~~~~~~~~l~~~~~Dliv~a~y~~-----i----l~~~~l~~~~-~~~iNiHpS 110 (209)
T 1meo_A 66 EFDSAIDLVLEEFSIDIVCLAGFMR-----I----LSGPFVQKWN-GKMLNIHPS 110 (209)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCCS-----C----CCHHHHHHTT-TSEEEEESS
T ss_pred hhhHHHHHHHHhcCCCEEEEcchhh-----h----CCHHHHhhhc-CCEEEEccC
Confidence 35788888999999999987642 1 1244555555 555555443
No 165
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=41.73 E-value=30 Score=26.72 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+....++..++ +|+||+|.... +-...++...+.+. +++++ +|++.|.+-.
T Consensus 166 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~-A~kV~v~N~~ 219 (332)
T 2ppv_A 166 EPMNEAIEALEQ--ADLIVLGPGSLYTSVISNLCVKGISEA-LLRTS-APKLYVSNVM 219 (332)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCC-SCEEEECCSB
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCC-CCEEEEcCCC
Confidence 346678888888 99999997642 22333445566665 56688 9999887643
No 166
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=41.59 E-value=32 Score=26.46 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+....++..++ +|+||+|.... +-...++...+.+. +++++ +|++.|.+-.
T Consensus 167 ~~~p~~l~AI~~--AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~-A~kV~v~Nl~ 220 (323)
T 2o2z_A 167 KPLREGLEAIRK--ADVIVIGPGSLYTSVLPNLLVPGICEA-IKQST-ARKVYICNVM 220 (323)
T ss_dssp CCCHHHHHHHHH--CSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCC-SEEEEECCSB
T ss_pred CCCHHHHHHHHh--CCEEEECCCCCHHHhcccccCchHHHH-HHhCC-CCEEEEcCCC
Confidence 356778888888 99999997642 22334556667676 46688 9999887653
No 167
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=41.22 E-value=93 Score=22.01 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
++++|++.+...|..++.++.+. +.+++.+|+...
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 68999999999888887777554 357888888654
No 168
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=41.10 E-value=59 Score=19.74 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+..+ .++..+...+|+|++...-.+. .++ ...+.+-...+ +|++++-..
T Consensus 33 ~~~~~-al~~~~~~~~dlii~D~~~p~~-~g~---~~~~~lr~~~~-~~ii~~t~~ 82 (120)
T 3f6p_A 33 HDGNE-AVEMVEELQPDLILLDIMLPNK-DGV---EVCREVRKKYD-MPIIMLTAK 82 (120)
T ss_dssp SSHHH-HHHHHHTTCCSEEEEETTSTTT-HHH---HHHHHHHTTCC-SCEEEEEES
T ss_pred CCHHH-HHHHHhhCCCCEEEEeCCCCCC-CHH---HHHHHHHhcCC-CCEEEEECC
Confidence 34443 4455666789999998663321 111 23444544455 888877543
No 169
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=40.42 E-value=1.1e+02 Score=22.76 Aligned_cols=52 Identities=6% Similarity=-0.074 Sum_probs=33.4
Q ss_pred ChHHH--HHHHHHHcCCcEEEEeeCCCCC-cc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 117 DAAKV--ICKEAERLKPAAVVIGSRGRGL-IQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~--I~~~a~~~~~dliV~G~~~~~~-~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++ +.+.|++.++|-+++-...... .. +-+.. --+.|+..++ .||++...
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~-~f~~va~a~~-lPiilYn~ 131 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVK-YFKTLCEVSP-HPVYLYNY 131 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHH-HHHHHHHHCS-SCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHH-HHHHHHhhCC-CCEEEEEC
Confidence 44444 4567888999999888765544 22 22222 2256778888 99998753
No 170
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.40 E-value=50 Score=27.60 Aligned_cols=69 Identities=9% Similarity=0.002 Sum_probs=42.9
Q ss_pred HHHHHhhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 97 LAIEAMDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+....+...|.++. .+. .-+.+.|++.+++.++|+|.++......... +..+.+.+-+...++||++--
T Consensus 117 iva~~L~~~G~eVi--~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~--m~~~i~~Lr~~g~~i~ViVGG 186 (579)
T 3bul_A 117 IVGVVLQCNNYEIV--DLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDE--MVNVAKEMERQGFTIPLLIGG 186 (579)
T ss_dssp HHHHHHHTTTCEEE--ECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHH--HHHHHHHHHHTTCCSCEEEES
T ss_pred HHHHHHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHH--HHHHHHHHHHcCCCCeEEEEc
Confidence 34455666677653 233 3689999999999999999998764222211 233445444433338887753
No 171
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=40.29 E-value=1.3e+02 Score=23.38 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHH
Q 030298 50 HGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER 128 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~ 128 (179)
....+++.+++|.++|...+ .+++++|=..... .......+..++..++ +..++.++..+ ..+..-.++..-
T Consensus 155 T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk--~sdglf~~~~~eva~~--eyp~i~~~~~~-vD~~~~qlv~~P-- 227 (349)
T 3blx_A 155 TRPKTERIARFAFDFAKKYNRKSVTAVHKANIMK--LGDGLFRNIITEIGQK--EYPDIDVSSII-VDNASMQAVAKP-- 227 (349)
T ss_dssp EHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTST--THHHHHHHHHHHHHHH--HCTTSEEEEEE-HHHHHHHHHHCG--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccch--hhHHHHHHHHHHHHHh--hCCCeeEEEee-HHHHHHHHhhCc--
Confidence 34667899999999998874 5788887543321 1222333444443211 33456666543 334444444433
Q ss_pred cCCcEEEEe
Q 030298 129 LKPAAVVIG 137 (179)
Q Consensus 129 ~~~dliV~G 137 (179)
.++|.||..
T Consensus 228 ~~FDVivt~ 236 (349)
T 3blx_A 228 HQFDVLVTP 236 (349)
T ss_dssp GGCSEEEEC
T ss_pred ccccEEEEC
Confidence 348877765
No 172
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=40.24 E-value=66 Score=20.02 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=28.4
Q ss_pred hhhcCceeEEEEec-CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 102 MDVAMVRTKARIVE-GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 102 ~~~~~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++..++++++.... ++.... . .++|+|+.+..-..... -.+......+ +||+++.+
T Consensus 28 ~~~~gi~~~i~~~~~~~~~~~----~--~~~D~Ii~t~~l~~~~~------~~~~~~~~~~-~pv~~I~~ 84 (109)
T 2l2q_A 28 AKSKNINATIEAIAETRLSEV----V--DRFDVVLLAPQSRFNKK------RLEEITKPKG-IPIEIINT 84 (109)
T ss_dssp HHHHTCSEEEEEECSTTHHHH----T--TTCSEEEECSCCSSHHH------HHHHHHHHHT-CCEEECCH
T ss_pred HHHCCCCeEEEEecHHHHHhh----c--CCCCEEEECCccHHHHH------HHHHHhcccC-CCEEEECh
Confidence 34446665543333 333322 2 45999998865322111 1133334456 88887764
No 173
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=39.54 E-value=1.4e+02 Score=23.69 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred CeEEEE-ecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 42 RDILIA-VDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 42 ~~Ilv~-vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
+.|++. ..++-.+..+...|..++...|.++.++-+...... . .+ .+.. .....++.+...-...++.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~-a-~~----ql~~----~~~~~~l~v~~~~~~~dp~~ 170 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA-A-IK----QLET----LAEQVGVDFFPSDVGQKPVD 170 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT-H-HH----HHHH----HHHHHTCEECCCCSSSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc-H-HH----HHHh----hcccCCeeEEeCCCCCCHHH
Confidence 445443 234455667788887777654777777765432211 1 11 1111 12223444321101113433
Q ss_pred ---HHHHHHHHcCCcEEEEeeCCCCC
Q 030298 121 ---VICKEAERLKPAAVVIGSRGRGL 143 (179)
Q Consensus 121 ---~I~~~a~~~~~dliV~G~~~~~~ 143 (179)
..++.++..++|+|++.+.++..
T Consensus 171 i~~~~l~~~~~~~~D~VIIDTpG~l~ 196 (433)
T 2xxa_A 171 IVNAALKEAKLKFYDVLLVDTAGRLH 196 (433)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCCT
T ss_pred HHHHHHHHHHhCCCCEEEEECCCccc
Confidence 34455555689999999876543
No 174
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=39.14 E-value=63 Score=19.46 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhc--CCCCcEEEE
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHH--CKTAPIIVV 168 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~--~~~~pVlvv 168 (179)
.++..+...+|++++...-.+....+ ...+.+-+. .+++|++++
T Consensus 41 a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 41 SVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 33444556788888886532011111 234444443 233888887
No 175
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=38.59 E-value=89 Score=24.46 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHhccC-------------CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCCh
Q 030298 52 PNSKHAFDWALIHLCRL-------------ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDA 118 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~-------------~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 118 (179)
..+++..++|.++|... ..+++++|=.... ......+.+..++..+...+.+++.++..+ ..+.
T Consensus 162 ~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl--~~s~glf~~~~~ev~~~a~eypdV~~~~~~-VD~~ 238 (366)
T 3ty4_A 162 EASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVM--SVTDGLFRESCRHAQSLDPSYASINVDEQI-VDSM 238 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTC--TTHHHHHHHHHHHHGGGCGGGTTSEEEEEE-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcch--HhHHHHHHHHHHHHHHhHhhCCCceEEeee-HHHH
Confidence 56788889999998876 4578888753322 111223333333321001234457766443 3444
Q ss_pred HHHHHHHHHHcCCcEEEEe
Q 030298 119 AKVICKEAERLKPAAVVIG 137 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G 137 (179)
.-.++..= .++|.||..
T Consensus 239 am~lv~~P--~~FDViVt~ 255 (366)
T 3ty4_A 239 VYRLFREP--ECFDVVVAP 255 (366)
T ss_dssp HHHHHHCG--GGCSEEEEC
T ss_pred HHHHHhCc--ccCcEEEEC
Confidence 44444433 348877765
No 176
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=38.48 E-value=1.1e+02 Score=21.97 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=20.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
..++.++.|... ++.+++++...+..+..+++
T Consensus 12 ~~~lilAlD~~~-----~~~a~~~v~~~~~~v~~~Kv 43 (228)
T 3m47_A 12 MNRLILAMDLMN-----RDDALRVTGEVREYIDTVKI 43 (228)
T ss_dssp GGGEEEECCCCS-----HHHHHHHHHTTTTTCSEEEE
T ss_pred CCCeEEEeCCCC-----HHHHHHHHHHcCCcccEEEE
Confidence 367999999876 34455555555555556666
No 177
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=38.46 E-value=1.2e+02 Score=22.53 Aligned_cols=52 Identities=12% Similarity=-0.044 Sum_probs=33.4
Q ss_pred ChHHH--HHHHHHHcCCcEEEEeeCCCCC-cc-ccccCchhHHHHhcCCCCcEEEEcC
Q 030298 117 DAAKV--ICKEAERLKPAAVVIGSRGRGL-IQ-SVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~--I~~~a~~~~~dliV~G~~~~~~-~~-~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++ +.+.|++.++|-+++-...... .. .-+.. --..|...++ .|+++...
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~-~f~~va~a~~-lPiilYn~ 131 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAK-YYEEIARISS-HSLYIYNY 131 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHH-HHHHHHHHCC-SCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHH-HHHHHHHhcC-CCEEEEEC
Confidence 44444 4577888999999888765543 22 22222 2245778888 99998753
No 178
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=38.43 E-value=70 Score=21.13 Aligned_cols=102 Identities=7% Similarity=-0.016 Sum_probs=55.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceeEEEEecC--C
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEG--D 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~g--~ 117 (179)
++|-+-+.+... ..++.+|.++...+ |-++. ... . ....++. .|++++... .+ .
T Consensus 4 ~~ialsv~D~dK-~~~v~~a~~~~~ll~Gf~l~-----AT~---g------------Ta~~L~e~~Gl~v~~v~-k~~~e 61 (134)
T 2xw6_A 4 RALALIAHDAKK-EEMVAFCQRHREVLARFPLV-----ATG---T------------TGRRIEEATGLTVEKLL-SGPLG 61 (134)
T ss_dssp CEEEEEECGGGH-HHHHHHHHHTHHHHTTSCEE-----ECH---H------------HHHHHHHHHCCCCEECS-CGGGT
T ss_pred cEEEEEEecccH-HHHHHHHHHHHHHhCCCEEE-----Ecc---H------------HHHHHHHhhCceEEEEE-ecCCC
Confidence 567666655544 55678887777653 32222 110 0 1111122 478887543 32 2
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
-...|.+..++.++|+||--....+.-.+.--|....+..-... +|++
T Consensus 62 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~-IP~~ 109 (134)
T 2xw6_A 62 GDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHG-VPLA 109 (134)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHT-CCEE
T ss_pred CcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcC-CCeE
Confidence 34589999999999999998772221111112334444444445 6654
No 179
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=38.26 E-value=1.2e+02 Score=22.65 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=53.5
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHH--HHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKV--ICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--I~~~a~~ 128 (179)
-...+++.-+++....|. ..+.+.....+. ...++..+.++...+.. . ..+.+-.-+-..+..++ +.+.|++
T Consensus 29 iD~~~l~~lv~~li~~Gv--~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~-~-grvpViaGvg~~~t~~ai~la~~A~~ 104 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGI--DGLYVGGSTGEAFVQSLSEREQVLEIVAEEA-K-GKIKLIAHVGCVSTAESQQLAASAKR 104 (303)
T ss_dssp BCHHHHHHHHHHHHHTTC--SEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-T-TTSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECeeccChhhCCHHHHHHHHHHHHHHh-C-CCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 345555555555444443 334444433322 22333444444433332 2 12343222211244444 4577889
Q ss_pred cCCcEEEEeeCCCCCccc-cccCchhHHHHhcCCCCcEEEEc
Q 030298 129 LKPAAVVIGSRGRGLIQS-VLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~~-~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.++|-+++-........+ -++ .--+.|...+++.||++..
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHC-DHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEecCCCCCCCCHHHHH-HHHHHHHHhCCCCCEEEEe
Confidence 999998888765433222 121 1123455544337888864
No 180
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=38.18 E-value=74 Score=26.26 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.+.+..|.+.++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 412 ia~aa~~~A~~l~a~aIv~~T~s---------G~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 412 IACSAVESAHDVNAKLIITITET---------GNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 34566677889999988877663 7889999987777999998664
No 181
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=38.14 E-value=77 Score=20.18 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+..++ ++..+...+|+|++...-.+ ...+ ...+.+-...+++|++++-..
T Consensus 45 ~~~~~a-~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 45 RDATQA-LQLLASREVDLVISAAHLPQ-MDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp SSHHHH-HHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred CCHHHH-HHHHHcCCCCEEEEeCCCCc-CcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 344333 34445667888888865322 1111 233444444444788777553
No 182
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=37.81 E-value=1.2e+02 Score=23.64 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcCC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLKP 131 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 131 (179)
..+++.+++|.++|+....+++++|=..... ....+.+..++.. .+..++.++..+ ..+..-.++..- .++
T Consensus 163 ~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk---~~~lf~~~~~eva---~eypdI~~~~~~-VD~~~mqlv~~P--~~F 233 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRRKHVVSVDKANVLE---VGEFWRKTVEEVG---RGYPDVALEHQY-VDAMAMHLVRSP--ARF 233 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---HHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHCG--GGC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcccc---ccHHHHHHHHHHH---HHCCcEEEEeeE-HHHHHHHHhhCc--ccc
Confidence 5678899999999988877888887543321 2223333333322 233456666443 334444444433 448
Q ss_pred cEEEEee
Q 030298 132 AAVVIGS 138 (179)
Q Consensus 132 dliV~G~ 138 (179)
|.||...
T Consensus 234 DVivt~N 240 (359)
T 2y3z_A 234 DVVVTGN 240 (359)
T ss_dssp SEEEECH
T ss_pred cEEEEcC
Confidence 8777653
No 183
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=37.77 E-value=56 Score=22.50 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=4.8
Q ss_pred CcEEEEcCC
Q 030298 163 APIIVVPGK 171 (179)
Q Consensus 163 ~pVlvv~~~ 171 (179)
+|+++|+..
T Consensus 64 ~pv~~v~GN 72 (228)
T 1uf3_A 64 LPTAYVPGP 72 (228)
T ss_dssp SCEEEECCT
T ss_pred CcEEEECCC
Confidence 555555544
No 184
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=37.62 E-value=1.3e+02 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=22.5
Q ss_pred CceeEEEEecC-C--hHHHHHHHHHHcCCcEEEEeeC
Q 030298 106 MVRTKARIVEG-D--AAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 106 ~~~~~~~~~~g-~--~~~~I~~~a~~~~~dliV~G~~ 139 (179)
++.+.+.+..+ + -...+.+.+.+.++|.|++..+
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 45655554333 1 2456678888999999998754
No 185
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.54 E-value=62 Score=24.39 Aligned_cols=94 Identities=7% Similarity=-0.051 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCc-eeEEEEecC---ChHHHHHHHHHHc
Q 030298 54 SKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMV-RTKARIVEG---DAAKVICKEAERL 129 (179)
Q Consensus 54 s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~g---~~~~~I~~~a~~~ 129 (179)
...++++.++++...+.++.++-..... . +. ..+.+ .+.+...|. .++...... -....+.+..++
T Consensus 41 ~~~i~~~~v~lagg~~~~I~~IptAs~~--~---~~---~~~~~-~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~- 110 (291)
T 3en0_A 41 GREILQTFWSRSGGNDAIIGIIPSASRE--P---LL---IGERY-QTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQ- 110 (291)
T ss_dssp CCHHHHHHHHHTTGGGCEEEEECTTCSS--H---HH---HHHHH-HHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHH-
T ss_pred hHHHHHHHHHHcCCCCCeEEEEeCCCCC--h---HH---HHHHH-HHHHHHcCCCeeEEEEecCccccCCHHHHHHHhc-
Confidence 4578888889987555555554322211 1 11 11121 233444466 444332211 123466777777
Q ss_pred CCcEEEEeeCCCCCccccccCchhHHHHh
Q 030298 130 KPAAVVIGSRGRGLIQSVLQGSVGEYCLH 158 (179)
Q Consensus 130 ~~dliV~G~~~~~~~~~~~~gs~~~~ll~ 158 (179)
+|.|.++-.....+.+.+.++-..++++
T Consensus 111 -ad~I~v~GGnt~~l~~~l~~t~l~~~L~ 138 (291)
T 3en0_A 111 -CTGIFMTGGDQLRLCGLLADTPLMDRIR 138 (291)
T ss_dssp -CSEEEECCSCHHHHHHHHTTCHHHHHHH
T ss_pred -CCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 9999999655444555555554455544
No 186
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=37.00 E-value=1.1e+02 Score=21.70 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=52.5
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC--C--
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--D-- 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~-- 117 (179)
++|+|-+.++.....++-.++.- ...++++ +.|........ ..+..+..|+++....... +
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l~~-~~~~~~i--~~Vvs~~~~~~------------~~~~A~~~gIp~~~~~~~~~~~r~ 66 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIES-GKVNASI--ELVISDNPKAY------------AIERCKKHNVECKVIQRKEFPSKK 66 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHT-TSSCEEE--EEEEESCTTCH------------HHHHHHHHTCCEEECCGGGSSSHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHh-CCCCCeE--EEEEeCCCChH------------HHHHHHHcCCCEEEeCcccccchh
Confidence 57888888886543333323221 1122244 44433321111 1122344567764321111 1
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-.+.+++..++.++|++|+...++ + ....++...+ ..++=+++
T Consensus 67 ~~~~~~~~~l~~~~~Dliv~a~y~~-----i----l~~~~l~~~~-~~~iNiHp 110 (216)
T 2ywr_A 67 EFEERMALELKKKGVELVVLAGFMR-----I----LSHNFLKYFP-NKVINIHP 110 (216)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCCS-----C----CCHHHHTTST-TCEEEEES
T ss_pred hhhHHHHHHHHhcCCCEEEEeCchh-----h----CCHHHHhhcc-CCeEEEcC
Confidence 136788888999999999986642 1 1244555555 55555544
No 187
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=36.92 E-value=1.3e+02 Score=22.36 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=34.2
Q ss_pred cCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCC---CccccccCchhH-HHHhcCCCCcEEEEcCCC
Q 030298 105 AMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRG---LIQSVLQGSVGE-YCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 105 ~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~---~~~~~~~gs~~~-~ll~~~~~~pVlvv~~~~ 172 (179)
.|+++... ..+....++ . .+|.+++|+.+-. ..... .|+..- .++++.. +|++++-+..
T Consensus 159 ~gI~vtli--~dsa~~~~m---~--~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~-vp~~V~a~~~ 221 (276)
T 1vb5_A 159 SGIEFEVI--TDAQMGLFC---R--EASIAIVGADMITKDGYVVNK-AGTYLLALACHENA-IPFYVAAETY 221 (276)
T ss_dssp TTCCEEEE--CGGGHHHHH---T--TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTT-CCEEEECCGG
T ss_pred CCCCEEEE--cHHHHHHHH---c--cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcC-CCEEEecccc
Confidence 57776532 233333333 2 5999999998632 23223 455443 3445666 9999986543
No 188
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=36.80 E-value=1.3e+02 Score=22.62 Aligned_cols=110 Identities=9% Similarity=0.005 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCchh--hHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQNQ--IVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
-...+++.-+++....| +..+.+.....+. ...++..+.++...+... ..+.+-.-+- .+..+ .+.+.|++
T Consensus 30 iD~~~l~~lv~~li~~G--v~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~--grvpViaGvg-~~t~~ai~la~~A~~ 104 (316)
T 3e96_A 30 IDWHHYKETVDRIVDNG--IDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH--GRALVVAGIG-YATSTAIELGNAAKA 104 (316)
T ss_dssp BCHHHHHHHHHHHHTTT--CCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSEEEEEEC-SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--CCEEEeCccccCcccCCHHHHHHHHHHHHHHhC--CCCcEEEEeC-cCHHHHHHHHHHHHh
Confidence 34555665555554444 3344443332221 223333444444333322 2344443332 24444 34566889
Q ss_pred cCCcEEEEeeCCCCCcc-ccccCchhHHHHhcCCCCcEEEEc
Q 030298 129 LKPAAVVIGSRGRGLIQ-SVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 129 ~~~dliV~G~~~~~~~~-~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.++|-+++......... +-++ .--+.|+..++ .||++..
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~-~~f~~va~a~~-lPiilYn 144 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVY-AYFRDIIEALD-FPSLVYF 144 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHH-HHHHHHHHHHT-SCEEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhCC-CCEEEEe
Confidence 99999999865443322 2222 22356777788 9999986
No 189
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=36.50 E-value=1.3e+02 Score=22.22 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
.+.|.+..++.+.|+|+.-....+-..+...+..+....+..+ +|+++.
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~-~~~~~~ 185 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKN-VPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHT-CCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcC-CCEEEe
Confidence 3456677889999999986443333344555666666677777 777665
No 190
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=36.49 E-value=79 Score=19.83 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (179)
.+..+ .++..+...+|+|++...-.+ ...+ ...+.+-. ..+++|++++-..
T Consensus 39 ~~~~~-a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 39 GNAIE-AVPVAVKTHPHLIITEANMPK-ISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp SSHHH-HHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCHHH-HHHHHHcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 34433 345555667999999866322 1111 23454544 2333888888554
No 191
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=36.29 E-value=41 Score=25.87 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCC--CCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGR--GLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~--~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+....++..++ +|+||+|.... +-...++...+.+. +++++ +|++.|.+
T Consensus 174 a~p~al~AI~~--AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~-A~kV~v~N 224 (326)
T 2q7x_A 174 ASRRVVQTILE--SDMIVLGPGSLFTSILPNIVIXEIGRA-LLETX-AEIAYVCN 224 (326)
T ss_dssp BCSHHHHHHHH--CSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCS-SEEEEECC
T ss_pred CCHHHHHHHHh--CCEEEECCCCCHHHHhhhhhhccHHHH-HHhcc-CceEEecc
Confidence 45567777777 99999997642 22344455666665 56788 99998876
No 192
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=36.14 E-value=1.3e+02 Score=23.53 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=44.9
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
...+++.+++|.++|+....+++++|=..... ....+.+..++.. .+..++.++..+ ..+..-.++..= .+
T Consensus 169 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk---~~~lf~~~~~eva---~eypdI~~~~~~-vD~~~m~lv~~P--~~ 239 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRRRKVTSIDKANVLQ---SSILWREIVNDVA---KTYPDVELAHMY-IDNATMQLIKDP--SQ 239 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---HHHHHHHHHHHHH---TTCTTSEEEEEE-HHHHHHHHHHCG--GG
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCcccc---cchhHHHHHHHHH---HHCCCceEeeee-HHHHHHHHhhCc--cc
Confidence 46678999999999988777888888544321 1223333333322 233456666433 334444444443 34
Q ss_pred CcEEEEe
Q 030298 131 PAAVVIG 137 (179)
Q Consensus 131 ~dliV~G 137 (179)
+|.||..
T Consensus 240 FDVivt~ 246 (363)
T 1cnz_A 240 FDVLLCS 246 (363)
T ss_dssp CSEEEEC
T ss_pred ceEEEEC
Confidence 8877765
No 193
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=36.13 E-value=1.3e+02 Score=23.88 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
...+++.+++|.++|.....+++++|=.... .. ...+.+..++. ..+.++++++..+ ..+..-.++.. -.+
T Consensus 206 r~~~eRIar~AFe~A~~rrkkVT~v~KaNVl--k~-sglf~~~~~ev---a~eYPdV~~~~~~-VD~~amqLV~~--P~~ 276 (405)
T 3r8w_A 206 AHEIDRIARVAFETARKRRGKLCSVDKANVL--EA-SILWRKRVTAL---ASEYPDVELSHMY-VDNAAMQLVRD--PKQ 276 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTC--HH-HHHHHHHHHHH---GGGSTTSEEEEEE-HHHHHHHHHHC--GGG
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEECchhh--cc-ccHHHHHHHHH---HhHCCCCeEEeee-HHHHHHHHHhC--hhh
Confidence 3567888999999998777788888743322 11 12333333322 2234466666443 33444444443 344
Q ss_pred CcEEEEe
Q 030298 131 PAAVVIG 137 (179)
Q Consensus 131 ~dliV~G 137 (179)
+|.||..
T Consensus 277 FDViVt~ 283 (405)
T 3r8w_A 277 FDTIVTN 283 (405)
T ss_dssp CSEEEEC
T ss_pred CcEEeec
Confidence 8877765
No 194
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=36.04 E-value=83 Score=25.86 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.+.+..|.+.++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 397 ia~aa~~~A~~l~a~aIv~~T~S---------G~tA~~iSr~RP~~PIia~T~~ 441 (511)
T 3gg8_A 397 VARAAVETAECVNAAIILALTET---------GQTARLIAKYRPMQPILALSAS 441 (511)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 34455667788899988887663 7888988887777999998654
No 195
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=35.59 E-value=80 Score=19.64 Aligned_cols=46 Identities=11% Similarity=-0.058 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++..+...+|+|++.. -. ....+ .....+-...+++|++++-..
T Consensus 39 ~a~~~l~~~~~dlvi~d~-~~-~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 39 EAFTFLRREKIDLVFVDV-FE-GEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHTTSCCSEEEEEC-TT-THHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHhccCCCEEEEeC-CC-CCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 344555567789998886 32 21111 233444443434888887543
No 196
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=35.46 E-value=98 Score=20.99 Aligned_cols=39 Identities=8% Similarity=-0.096 Sum_probs=23.2
Q ss_pred HHhhhcCceeEEEEecCChHHHHHHH----HHHcCCcEEEEee
Q 030298 100 EAMDVAMVRTKARIVEGDAAKVICKE----AERLKPAAVVIGS 138 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~g~~~~~I~~~----a~~~~~dliV~G~ 138 (179)
+.+...|.++......+|-.+.|.+. ....++|+||..-
T Consensus 47 ~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 47 QLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 34455678777666666654444433 3345688888763
No 197
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=35.44 E-value=38 Score=24.13 Aligned_cols=36 Identities=11% Similarity=-0.083 Sum_probs=26.7
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
.++|++++.++..+..+.+.+..|.+..|.+++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 379999999999888888877776552577777764
No 198
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=35.27 E-value=80 Score=19.57 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (179)
+..++..+...+|+|++...-.+ ...+ ...+.+-+ ..+++|++++-..
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEecC
Confidence 34445566778999999876322 1111 23344443 2233888888653
No 199
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=35.24 E-value=75 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.+.+....|.+.++..||.-+.. |.++..+.+.-|.||++.+-+..
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~~ 427 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLSTS---------GTTPRLVSKYRPNCPIILVTRCP 427 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSS---------SHHHHHHHHTCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCCH
Confidence 34455566778888888776553 78889888877779999987654
No 200
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=35.11 E-value=1.3e+02 Score=23.39 Aligned_cols=80 Identities=8% Similarity=0.088 Sum_probs=44.0
Q ss_pred CCcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHH
Q 030298 50 HGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER 128 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~ 128 (179)
-...+++.+++|.++|... ..+++++|=..... .......+..++.. .+..++.++..+ ..+..-.++..-
T Consensus 161 T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk--~sdglf~~~~~eva---~eypdI~~~~~~-vD~~~m~lv~~P-- 232 (354)
T 3blx_B 161 TRDASERVIRYAFEYARAIGRPRVIVVHKSTIQR--LADGLFVNVAKELS---KEYPDLTLETEL-IDNSVLKVVTNP-- 232 (354)
T ss_dssp EHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTC--HHHHHHHHHHHHHG---GGCTTSEEEEEE-HHHHHHHHHHCG--
T ss_pred cHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchH--hHHHHHHHHHHHHH---HHCCCceEEEEE-HHHHHHHHhhCh--
Confidence 3466788999999999887 45788887544321 11223333333322 233456666443 233344444433
Q ss_pred cCCc--EEEEe
Q 030298 129 LKPA--AVVIG 137 (179)
Q Consensus 129 ~~~d--liV~G 137 (179)
.++| .||..
T Consensus 233 ~~FD~~Vivt~ 243 (354)
T 3blx_B 233 SAYTDAVSVCP 243 (354)
T ss_dssp GGGTTEEEEEC
T ss_pred hhCCceEEEec
Confidence 3477 77665
No 201
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.06 E-value=80 Score=19.49 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=23.8
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++..+...+|++++...-.+ ..++ ...+.+-+..+++|++++-..
T Consensus 41 al~~~~~~~~dlvilD~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 41 AMKLIEEYNPNVVILDIEMPG-MTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 344455567888888765322 1111 233444443333788777543
No 202
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=35.02 E-value=45 Score=24.41 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
...+++...+.++|+|.+|-+..-.....+ ...+++- ... +|+++.+.-
T Consensus 22 t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~--~~v~~ir-~~~-~Pivlm~y~ 70 (240)
T 1viz_A 22 PDEQLEILCESGTDAVIIGGSDGVTEDNVL--RMMSKVR-RFL-VPCVLEVSA 70 (240)
T ss_dssp CHHHHHHHHTSCCSEEEECC----CHHHHH--HHHHHHT-TSS-SCEEEECSC
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHhh-CcC-CCEEEecCc
Confidence 345677788889999999974222222221 3344443 356 899887654
No 203
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=35.01 E-value=81 Score=19.56 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGKE 172 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~~ 172 (179)
+..++..+...+|+|++...-.+ ...+ ...+.+-+ ..+++|++++-...
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEECCC
Confidence 34445566677899999866322 1111 23444544 23338888885543
No 204
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=34.97 E-value=90 Score=25.71 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+.+..+.|...++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 407 a~aa~~~A~~l~a~aIv~~T~S---------G~TA~~vSr~RP~~PIia~T~~ 450 (520)
T 3khd_A 407 ARSAVETAESIQASLIIALTET---------GYTARLIAKYKPSCTILALSAS 450 (520)
T ss_dssp HHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEEcCC
Confidence 4455566788899988887663 7889989888777999998654
No 205
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=34.81 E-value=1.7e+02 Score=23.29 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
.+.++|+|++.+.-.|..++.++.+ .|..++.+++.-.
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 3558999999999888877766633 3678888888654
No 206
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=34.72 E-value=1.4e+02 Score=23.18 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=44.3
Q ss_pred CcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 51 GPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
...+++.+++|.++|.....+++++|=..... ....+.+..++. ..+..++.++..+ ..+..-.++..= .+
T Consensus 164 ~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk---~~~lf~~~~~ev---a~eypdI~~~~~~-vD~~~mqlv~~P--~~ 234 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE---TTRLWREVVTEV---ARDYPDVRLSHMY-VDNAAMQLIRAP--AQ 234 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH---HHHHHHHHHHHH---GGGCTTSEEEEEE-HHHHHHHHHHCG--GG
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCcccc---cchhHHHHHHHH---HHHCCCceEEeee-HHHHHHHHHhCC--Cc
Confidence 36678899999999988777888887544321 122223333322 1233456666433 334444444443 34
Q ss_pred CcEEEEe
Q 030298 131 PAAVVIG 137 (179)
Q Consensus 131 ~dliV~G 137 (179)
+|.||..
T Consensus 235 FDVivt~ 241 (358)
T 1a05_A 235 FDVLLTG 241 (358)
T ss_dssp CSEEEEC
T ss_pred ccEEEec
Confidence 8877765
No 207
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=34.62 E-value=38 Score=24.90 Aligned_cols=37 Identities=19% Similarity=0.015 Sum_probs=22.7
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
....+.++.+.+-.|=-.+. +..+.+.++|.+|+|+.
T Consensus 189 ~~~~~~~~~I~VDGGI~~~t-i~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 189 ISSTDRDILLEIDGGVNPYN-IAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHTSCCEEEEESSCCTTT-HHHHHTTTCCEEEESHH
T ss_pred HHhcCCCeeEEEECCcCHHH-HHHHHHcCCCEEEEehH
Confidence 33345566655555522333 44566789999999964
No 208
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=34.43 E-value=92 Score=19.97 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=5.6
Q ss_pred CCcEEEEeeC
Q 030298 130 KPAAVVIGSR 139 (179)
Q Consensus 130 ~~dliV~G~~ 139 (179)
.+|+|++...
T Consensus 83 ~~dliilD~~ 92 (157)
T 3hzh_A 83 NIDIVTLXIT 92 (157)
T ss_dssp GCCEEEECSS
T ss_pred CCCEEEEecc
Confidence 4566666544
No 209
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=34.25 E-value=93 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+.+..+.|.+.++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 382 a~aa~~~A~~l~a~aIv~~T~S---------G~tA~~isr~RP~~pIia~T~~ 425 (499)
T 3hqn_D 382 CSSAVNSVYETKAKAMVVLSNT---------GRSARLVAKYRPNCPIVCVTTR 425 (499)
T ss_dssp HHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCC
Confidence 4455566778889988887663 7889989888777999998654
No 210
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=34.13 E-value=1.8e+02 Score=23.25 Aligned_cols=62 Identities=15% Similarity=0.307 Sum_probs=35.0
Q ss_pred HhhhcCceeEEEEecCCh----HHHHHHHHHHcCCcEEE-EeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 101 AMDVAMVRTKARIVEGDA----AKVICKEAERLKPAAVV-IGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 101 ~~~~~~~~~~~~~~~g~~----~~~I~~~a~~~~~dliV-~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
.++..++++.+.+..|++ .+.+.+.+++ ++|+|| +|-.. ...++..+..... +|++.||=..
T Consensus 113 ~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS--------viD~AK~iA~~~g-iP~I~IPTTA 179 (450)
T 1ta9_A 113 SLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK--------TMDSAKYIAHSMN-LPSIICPTTA 179 (450)
T ss_dssp HHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH--------HHHHHHHHHHHTT-CCEEEEESSC
T ss_pred HHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH--------HHHHHHHHHHhcC-CCEEEEeCCC
Confidence 344456666444556653 3344444556 788777 55221 1344555555567 8999887543
No 211
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=33.73 E-value=1e+02 Score=20.44 Aligned_cols=51 Identities=16% Similarity=0.003 Sum_probs=28.0
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+..++ ++......+|+|++...-.+ ..++ ...+.+-...+++||+++-..
T Consensus 38 ~~~~~a-l~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 38 HNKDEA-LKLAGAEKFEFITVXLHLGN-DSGL---SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp CSHHHH-HHHHTTSCCSEEEECSEETT-EESH---HHHHHHHHHCTTCEEEEEESS
T ss_pred CCHHHH-HHHHhhCCCCEEEEeccCCC-ccHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 444444 44556677899998865321 1111 234444444444888887654
No 212
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=33.69 E-value=89 Score=24.58 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=29.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
++|+++.|++.....|...+.......+.++.++..
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~l 323 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYL 323 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 799999999998888888887777777777777654
No 213
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=33.53 E-value=1.4e+02 Score=21.68 Aligned_cols=49 Identities=10% Similarity=-0.025 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHH--cCCcEEEEeeC
Q 030298 89 MSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAER--LKPAAVVIGSR 139 (179)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~ 139 (179)
...+.++++ .+.....+..+.+.+-.|=-.+.+. .+.+ .++|.+|+|+.
T Consensus 169 ~~l~ki~~l-r~~~~~~~~~~~I~vdGGI~~~~~~-~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 169 LILDRVIQV-EKRLGNRRVEKLINIDGSMTLELAK-YFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHH-HHHHGGGGGGCEEEEESSCCHHHHH-HHHHSSSCCCCEEECGG
T ss_pred hHHHHHHHH-HHHHHhcCCCceEEEECCcCHHHHH-HHHHhCCCCcEEEEeeH
Confidence 334444443 3333334445554444443344444 4556 79999999976
No 214
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=33.49 E-value=48 Score=17.30 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=17.6
Q ss_pred eEEEEecC-ChHHHHHHHHHHcCCcE
Q 030298 109 TKARIVEG-DAAKVICKEAERLKPAA 133 (179)
Q Consensus 109 ~~~~~~~g-~~~~~I~~~a~~~~~dl 133 (179)
+..++... +..+.|+.||++.+.|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 44455554 67888999998877763
No 215
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=33.39 E-value=1.1e+02 Score=21.32 Aligned_cols=102 Identities=8% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhh-cCceeEEEEecC-
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDV-AMVRTKARIVEG- 116 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~g- 116 (179)
...+|++-+.+... ..++.+|.++...+ |-++. ... . ....++. .|++++.. ..+
T Consensus 26 ~~g~V~lsv~D~dK-~~lv~~ak~~~~lL~Gf~L~-----AT~---g------------Ta~~L~e~~Gl~v~~v-~k~~ 83 (178)
T 1vmd_A 26 KKKRIALIAHDRRK-RDLLEWVSFNLGTLSKHELY-----ATG---T------------TGALLQEKLGLKVHRL-KSGP 83 (178)
T ss_dssp SSCEEEEEECGGGH-HHHHHHHHHSHHHHTTSEEE-----ECH---H------------HHHHHHHHHCCCCEEC-SCGG
T ss_pred CCCEEEEEEehhhH-HHHHHHHHHHHHHhcCCEEE-----Ech---H------------HHHHHHHHhCceeEEE-eecC
Confidence 34778888876654 55788888777654 33322 110 0 1111222 57888754 333
Q ss_pred C-hHHHHHHHHHHcCCcEEEEeeC--CCCCccccccCchhHHHHhcCCCCcEE
Q 030298 117 D-AAKVICKEAERLKPAAVVIGSR--GRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 117 ~-~~~~I~~~a~~~~~dliV~G~~--~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
. ....|.+..++.++|+||--.. +..+.. --|....++.-... +|++
T Consensus 84 eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~--~D~~~IRR~A~~~~-IP~~ 133 (178)
T 1vmd_A 84 LGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHD--VDVKALIRIATVYN-IPVA 133 (178)
T ss_dssp GTHHHHHHHHHHTTSCCEEEEECCSSSCCTTS--CCHHHHHHHHHHTT-CCEE
T ss_pred CCCCchHHHHHHCCCccEEEEccCccCCCccc--ccHHHHHHHHHHcC-CCEE
Confidence 2 3458999999999999999876 322211 12334455555556 6664
No 216
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=32.93 E-value=92 Score=19.52 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++......+|++++...-.+ ..++ .+.+.+-...+.+|++++-..
T Consensus 40 ~al~~~~~~~~dlvllD~~lp~-~~g~---~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 40 NAIQIALKHPPNVLLTDVRMPR-MDGI---ELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHHHHTTSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEECCS
T ss_pred HHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 3344555566888888765322 1111 233444433333777777543
No 217
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=32.72 E-value=88 Score=25.39 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.+....|.+.++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 358 ia~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~ 402 (470)
T 1e0t_A 358 VCRGAVETAEKLDAPLIVVATQG---------GKSARAVRKYFPDATILALTTN 402 (470)
T ss_dssp HHHHHHHHHHHTTCSBEEEECSS---------SHHHHHHHTTCCSSBEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------hhHHHHHHhhCCCCCEEEECCC
Confidence 45555666788888888776553 7888988887777999998664
No 218
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=32.52 E-value=91 Score=19.35 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC--CCCcEEEEcCCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC--KTAPIIVVPGKE 172 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~--~~~pVlvv~~~~ 172 (179)
.+..++ ++..++..+|+|++...-.+ ... -...+.+-... +++|++++-...
T Consensus 33 ~~~~~a-~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 33 KNEKEA-LEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp SSHHHH-HHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred CCHHHH-HHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEecCC
Confidence 344444 44556668999999976322 111 13445555543 338998886543
No 219
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=32.45 E-value=97 Score=19.65 Aligned_cols=48 Identities=10% Similarity=-0.019 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
...++......+|+|++...-.+ ...+ .....+-...+.+|++++-..
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 88 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISGY 88 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEECG
T ss_pred HHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEecC
Confidence 34445555667899998865322 1111 234445444433888877543
No 220
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=32.42 E-value=90 Score=19.26 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 125 EAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
......+|+|++...-.+ ... -...+.+-...+++|++++-..
T Consensus 54 ~l~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 54 PPADTRPGIVILDLGGGD-LLG---KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp CCTTCCCSEEEEEEETTG-GGG---STTHHHHHGGGTTCCEEEEESC
T ss_pred HHhccCCCEEEEeCCCCC-chH---HHHHHHHHhhCCCCcEEEEeCC
Confidence 345677899998876332 121 1334555554434888887554
No 221
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=31.86 E-value=91 Score=19.17 Aligned_cols=23 Identities=9% Similarity=-0.039 Sum_probs=11.2
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
+..+++........+|+|++...
T Consensus 39 ~~~~a~~~~~~~~~~dlvi~D~~ 61 (136)
T 3hdv_A 39 GAEEARLYLHYQKRIGLMITDLR 61 (136)
T ss_dssp SHHHHHHHHHHCTTEEEEEECSC
T ss_pred CHHHHHHHHHhCCCCcEEEEecc
Confidence 33344333333333677777654
No 222
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=31.77 E-value=1.5e+02 Score=22.23 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-CC-
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GD- 117 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~- 117 (179)
..++|.|-+.++.+...++-.+.+- ...++++.+ |....+... ....+..|+++...-.. .+
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~--Visn~p~~~-------------~~~A~~~gIp~~~~~~~~~~r 151 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRV-GDLHMIPTA--IVSNHPRET-------------FSGFDFGDIPFYHFPVNKDTR 151 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHT-TSSCEEEEE--EEESSCGGG-------------SCCTTTTTCCEEECCCCTTTH
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHC-CCCCeEEEE--EEcCCChhH-------------HHHHHHcCCCEEEeCCCcccH
Confidence 3468999888887777766666432 233444444 444321110 11234557776532111 12
Q ss_pred --hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 --AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 --~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+.+++..++.++|++|+....
T Consensus 152 ~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 152 RQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 23578899999999999998764
No 223
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=31.76 E-value=1e+02 Score=19.66 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.+..+++ +.+++..+|++++...-.+ ..++ .+.+ .+++.. +||+++..
T Consensus 40 ~~g~eAl-~~~~~~~~DlvllDi~mP~-~~G~---el~~-~lr~~~-ipvI~lTa 87 (123)
T 2lpm_A 40 SRMQEAL-DIARKGQFDIAIIDVNLDG-EPSY---PVAD-ILAERN-VPFIFATG 87 (123)
T ss_dssp CCHHHHH-HHHHHCCSSEEEECSSSSS-CCSH---HHHH-HHHHTC-CSSCCBCT
T ss_pred CCHHHHH-HHHHhCCCCEEEEecCCCC-CCHH---HHHH-HHHcCC-CCEEEEec
Confidence 4444444 5667788999999876432 2221 2334 445567 99988865
No 224
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=31.65 E-value=1.8e+02 Score=23.74 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHHhccC-CCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHcC
Q 030298 52 PNSKHAFDWALIHLCRL-ADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERLK 130 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~-~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~ 130 (179)
..+++.+++|.++|... ..+++++|=..... .......+..++. ..+..++.++..+ ..+..-.++..= .+
T Consensus 165 ~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk--~sdGlfr~v~~eV---a~eYPdI~~e~~~-VD~~amqLV~~P--~~ 236 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEGRKKVHCATKSNIMK--LAEGTLKRAFEQV---AQEYPDIEAVHII-VDNAAHQLVKRP--EQ 236 (496)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTTCT--THHHHHHHHHHHH---HTTCTTSEEEEEE-HHHHHHHHHHCG--GG
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCCchh--hHHHHHHHHHHHH---HHHCCCceEEEEe-HHHHHHHHhhCc--Cc
Confidence 66789999999999987 46788887543321 1222333344432 1234456666443 334444444433 44
Q ss_pred CcEEEEee
Q 030298 131 PAAVVIGS 138 (179)
Q Consensus 131 ~dliV~G~ 138 (179)
+|.||...
T Consensus 237 FDVIVt~N 244 (496)
T 2d1c_A 237 FEVIVTTN 244 (496)
T ss_dssp CSEEEECH
T ss_pred ceEEEECC
Confidence 88777653
No 225
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=31.61 E-value=1.5e+02 Score=21.54 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=28.0
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
.+++++|++.+...|..++..+.+. .|.+++.+++...
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g~~v~av~~~~~ 62 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LKENVFALLMPTQ 62 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HTTSEEEEECCSC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cCCcEEEEEecCC
Confidence 4689999999998887766665443 2568888887543
No 226
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=30.73 E-value=2e+02 Score=22.83 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=37.2
Q ss_pred ce-eEEEEecCC---hHHHHHHHHHHcCCcEEEEeeCCCCCc--------cccccC--------chhHHHHhcC--CCCc
Q 030298 107 VR-TKARIVEGD---AAKVICKEAERLKPAAVVIGSRGRGLI--------QSVLQG--------SVGEYCLHHC--KTAP 164 (179)
Q Consensus 107 ~~-~~~~~~~g~---~~~~I~~~a~~~~~dliV~G~~~~~~~--------~~~~~g--------s~~~~ll~~~--~~~p 164 (179)
.+ +.+.+.-+- -...|.+.+.+.++|-|++..+..... ...+.| ....++.+.. . +|
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~-iP 347 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQ-IP 347 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTC-SC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCC-CC
Confidence 44 555555442 356778888899999999886543221 112223 2334555555 5 89
Q ss_pred EEEEcC
Q 030298 165 IIVVPG 170 (179)
Q Consensus 165 Vlvv~~ 170 (179)
|+.+-.
T Consensus 348 IIg~GG 353 (415)
T 3i65_A 348 IIASGG 353 (415)
T ss_dssp EEECSS
T ss_pred EEEECC
Confidence 887643
No 227
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=30.60 E-value=49 Score=23.44 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=26.9
Q ss_pred CCeEEEEecCCcchH-HHHHHHHHHhccCCCEEEEEE
Q 030298 41 GRDILIAVDHGPNSK-HAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~-~al~~a~~la~~~~~~l~~v~ 76 (179)
.++|++++.++...- .+++.+..|.+ .|.+++++-
T Consensus 7 ~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~ 42 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFV 42 (201)
T ss_dssp TCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEE
Confidence 379999999997777 77777766654 478887774
No 228
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=30.49 E-value=89 Score=18.64 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+......+|++++...-.+ ..+. ...+.+-+..+++|++++-.
T Consensus 41 ~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 41 EKYKELKPDIVTMDITMPE-MNGI---DAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp HHHHHHCCSEEEEECSCGG-GCHH---HHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHhcCCCEEEEeCCCCC-CcHH---HHHHHHHhhCCCCeEEEEeC
Confidence 3444556787777755321 1111 23344443333377777644
No 229
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=30.09 E-value=1.3e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.005 Sum_probs=26.8
Q ss_pred CeEEEEecCC---cchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 42 RDILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~s---~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
.+|++-.... ..+..+++++...+...|.++.++.+.+.
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~ 76 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL 76 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC
Confidence 4666544322 34667788888888777889988887654
No 230
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.93 E-value=1e+02 Score=19.04 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (179)
..++..+...+|+|++...-.+ ...+ ...+.+-. ..+++|++++-..
T Consensus 45 ~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 45 DAGDLLHTVKPDVVMLDLMMVG-MDGF---SICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHTCCSEEEEETTCTT-SCHH---HHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHhcCCCEEEEecccCC-CcHH---HHHHHHHhCccccCCcEEEEeCC
Confidence 3444555667888888865322 1111 23444444 2233788877543
No 231
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=29.53 E-value=1.1e+02 Score=19.33 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++..++..+|+|++...-.+ ... -...+.+-+..+.+||+++-..
T Consensus 52 ~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 52 AALELIKAHLPDVALLDYRMPG-MDG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 3344555567888888865322 111 1234445444444778777543
No 232
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=29.41 E-value=1.1e+02 Score=19.37 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++......+|+|++...-.+ ...+ ...+.+-...+++|++++-.
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 34445555667889888865322 1111 23444444443488887754
No 233
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=29.14 E-value=1.5e+02 Score=20.97 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=18.3
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
.++.+++|.... ..+++.+-.+ +..+..+++
T Consensus 6 ~~livAlD~~~~-~~a~~~~~~~----~~~~~~ikv 36 (221)
T 3exr_A 6 PNLQVALDHSNL-KGAITAAVSV----GNEVDVIEA 36 (221)
T ss_dssp CEEEEEECCSSH-HHHHHHHHHH----GGGCSEEEE
T ss_pred CCEEEEeCCCCH-HHHHHHHHhh----CCCceEEEE
Confidence 579999998763 4444544443 333445555
No 234
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.11 E-value=1e+02 Score=18.99 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=37.5
Q ss_pred CeEEE-EecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH
Q 030298 42 RDILI-AVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK 120 (179)
Q Consensus 42 ~~Ilv-~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 120 (179)
.+|++ .+|+.+-++.|+++. +..|+++.++.- +.+ +..++++. ......|.++.+.....+..+
T Consensus 51 ativvvvvddkewaekairfv----kslgaqvliiiy-dqd---------qnrleefs-revrrrgfevrtvtspddfkk 115 (134)
T 2l69_A 51 ATIVVVVVDDKEWAEKAIRFV----KSLGAQVLIIIY-DQD---------QNRLEEFS-REVRRRGFEVRTVTSPDDFKK 115 (134)
T ss_dssp CEEEEEECSSHHHHHHHHHHH----HHHCCCCEEEEE-CSC---------HHHHHHHH-HHHHHTTCCEEEESSHHHHHH
T ss_pred CeEEEEEEccHHHHHHHHHHH----HhcCCeEEEEEE-eCc---------hhHHHHHH-HHHHhcCceEEEecChHHHHH
Confidence 34554 446655555555554 555666544432 221 12333322 223445777776544456666
Q ss_pred HHHHHHHHc
Q 030298 121 VICKEAERL 129 (179)
Q Consensus 121 ~I~~~a~~~ 129 (179)
.+-++.++.
T Consensus 116 slerlirev 124 (134)
T 2l69_A 116 SLERLIREV 124 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 676766663
No 235
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=29.00 E-value=1.1e+02 Score=19.30 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 123 CKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
++..+...+|+|++...-.+ ...+ ...+.+-...+.+|++++-.
T Consensus 44 ~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (153)
T 3cz5_A 44 YRLYRETTPDIVVMDLTLPG-PGGI---EATRHIRQWDGAARILIFTM 87 (153)
T ss_dssp HHHHHTTCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCeEEEEEC
Confidence 34445556777777654321 1110 22344444333367766644
No 236
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.99 E-value=1.1e+02 Score=19.09 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (179)
.+.. ..++......+|+|++...-.+ ... -...+.+-+ ..+++|++++-..
T Consensus 38 ~~~~-~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 38 DNGA-KALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp SSHH-HHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred CCHH-HHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 3443 3445556677899999865321 111 123344443 2233888887654
No 237
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=28.96 E-value=1e+02 Score=25.55 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+.+..+.|...++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 432 a~aa~~~A~~l~a~aIv~~T~S---------G~TA~~iSr~RP~~PIia~T~~ 475 (550)
T 3gr4_A 432 AVGAVEASFKCCSGAIIVLTKS---------GRSAHQVARYRPRAPIIAVTRN 475 (550)
T ss_dssp HHHHHHHHHHTTCSCEEEECSS---------SHHHHHHHTTCCSSCEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCC
Confidence 3445566778889988877663 7888888887777999998654
No 238
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=28.81 E-value=30 Score=24.36 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=36.3
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcC--CcEEEEeeCCCC---CccccccCchhHHHH-hcCCCCcEEEEcCC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLK--PAAVVIGSRGRG---LIQSVLQGSVGEYCL-HHCKTAPIIVVPGK 171 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~--~dliV~G~~~~~---~~~~~~~gs~~~~ll-~~~~~~pVlvv~~~ 171 (179)
+.+.|++++. ...+....+ .++.+ +|++++|+.+-. ..... .|+..-.++ ++.. +|++|+-+.
T Consensus 26 L~~~gI~vtl--I~Dsa~~~~---m~~~~~~Vd~VivGAd~v~~nG~v~nk-iGT~~~Al~Ak~~~-vPf~V~a~~ 94 (191)
T 1w2w_B 26 LVYDKIPSTL--ITDSSIAYR---IRTSPIPIKAAFVGADRIVRNGDTANK-IGTLQLAVICKQFG-IKFFVVAPK 94 (191)
T ss_dssp HHHHTCCBEE--BCGGGHHHH---HHHCSSCEEEEEECCSEECTTSCEEEE-TTHHHHHHHHHHHT-CEEEEECCG
T ss_pred HHHcCCCEEE--EechHHHHH---HHhCCCCCCEEEECccEEecCCCEEec-ccHHHHHHHHHHcC-CCEEEeccc
Confidence 3445788763 233333333 33455 999999997632 22222 366555555 4455 999998543
No 239
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=28.71 E-value=1e+02 Score=18.72 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=22.8
Q ss_pred HHHHHHc-CCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 123 CKEAERL-KPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 123 ~~~a~~~-~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
++..... .+|++++...-.+....+ ...+.+-...+++|++++-..
T Consensus 42 ~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 42 IEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 3444444 688888876532111111 233444443333777777543
No 240
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=28.67 E-value=1.4e+02 Score=20.18 Aligned_cols=34 Identities=9% Similarity=0.009 Sum_probs=16.8
Q ss_pred hcCceeEEEEecCChHHH----HHHHHHHcCCcEEEEe
Q 030298 104 VAMVRTKARIVEGDAAKV----ICKEAERLKPAAVVIG 137 (179)
Q Consensus 104 ~~~~~~~~~~~~g~~~~~----I~~~a~~~~~dliV~G 137 (179)
..|.++......+|-.+. |.+.++..++|+||..
T Consensus 42 ~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 42 EAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 345665544444443333 3333332358887765
No 241
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=28.54 E-value=51 Score=25.33 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=30.8
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
.++|+++.|++.....+...+.......+.++.++..
T Consensus 195 ~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~l 231 (329)
T 4edg_A 195 TSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQL 231 (329)
T ss_dssp CSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3789999999999988888888888777778777654
No 242
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=28.34 E-value=1.1e+02 Score=19.22 Aligned_cols=51 Identities=4% Similarity=-0.024 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHH-cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 116 GDAAKVICKEAER-LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~-~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+..+ .++..+. ..+|+|+++..-.+ ...+ ...+.+-...+++|++++-..
T Consensus 36 ~~~~~-a~~~l~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 36 ETVSD-ALAFLEADNTVDLILLDVNLPD-AEAI---DGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp SSHHH-HHHHHHTTCCCSEEEECC-------CH---HHHHHHHHHCTTSEEEEC---
T ss_pred cCHHH-HHHHHhccCCCCEEEEeCCCCC-CchH---HHHHHHHHhCCCCeEEEEeCC
Confidence 44443 4444555 78999999876322 1111 234555544444888887543
No 243
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=28.21 E-value=1.6e+02 Score=20.93 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 54 SKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 54 s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
+..+++.+...+...+.++.++.+.
T Consensus 45 n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 45 NLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3455666666666666677776654
No 244
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=28.07 E-value=2.3e+02 Score=22.52 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHhccCCC-EEEEEEEec
Q 030298 51 GPNSKHAFDWALIHLCRLAD-TIHLVHAVS 79 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~~-~l~~v~v~~ 79 (179)
...+++.+++|.++|...+. +++++|=..
T Consensus 196 ~~~~eRiar~AFe~A~~r~rkkVt~v~KaN 225 (409)
T 2e0c_A 196 KYKTQRITRLAIQYAIEHKRKKVTIMHKGN 225 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence 35688999999999987754 699987544
No 245
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=27.96 E-value=82 Score=22.45 Aligned_cols=34 Identities=12% Similarity=-0.000 Sum_probs=26.5
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
.++|++++.++..+..+.+.+..|.+ .+ +++++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~ 52 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVV 52 (209)
T ss_dssp CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEE
T ss_pred CCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEE
Confidence 47999999999888888887777655 45 776664
No 246
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=27.56 E-value=1.5e+02 Score=21.58 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=26.5
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
.++++|++.+...|..++..+.+.. +.+++.+++..
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~---~~~v~av~~~~ 60 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVF---KENAHALLMPS 60 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHH---GGGEEEEECCC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhC---CCCEEEEEeCC
Confidence 4789999999988887777665543 34688888754
No 247
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=27.50 E-value=2.5e+02 Score=22.85 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=51.8
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec------
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE------ 115 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 115 (179)
+++++++.+...|..++..+.+. .|.+++.+|+........ .. +...+...+..|++..+.-..
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g~~~~~---e~----~~~~~~la~~lgi~~~~v~~~~~f~~~ 297 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNGLLRLN---EA----EQVLDMFGDHFGLNIVHVPAEDRFLSA 297 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSCSCTT---HH----HHHHHHHTTTTCCCEEEEECHHHHHHH
T ss_pred cceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCCCCCch---HH----HHHHHHHHHHhCCcEEEEeccHHHHHh
Confidence 78999999998887776665443 256899999875432111 11 111122334445554432211
Q ss_pred --C--ChH-----------HHHHHHHHHc-CCcEEEEeeC
Q 030298 116 --G--DAA-----------KVICKEAERL-KPAAVVIGSR 139 (179)
Q Consensus 116 --g--~~~-----------~~I~~~a~~~-~~dliV~G~~ 139 (179)
| ++. +.+.++|++. +++.|+.|+.
T Consensus 298 l~~~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~ 337 (525)
T 1gpm_A 298 LAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTI 337 (525)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCC
T ss_pred hcCCCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 1 221 2345668887 8999999984
No 248
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=27.45 E-value=80 Score=22.77 Aligned_cols=37 Identities=8% Similarity=-0.013 Sum_probs=21.0
Q ss_pred hhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEe-eC
Q 030298 102 MDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIG-SR 139 (179)
Q Consensus 102 ~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G-~~ 139 (179)
....+..+.+.+-.|=-.+.+.+. .+.++|.+|+| +.
T Consensus 161 ~~~~~~~~~I~VdGGI~~~~~~~~-~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 161 REREGLEYEIEVDGSCNQATYEKL-MAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHTCCCEEEEESCCSTTTHHHH-HHHTCCEEEECTTT
T ss_pred HhccCCCceEEEECCcCHHHHHHH-HHcCCCEEEEccHH
Confidence 333445555555445223344433 45689999999 54
No 249
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=27.44 E-value=1.3e+02 Score=25.30 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
+.+....|.+.++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 381 a~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pIia~t~~ 424 (606)
T 3t05_A 381 GISVAHTALNLNVKAIVAATES---------GSTARTISKYRPHSDIIAVTPS 424 (606)
T ss_dssp HHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEEcCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 3444566788889988877663 7888989888777999998654
No 250
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=27.31 E-value=1.4e+02 Score=24.97 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.+..+.|.+.++..||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 361 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~Rp~~pI~a~t~~ 405 (587)
T 2e28_A 361 IGQSVAHTALNLDVAAIVTPTVS---------GKTPQMVAKYRPKAPIIAVTSN 405 (587)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESS
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEECCC
Confidence 34455667788889988876553 7888989887777999998654
No 251
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=27.12 E-value=1.5e+02 Score=20.20 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=24.4
Q ss_pred CeEEEEecC---CcchHHHHHHHHHH-hccCCCEEEEEEEecC
Q 030298 42 RDILIAVDH---GPNSKHAFDWALIH-LCRLADTIHLVHAVSS 80 (179)
Q Consensus 42 ~~Ilv~vd~---s~~s~~al~~a~~l-a~~~~~~l~~v~v~~~ 80 (179)
.+|++-... ...+..+.+++.+. +...|.++.++.+.+.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 356655433 24467777777666 5555778888876543
No 252
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=27.11 E-value=1.5e+02 Score=20.30 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=29.4
Q ss_pred cCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHh-cCCCCcEEEEcCC
Q 030298 115 EGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLH-HCKTAPIIVVPGK 171 (179)
Q Consensus 115 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~-~~~~~pVlvv~~~ 171 (179)
..+..+++..++....+|+|++...-.+ ..++ .....+-. ..+++||+++-..
T Consensus 39 ~~~~~~~~~~~~~~~~~dlvllD~~mp~-~~G~---~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 39 PFSELWLEENKPESRSIQMLVIDYSRIS-DDVL---TDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp CGGGHHHHTTCSGGGGCCEEEEEGGGCC-HHHH---HHHHHHHHHHCTTCEEEEEEEC
T ss_pred eCCcHHHHHHHhhccCCCEEEEeCCCCC-CCHH---HHHHHHHHhhCCCCcEEEEECC
Confidence 3455566666566677888888866322 1111 23344444 2333888877543
No 253
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=27.06 E-value=1.1e+02 Score=18.73 Aligned_cols=48 Identities=6% Similarity=0.045 Sum_probs=23.6
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCC----CccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRG----LIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~----~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++..+...+|+|++...-.+ ....+ ...+.+-+..+++|++++-.
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEEC
Confidence 33444555566888888765320 11111 23344444333377777643
No 254
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=26.80 E-value=2e+02 Score=21.56 Aligned_cols=113 Identities=11% Similarity=-0.003 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHhccCCCEEEEEEEecCCch--hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHH--HHHHHHHH
Q 030298 53 NSKHAFDWALIHLCRLADTIHLVHAVSSVQN--QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAK--VICKEAER 128 (179)
Q Consensus 53 ~s~~al~~a~~la~~~~~~l~~v~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~--~I~~~a~~ 128 (179)
-...+++.-+++....|. +.+.+.....+ ....++..+.++...+... ..+.+-.-+-..+..+ .+.+.|++
T Consensus 26 iD~~~l~~lv~~li~~Gv--~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~--grvpviaGvg~~~t~~ai~la~~A~~ 101 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGS--DGLCILANFSEQFAITDDERDVLTRTILEHVA--GRVPVIVTTSHYSTQVCAARSLRAQQ 101 (309)
T ss_dssp BCHHHHHHHHHHHHHTTC--SCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT--TSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCC--CEEEECccccCcccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCchHHHHHHHHHHHHH
Confidence 345555555555544443 23333333222 1223333444444333321 2344433222224444 44567889
Q ss_pred cCCcEEEEeeCCC----CCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 129 LKPAAVVIGSRGR----GLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 129 ~~~dliV~G~~~~----~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++|-+.+-...+ ....+-++. --+.|...++ .|+++...+
T Consensus 102 ~Gadavlv~~Pyy~~~~~~s~~~l~~-~f~~va~a~~-lPiilYn~P 146 (309)
T 3fkr_A 102 LGAAMVMAMPPYHGATFRVPEAQIFE-FYARVSDAIA-IPIMVQDAP 146 (309)
T ss_dssp TTCSEEEECCSCBTTTBCCCHHHHHH-HHHHHHHHCS-SCEEEEECG
T ss_pred cCCCEEEEcCCCCccCCCCCHHHHHH-HHHHHHHhcC-CCEEEEeCC
Confidence 9999998886543 122222222 2356778888 999998644
No 255
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=26.60 E-value=1.5e+02 Score=19.89 Aligned_cols=8 Identities=0% Similarity=-0.006 Sum_probs=4.3
Q ss_pred CCcEEEEe
Q 030298 130 KPAAVVIG 137 (179)
Q Consensus 130 ~~dliV~G 137 (179)
++|+||..
T Consensus 62 ~~DlVitt 69 (164)
T 2is8_A 62 GLDLILTN 69 (164)
T ss_dssp CCSEEEEE
T ss_pred CCCEEEEc
Confidence 46655543
No 256
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=26.57 E-value=1.6e+02 Score=20.26 Aligned_cols=33 Identities=9% Similarity=-0.168 Sum_probs=20.8
Q ss_pred ceeEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 107 VRTKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 107 ~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
..+.......++.+..++.+.+.++|.+++...
T Consensus 54 ~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 54 KEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp SEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 444444444455566677777788888888654
No 257
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=26.16 E-value=79 Score=22.51 Aligned_cols=35 Identities=6% Similarity=-0.033 Sum_probs=25.3
Q ss_pred CeEEEEecCCcchHH-HHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKH-AFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~-al~~a~~la~~~~~~l~~v~v 77 (179)
++|++++.++-..-. +++....|.+ .|.+++++--
T Consensus 6 k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T 41 (207)
T 3mcu_A 6 KRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVS 41 (207)
T ss_dssp CEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEEC
T ss_pred CEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEe
Confidence 899999999866554 6676655544 4888887753
No 258
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=25.98 E-value=2.3e+02 Score=23.01 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=24.2
Q ss_pred eeEEEEecCChHHHHHHH--HHHcCCcEEEEeeC
Q 030298 108 RTKARIVEGDAAKVICKE--AERLKPAAVVIGSR 139 (179)
Q Consensus 108 ~~~~~~~~g~~~~~I~~~--a~~~~~dliV~G~~ 139 (179)
-..+.+..|+.-+.|.+. |..+++|.|.+=++
T Consensus 152 ~iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRt 185 (516)
T 1xrs_A 152 LLYVIVATGNIYEDITQAVAAAKQGADVIAVIRT 185 (516)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred EEEEEEecCchHHHHHHHHHHHHcCCCEEEEecc
Confidence 344556669999988865 78999999987654
No 259
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=25.97 E-value=2.1e+02 Score=21.38 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=58.5
Q ss_pred cCCCeEEEEecCCcchHHHHHHHHHHhcc---CCC-EEEEEEEecCCchh-hH---HHHHHHHHHHHHHHHhhhcCceeE
Q 030298 39 RRGRDILIAVDHGPNSKHAFDWALIHLCR---LAD-TIHLVHAVSSVQNQ-IV---YDMSQGLMEKLAIEAMDVAMVRTK 110 (179)
Q Consensus 39 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~---~~~-~l~~v~v~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~~~~ 110 (179)
+.++.|=|+|.+..+-..|+.-|..+... ... .+.+.|..+..... +. ..+-....+.. -..++.+.+...
T Consensus 129 p~~~~vrvaVEGNSsQdsAVaIA~~i~~~~~~~~~~~~~FyH~~d~~~v~~PfylL~~eK~~Afe~F-I~~fNSG~i~AS 207 (279)
T 3n4p_A 129 PYLDELRIAVEGNTNQAAAVRIACLIRQSVQSSTLIRVLFYHTPDQNHIEQPFYLMGRDKALAVEQF-ISRFNSGYIKAS 207 (279)
T ss_dssp TTCCEEEEEEBCSSCHHHHHHHHHHHHHHHHHHCCCEEEEECEEETTTEEESCBCCSTHHHHHHHHH-HHHHHTTCEEEE
T ss_pred cccceEEEEEecCccHHHHHHHHHHHHHHhhhcccccEEEEecCCCccccCCchhhccchHHHHHHH-HHHhcCCceEEe
Confidence 36789999999988888888888777655 333 48899987764211 11 12223334443 333555555554
Q ss_pred EEEec------CChHHHHHHHHHHcCCcEEEE
Q 030298 111 ARIVE------GDAAKVICKEAERLKPAAVVI 136 (179)
Q Consensus 111 ~~~~~------g~~~~~I~~~a~~~~~dliV~ 136 (179)
-.+.. -||.+.+++..+. +.-++.
T Consensus 208 QelVS~TIkLs~DPVeYL~eQi~n--i~~~~~ 237 (279)
T 3n4p_A 208 QELVSYTIKLSHDPIEYLLEQIQN--LHRVTL 237 (279)
T ss_dssp EEEECSSSBTTBCHHHHHHHHHHT--CCC---
T ss_pred eeeeeeeEEeccChHHHHHHHHhh--cEEEec
Confidence 44433 3899999999998 555555
No 260
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=25.95 E-value=1.4e+02 Score=21.62 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=29.5
Q ss_pred HHHHHHHHH--HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 AKVICKEAE--RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 ~~~I~~~a~--~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.|.+..+ ..++|++|+-.-+ +.......+...-++++... +||++|-..
T Consensus 118 ~~~I~~~~~~l~~~~D~vlIEGag-Gl~~pl~~~~~~adlA~~l~-~pVILV~~~ 170 (242)
T 3qxc_A 118 TDNLTQRLHNFTKTYDLVIVEGAG-GLCVPITLEENMLDFALKLK-AKMLLISHD 170 (242)
T ss_dssp HHHHHHHHHHGGGTCSEEEEECCS-CTTCBSSSSCBHHHHHHHHT-CEEEEEECC
T ss_pred HHHHHHHHHHHHhcCCEEEEECCC-CccccccccchHHHHHHHcC-CCEEEEEcC
Confidence 344554433 3469999987553 22222112333456888889 999887543
No 261
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=25.91 E-value=2.2e+02 Score=21.63 Aligned_cols=75 Identities=15% Similarity=0.031 Sum_probs=46.8
Q ss_pred CcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec---C-C---hHHHH
Q 030298 51 GPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE---G-D---AAKVI 122 (179)
Q Consensus 51 s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---g-~---~~~~I 122 (179)
.+.+..++..|.+|+. .+ .+++++.+-+. . + . .++.....|.+--+++.. + + ..+.|
T Consensus 15 ~~~~~eal~~A~~L~e-~g~~~V~av~~G~~--~-------~-~----~~~~a~a~GaDkv~~v~d~~l~~~~~~~a~~L 79 (320)
T 1o97_D 15 RPVSLELIGAANGLKK-SGEDKVVVAVIGSQ--A-------D-A----FVPALSVNGVDELVVVKGSSIDFDPDVFEASV 79 (320)
T ss_dssp CTHHHHHHHHHHHHCS-STTCEEEEEEESTT--G-------G-G----GHHHHCBTTCSEEEEEECSCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh-CCCCcEEEEEECCc--H-------H-H----HHHHHHhcCCceEEEEeCcccCCCHHHHHHHH
Confidence 4678899999999987 66 58888876432 1 0 1 112112224443333322 1 2 25677
Q ss_pred HHHHHHcCCcEEEEeeCC
Q 030298 123 CKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 123 ~~~a~~~~~dliV~G~~~ 140 (179)
.+.+++.++|+|++|...
T Consensus 80 a~~i~~~~pdlVL~g~ts 97 (320)
T 1o97_D 80 SALIAAHNPSVVLLPHSV 97 (320)
T ss_dssp HHHHHHHCCSEEEEECSH
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 788888899999999854
No 262
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=25.73 E-value=2.2e+02 Score=21.66 Aligned_cols=90 Identities=9% Similarity=0.050 Sum_probs=45.5
Q ss_pred eEEEEecCCcc--hHHHHHHHHHHhc-cCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH
Q 030298 43 DILIAVDHGPN--SKHAFDWALIHLC-RLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (179)
Q Consensus 43 ~Ilv~vd~s~~--s~~al~~a~~la~-~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (179)
++++|--+... ....++...+++. ....++.++|..... ..++..+.+. +.+...+.+++..-......
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~~~~k~~i~~~S~~g-------nT~~la~~i~-~~l~~~g~~v~~~~~~~~~~ 298 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGMVDERVTVIYDTMHG-------STRKMAHAIA-EGAMSEGVDVRVYCLHEDDR 298 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTCCCSEEEEEECCSSS-------HHHHHHHHHH-HHHHTTTCEEEEEETTTSCH
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccCCCCcEEEEEECCCh-------HHHHHHHHHH-HHHHhCCCeEEEEECCCCCH
Confidence 45555443322 3555655556654 334577777754321 1122222222 22333456665443333334
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRG 142 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~ 142 (179)
..+.+...+ +|.||+|+.-+.
T Consensus 299 ~~~~~~l~~--~d~iiigsP~y~ 319 (404)
T 2ohh_A 299 SEIVKDILE--SGAIALGAPTIY 319 (404)
T ss_dssp HHHHHHHHT--CSEEEEECCEET
T ss_pred HHHHHHHHH--CCEEEEECcccc
Confidence 455544444 999999987543
No 263
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=25.63 E-value=1.2e+02 Score=21.40 Aligned_cols=42 Identities=10% Similarity=0.045 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
-...|++.|+..++.+|.++..++.+. ..+-.++++++ ++-.
T Consensus 137 E~~~Lld~A~~~naqvvll~~~~RqG~------GnAl~vl~~ag-v~t~ 178 (189)
T 2l8b_A 137 ETLTLLDGAARHNVQVLITDSGQRTGT------GSALMAMKDAG-VNTY 178 (189)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSTTTCS------HHHHHHHHHTT-CCCC
T ss_pred HHHHHHHHHHhcCCEEEEeCCcccccC------CCHHHHHHhCC-CceE
Confidence 356788999999999999998866554 34566888887 5543
No 264
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=25.62 E-value=1.3e+02 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 120 KVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 120 ~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+..+.|...++. ||.-+.. |.++..+.+.-|.||++.+-+.
T Consensus 364 ~aa~~~a~~~~a~-Iv~~T~S---------G~tA~~vsr~RP~~pIia~T~~ 405 (461)
T 3qtg_A 364 KGLVELAQDLGAN-ILVFSMS---------GTLARRIAKFRPRGVVYVGTPN 405 (461)
T ss_dssp HHHHHHHHHHTCE-EEEECSS---------SHHHHHHHTTCCSSCEEEEESC
T ss_pred HHHHHHHHhcCCC-EEEECCC---------cHHHHHHHhhCCCCCEEEeCCC
Confidence 3445556777888 5554442 7888888887777999998654
No 265
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=25.53 E-value=1.1e+02 Score=20.82 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=27.0
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
..+.+++++..+..+...++ +++.|+..|+++..+.-
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~ 144 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVK-AVEAAVTRDMTIVALTG 144 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeC
Confidence 34678888888888877776 44777777887766653
No 266
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=25.39 E-value=1.2e+02 Score=18.65 Aligned_cols=47 Identities=6% Similarity=-0.009 Sum_probs=23.0
Q ss_pred HHHHHHH-cCCcEEEEeeCCCCCccccccCchhHHHHh--cCCCCcEEEEcCC
Q 030298 122 ICKEAER-LKPAAVVIGSRGRGLIQSVLQGSVGEYCLH--HCKTAPIIVVPGK 171 (179)
Q Consensus 122 I~~~a~~-~~~dliV~G~~~~~~~~~~~~gs~~~~ll~--~~~~~pVlvv~~~ 171 (179)
.++..++ ..+|+|++...-.+....+ .+.+.+-+ ..+++|++++-..
T Consensus 41 a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 41 FYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 3344455 6788888876532111111 23344433 2333777777543
No 267
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=25.37 E-value=1.6e+02 Score=20.71 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
....++.+.+.++|.|++..........-+.-....++.+..+ +|+++.-
T Consensus 156 ~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~-~pvia~G 205 (253)
T 1h5y_A 156 AVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVR-IPVIASG 205 (253)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCS-SCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcC-CCEEEeC
Confidence 3455667777899999887655433322111134466666677 9988764
No 268
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=25.15 E-value=1.1e+02 Score=20.87 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=28.8
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
..+.+++.+..+..+...++ +++.|+..|+++..+.-
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~-~~~~ak~~g~~vI~IT~ 148 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQ-AIQAAHDREMLVVALTG 148 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEEC
Confidence 34779999999988888776 55888888888776654
No 269
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=24.76 E-value=2.5e+02 Score=21.93 Aligned_cols=93 Identities=9% Similarity=0.082 Sum_probs=51.7
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCC---------E-----EEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCce
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLAD---------T-----IHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVR 108 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~---------~-----l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 108 (179)
+|-|.+.....++.-.+.|.++.+.+|. . =.++|+.-++... ......+.. ....+...++.
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~---se~~ttI~~-I~~~a~~~gyk 89 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFT---SNIDSAINK-IVKLADDKEVQ 89 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGG---GGHHHHHHH-HHGGGGCTTEE
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCch---HHHHHHHHH-HHHHhhcCCCe
Confidence 7888888776677767777777666543 1 2366664332221 122223333 22334444555
Q ss_pred eEEEEecCChHHHHHHHHHHcCCcEEEEeeC
Q 030298 109 TKARIVEGDAAKVICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 109 ~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 139 (179)
+-+...........++..++.+.|.|+++..
T Consensus 90 ~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 90 AIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp EEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred EEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 4332222222356678888889998887764
No 270
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=24.72 E-value=1.7e+02 Score=22.86 Aligned_cols=14 Identities=14% Similarity=-0.050 Sum_probs=6.8
Q ss_pred HHHHHHHHHcCCcE
Q 030298 120 KVICKEAERLKPAA 133 (179)
Q Consensus 120 ~~I~~~a~~~~~dl 133 (179)
+.+.+.+++.++|+
T Consensus 96 ~~~~~~~~~~~~d~ 109 (387)
T 3uhj_A 96 ERVRKVAIEHGSDI 109 (387)
T ss_dssp HHHHHHHHHHTCSE
T ss_pred HHHHHHHhhcCCCE
Confidence 34444455555554
No 271
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=24.70 E-value=1.6e+02 Score=20.94 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=5.6
Q ss_pred HHHHhcCCCCcEEE
Q 030298 154 EYCLHHCKTAPIIV 167 (179)
Q Consensus 154 ~~ll~~~~~~pVlv 167 (179)
.++.+... +||++
T Consensus 72 ~~i~~~~~-ipvi~ 84 (247)
T 3tdn_A 72 RFVRPLTT-LPIIA 84 (247)
T ss_dssp HHHGGGCC-SCEEE
T ss_pred HHHHHhCC-CCEEE
Confidence 33444444 44444
No 272
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.67 E-value=1.3e+02 Score=18.60 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=20.0
Q ss_pred HcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 128 RLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 128 ~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
...+|+|++...-.+ ...+ ...+.+-+..+++|++++-..
T Consensus 47 ~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 47 CNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp TTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEECT
T ss_pred CCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEECC
Confidence 456788877765321 1111 233444444433777776543
No 273
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=24.33 E-value=93 Score=20.54 Aligned_cols=50 Identities=10% Similarity=-0.027 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 118 AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 118 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
-.....+..++.+.+.-++|++.-++....-.-.+-+.+.+..+ .||+++
T Consensus 71 y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~-~pV~L~ 120 (141)
T 4e0q_A 71 YYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINE-CPIMLQ 120 (141)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTC-CCEEEE
T ss_pred HHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCC-CCEEEE
Confidence 35566677777778888888875433111100123345556667 788776
No 274
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=24.30 E-value=2.4e+02 Score=21.60 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=33.2
Q ss_pred ChHHH--HHHHHHHcCCcEEEEeeCCCCC-cc-ccccCchhHHHHh-cCCCCcEEEEcC
Q 030298 117 DAAKV--ICKEAERLKPAAVVIGSRGRGL-IQ-SVLQGSVGEYCLH-HCKTAPIIVVPG 170 (179)
Q Consensus 117 ~~~~~--I~~~a~~~~~dliV~G~~~~~~-~~-~~~~gs~~~~ll~-~~~~~pVlvv~~ 170 (179)
+..++ +.+.|++.++|-+++-...... .. .-++ .--+.|.. .++ .||++...
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~IA~aa~~-lPiilYn~ 159 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQK-AHFKAILSAAPE-IPAVIYNS 159 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHH-HHHHHHHHHSTT-SCEEEEEB
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHH-HHHHHHHhhCCC-CcEEEEec
Confidence 44444 4677889999999888765443 22 2222 22345777 788 99998753
No 275
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=24.17 E-value=2.3e+02 Score=21.18 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=50.4
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec-CC-
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE-GD- 117 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-g~- 117 (179)
..++|.|-+.++.+...++-.+.+- ...++++.++-...+. . .....+..|+++...-.. .+
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~~~i~~Visn~~~--a-------------~~~~A~~~gIp~~~~~~~~~~r 150 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRL-GELDMEVVGIISNHPR--E-------------ALSVSLVGDIPFHYLPVTPATK 150 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHH-TSSCCEEEEEEESSCG--G-------------GCCCCCCTTSCEEECCCCGGGH
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHC-CCCCeEEEEEEeCChH--H-------------HHHHHHHcCCCEEEEeccCcch
Confidence 3468888888887777666665443 3345666555443221 0 111244557776532111 11
Q ss_pred --hHHHHHHHHHHcCCcEEEEeeCC
Q 030298 118 --AAKVICKEAERLKPAAVVIGSRG 140 (179)
Q Consensus 118 --~~~~I~~~a~~~~~dliV~G~~~ 140 (179)
-.+.+++..++.++|++|+....
T Consensus 151 ~~~~~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 151 AAQESQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp HHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred hhHHHHHHHHHHHhCCCEEEhhhhh
Confidence 23578899999999999998764
No 276
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=23.85 E-value=86 Score=19.43 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=20.0
Q ss_pred HHHHHcCCcEEEEeeCCCCC-ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 124 KEAERLKPAAVVIGSRGRGL-IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~-~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
+..++..+|+|++...-.+. ...+ ...+.+-+..+++|++++-.
T Consensus 44 ~~l~~~~~dlvi~D~~l~~~~~~g~---~~~~~l~~~~~~~~ii~~s~ 88 (136)
T 3kto_A 44 RQQISDDAIGMIIEAHLEDKKDSGI---ELLETLVKRGFHLPTIVMAS 88 (136)
T ss_dssp TSCCCTTEEEEEEETTGGGBTTHHH---HHHHHHHHTTCCCCEEEEES
T ss_pred HHHhccCCCEEEEeCcCCCCCccHH---HHHHHHHhCCCCCCEEEEEc
Confidence 34444567777776542110 1111 23333433333367766644
No 277
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=23.77 E-value=1.9e+02 Score=20.27 Aligned_cols=75 Identities=8% Similarity=-0.106 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhccCCCEEEEEEEecCCch-----hhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHHHHHHHHc
Q 030298 55 KHAFDWALIHLCRLADTIHLVHAVSSVQN-----QIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVICKEAERL 129 (179)
Q Consensus 55 ~~al~~a~~la~~~~~~l~~v~v~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~ 129 (179)
...++.++.+|...|++..++|.-..... ....+...+.++++.+. .+..|+.+-++-..+...+.+.++.+..
T Consensus 75 ~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~-a~~~gv~l~lEn~~~~~~~~~~~l~~~v 153 (254)
T 3ayv_A 75 LRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRR-ARTLGVRLLLENSHEPHPEALRPVLEAH 153 (254)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHH-HHHHTCEEEEECSSCSSGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHH-HhhcCCEEEEcCCCCCCHHHHHHHHHhc
Confidence 45678888999999999887775332211 11122333344443333 3344666554443343444555555554
Q ss_pred C
Q 030298 130 K 130 (179)
Q Consensus 130 ~ 130 (179)
+
T Consensus 154 ~ 154 (254)
T 3ayv_A 154 A 154 (254)
T ss_dssp T
T ss_pred C
Confidence 3
No 278
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=23.72 E-value=1.8e+02 Score=19.90 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=40.5
Q ss_pred eEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChHHHH
Q 030298 43 DILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAAKVI 122 (179)
Q Consensus 43 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~I 122 (179)
+++++.|+.. ...+++.+..+.. + +..+++-.. .........++.+.+. . .+..+.......|+.+..
T Consensus 2 ~li~a~d~~~-~~~~~~~~~~~~~--~--v~~iev~~~----~~~~~g~~~i~~l~~~-~--~~~~i~~~l~~~di~~~~ 69 (207)
T 3ajx_A 2 KLQVAIDLLS-TEAALELAGKVAE--Y--VDIIELGTP----LIKAEGLSVITAVKKA-H--PDKIVFADMKTMDAGELE 69 (207)
T ss_dssp EEEEEECCSC-HHHHHHHHHHHGG--G--CSEEEECHH----HHHHHCTHHHHHHHHH-S--TTSEEEEEEEECSCHHHH
T ss_pred eEEEEeCCCC-HHHHHHHHHHhhc--c--CCEEEECcH----HHHhhCHHHHHHHHHh-C--CCCeEEEEEEecCccHHH
Confidence 6888999653 3444555544443 2 233555221 1111111223222111 1 134444434444645556
Q ss_pred HHHHHHcCCcEEEEe
Q 030298 123 CKEAERLKPAAVVIG 137 (179)
Q Consensus 123 ~~~a~~~~~dliV~G 137 (179)
++.+.+.++|.|.+-
T Consensus 70 ~~~a~~~Gad~v~vh 84 (207)
T 3ajx_A 70 ADIAFKAGADLVTVL 84 (207)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHhCCCCEEEEe
Confidence 677778888888764
No 279
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=23.63 E-value=1.3e+02 Score=18.37 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=23.9
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++......+|+|++...-.+....+ ...+.+-.... +|++++-..
T Consensus 46 a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~-~~ii~ls~~ 91 (140)
T 3cg0_A 46 AVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCN-LPIIFITSS 91 (140)
T ss_dssp HHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSC-CCEEEEECC
T ss_pred HHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCC-CCEEEEecC
Confidence 33444556688888886532111111 23344444434 888877543
No 280
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=23.62 E-value=2.8e+02 Score=22.04 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHhccCC-CEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLA-DTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~-~~l~~v~v~~ 79 (179)
..+++.+++|.++|...+ .+++++|=..
T Consensus 197 ~~~eRiar~AFe~A~~r~rkkVt~v~KaN 225 (412)
T 2iv0_A 197 FATKRLVRMAIRYAIENNRKSVTLVHKGN 225 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence 567899999999998775 4699998543
No 281
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=23.57 E-value=1.3e+02 Score=18.07 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++......+|++++...-.+ ..++ ...+.+-...+++|++++-.
T Consensus 39 a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 39 ALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEc
Confidence 334445567888888765322 1111 23344443333378777754
No 282
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=23.54 E-value=2e+02 Score=22.72 Aligned_cols=29 Identities=3% Similarity=-0.227 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecC
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSS 80 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~ 80 (179)
..+++.+++|.++|...+.+|+++|=...
T Consensus 184 ~~~eRiar~AFe~A~~r~~kVt~v~KaNV 212 (402)
T 2uxq_A 184 ASIGHFARACFEYSLDQKIDCWFATKDTI 212 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCCc
Confidence 66788999999999887778888875443
No 283
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.52 E-value=1.5e+02 Score=18.83 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC--CCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC--KTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~--~~~pVlvv~~~ 171 (179)
..++..+...+|+|++...-.+ ...+ .+.+.+-... +++|++++-..
T Consensus 42 ~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 42 EAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 3445556677899999876322 1111 2334443331 23888887653
No 284
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.50 E-value=2.4e+02 Score=21.21 Aligned_cols=94 Identities=15% Similarity=0.016 Sum_probs=45.3
Q ss_pred CCeEEEEecCCcc---hHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCC
Q 030298 41 GRDILIAVDHGPN---SKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGD 117 (179)
Q Consensus 41 ~~~Ilv~vd~s~~---s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~ 117 (179)
++++++-+++... .....+....+....+..+.+...... .. .. ++..+... .+.+. +.+..||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~---~~----a~----~~~~~~~~-~~~d~-vvv~GGD 90 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKI---GD----AT----LEAERAMH-ENYDV-LIAAGGD 90 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCST---TH----HH----HHHHHHTT-TTCSE-EEEEECH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCc---ch----HH----HHHHHHhh-cCCCE-EEEEcCc
Confidence 4788888887654 344555666666655655544322111 11 11 11112211 12322 3344555
Q ss_pred -hHHHHHHHH--HHcCCcEEEEeeCCCCCcccc
Q 030298 118 -AAKVICKEA--ERLKPAAVVIGSRGRGLIQSV 147 (179)
Q Consensus 118 -~~~~I~~~a--~~~~~dliV~G~~~~~~~~~~ 147 (179)
....++... ...+.-+.++.....+.+.+.
T Consensus 91 GTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~ 123 (337)
T 2qv7_A 91 GTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRA 123 (337)
T ss_dssp HHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHH
T ss_pred hHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHH
Confidence 344444444 334566777776655555554
No 285
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=23.45 E-value=1.5e+02 Score=21.81 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=26.8
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCC
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSV 81 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~ 81 (179)
.+|+|++. ...|..++..+.++ +.++.++|+....
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~~~i~vv~iDtg~ 89 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----NRNVKVFSLDTGR 89 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----CTTCCEEEECCSC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----CCCceEEEEeCCC
Confidence 68999999 88888888877665 4467888886543
No 286
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.27 E-value=1.2e+02 Score=20.44 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=24.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
+.+++.+..+..+...++ +++.|+..|+++.++.-
T Consensus 80 ~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~ 114 (186)
T 1m3s_A 80 GDLVIIGSGSGETKSLIH-TAAKAKSLHGIVAALTI 114 (186)
T ss_dssp TCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEES
T ss_pred CCEEEEEcCCCCcHHHHH-HHHHHHHCCCEEEEEEC
Confidence 668888888777766655 44777777777766654
No 287
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=23.25 E-value=1e+02 Score=21.93 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=25.9
Q ss_pred HHHHHHHHH---cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 120 KVICKEAER---LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 120 ~~I~~~a~~---~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
+.|.+..++ .++|++|+-.-+. .......+...-++++... .||++|-
T Consensus 97 ~~i~~~~~~~l~~~~D~vlIEgagg-l~~p~~~~~~~adla~~l~-~pviLV~ 147 (228)
T 3of5_A 97 ENLKQFIEDKYNQDLDILFIEGAGG-LLTPYSDHTTQLDLIKALQ-IPVLLVS 147 (228)
T ss_dssp HHHHHHHHGGGGSSCSEEEEEEEEE-TTCBSSSSCBHHHHHHHHT-CCEEEEE
T ss_pred HHHHHHHHHHHHccCCEEEEECCCc-cccccccchhHHHHHHHcC-CCEEEEE
Confidence 445555443 5788888865431 1111111223445777777 8887663
No 288
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.13 E-value=2.4e+02 Score=21.11 Aligned_cols=111 Identities=6% Similarity=-0.063 Sum_probs=56.5
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEecCCchhh--HHHHHHHHHHHHHHHHhhhcCceeEEEEecC--ChHH--HHHHH
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQI--VYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--DAAK--VICKE 125 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~~~~--~I~~~ 125 (179)
.-...+++.-+++....| ++.+.+.....+.. ..++..+.++.. .+..+-++.+..-.| +..+ .+.+.
T Consensus 31 ~iD~~~l~~lv~~li~~G--v~Gl~v~GtTGE~~~Ls~~Er~~v~~~~----~~~~~gr~pviaGvg~~~t~~ai~la~~ 104 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGTFP--FRGFVVQGSNGEFPFLTSSERLEVVSRV----RQAMPKNRLLLAGSGCESTQATVEMTVS 104 (307)
T ss_dssp CBCHHHHHHHHHHHTTSC--CSEEEESSGGGTGGGSCHHHHHHHHHHH----HHTSCTTSEEEEECCCSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcC--CCEEEECccccchhhCCHHHHHHHHHHH----HHHcCCCCcEEEecCCCCHHHHHHHHHH
Confidence 345556665555554444 44455544332222 223333333332 222112233223223 4444 44577
Q ss_pred HHHcCCcEEEEeeCCCCC---ccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 126 AERLKPAAVVIGSRGRGL---IQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 126 a~~~~~dliV~G~~~~~~---~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
|++.++|-+.+-...... ..+-++. --+.|...++ .|+++..-
T Consensus 105 A~~~Gadavlv~~P~y~~~~~s~~~l~~-~f~~ia~a~~-lPiilYn~ 150 (307)
T 3s5o_A 105 MAQVGADAAMVVTPCYYRGRMSSAALIH-HYTKVADLSP-IPVVLYSV 150 (307)
T ss_dssp HHHTTCSEEEEECCCTTGGGCCHHHHHH-HHHHHHHHCS-SCEEEEEC
T ss_pred HHHcCCCEEEEcCCCcCCCCCCHHHHHH-HHHHHHhhcC-CCEEEEeC
Confidence 889999999987655432 2222222 2356778888 99998753
No 289
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=23.08 E-value=2.9e+02 Score=22.05 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHhccCC-CEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLA-DTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~-~~l~~v~v~~ 79 (179)
..+++.+++|.++|...+ .+|+++|=..
T Consensus 214 ~~~eRIar~AFe~A~~r~rkkVT~V~KaN 242 (427)
T 3dms_A 214 EGTERLVRKAIQYAIDNDRKSVTLVHKGN 242 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 567889999999998774 4799888543
No 290
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.98 E-value=1.2e+02 Score=20.42 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=18.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVH 76 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~ 76 (179)
+.+++.+..+..+...++. ++.|+..|+++.++.
T Consensus 88 ~d~~i~iS~sG~t~~~~~~-~~~ak~~g~~vi~IT 121 (187)
T 3sho_A 88 TDLMIGVSVWRYLRDTVAA-LAGAAERGVPTMALT 121 (187)
T ss_dssp TEEEEEECCSSCCHHHHHH-HHHHHHTTCCEEEEE
T ss_pred CCEEEEEeCCCCCHHHHHH-HHHHHHCCCCEEEEe
Confidence 4566666666555554443 355555565555554
No 291
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=22.79 E-value=2e+02 Score=22.81 Aligned_cols=28 Identities=0% Similarity=-0.101 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
..+++.+++|.++|...+.+++++|=..
T Consensus 185 ~~~eRiar~AF~~A~~~~~~vt~v~KaN 212 (402)
T 4aoy_A 185 KSIRSFARACFNYALDMNQDLWFSTKDT 212 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 5678889999999988788888887533
No 292
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=22.69 E-value=3e+02 Score=22.05 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCcchHHHHHHHHHHhccC-CCEEEEEEEec
Q 030298 50 HGPNSKHAFDWALIHLCRL-ADTIHLVHAVS 79 (179)
Q Consensus 50 ~s~~s~~al~~a~~la~~~-~~~l~~v~v~~ 79 (179)
....+++.+++|.++|... ..+++++|=..
T Consensus 205 T~~~~eRIar~AFe~A~~r~rkkVT~v~KaN 235 (435)
T 1tyo_A 205 SRFATRRLMERALEWALRNGNTVVTIMHKGN 235 (435)
T ss_dssp EHHHHHHHHHHHHHHHHHHTCCEEEEEECTT
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Confidence 3466889999999999876 45799887543
No 293
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=22.45 E-value=1.4e+02 Score=18.34 Aligned_cols=13 Identities=15% Similarity=0.154 Sum_probs=6.2
Q ss_pred HHcCCcEEEEeeC
Q 030298 127 ERLKPAAVVIGSR 139 (179)
Q Consensus 127 ~~~~~dliV~G~~ 139 (179)
....+|++++...
T Consensus 41 ~~~~~dlvl~D~~ 53 (139)
T 2jk1_A 41 EEEWVQVIICDQR 53 (139)
T ss_dssp HHSCEEEEEEESC
T ss_pred hcCCCCEEEEeCC
Confidence 3344555555543
No 294
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.43 E-value=1.4e+02 Score=20.05 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
.+.+++.+..+..+...++ +++.|+..|+++.++.-
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g~~vi~iT~ 145 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLE-ALKKAKELNMLCLGLSG 145 (188)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCEEEEEeC
Confidence 3667777777776666554 44666666776666654
No 295
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=22.32 E-value=2.1e+02 Score=20.16 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=53.7
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--CCh-
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--GDA- 118 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~- 118 (179)
++|.|-+.++.....++-.++. ....+.++.++. ...... . ..+..+..|+++...... .+.
T Consensus 4 ~ki~vl~sG~g~~~~~~l~~l~-~~~l~~~I~~Vi--t~~~~~-----------~-v~~~A~~~gIp~~~~~~~~~~~~~ 68 (212)
T 3av3_A 4 KRLAVFASGSGTNFQAIVDAAK-RGDLPARVALLV--CDRPGA-----------K-VIERAARENVPAFVFSPKDYPSKA 68 (212)
T ss_dssp EEEEEECCSSCHHHHHHHHHHH-TTCCCEEEEEEE--ESSTTC-----------H-HHHHHHHTTCCEEECCGGGSSSHH
T ss_pred cEEEEEEECCcHHHHHHHHHHH-hCCCCCeEEEEE--eCCCCc-----------H-HHHHHHHcCCCEEEeCcccccchh
Confidence 5788888887654444333322 111234444443 322111 0 112234456776532111 121
Q ss_pred --HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 119 --AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 119 --~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.+.+++..++.++|++|+...++ + ....++...+ ..++=+++.
T Consensus 69 ~~~~~~~~~l~~~~~Dliv~a~y~~-----i----l~~~~l~~~~-~~~iNiHpS 113 (212)
T 3av3_A 69 AFESEILRELKGRQIDWIALAGYMR-----L----IGPTLLSAYE-GKIVNIHPS 113 (212)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCCS-----C----CCHHHHHHTT-TCEEEEESS
T ss_pred hhHHHHHHHHHhcCCCEEEEchhhh-----h----CCHHHHhhhc-CCEEEEecC
Confidence 35788888999999999986642 1 1244555555 555555443
No 296
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.26 E-value=1.3e+02 Score=17.55 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcC--CCCcEEEEcCC
Q 030298 116 GDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHC--KTAPIIVVPGK 171 (179)
Q Consensus 116 g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~--~~~pVlvv~~~ 171 (179)
.+.. ..++......+|++++...-.+ ... -...+.+-... +++|++++-..
T Consensus 32 ~~~~-~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 32 VDGS-TALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp SCHH-HHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred cCHH-HHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 3443 3445556668999999976432 111 12345554442 33898888654
No 297
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=22.24 E-value=2.2e+02 Score=20.40 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=53.0
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC--C--
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG--D-- 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~-- 117 (179)
.+|+|-+.++.....++-.++.- ...+.++.+|....+. .. ..+..+..|+++....... +
T Consensus 23 ~rI~~l~SG~g~~~~~~l~~l~~-~~~~~~I~~Vvt~~~~--~~------------~~~~A~~~gIp~~~~~~~~~~~r~ 87 (229)
T 3auf_A 23 IRIGVLISGSGTNLQAILDGCRE-GRIPGRVAVVISDRAD--AY------------GLERARRAGVDALHMDPAAYPSRT 87 (229)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHT-TSSSEEEEEEEESSTT--CH------------HHHHHHHTTCEEEECCGGGSSSHH
T ss_pred cEEEEEEeCCcHHHHHHHHHHHh-CCCCCeEEEEEcCCCc--hH------------HHHHHHHcCCCEEEECcccccchh
Confidence 58999988876543333323221 1123344444332211 11 1122344567754321111 1
Q ss_pred -hHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 118 -AAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 118 -~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
-.+.+++..++.++|++|+...++ + ....++...+ ..++=+++
T Consensus 88 ~~~~~~~~~l~~~~~Dliv~agy~~-----I----L~~~~l~~~~-~~~iNiHp 131 (229)
T 3auf_A 88 AFDAALAERLQAYGVDLVCLAGYMR-----L----VRGPMLTAFP-NRILNIHP 131 (229)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCCS-----C----CCHHHHHHST-TCEEEEES
T ss_pred hccHHHHHHHHhcCCCEEEEcChhH-----h----CCHHHHhhcc-CCEEEEcc
Confidence 136788889999999999986642 1 1244555555 55555544
No 298
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.23 E-value=2.2e+02 Score=20.37 Aligned_cols=64 Identities=17% Similarity=0.083 Sum_probs=37.5
Q ss_pred HHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC-ChHHHHHHHHHHcCCcEEEEe
Q 030298 60 WALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIG 137 (179)
Q Consensus 60 ~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G 137 (179)
.++..|+..+.++-++.-..... .++. +... .++++....... +-.+.+++.++..++++||=|
T Consensus 97 ~aL~~a~~~~~kIavVg~~~~~~----------~~~~-i~~l---l~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~ 161 (225)
T 2pju_A 97 QFLAKAGKLTSSIGVVTYQETIP----------ALVA-FQKT---FNLRLDQRSYITEEDARGQINELKANGTEAVVGA 161 (225)
T ss_dssp HHHHHTTCTTSCEEEEEESSCCH----------HHHH-HHHH---HTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHhhCCcEEEEeCchhhh----------HHHH-HHHH---hCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECC
Confidence 36677777777777775433210 1111 2222 246666555554 566778888888889986644
No 299
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=22.19 E-value=1.4e+02 Score=18.11 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=26.0
Q ss_pred HHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 124 KEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 124 ~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
+..++..+|+|++...-.+ ...+ ...+.+-+..+++|++++-...
T Consensus 40 ~~~~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 40 QRVETLKPDIVIIDVDIPG-VNGI---QVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp HHHHHHCCSEEEEETTCSS-SCHH---HHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHhcCCCEEEEecCCCC-CChH---HHHHHHHhcCCCCeEEEEeCCC
Confidence 3445567999999976432 1111 2345555555558888876543
No 300
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.01 E-value=1.3e+02 Score=17.77 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 121 VICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
..++..+...+|++++...-.+ ..++ ...+.+-...+++|++++-..
T Consensus 35 ~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 35 EADYYLNEHIPDIAIVDLGLPD-EDGL---SLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEecC
Confidence 3445556677999999865322 1111 234445444333888887553
No 301
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.98 E-value=2e+02 Score=19.88 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=49.6
Q ss_pred HHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC-ChHHHHHHHHHHcCCcEEEEee
Q 030298 60 WALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG-DAAKVICKEAERLKPAAVVIGS 138 (179)
Q Consensus 60 ~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~ 138 (179)
.++..|+..+.++-++.-...... ++. +...+ ++++....... +-.+.+++.+++.++++||=|
T Consensus 85 ~al~~a~~~~~kIavvg~~~~~~~----------~~~-~~~ll---~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~- 149 (196)
T 2q5c_A 85 RAVYNAKRFGNELALIAYKHSIVD----------KHE-IEAML---GVKIKEFLFSSEDEITTLISKVKTENIKIVVSG- 149 (196)
T ss_dssp HHHHHHGGGCSEEEEEEESSCSSC----------HHH-HHHHH---TCEEEEEEECSGGGHHHHHHHHHHTTCCEEEEC-
T ss_pred HHHHHHHhhCCcEEEEeCcchhhH----------HHH-HHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCeEEECC-
Confidence 366777777777777765332111 111 22332 36666555554 567778888888999996644
Q ss_pred CCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 139 RGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 139 ~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++.+++++.+ +|.+++..
T Consensus 150 ------------~~~~~~A~~~G-l~~vli~s 168 (196)
T 2q5c_A 150 ------------KTVTDEAIKQG-LYGETINS 168 (196)
T ss_dssp ------------HHHHHHHHHTT-CEEEECCC
T ss_pred ------------HHHHHHHHHcC-CcEEEEec
Confidence 34556666677 77666544
No 302
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=21.94 E-value=2.8e+02 Score=21.46 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=37.6
Q ss_pred CceeEEEEecC-C--hHHHHHHHHHHcCCcEEEEeeCCCCC----------ccccccC--------chhHHHHhcC--CC
Q 030298 106 MVRTKARIVEG-D--AAKVICKEAERLKPAAVVIGSRGRGL----------IQSVLQG--------SVGEYCLHHC--KT 162 (179)
Q Consensus 106 ~~~~~~~~~~g-~--~~~~I~~~a~~~~~dliV~G~~~~~~----------~~~~~~g--------s~~~~ll~~~--~~ 162 (179)
.+++.+.+..+ + -...+.+.+.+.++|.|++..+..+. ..+.+.| ....++.+.. .
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~- 298 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGR- 298 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTC-
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCC-
Confidence 45666555554 2 34567778889999999986442211 1112222 2345566666 6
Q ss_pred CcEEEEcC
Q 030298 163 APIIVVPG 170 (179)
Q Consensus 163 ~pVlvv~~ 170 (179)
+||+.+-.
T Consensus 299 ipvI~~GG 306 (367)
T 3zwt_A 299 VPIIGVGG 306 (367)
T ss_dssp SCEEEESS
T ss_pred ceEEEECC
Confidence 99988744
No 303
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=21.91 E-value=1.3e+02 Score=17.67 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=23.4
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPG 170 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~ 170 (179)
.++......+|++++...-.+ ..++ ...+.+-+..+++|++++-.
T Consensus 37 a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 37 ALKKFFSGNYDLVILDIEMPG-ISGL---EVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHccCCCCeEEEEEC
Confidence 334455567888888765322 1111 23344444333377777754
No 304
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.84 E-value=1.9e+02 Score=19.40 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=22.7
Q ss_pred HHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCC
Q 030298 122 ICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGK 171 (179)
Q Consensus 122 I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~ 171 (179)
.++......+|++++...-.+ ..++ .....+-...+++|++++-..
T Consensus 40 al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 40 FLEHRRPEQHGCLVLDMRMPG-MSGI---ELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHHHCCTTSCEEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHhhhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 334445566777777755321 1111 233444433333777777543
No 305
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=21.80 E-value=83 Score=24.33 Aligned_cols=13 Identities=15% Similarity=0.255 Sum_probs=8.5
Q ss_pred CEEEEEEEecCCc
Q 030298 70 DTIHLVHAVSSVQ 82 (179)
Q Consensus 70 ~~l~~v~v~~~~~ 82 (179)
..+.++|+.+...
T Consensus 19 ~~mrilhiSD~Hl 31 (386)
T 3av0_A 19 SHMMFVHIADNHL 31 (386)
T ss_dssp CCCEEEEECCCCB
T ss_pred CCeEEEEEccCCC
Confidence 3577888877543
No 306
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=21.73 E-value=2.4e+02 Score=22.54 Aligned_cols=28 Identities=4% Similarity=-0.218 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 52 PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 52 ~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
..+++.+++|.++|...+.+++++|=..
T Consensus 208 ~~~eRiar~AFe~A~~r~kkVt~v~KaN 235 (427)
T 3us8_A 208 ESITEFARASFNYGLQRKVPVYLSTKNT 235 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECcc
Confidence 5678889999999988788888887533
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.71 E-value=3e+02 Score=21.78 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=42.0
Q ss_pred ecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH---HHHHH
Q 030298 48 VDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA---KVICK 124 (179)
Q Consensus 48 vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~---~~I~~ 124 (179)
..++-.+..+...|..++.. +.++.++.+.... .. ..+.+..+ .+..++++.......++. ...++
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r---~a---a~~qL~~~----~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQR---PA---AREQLRLL----GEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSC---HH---HHHHHHHH----HHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccC---ch---hHHHHHHh----cccCCccEEecCCCCCHHHHHHHHHH
Confidence 34445555566666666543 6777776552211 11 11112221 122345543211112443 33445
Q ss_pred HHHHcCCcEEEEeeCCCCC
Q 030298 125 EAERLKPAAVVIGSRGRGL 143 (179)
Q Consensus 125 ~a~~~~~dliV~G~~~~~~ 143 (179)
.++..++|+|++.+.++..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~ 193 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQ 193 (425)
T ss_dssp HHHHTTCSEEEEECCCCSS
T ss_pred HHHHCCCCEEEEcCCCccc
Confidence 5555789999999876544
No 308
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.66 E-value=1.9e+02 Score=19.39 Aligned_cols=35 Identities=3% Similarity=0.007 Sum_probs=14.8
Q ss_pred hhcCceeEEEEecCChHHHHHHHH---HHcCCcEEEEe
Q 030298 103 DVAMVRTKARIVEGDAAKVICKEA---ERLKPAAVVIG 137 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~I~~~a---~~~~~dliV~G 137 (179)
...|.++......+|-.+.|.+.. .+.++|+||..
T Consensus 39 ~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 39 QDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp --CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 334555544444444333333222 22247877664
No 309
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.64 E-value=1.2e+02 Score=20.21 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=14.8
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV 75 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v 75 (179)
+.+++.+..+..+...++ +++.|+..|+++.++
T Consensus 97 ~d~vI~iS~sG~t~~~~~-~~~~ak~~g~~vi~I 129 (183)
T 2xhz_A 97 QDVVIAISNSGESSEITA-LIPVLKRLHVPLICI 129 (183)
T ss_dssp TCEEEEECSSSCCHHHHH-HHHHHHTTTCCEEEE
T ss_pred CCEEEEEeCCCCCHHHHH-HHHHHHHCCCCEEEE
Confidence 345555555544444433 224444444444444
No 310
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=21.54 E-value=2.4e+02 Score=20.59 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=45.6
Q ss_pred CCeEEEEecCCcchHHH-HHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecCChH
Q 030298 41 GRDILIAVDHGPNSKHA-FDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEGDAA 119 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~a-l~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (179)
..++.|++|+....... .+++..+....+..+-++-+--. .........-+.+++..+. .. .+..+-.-...+|..
T Consensus 13 ~~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kvg~~-lf~~~G~~g~~~l~~l~~~-~~-~g~~VflDlK~~DI~ 89 (255)
T 3qw3_A 13 RSLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNAA-FFEFFGAEGWAALSEVIRA-VP-AGIPVVLDAKRGDIA 89 (255)
T ss_dssp TCCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBHH-HHHTTTHHHHHHHHHHHHH-SC-TTCCBEEEEEECCCH
T ss_pred CCCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEEcHH-HHHhcCHHHHHHHHHHHHH-hc-CCCeEEEEeecCCcH
Confidence 36799999988654322 56666666665544333333110 0000001111233332222 11 345554444456655
Q ss_pred HHHHHHH----HHcCCcEEEEeeC
Q 030298 120 KVICKEA----ERLKPAAVVIGSR 139 (179)
Q Consensus 120 ~~I~~~a----~~~~~dliV~G~~ 139 (179)
.+...++ ...++|++-+-..
T Consensus 90 nTv~~~a~~~~~~lg~d~vTvh~~ 113 (255)
T 3qw3_A 90 DTADAYATSAFKHLNAHAITASPY 113 (255)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHHHHHHHHHHHHcCCCEEEEccc
Confidence 5443333 2456787777443
No 311
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=21.27 E-value=86 Score=20.65 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=51.5
Q ss_pred EEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEec--C-C--h
Q 030298 44 ILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVE--G-D--A 118 (179)
Q Consensus 44 Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--g-~--~ 118 (179)
+|+-+.+. .-..+++.|..+... |-+ ++.- . . ....++..|++++..... | + .
T Consensus 27 vliSv~d~-dK~~l~~~a~~l~~l-Gf~--i~AT-~-----G------------Ta~~L~~~Gi~v~~v~k~~egg~~~~ 84 (143)
T 2yvq_A 27 ILIGIQQS-FRPRFLGVAEQLHNE-GFK--LFAT-E-----A------------TSDWLNANNVPATPVAWPSQEGQNPS 84 (143)
T ss_dssp EEEECCGG-GHHHHHHHHHHHHTT-TCE--EEEE-H-----H------------HHHHHHHTTCCCEEECCGGGC-----
T ss_pred EEEEeccc-chHHHHHHHHHHHHC-CCE--EEEC-c-----h------------HHHHHHHcCCeEEEEEeccCCCcccc
Confidence 77777653 334567777666553 443 2221 1 0 111223457887754322 2 2 0
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEE
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPII 166 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVl 166 (179)
...|.+..++.++|+||--..+.... .--|...++..-... +|++
T Consensus 85 ~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~-IP~~ 129 (143)
T 2yvq_A 85 LSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSG-IPLL 129 (143)
T ss_dssp CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTT-CCEE
T ss_pred cccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhC-CCeE
Confidence 03699999999999999887652111 111333344444455 6664
No 312
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=21.26 E-value=1e+02 Score=24.93 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCC----CCccc---cccCchhHHHHhcCCCCcE--EEEcCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGR----GLIQS---VLQGSVGEYCLHHCKTAPI--IVVPGKE 172 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~----~~~~~---~~~gs~~~~ll~~~~~~pV--lvv~~~~ 172 (179)
...+++++.|++.+.-+|+-.+.+. ++... ..+......++.+.. +|+ +++..++
T Consensus 32 e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~-vPv~pV~LhlDH 95 (450)
T 3txv_A 32 LVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIE-FPREKILLGGDH 95 (450)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTT-CCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcC-cCcccEEEECCC
Confidence 5799999999999988888777542 22221 234567788888888 996 5554433
No 313
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=21.05 E-value=2.3e+02 Score=20.17 Aligned_cols=105 Identities=19% Similarity=0.166 Sum_probs=53.0
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCC-CEEEEEEEecCCchhhHHHHHHHHHHHHHHHHhhhcCceeEEEEecC---C
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLA-DTIHLVHAVSSVQNQIVYDMSQGLMEKLAIEAMDVAMVRTKARIVEG---D 117 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~-~~l~~v~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g---~ 117 (179)
.+..+++.+...-....+...+ ...+ .+++++++.+.--.....+.....+++ .++......-.++...+ +
T Consensus 33 ~~~~l~LsgGstp~~~y~~L~~--~~idw~~v~~f~~DEr~vp~~~~~Sn~~~~~~---~ll~~~~~~~~~~~~~~~~~~ 107 (226)
T 3lwd_A 33 ERALLVVSGGSTPKPFFTSLAA--KALPWARVDVTLADERWVTADDADSNARLVRE---TLLVGPAAEACFHPLTTDDDT 107 (226)
T ss_dssp SCEEEEECCSSTTHHHHHHHHT--SCSCGGGEEEEESEEESSCTTSTTCHHHHHHH---HTSSGGGGGSEEECSCCSSSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHh--cCCCchhEEEEEeeecccCCCChHHHHHHHHH---HhcCCCCcHHhEecCCCCcCC
Confidence 5677777766555555554433 2223 478888887643111111122222222 22332112233343333 5
Q ss_pred hHHHHHHHHHH---c--CCcEEEEeeCCCCCccccccCc
Q 030298 118 AAKVICKEAER---L--KPAAVVIGSRGRGLIQSVLQGS 151 (179)
Q Consensus 118 ~~~~I~~~a~~---~--~~dliV~G~~~~~~~~~~~~gs 151 (179)
+.++..+|.+. . ++|++++|-..-+-....+-|+
T Consensus 108 ~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGH~as~fPg~ 146 (226)
T 3lwd_A 108 PEAGVETVAERLESLPWPASAVILGMGGDGHTASLFPDS 146 (226)
T ss_dssp HHHHHHHHHHHHHTSCSSBSEEEECCCTTSCBTTBCTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECcCCCCCeeecCCCC
Confidence 66666666432 2 6899999987655555555565
No 314
>1g0y_I Antagonist peptide AF10847; immunoglobulin, immune system; 3.00A {Homo sapiens} SCOP: k.19.1.1
Probab=21.01 E-value=29 Score=15.40 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=13.1
Q ss_pred chhhhhhhhhhcccccc
Q 030298 5 KEEEEVYSWREVNLPAL 21 (179)
Q Consensus 5 ~~~~~~~~~r~~~~P~~ 21 (179)
-|++|-|-|.+-..|..
T Consensus 6 weesnayywqpyalpl~ 22 (26)
T 1g0y_I 6 WEESNAYYWQPYALPLX 22 (26)
T ss_dssp HHHHHHHEECTTCCCC-
T ss_pred eecccceeecccccccc
Confidence 37889999988887764
No 315
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=20.82 E-value=1.5e+02 Score=22.22 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=4.6
Q ss_pred EEEEEecCC
Q 030298 73 HLVHAVSSV 81 (179)
Q Consensus 73 ~~v~v~~~~ 81 (179)
.++|+.+..
T Consensus 2 kilh~sD~H 10 (333)
T 1ii7_A 2 KFAHLADIH 10 (333)
T ss_dssp EEEEECCCC
T ss_pred EEEEEcccC
Confidence 355665543
No 316
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=20.82 E-value=83 Score=24.78 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCCCC
Q 030298 117 DAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKEAG 174 (179)
Q Consensus 117 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~~~ 174 (179)
.-.+.+.+++++.++|-||.-....=....+....+.+.+.+..+ +|+|.+-.+..+
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~g-IP~l~ie~D~~~ 377 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETG-LPYAGFDGDQAD 377 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHC-CCEEEEEECSSC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcC-CCEEEEeccCCC
Confidence 457788889999999999987664322222222233445557788 999999765554
No 317
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.70 E-value=2.4e+02 Score=20.13 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=36.1
Q ss_pred HHhhhcCceeEEEEecC--Ch--HHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEE
Q 030298 100 EAMDVAMVRTKARIVEG--DA--AKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVV 168 (179)
Q Consensus 100 ~~~~~~~~~~~~~~~~g--~~--~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv 168 (179)
+.++..|+++.+....+ +. ....++.+...++|-||+.......... ..+. +. .. +||+++
T Consensus 29 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~~-~~-~~-iPvV~~ 93 (304)
T 3o1i_D 29 SEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLKS-WV-GN-TPVFAT 93 (304)
T ss_dssp HHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THHH-HT-TT-SCEEEC
T ss_pred HHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHHH-Hc-CC-CCEEEe
Confidence 33444567766555555 53 3345566666789999988654332222 2233 34 77 999988
No 318
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.62 E-value=1.5e+02 Score=19.97 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=24.3
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
.+.+++.+..+..+...++ +++.|+..|+++.++.-
T Consensus 116 ~~d~vI~iS~SG~t~~~~~-~~~~ak~~g~~vI~IT~ 151 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILA-AFREAKAKGMTCVGFTG 151 (198)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCCCeEEEEEC
Confidence 3667888887777766655 44677777777666654
No 319
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.59 E-value=83 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=22.6
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEE
Q 030298 40 RGRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLV 75 (179)
Q Consensus 40 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v 75 (179)
.+++|++++|.+.....+.+.+...... + ++.++
T Consensus 198 ~~~~iil~~D~D~aG~~aa~~~~~~l~~-~-~v~~~ 231 (255)
T 1nui_A 198 QFEQIILMFDMDEAGRKAVEEAAQVLPA-G-KVRVA 231 (255)
T ss_dssp TBSCEEEECCSSHHHHHHHHHHHHHSCT-T-TEEEC
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhccC-C-CEEEE
Confidence 3578888888887777777766666543 3 44433
No 320
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.30 E-value=1.2e+02 Score=20.93 Aligned_cols=37 Identities=8% Similarity=0.197 Sum_probs=27.6
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEEe
Q 030298 41 GRDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHAV 78 (179)
Q Consensus 41 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v~ 78 (179)
.+.++|.+..+..+...++.+ +.|+..|+++.++.-.
T Consensus 89 ~~DvvI~iS~SG~t~~~i~~~-~~ak~~g~~vI~IT~~ 125 (200)
T 1vim_A 89 DQDVLVGISGSGETTSVVNIS-KKAKDIGSKLVAVTGK 125 (200)
T ss_dssp TTCEEEEECSSSCCHHHHHHH-HHHHHHTCEEEEEESC
T ss_pred CCCEEEEEeCCCCcHHHHHHH-HHHHHCCCeEEEEECC
Confidence 367889999888887776644 7777778887777653
No 321
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.27 E-value=1.7e+02 Score=18.27 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCcEEEEeeC
Q 030298 121 VICKEAERLKPAAVVIGSR 139 (179)
Q Consensus 121 ~I~~~a~~~~~dliV~G~~ 139 (179)
..++......+|+|++...
T Consensus 49 ~al~~~~~~~~dlvl~D~~ 67 (143)
T 3m6m_D 49 QVLDAMAEEDYDAVIVDLH 67 (143)
T ss_dssp HHHHHHHHSCCSEEEEESC
T ss_pred HHHHHHhcCCCCEEEEeCC
Confidence 3444555667788887765
No 322
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.27 E-value=2.1e+02 Score=19.34 Aligned_cols=35 Identities=9% Similarity=-0.031 Sum_probs=16.5
Q ss_pred hhcCceeEEEEecCChHHH----HHHHHHHcCCcEEEEe
Q 030298 103 DVAMVRTKARIVEGDAAKV----ICKEAERLKPAAVVIG 137 (179)
Q Consensus 103 ~~~~~~~~~~~~~g~~~~~----I~~~a~~~~~dliV~G 137 (179)
...|.++......+|-.+. |.+.+++.++|+||..
T Consensus 38 ~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 38 QEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 3345665544444443333 3333332257877665
No 323
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.16 E-value=1.3e+02 Score=20.06 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=24.6
Q ss_pred CeEEEEecCCcchHHHHHHHHHHhccCCCEEEEEEE
Q 030298 42 RDILIAVDHGPNSKHAFDWALIHLCRLADTIHLVHA 77 (179)
Q Consensus 42 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~~v~v 77 (179)
+.+++.+..+..+...++ +++.|+..|+++.++.-
T Consensus 83 ~d~vi~iS~sG~t~~~~~-~~~~ak~~g~~vi~IT~ 117 (180)
T 1jeo_A 83 DDLLILISGSGRTESVLT-VAKKAKNINNNIIAIVC 117 (180)
T ss_dssp TCEEEEEESSSCCHHHHH-HHHHHHTTCSCEEEEES
T ss_pred CCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEeC
Confidence 668888888877776665 44777777777766654
No 324
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=20.16 E-value=1.6e+02 Score=18.02 Aligned_cols=49 Identities=4% Similarity=0.121 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHH-cCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEc
Q 030298 116 GDAAKVICKEAER-LKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 116 g~~~~~I~~~a~~-~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
.+..+ .++..+. ..+|++++...-.+ ...+ ...+.+-...+++|++++-
T Consensus 46 ~~~~~-al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 46 PSGSA-FFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp SSHHH-HHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred CCHHH-HHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 34433 3345555 67899998865322 1111 2334444333338888876
No 325
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=20.11 E-value=2.6e+02 Score=20.41 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=38.6
Q ss_pred HHHhhhcCceeEEEEecCChHHHHHHHHHHcCCcEEEEeeCCCCCccccccCchhHHHHhcCCCCcEEEEcCCC
Q 030298 99 IEAMDVAMVRTKARIVEGDAAKVICKEAERLKPAAVVIGSRGRGLIQSVLQGSVGEYCLHHCKTAPIIVVPGKE 172 (179)
Q Consensus 99 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~ll~~~~~~pVlvv~~~~ 172 (179)
...++..|..+. ....+..+++ +.+....+|+|++...-.+...++ .+.+.|-.... +||+++....
T Consensus 177 ~~~L~~~g~~v~--~~a~~g~eAl-~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~-~piI~lT~~~ 243 (286)
T 3n0r_A 177 EALVRELGHDVT--DIAATRGEAL-EAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMD-VPVIFITAFP 243 (286)
T ss_dssp HHHHHHTTCEEE--EEESSHHHHH-HHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTT-CCEEEEESCG
T ss_pred HHHhhccCceEE--EEeCCHHHHH-HHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCC-CCEEEEeCCH
Confidence 344444565542 1344555555 445567899999998744223322 23455554456 9999997653
No 326
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=20.10 E-value=1.2e+02 Score=20.61 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=22.4
Q ss_pred eEEEEecCC---cchHHHHHHHHHHhccCCCEEEEEEEec
Q 030298 43 DILIAVDHG---PNSKHAFDWALIHLCRLADTIHLVHAVS 79 (179)
Q Consensus 43 ~Ilv~vd~s---~~s~~al~~a~~la~~~~~~l~~v~v~~ 79 (179)
+|++-.... ..+..+++.+.+.+. .+.++.++.+.+
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 666655332 346666776666666 577888877654
No 327
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=20.04 E-value=2e+02 Score=20.25 Aligned_cols=49 Identities=8% Similarity=-0.046 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeCCCCCc-cccccCchhHHHHhcCCCCcEEEEc
Q 030298 119 AKVICKEAERLKPAAVVIGSRGRGLI-QSVLQGSVGEYCLHHCKTAPIIVVP 169 (179)
Q Consensus 119 ~~~I~~~a~~~~~dliV~G~~~~~~~-~~~~~gs~~~~ll~~~~~~pVlvv~ 169 (179)
....++.+.+.++|.|++-...+... ..+ --....++.+..+ +||+..-
T Consensus 151 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~-ipvia~G 200 (244)
T 2y88_A 151 LWDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTD-APVIASG 200 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCS-SCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCC-CCEEEEC
Confidence 34556667778899877665444322 222 2235567777777 9988753
Done!