BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030299
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/148 (69%), Positives = 124/148 (83%), Gaps = 7/148 (4%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQVLS
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R++Y K PD + IVA+DLQ MAP++GV+Q++GDIT T++ +I HFDG A
Sbjct: 61 RRIYGDGK-DPDVK------IVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLA 113
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILA 148
DL++ DGAPDVTGLHD+D + QSQLIL+
Sbjct: 114 DLIISDGAPDVTGLHDIDFYGQSQLILS 141
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 118/149 (79%), Gaps = 9/149 (6%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY E IVAIDLQPMAPI GVIQ+QGDIT+ TA VI+HF G K+
Sbjct: 61 KRLY---------EEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKS 111
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
D+V+CDGAPDVTG+H +DEF+Q++LILA
Sbjct: 112 DIVICDGAPDVTGIHSLDEFMQAELILAA 140
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 119/149 (79%), Gaps = 10/149 (6%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQVLS
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
+K+ +G +VA+DLQ MAP+ GV+Q+QGDIT TA+ +I+HF GC A
Sbjct: 61 QKI---------GGQGS-GHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPA 110
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
DLVVCDGAPDVTGLHD+DE++Q+QL+LA
Sbjct: 111 DLVVCDGAPDVTGLHDVDEYMQAQLLLAA 139
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWSQVLS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
R+L S + E P+IVA+DLQPMAPI+GV +Q DIT+ T +++ HF A
Sbjct: 61 RELLKNIDTSIAADEK--PMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPA 118
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
DLVV DGAPDVTGLHD+DE++Q+Q++LA
Sbjct: 119 DLVVSDGAPDVTGLHDLDEYIQAQILLAA 147
>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1
OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1
Length = 302
Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/150 (64%), Positives = 116/150 (77%), Gaps = 4/150 (2%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQVLS
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC-K 119
RKLY + E I+A+DLQ MAPI G++Q+QGDIT TAE +I HF G K
Sbjct: 61 RKLYDTCET---DDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEK 117
Query: 120 ADLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
A LVVCDGAPDVTG+H+MDE++Q QL++A
Sbjct: 118 AQLVVCDGAPDVTGVHEMDEYMQHQLLVAA 147
>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1
Length = 320
Score = 192 bits (489), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 97/158 (61%), Positives = 119/158 (75%), Gaps = 5/158 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60
MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + EG+ R VDLCAAPGSWSQVL+
Sbjct: 1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLA 60
Query: 61 RKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120
++LY P L P+ RE I+A+DLQ MAPIEGV Q++ DI+ TAE +I F G KA
Sbjct: 61 KRLYEP--LPPEEREK--VKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKA 116
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLIL-AVSIQFFIYE 157
+VV DGAPD TG+HD D +VQ +L+L A+SI FI E
Sbjct: 117 QIVVSDGAPDSTGMHDFDSYVQGELLLSALSISTFILE 154
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 117/151 (77%), Gaps = 6/151 (3%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE--GVKRVVDLCAAPGSWSQV 58
MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+ + +KRVVDLCAAPGSWSQV
Sbjct: 1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGC 118
LSRKL+ SP S + D IV++DLQPM+PI V +Q DIT+ +T +++ F
Sbjct: 61 LSRKLF---DESPSSDKEDRK-IVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNE 116
Query: 119 KADLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
KAD V DGAPDVTGLHD+DE+VQ QLI++
Sbjct: 117 KADFVCSDGAPDVTGLHDLDEYVQQQLIMSA 147
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 88/135 (65%), Gaps = 15/135 (11%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD++D YYRKAKEEG+RARSA+KL QI+++F+I RVVDL AAPG W QV
Sbjct: 2 ARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+RE ++V +DL+ + P+EG++ +QGDIT T E + G +AD+V+
Sbjct: 56 --------ARELSGGIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAAL-GGQADVVI 106
Query: 125 CDGAPDVTGLHDMDE 139
D AP+++G+ D+D
Sbjct: 107 SDAAPNLSGIWDVDH 121
>sp|Q4FMX1|RLME_PELUB Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter
ubique (strain HTCC1062) GN=rlmE PE=3 SV=1
Length = 203
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 16/171 (9%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
++ KRDIY R+++ +G+RARSA+KL++IDE+F IF+ V+DL A+PGSWSQ +SR +
Sbjct: 12 NKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTV- 70
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+ G L V+IDL+ M IE IQ++GD T+ + E + F K D+VV
Sbjct: 71 ---------KSGRL---VSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFK-SKVDVVV 117
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAVSIQFFIYELVFCLRQLLQYVILDGSY 175
D A + TG+ D+D + LA+ F E++ + + + L S+
Sbjct: 118 SDMAVNTTGIKDIDAIYTGE--LAMEAMNFSKEMLVKEGRFVSKIFLGSSF 166
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 90/157 (57%), Gaps = 15/157 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV + +PA+
Sbjct: 13 DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE--CMPAQ- 69
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
LIV +DL P+ PI VI Q DIT + + H KAD V+ DGAP
Sbjct: 70 ---------SLIVGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAP 120
Query: 130 DVTGLHDMDEFVQSQLI---LAVSIQFFIYELVFCLR 163
+V D F Q++L+ L ++ +F + F +
Sbjct: 121 NVGTAWVQDAFSQAELVLESLKLATEFLVEGGTFVTK 157
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 107 bits (268), Expect = 3e-23, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 86/145 (59%), Gaps = 12/145 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +Y+ AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV
Sbjct: 6 KHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQV---- 61
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
A++ P S LIV +DL P+ PI VI Q DIT + + +H KAD
Sbjct: 62 ---AAEVMPVSS-----LIVGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADT 113
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F Q++L L
Sbjct: 114 VLHDGAPNVGTAWVQDSFNQAELTL 138
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 14/129 (10%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAK---- 57
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+LS ++ +DLQ +APIEGV +QGDI T + +IR AD+V+
Sbjct: 58 ---QLSGGK-------VLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVL 107
Query: 125 CDGAPDVTG 133
CD AP+++G
Sbjct: 108 CDAAPNLSG 116
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 15/164 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW QV +
Sbjct: 6 KHGKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAE- 64
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
+P + +I+ +DL P+ PI VI Q DIT + + +H KAD
Sbjct: 65 -CMPTQ----------SIIIGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADT 113
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL---AVSIQFFIYELVFCLR 163
V+ DGAP+V D F Q++L+L ++ +F + F +
Sbjct: 114 VLHDGAPNVGTAWVQDAFSQAELVLQSMKLATEFLVEGGTFVTK 157
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 106 bits (265), Expect = 8e-23, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
KL P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------KLCPVNS-----LIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QSQL L
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSQLTL 140
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 106 bits (264), Expect = 9e-23, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K + + D YYR AKE+G+RARS+FK++QI++++ F E K V+DLCAAPGSW QV S
Sbjct: 7 KHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
+L P + LI+ D+ P+ P+ VI Q DIT + + ++ KAD
Sbjct: 66 ------QLCPVNS-----LIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QS+L+L
Sbjct: 115 TVMHDGAPNVGMAWAQDAFTQSELVL 140
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 105 bits (263), Expect = 1e-22, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
KL P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------KLCPVNS-----LIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QS L L
Sbjct: 115 TVLHDGAPNVGLGWAQDAFTQSHLTL 140
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 12/146 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
+V+ DGAP+V D + Q+ L L
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTL 138
>sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus GN=Ftsj3 PE=1
SV=1
Length = 838
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 12/146 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
+V+ DGAP+V D + Q+ L L
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTL 138
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 7 KHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
+L P + LI+ +D+ P+ P+ VI Q DIT + H KAD
Sbjct: 66 ------QLCPINS-----LIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QSQL L
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSQLTL 140
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 12/146 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQV--- 61
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 62 ----AAKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
+V+ DGAP+V D + Q+ L L
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTL 138
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 12/146 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSR 61
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W QV
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVA-- 62
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
AK P S LIV +DL P+ P+ V+ +Q DIT R + + + K D
Sbjct: 63 -----AKFMPVS-----SLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVD 112
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
+V+ DGAP+V D + Q+ L L
Sbjct: 113 VVLNDGAPNVGASWVHDAYSQAHLTL 138
>sp|C5CKU4|RLME_VARPS Ribosomal RNA large subunit methyltransferase E OS=Variovorax
paradoxus (strain S110) GN=rlmE PE=3 SV=1
Length = 222
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 9/151 (5%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y + A EG+RAR+A+KL +IDE + + + VVDL + PG+WSQ L R++
Sbjct: 21 DPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRRM------ 74
Query: 70 SPD-SREGDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
SP+ + G+L I+A+D+ PM PIEGV +QGD A E V+ G KADLVV D
Sbjct: 75 SPEGAAAGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQVLGVLAGRKADLVVSDM 134
Query: 128 APDVTGLHDMDEFVQSQLILAVSIQFFIYEL 158
AP+++G+H D + LI ++I F + L
Sbjct: 135 APNLSGIHSADAARVAHLI-ELAIDFAQHHL 164
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 15/150 (10%)
Query: 1 MGKASR---DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57
MGK S+ +RD +Y AKE G+R+RSAFKLLQ++ +F + + ++DLCAAPG W Q
Sbjct: 1 MGKKSKVGKSRRDKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQ 60
Query: 58 VLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDG 117
V S+ ++P L++ +DL P+ PI V+ +Q DIT + + + +
Sbjct: 61 VASK--FMPVS----------SLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQT 108
Query: 118 CKADLVVCDGAPDVTGLHDMDEFVQSQLIL 147
K D+V+ DGAP+V D + Q+ L L
Sbjct: 109 WKVDVVLNDGAPNVGASWVHDAYSQANLTL 138
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 14/129 (10%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YYR+AKEEG+R+R++FKL QI+E +I VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQV------ 55
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
++E ++ +DLQ + PIEGV +QG+I T + +I+ AD+V+
Sbjct: 56 --------AKELSGGKVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVL 107
Query: 125 CDGAPDVTG 133
CD AP+++G
Sbjct: 108 CDAAPNLSG 116
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 103 bits (258), Expect = 5e-22, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 12/145 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +Y+ AKE+G+RAR+AFKL+Q+++++ E K +DLCAAPGSW QV +
Sbjct: 6 KHGKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAET 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
+P +I+ +DL P+ PI VI Q DIT + + H KAD+
Sbjct: 66 --MPTN----------SIIIGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADV 113
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D + Q++L L
Sbjct: 114 VLHDGAPNVGTAWVQDSYNQAELAL 138
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 103 bits (256), Expect = 8e-22, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ PM P+ VI Q DIT + + KAD
Sbjct: 66 ------NLCPVNS-----LIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QS L L
Sbjct: 115 TVLHDGAPNVGLNWVQDAFTQSHLTL 140
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 14/129 (10%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W QV
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAK---- 57
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+LS ++ +DLQ + PIEGV +QGDI T + +I+ AD+V+
Sbjct: 58 ---QLSGGK-------VLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVGEKGADVVL 107
Query: 125 CDGAPDVTG 133
CD AP+++G
Sbjct: 108 CDAAPNLSG 116
>sp|Q2GB53|RLME_NOVAD Ribosomal RNA large subunit methyltransferase E OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=rlmE PE=3 SV=1
Length = 222
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
SR D Y +KAK EGWR+R+AFKL+++DE+F + +G KRVVDL APG WSQV+ +K
Sbjct: 27 SRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPGGWSQVVRKK-- 84
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+P ++ IV IDL P PIEGV + D E + DG DLV+
Sbjct: 85 -----APAAK------IVGIDLLPTEPIEGVTIFEMDFMADEAPEALQSALDGP-PDLVL 132
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAVSIQFFIYELV 159
D A + G H + +++ ++ ++ F + L
Sbjct: 133 SDMAANTVG-HKQTDHLRTMGLVETAVDFAVQTLA 166
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W QV +
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P LI+ +DL + P+ V DIT + + +H KADL
Sbjct: 66 -YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADL 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F Q++L+L
Sbjct: 115 VLHDGAPNVGSAWVQDAFTQNELVL 139
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W QV +
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P LI+ +DL + P+ V DIT + + +H KADL
Sbjct: 66 -YMPKG----------SLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADL 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F Q++L+L
Sbjct: 115 VLHDGAPNVGSAWVQDAFTQNELVL 139
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 82/146 (56%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 8 KNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS- 66
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
L P + LI+ +D+ PM + VI Q DIT + + KAD
Sbjct: 67 ------NLCPVNS-----LIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKAD 115
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QS L L
Sbjct: 116 TVLHDGAPNVGLSWAQDAFTQSHLTL 141
>sp|O27801|RLME_METTH Ribosomal RNA large subunit methyltransferase E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rlmE PE=3 SV=1
Length = 211
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 17/153 (11%)
Query: 1 MGK--ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQV 58
MGK + KRD YYR AK+E +R+R+++KLLQ++ ++ + + RV+DL AAPG WSQV
Sbjct: 1 MGKRWQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQV 60
Query: 59 LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFD 116
K+ G+ L+VA+DLQ + P E ++GD T+ + +IR
Sbjct: 61 ALDKV------------GEEGLVVAVDLQRIKGFPAENFRAIRGDFTDPEVKDKIIREL- 107
Query: 117 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
G +AD+V+ D AP ++G+ D+D L+ V
Sbjct: 108 GGRADVVISDAAPSLSGIRDIDHLRSVDLVENV 140
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 15/164 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y AKE+G+R+R+AFKL+Q++++FN E + +DLCAAPG W QV S+
Sbjct: 8 KTAKGRLDKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASK- 66
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
++PA LIV +DL P+ PI I DI + + + + + KAD+
Sbjct: 67 -FMPAN----------SLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQILKDWKADI 115
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLILA---VSIQFFIYELVFCLR 163
V+ DGAP+V D + QS+L L ++++F F +
Sbjct: 116 VIHDGAPNVGTAWVQDAYAQSELTLQSLRLAVEFLTAGGTFVTK 159
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 82/146 (56%), Gaps = 13/146 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQVLSR 61
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW QV S
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVAS- 65
Query: 62 KLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121
+L P + LI+ +D+ P+ + I Q DIT + H KAD
Sbjct: 66 ------QLCPINS-----LIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKAD 114
Query: 122 LVVCDGAPDVTGLHDMDEFVQSQLIL 147
V+ DGAP+V D F QS L L
Sbjct: 115 TVLHDGAPNVGLGWVQDAFTQSHLTL 140
>sp|Q2NHD6|RLME_METST Ribosomal RNA large subunit methyltransferase E OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=rlmE PE=3 SV=1
Length = 206
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%), Gaps = 14/149 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
KA DK + YY+ AK++ +R+R+++KL Q+D+++++ + VVDL AAPG WSQV++
Sbjct: 5 KAKHDK-EHYYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAET 63
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPI--EGVIQVQGDITNARTAEVVIRHFDGCKA 120
+ EG I+++DL+ + PI E V+GD T T +++I DG KA
Sbjct: 64 I---------GEEGK-GQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDG-KA 112
Query: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAV 149
D+V+ D AP +TG+ D+D F L +AV
Sbjct: 113 DVVLSDAAPKLTGIKDIDNFRAYDLSMAV 141
>sp|Q12WR3|RLME_METBU Ribosomal RNA large subunit methyltransferase E OS=Methanococcoides
burtonii (strain DSM 6242) GN=rlmE PE=3 SV=1
Length = 267
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 81/134 (60%), Gaps = 14/134 (10%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+RD+RD YY +AK+EG+R+R+A+KL QI+E+ + + +VDL AAPG W L
Sbjct: 2 ARDRRDTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGW-------LE 54
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124
+ K+S IV +DL+ + IEGV ++GDIT+ T + +I AD+V+
Sbjct: 55 VAKKISGGK-------IVGVDLRRIKEIEGVETIKGDITSDETIKKIIELVGEGGADVVI 107
Query: 125 CDGAPDVTGLHDMD 138
CD AP+++G +D
Sbjct: 108 CDAAPNLSGNWSLD 121
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 15/164 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y+ AKE+G+R+R+AFKL+Q++++++ E K ++DLCAAPG W QV S+
Sbjct: 7 KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
P S LIV +DL P+ PI DIT+ + + + KAD+
Sbjct: 66 -----TCKPGS------LIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADV 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL---AVSIQFFIYELVFCLR 163
V+ DGAP+V D + Q+QL+L ++ +F + F +
Sbjct: 115 VLHDGAPNVGSAWLQDAYGQAQLVLMSMKLACEFLVAGGTFVTK 158
>sp|Q2YBT1|RLME_NITMU Ribosomal RNA large subunit methyltransferase E OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=rlmE
PE=3 SV=1
Length = 206
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 20/156 (12%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D + R+AK+EG+R+R+A+KL++I E ++F+ VVDL AAPG WSQV + KL +
Sbjct: 17 DFFVRQAKKEGYRSRAAYKLMEIAERDHLFKPGMTVVDLGAAPGGWSQVAAEKLKGKGR- 75
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129
VA+D+ MAPI GV +QGD A + DLV+CD +P
Sbjct: 76 -----------AVALDILEMAPISGVTFIQGDFREASVLAELKEQLKDLPVDLVICDMSP 124
Query: 130 DVTGLHDMDEFVQSQLILAVSIQFFIYELVFCLRQL 165
++TG+ +D+ + L FC QL
Sbjct: 125 NITGIRVIDQ--------TRGMHLAELALEFCTEQL 152
>sp|A1TQF0|RLME_ACIAC Ribosomal RNA large subunit methyltransferase E OS=Acidovorax
citrulli (strain AAC00-1) GN=rlmE PE=3 SV=1
Length = 218
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 10/140 (7%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y + A++EG+RAR+A+KL +IDE + + VVDL +APG+WSQ L R++ PA
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAPGAWSQYLRRRM-APAGA 79
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA---DLVVCD 126
+ G L +A+D+ PM PIEGV +QGD R +V+ R + +A D+VV D
Sbjct: 80 AAGQLNGTL---IALDILPMEPIEGVTFLQGDF---REEDVLARLQEAVQARPVDVVVSD 133
Query: 127 GAPDVTGLHDMDEFVQSQLI 146
AP+++G+ +D + LI
Sbjct: 134 MAPNLSGVESVDAVRIAHLI 153
>sp|A8GMD3|RLME_RICAH Ribosomal RNA large subunit methyltransferase E OS=Rickettsia akari
(strain Hartford) GN=rlmE PE=3 SV=1
Length = 227
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 9/148 (6%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y KA+ EG+R+R+A+KLL+I E+F +F ++VDL AAPG WSQV S+ +
Sbjct: 31 RQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLI-- 88
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
K S +S I++IDL + PI GV +Q D T E++I+ DG KAD+V+
Sbjct: 89 --KASDNSLNNK---IISIDLLEIEPIIGVEFLQKDFFEENTEELIIQVLDG-KADIVMS 142
Query: 126 DGAPDVTGLHDMDEFVQSQLILAVSIQF 153
D A + TG H + +++ L+ + +F
Sbjct: 143 DMASNTTG-HKATDHIRTLLLCEQAFEF 169
>sp|A1W8H0|RLME_ACISJ Ribosomal RNA large subunit methyltransferase E OS=Acidovorax sp.
(strain JS42) GN=rlmE PE=3 SV=2
Length = 220
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 94/154 (61%), Gaps = 15/154 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y + A++EG+RAR+A+KL +IDE+ + + VVDL ++PG+WSQ + R +L
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRR------RL 74
Query: 70 SPDSRE-GDLP-LIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA---DLVV 124
SPD G L +I+A+D+ PM PIEGV +QGD R EV+ + +A D+VV
Sbjct: 75 SPDGAAVGQLNGVIIALDILPMEPIEGVTFLQGDF---REEEVLAGLQEAVQARPVDVVV 131
Query: 125 CDGAPDVTGLHDMDEFVQSQLILAVSIQFFIYEL 158
D AP+++G+ +D + LI +++ F ++ L
Sbjct: 132 SDMAPNLSGVESVDAVRIAHLI-ELAVDFAVHHL 164
>sp|Q5NQH8|RLME_ZYMMO Ribosomal RNA large subunit methyltransferase E OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rlmE PE=3 SV=1
Length = 221
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 14/146 (9%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y +KA+ EG+R+R+AFKL+++DE F++ + +R++DL APG WSQV +K
Sbjct: 25 RQLNDPYVQKAQAEGYRSRAAFKLIELDERFSLLKNARRIIDLGIAPGGWSQVARKK--- 81
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+P ++ IV IDL APIEGV Q D T+ + +I G ADLV+
Sbjct: 82 ----APQAK------IVGIDLLEAAPIEGVTIFQNDFTDPEAQKKLIEALGGA-ADLVLS 130
Query: 126 DGAPDVTGLHDMDEFVQSQLILAVSI 151
D A + G D L+ ++
Sbjct: 131 DMAANTIGHAQTDHLRTMALVEEAAV 156
>sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rlmE PE=3 SV=1
Length = 259
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 16/135 (11%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLP 66
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W QV +
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAA------ 56
Query: 67 AKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGCKADLV 123
R G +V +D Q + E G+ V+GD+T T + V +G AD+V
Sbjct: 57 ------ERAGARGKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVV 109
Query: 124 VCDGAPDVTGLHDMD 138
V D APD+TG +D+D
Sbjct: 110 VSDMAPDMTGEYDLD 124
>sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE
PE=3 SV=1
Length = 259
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 16/135 (11%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLP 66
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W QV +
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAA------ 56
Query: 67 AKLSPDSREGDLPLIVAIDLQPMAPIE---GVIQVQGDITNARTAEVVIRHFDGCKADLV 123
R G +V +D Q + E G+ V+GD+T T + V +G AD+V
Sbjct: 57 ------ERAGARGKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVV 109
Query: 124 VCDGAPDVTGLHDMD 138
V D APD+TG +D+D
Sbjct: 110 VSDMAPDMTGEYDLD 124
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 92.0 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 12/145 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRK 62
K ++ + D +Y AKE+G+R+R+AFKL+Q+++++N K +DLCAAPG W QV S+
Sbjct: 7 KLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASK- 65
Query: 63 LYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 122
Y+P + LIV +DL P+ + I + DIT + + + K D+
Sbjct: 66 -YMPVQ----------SLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDV 114
Query: 123 VVCDGAPDVTGLHDMDEFVQSQLIL 147
+ DGAP++ D + Q++L L
Sbjct: 115 CLHDGAPNMGTSWVQDAYQQAELTL 139
>sp|B9LSX2|RLME_HALLT Ribosomal RNA large subunit methyltransferase E OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 /
ACAM 34) GN=rlmE PE=3 SV=1
Length = 269
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 14/132 (10%)
Query: 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAK 68
+D YY K+K++G+RARSA+KL QIDEE N+FE VVDL AAPG W QV + ++
Sbjct: 4 KDEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEEV----- 58
Query: 69 LSPDSREGDLPLIVAIDLQPMAPIE--GVIQVQGDITNARTAEVVIRHFDGCKADLVVCD 126
G+ +V +DLQ + ++ V ++GD+T RT + AD+V+ D
Sbjct: 59 -------GESGTVVGVDLQRIDDLDDHDVETIRGDMTEERTRHYLREAIGERGADVVISD 111
Query: 127 GAPDVTGLHDMD 138
AP++TG + +D
Sbjct: 112 MAPNMTGEYALD 123
>sp|Q9UI43|RRMJ2_HUMAN Putative ribosomal RNA methyltransferase 2 OS=Homo sapiens GN=FTSJ2
PE=1 SV=1
Length = 246
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64
+R RD + + AK E +R RSAFKLL+++E I RV+D AAPG+WSQV +K+
Sbjct: 36 TRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVN 95
Query: 65 LPAKLSPDSREGDLPLIVAIDLQPMAPIEG-VIQVQGDITNARTAEVVIRHFDGCKADLV 123
A P S G ++ +DL + P+EG D+T+ RT++ ++ G +AD++
Sbjct: 96 -AAGTDPSSPVG---FVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVI 151
Query: 124 VCDGAPDVTGLHDMDE 139
+ D AP+ TG D+D
Sbjct: 152 LSDMAPNATGFRDLDH 167
>sp|A8II77|RLME_AZOC5 Ribosomal RNA large subunit methyltransferase E OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=rlmE PE=3 SV=1
Length = 240
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 76/135 (56%), Gaps = 10/135 (7%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYL 65
R D Y +AK EGWR+R+AFKL+++DE+ ++ + R+VDL AAPG WSQV ++K+
Sbjct: 33 RQLNDPYVARAKREGWRSRAAFKLIEMDEKLHVLKRGMRIVDLGAAPGGWSQVAAKKI-- 90
Query: 66 PAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125
+ EG IVAIDL M + GV+ Q D + E + DG KADLV+
Sbjct: 91 ------GAAEGQ-GKIVAIDLLEMDAVTGVMFAQMDFLDPTAPERLFAMLDG-KADLVMS 142
Query: 126 DGAPDVTGLHDMDEF 140
D A + TG D
Sbjct: 143 DMAANTTGHKKTDHL 157
>sp|Q3IT24|RLME_NATPD Ribosomal RNA large subunit methyltransferase E OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=rlmE PE=3
SV=1
Length = 252
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 79/131 (60%), Gaps = 14/131 (10%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPA 67
++D YY +AK++G+R+R+A+KL Q+DE ++ VVDL AAPG W QV +
Sbjct: 3 RKDDYYNRAKQQGYRSRAAYKLKQLDEAADLINEGDTVVDLGAAPGGWLQVANELA---- 58
Query: 68 KLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127
G+ +V +DLQ + PIEGV V+GD+T T E V R G +AD+V+ D
Sbjct: 59 --------GEAGTVVGVDLQRIDPIEGVETVRGDMTEDATREKV-RALVG-EADVVISDM 108
Query: 128 APDVTGLHDMD 138
AP++TG + +D
Sbjct: 109 APNMTGEYSLD 119
>sp|A1VQI6|RLME_POLNA Ribosomal RNA large subunit methyltransferase E OS=Polaromonas
naphthalenivorans (strain CJ2) GN=rlmE PE=3 SV=1
Length = 245
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKL 69
D Y ++A++EG+RAR+AFKL ++DE + + VVDL + PG+WSQ + RKL P
Sbjct: 40 DPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGAWSQYVRRKLS-PTGA 98
Query: 70 SPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVC 125
+ + G I+ +DL PM PIEGV+ +QGD A+ + + K DLV+
Sbjct: 99 AVGALNGR---IIGLDLLPMEPIEGVVFIQGDFREPEVLAKLEQALSTEKGPVKVDLVIS 155
Query: 126 DGAPDVTGLHDMDEFVQSQLILAVSIQF 153
D AP+++G+ D + L+ ++++F
Sbjct: 156 DMAPNLSGIESADAARIAHLV-ELAVEF 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,447,511
Number of Sequences: 539616
Number of extensions: 2483791
Number of successful extensions: 8343
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7438
Number of HSP's gapped (non-prelim): 450
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)