Query 030299
Match_columns 179
No_of_seqs 158 out of 1470
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 11:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1099 SAM-dependent methyltr 100.0 4.5E-43 9.8E-48 286.2 12.4 168 1-172 1-186 (294)
2 COG0293 FtsJ 23S rRNA methylas 100.0 2.4E-41 5.3E-46 273.5 16.9 157 5-173 9-183 (205)
3 KOG4589 Cell division protein 100.0 4E-38 8.7E-43 250.5 13.6 157 5-173 33-208 (232)
4 KOG1098 Putative SAM-dependent 100.0 3E-37 6.5E-42 278.4 11.1 160 1-172 1-181 (780)
5 PRK11188 rrmJ 23S rRNA methylt 100.0 5.8E-30 1.2E-34 208.3 17.1 158 5-174 15-190 (209)
6 PF01728 FtsJ: FtsJ-like methy 100.0 1E-30 2.2E-35 206.7 10.4 142 21-174 1-164 (181)
7 TIGR00438 rrmJ cell division p 99.9 2.7E-22 5.8E-27 159.7 18.0 152 10-173 1-170 (188)
8 KOG3673 FtsJ-like RNA methyltr 99.9 2.3E-24 4.9E-29 192.9 4.0 168 4-173 214-426 (845)
9 PRK11760 putative 23S rRNA C24 99.6 1.7E-15 3.7E-20 131.1 9.8 88 18-128 181-279 (357)
10 COG4106 Tam Trans-aconitate me 99.3 2.5E-12 5.5E-17 105.2 6.3 110 9-151 5-120 (257)
11 COG1189 Predicted rRNA methyla 99.3 1.4E-11 3.1E-16 101.8 9.9 104 17-151 55-165 (245)
12 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.9E-10 4.2E-15 96.5 9.6 93 40-152 70-188 (264)
13 TIGR00478 tly hemolysin TlyA f 99.1 1.7E-10 3.7E-15 95.4 7.0 71 20-104 54-131 (228)
14 PTZ00146 fibrillarin; Provisio 99.1 2.6E-10 5.7E-15 97.3 8.1 73 39-128 130-211 (293)
15 PRK14903 16S rRNA methyltransf 99.1 6.7E-10 1.5E-14 99.4 10.3 94 40-152 236-355 (431)
16 PRK11933 yebU rRNA (cytosine-C 99.0 1E-09 2.2E-14 99.3 10.0 94 40-152 112-231 (470)
17 PF12847 Methyltransf_18: Meth 99.0 1.1E-09 2.3E-14 79.0 7.5 65 41-127 1-78 (112)
18 COG0144 Sun tRNA and rRNA cyto 99.0 2E-09 4.3E-14 94.3 10.1 97 40-152 155-277 (355)
19 PRK14901 16S rRNA methyltransf 99.0 2.3E-09 5E-14 95.9 9.6 80 40-135 251-341 (434)
20 PRK14904 16S rRNA methyltransf 99.0 4.8E-09 1E-13 94.1 10.4 75 40-135 249-334 (445)
21 PRK04266 fibrillarin; Provisio 98.9 4E-09 8.7E-14 87.0 8.5 72 39-128 70-150 (226)
22 COG2230 Cfa Cyclopropane fatty 98.9 2.4E-09 5.3E-14 91.0 7.2 88 28-141 60-159 (283)
23 PF13847 Methyltransf_31: Meth 98.9 4.2E-09 9.2E-14 80.7 7.9 71 40-129 2-83 (152)
24 TIGR02752 MenG_heptapren 2-hep 98.9 1.7E-08 3.6E-13 82.1 11.3 69 40-128 44-123 (231)
25 COG2226 UbiE Methylase involve 98.9 3E-09 6.5E-14 88.5 6.7 66 40-126 50-126 (238)
26 PRK14902 16S rRNA methyltransf 98.9 8.2E-09 1.8E-13 92.5 9.9 76 40-134 249-335 (444)
27 TIGR00563 rsmB ribosomal RNA s 98.9 9.4E-09 2E-13 91.7 9.7 77 40-135 237-325 (426)
28 PRK14103 trans-aconitate 2-met 98.9 5E-09 1.1E-13 87.0 7.2 84 20-129 12-99 (255)
29 PRK10901 16S rRNA methyltransf 98.9 1.5E-08 3.3E-13 90.5 10.7 77 40-135 243-329 (427)
30 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 4.7E-09 1E-13 89.2 7.0 94 40-151 84-203 (283)
31 PF01209 Ubie_methyltran: ubiE 98.9 2.5E-09 5.5E-14 88.6 5.1 69 39-127 45-124 (233)
32 PRK01683 trans-aconitate 2-met 98.8 1.1E-08 2.5E-13 84.6 8.3 86 40-151 30-121 (258)
33 KOG1122 tRNA and rRNA cytosine 98.8 1.6E-08 3.4E-13 89.6 8.2 95 40-152 240-360 (460)
34 TIGR03587 Pse_Me-ase pseudamin 98.8 1.6E-08 3.4E-13 82.1 7.2 75 33-129 35-115 (204)
35 PLN02233 ubiquinone biosynthes 98.8 5.1E-08 1.1E-12 81.7 9.4 70 39-128 71-154 (261)
36 TIGR02072 BioC biotin biosynth 98.7 3.9E-08 8.4E-13 79.2 7.8 86 22-129 16-108 (240)
37 PRK11873 arsM arsenite S-adeno 98.7 6.6E-08 1.4E-12 80.8 9.3 71 39-129 75-156 (272)
38 COG2933 Predicted SAM-dependen 98.7 1.9E-08 4.1E-13 84.8 5.9 85 21-128 184-279 (358)
39 PRK00107 gidB 16S rRNA methylt 98.7 7.5E-08 1.6E-12 77.3 9.1 69 37-127 41-120 (187)
40 PF02353 CMAS: Mycolic acid cy 98.7 2.6E-08 5.5E-13 84.4 6.2 87 28-140 50-148 (273)
41 TIGR02469 CbiT precorrin-6Y C5 98.7 7.6E-08 1.7E-12 70.0 7.6 69 40-128 18-97 (124)
42 PLN02244 tocopherol O-methyltr 98.7 1.3E-07 2.7E-12 82.2 10.1 67 40-128 117-195 (340)
43 TIGR00138 gidB 16S rRNA methyl 98.7 4.3E-08 9.4E-13 78.1 6.6 65 41-127 42-117 (181)
44 PTZ00098 phosphoethanolamine N 98.7 1.2E-07 2.6E-12 79.6 9.5 96 8-126 20-124 (263)
45 PF07021 MetW: Methionine bios 98.7 2.7E-08 5.9E-13 80.2 5.0 72 36-127 8-83 (193)
46 TIGR00080 pimt protein-L-isoas 98.7 8.8E-08 1.9E-12 77.8 8.1 71 39-129 75-156 (215)
47 PRK13942 protein-L-isoaspartat 98.6 1.2E-07 2.6E-12 77.2 7.9 70 39-128 74-154 (212)
48 PRK10258 biotin biosynthesis p 98.6 9.8E-08 2.1E-12 78.8 7.3 65 41-128 42-112 (251)
49 PF05175 MTS: Methyltransferas 98.6 2.5E-07 5.4E-12 72.6 8.8 106 41-172 31-160 (170)
50 PRK08317 hypothetical protein; 98.6 2.9E-07 6.3E-12 73.9 9.4 70 39-128 17-96 (241)
51 PRK05785 hypothetical protein; 98.6 1.2E-07 2.5E-12 78.1 6.8 67 40-128 50-119 (226)
52 smart00650 rADc Ribosomal RNA 98.6 2E-07 4.4E-12 72.9 7.4 68 40-130 12-88 (169)
53 PRK15068 tRNA mo(5)U34 methylt 98.6 2.2E-07 4.7E-12 80.4 7.8 81 24-128 106-198 (322)
54 PRK00121 trmB tRNA (guanine-N( 98.5 2.2E-07 4.7E-12 75.0 6.8 70 40-128 39-120 (202)
55 PF13649 Methyltransf_25: Meth 98.5 1.2E-07 2.6E-12 67.8 4.5 66 45-128 1-76 (101)
56 PRK11207 tellurite resistance 98.5 3.5E-07 7.5E-12 73.5 7.4 64 41-128 30-104 (197)
57 PRK13944 protein-L-isoaspartat 98.5 5.1E-07 1.1E-11 72.9 7.8 69 40-128 71-151 (205)
58 PRK11705 cyclopropane fatty ac 98.5 3.6E-07 7.8E-12 80.8 7.4 72 39-135 165-244 (383)
59 TIGR02081 metW methionine bios 98.5 2E-07 4.4E-12 74.3 5.1 74 36-129 8-85 (194)
60 PLN02336 phosphoethanolamine N 98.5 8.9E-07 1.9E-11 79.7 9.7 68 39-128 264-341 (475)
61 PRK11036 putative S-adenosyl-L 98.5 4.2E-07 9.1E-12 75.5 7.0 67 40-128 43-121 (255)
62 PRK11088 rrmA 23S rRNA methylt 98.5 4E-07 8.6E-12 76.5 6.8 72 40-129 84-161 (272)
63 PF13659 Methyltransf_26: Meth 98.5 1E-06 2.2E-11 63.9 8.1 69 42-130 1-81 (117)
64 PF08241 Methyltransf_11: Meth 98.4 4.5E-07 9.8E-12 62.4 5.7 62 46-129 1-70 (95)
65 PRK14967 putative methyltransf 98.4 5.7E-07 1.2E-11 73.4 6.7 80 25-128 21-110 (223)
66 KOG2198 tRNA cytosine-5-methyl 98.4 5.1E-07 1.1E-11 79.0 6.7 104 39-152 153-285 (375)
67 PLN02490 MPBQ/MSBQ methyltrans 98.4 1E-06 2.2E-11 77.0 8.5 72 36-128 108-187 (340)
68 TIGR03534 RF_mod_PrmC protein- 98.4 8.4E-07 1.8E-11 72.5 7.1 69 41-131 87-166 (251)
69 PRK08287 cobalt-precorrin-6Y C 98.4 1.2E-06 2.7E-11 69.3 7.6 66 40-128 30-106 (187)
70 PRK06202 hypothetical protein; 98.4 1E-06 2.3E-11 72.0 7.3 72 40-128 59-138 (232)
71 PRK00050 16S rRNA m(4)C1402 me 98.4 1.8E-06 3.9E-11 74.1 8.9 86 29-131 8-102 (296)
72 PHA03412 putative methyltransf 98.4 4.6E-07 9.9E-12 75.5 4.6 118 41-177 49-186 (241)
73 TIGR03533 L3_gln_methyl protei 98.4 1.3E-06 2.7E-11 74.3 7.2 67 41-129 121-199 (284)
74 PRK00216 ubiE ubiquinone/menaq 98.3 1.6E-06 3.4E-11 70.0 7.4 68 40-127 50-129 (239)
75 TIGR00091 tRNA (guanine-N(7)-) 98.3 1.2E-06 2.6E-11 70.2 6.6 71 40-128 15-96 (194)
76 TIGR00477 tehB tellurite resis 98.3 1.4E-06 3.1E-11 69.8 7.0 70 35-129 25-104 (195)
77 PRK13943 protein-L-isoaspartat 98.3 1.6E-06 3.4E-11 75.2 7.6 69 39-127 78-157 (322)
78 PHA03411 putative methyltransf 98.3 1.4E-06 3.1E-11 74.0 6.9 70 41-132 64-139 (279)
79 PRK15001 SAM-dependent 23S rib 98.3 2.2E-06 4.7E-11 75.9 8.3 108 42-173 229-361 (378)
80 TIGR00740 methyltransferase, p 98.3 2.1E-06 4.6E-11 70.5 7.4 69 39-128 51-131 (239)
81 PRK03522 rumB 23S rRNA methylu 98.3 1.5E-06 3.2E-11 74.7 6.7 65 41-127 173-248 (315)
82 PLN02396 hexaprenyldihydroxybe 98.3 1.2E-06 2.5E-11 76.0 6.1 65 40-127 130-206 (322)
83 PF01135 PCMT: Protein-L-isoas 98.3 9E-07 1.9E-11 72.3 5.1 71 39-129 70-151 (209)
84 PF03848 TehB: Tellurite resis 98.3 1.9E-06 4.1E-11 69.7 6.8 68 35-128 25-103 (192)
85 PRK00377 cbiT cobalt-precorrin 98.3 2.7E-06 5.8E-11 68.2 7.6 70 39-127 38-119 (198)
86 TIGR00452 methyltransferase, p 98.3 4.5E-06 9.7E-11 72.2 9.3 81 24-128 105-197 (314)
87 PF13489 Methyltransf_23: Meth 98.3 1E-06 2.2E-11 66.6 4.7 67 39-128 20-87 (161)
88 PRK15451 tRNA cmo(5)U34 methyl 98.3 4.7E-06 1E-10 69.1 8.7 68 39-127 54-133 (247)
89 COG2263 Predicted RNA methylas 98.3 5.7E-06 1.2E-10 66.7 8.7 79 41-145 45-134 (198)
90 PRK00312 pcm protein-L-isoaspa 98.3 3.6E-06 7.7E-11 67.9 7.7 67 40-129 77-154 (212)
91 TIGR00536 hemK_fam HemK family 98.3 2.8E-06 6E-11 72.0 7.3 64 43-128 116-191 (284)
92 COG2227 UbiG 2-polyprenyl-3-me 98.2 1.1E-06 2.3E-11 73.2 4.4 62 41-125 59-130 (243)
93 PRK09328 N5-glutamine S-adenos 98.2 3.4E-06 7.5E-11 70.1 7.4 69 40-130 107-186 (275)
94 PRK12335 tellurite resistance 98.2 3.1E-06 6.8E-11 71.7 7.0 66 38-128 118-193 (287)
95 TIGR01177 conserved hypothetic 98.2 4E-06 8.7E-11 72.4 7.8 68 39-129 180-258 (329)
96 PRK00274 ksgA 16S ribosomal RN 98.2 3.5E-06 7.5E-11 71.1 6.8 69 40-131 41-117 (272)
97 PRK06922 hypothetical protein; 98.2 4.2E-06 9.1E-11 78.4 7.8 68 41-127 418-495 (677)
98 PRK14966 unknown domain/N5-glu 98.2 4.6E-06 1E-10 74.6 7.5 71 39-129 249-329 (423)
99 PRK11805 N5-glutamine S-adenos 98.2 3.8E-06 8.3E-11 72.2 6.7 64 43-128 135-210 (307)
100 PRK14896 ksgA 16S ribosomal RN 98.2 6.3E-06 1.4E-10 68.9 7.8 67 40-131 28-103 (258)
101 TIGR03704 PrmC_rel_meth putati 98.2 3.2E-06 6.9E-11 70.6 5.8 73 42-133 87-167 (251)
102 TIGR00537 hemK_rel_arch HemK-r 98.2 5E-06 1.1E-10 65.4 6.5 65 40-129 18-92 (179)
103 TIGR01934 MenG_MenH_UbiE ubiqu 98.2 4.2E-06 9.1E-11 66.8 6.2 68 40-127 38-114 (223)
104 COG4123 Predicted O-methyltran 98.2 7.6E-06 1.6E-10 68.6 7.7 78 39-135 42-131 (248)
105 TIGR02021 BchM-ChlM magnesium 98.2 5.4E-06 1.2E-10 67.1 6.7 62 40-127 54-127 (219)
106 PRK13168 rumA 23S rRNA m(5)U19 98.1 7.7E-06 1.7E-10 73.4 8.1 70 40-128 296-376 (443)
107 PRK07402 precorrin-6B methylas 98.1 8.1E-06 1.8E-10 65.1 7.2 68 40-127 39-117 (196)
108 PRK15128 23S rRNA m(5)C1962 me 98.1 1E-05 2.2E-10 72.0 8.5 74 40-131 219-305 (396)
109 PRK04457 spermidine synthase; 98.1 1.5E-05 3.2E-10 67.1 8.5 68 40-127 65-144 (262)
110 PRK01544 bifunctional N5-gluta 98.1 6.8E-06 1.5E-10 75.2 6.7 66 41-128 138-215 (506)
111 PRK00811 spermidine synthase; 98.1 4.5E-05 9.8E-10 64.8 11.3 112 40-171 75-217 (283)
112 COG2813 RsmC 16S RNA G1207 met 98.1 3.1E-05 6.7E-10 66.5 10.2 106 42-172 159-286 (300)
113 PRK09489 rsmC 16S ribosomal RN 98.1 1.3E-05 2.8E-10 70.1 8.1 66 42-130 197-272 (342)
114 PTZ00338 dimethyladenosine tra 98.1 8.6E-06 1.9E-10 69.8 6.7 70 39-133 34-115 (294)
115 PRK14968 putative methyltransf 98.1 1.2E-05 2.6E-10 62.7 6.9 66 40-129 22-100 (188)
116 PLN02336 phosphoethanolamine N 98.1 6.7E-06 1.4E-10 74.0 6.2 68 40-128 36-112 (475)
117 smart00828 PKS_MT Methyltransf 98.1 1.1E-05 2.4E-10 65.2 6.6 63 43-127 1-75 (224)
118 PRK14121 tRNA (guanine-N(7)-)- 98.1 1.1E-05 2.3E-10 71.7 7.0 69 40-127 121-200 (390)
119 PRK10909 rsmD 16S rRNA m(2)G96 98.0 1.5E-05 3.3E-10 64.6 7.1 69 40-129 52-131 (199)
120 PLN02585 magnesium protoporphy 98.0 9E-06 2E-10 70.3 6.1 61 41-127 144-220 (315)
121 PRK07580 Mg-protoporphyrin IX 98.0 1.3E-05 2.7E-10 64.8 6.6 63 40-128 62-136 (230)
122 TIGR03840 TMPT_Se_Te thiopurin 98.0 1.2E-05 2.5E-10 65.8 6.2 67 40-128 33-122 (213)
123 COG2890 HemK Methylase of poly 98.0 8.4E-06 1.8E-10 69.3 5.4 62 44-128 113-185 (280)
124 TIGR03438 probable methyltrans 98.0 2.6E-05 5.7E-10 66.6 8.5 73 21-105 41-127 (301)
125 PF08242 Methyltransf_12: Meth 98.0 5.5E-06 1.2E-10 58.6 3.5 64 46-128 1-75 (99)
126 PF05401 NodS: Nodulation prot 98.0 8.2E-06 1.8E-10 66.2 4.9 61 43-127 45-114 (201)
127 TIGR00755 ksgA dimethyladenosi 98.0 1.9E-05 4.1E-10 65.7 6.8 65 40-129 28-104 (253)
128 PLN03075 nicotianamine synthas 98.0 2.9E-05 6.4E-10 66.6 7.9 67 41-127 123-203 (296)
129 PRK11783 rlmL 23S rRNA m(2)G24 98.0 4.2E-05 9.2E-10 72.5 9.7 72 40-132 537-621 (702)
130 TIGR00406 prmA ribosomal prote 97.9 2E-05 4.4E-10 66.9 6.5 66 39-128 157-234 (288)
131 cd02440 AdoMet_MTases S-adenos 97.9 2.2E-05 4.8E-10 53.3 5.4 65 44-129 1-76 (107)
132 TIGR00479 rumA 23S rRNA (uraci 97.9 3.5E-05 7.5E-10 68.8 7.9 70 40-128 291-371 (431)
133 COG2242 CobL Precorrin-6B meth 97.9 4.2E-05 9.2E-10 61.5 7.4 68 39-128 32-111 (187)
134 KOG1499 Protein arginine N-met 97.9 1.5E-05 3.3E-10 69.4 5.1 65 40-126 59-134 (346)
135 PF06325 PrmA: Ribosomal prote 97.9 1.3E-05 2.8E-10 68.8 4.1 37 39-89 159-195 (295)
136 COG2518 Pcm Protein-L-isoaspar 97.9 4.4E-05 9.6E-10 62.4 6.9 68 39-129 70-148 (209)
137 COG2264 PrmA Ribosomal protein 97.9 5.6E-06 1.2E-10 71.1 1.7 37 39-89 160-196 (300)
138 PRK04148 hypothetical protein; 97.8 3.9E-05 8.4E-10 58.7 5.7 67 40-128 15-86 (134)
139 TIGR02085 meth_trns_rumB 23S r 97.8 5.2E-05 1.1E-09 66.8 7.0 66 41-128 233-309 (374)
140 KOG1270 Methyltransferases [Co 97.8 1.7E-05 3.8E-10 66.9 3.8 60 42-127 90-166 (282)
141 PLN02781 Probable caffeoyl-CoA 97.8 9.9E-05 2.2E-09 61.0 7.8 75 40-128 67-153 (234)
142 KOG3420 Predicted RNA methylas 97.8 3.3E-05 7.2E-10 60.3 4.3 105 19-146 24-141 (185)
143 PLN02366 spermidine synthase 97.8 0.00014 3.1E-09 62.7 8.6 72 40-130 90-176 (308)
144 COG2519 GCD14 tRNA(1-methylade 97.8 8.8E-05 1.9E-09 62.3 6.9 69 39-128 92-172 (256)
145 KOG1271 Methyltransferases [Ge 97.7 5.8E-05 1.3E-09 61.0 5.5 71 40-131 66-148 (227)
146 smart00138 MeTrc Methyltransfe 97.7 8E-05 1.7E-09 62.7 6.3 71 41-127 99-211 (264)
147 TIGR02716 C20_methyl_CrtF C-20 97.7 7.4E-05 1.6E-09 63.6 6.1 65 39-126 147-222 (306)
148 PF09445 Methyltransf_15: RNA 97.7 3.4E-05 7.4E-10 60.9 3.5 64 43-127 1-77 (163)
149 KOG0820 Ribosomal RNA adenine 97.7 0.00021 4.7E-09 60.7 8.4 71 39-134 56-138 (315)
150 COG0030 KsgA Dimethyladenosine 97.7 0.00022 4.8E-09 60.2 8.2 72 40-134 29-110 (259)
151 PF01269 Fibrillarin: Fibrilla 97.7 7.4E-05 1.6E-09 61.8 5.0 73 39-128 71-152 (229)
152 PRK13255 thiopurine S-methyltr 97.7 0.00011 2.5E-09 60.2 6.2 65 40-126 36-123 (218)
153 PF10672 Methyltrans_SAM: S-ad 97.6 0.00014 3.1E-09 62.1 6.9 92 40-151 122-226 (286)
154 TIGR00417 speE spermidine synt 97.6 0.001 2.2E-08 56.0 12.0 70 40-129 71-155 (270)
155 PRK00517 prmA ribosomal protei 97.6 0.0001 2.2E-09 61.3 5.8 37 39-89 117-153 (250)
156 PF08704 GCD14: tRNA methyltra 97.6 0.00017 3.7E-09 60.5 7.0 73 39-128 38-122 (247)
157 TIGR00095 RNA methyltransferas 97.6 0.00021 4.5E-09 57.3 6.8 72 41-130 49-132 (189)
158 PLN02476 O-methyltransferase 97.6 0.0003 6.6E-09 59.9 8.0 75 40-128 117-203 (278)
159 COG3963 Phospholipid N-methylt 97.6 0.00041 8.8E-09 55.3 7.8 92 40-151 47-144 (194)
160 PRK05134 bifunctional 3-demeth 97.6 0.00019 4E-09 58.4 6.2 66 40-127 47-122 (233)
161 TIGR01983 UbiG ubiquinone bios 97.5 0.0002 4.4E-09 57.6 6.2 65 41-127 45-120 (224)
162 COG1092 Predicted SAM-dependen 97.5 0.0002 4.3E-09 63.8 6.6 70 42-129 218-300 (393)
163 PLN02672 methionine S-methyltr 97.5 0.00015 3.1E-09 71.7 6.1 67 42-128 119-212 (1082)
164 PRK05031 tRNA (uracil-5-)-meth 97.5 0.00031 6.7E-09 61.7 7.4 69 43-128 208-297 (362)
165 PF02390 Methyltransf_4: Putat 97.5 0.00033 7.2E-09 56.5 6.8 67 43-127 19-96 (195)
166 PRK03612 spermidine synthase; 97.5 0.00034 7.4E-09 64.3 7.3 69 40-128 296-382 (521)
167 PF08003 Methyltransf_9: Prote 97.5 0.0003 6.5E-09 60.7 6.2 35 41-89 115-149 (315)
168 PRK11727 23S rRNA mA1618 methy 97.4 0.00056 1.2E-08 59.4 7.8 78 41-135 114-205 (321)
169 PF01596 Methyltransf_3: O-met 97.4 0.00035 7.7E-09 56.9 6.0 75 40-128 44-130 (205)
170 TIGR02143 trmA_only tRNA (urac 97.4 0.00045 9.7E-09 60.5 6.7 70 42-128 198-288 (353)
171 PF02475 Met_10: Met-10+ like- 97.4 0.00054 1.2E-08 55.7 6.6 72 36-129 96-179 (200)
172 PF05185 PRMT5: PRMT5 arginine 97.4 0.00067 1.4E-08 61.4 7.6 70 41-128 186-267 (448)
173 KOG3674 FtsJ-like RNA methyltr 97.3 0.0013 2.8E-08 59.9 9.2 146 21-172 109-299 (696)
174 PF00398 RrnaAD: Ribosomal RNA 97.3 0.00045 9.7E-09 57.9 5.9 69 40-128 29-106 (262)
175 PF01170 UPF0020: Putative RNA 97.3 0.0014 3.1E-08 52.0 8.1 111 22-151 13-135 (179)
176 KOG1500 Protein arginine N-met 97.3 0.0003 6.5E-09 61.7 4.4 63 42-127 178-251 (517)
177 COG2521 Predicted archaeal met 97.2 0.0011 2.3E-08 55.6 6.6 86 40-150 133-232 (287)
178 KOG3010 Methyltransferase [Gen 97.2 0.00031 6.7E-09 58.8 3.0 65 1-88 1-65 (261)
179 COG1889 NOP1 Fibrillarin-like 97.2 0.0012 2.6E-08 54.1 6.4 72 39-128 74-154 (231)
180 PF08123 DOT1: Histone methyla 97.2 0.0041 8.9E-08 50.7 9.5 78 32-128 34-131 (205)
181 PRK01581 speE spermidine synth 97.2 0.0016 3.4E-08 57.7 7.5 69 40-128 149-235 (374)
182 KOG1541 Predicted protein carb 97.1 0.00064 1.4E-08 56.5 4.1 64 42-128 51-121 (270)
183 KOG1540 Ubiquinone biosynthesi 97.1 0.0017 3.8E-08 54.9 6.5 79 41-139 100-192 (296)
184 PF03602 Cons_hypoth95: Conser 97.0 0.00089 1.9E-08 53.6 4.4 70 41-128 42-123 (183)
185 PRK04338 N(2),N(2)-dimethylgua 97.0 0.0011 2.4E-08 58.8 5.2 65 42-127 58-133 (382)
186 TIGR00006 S-adenosyl-methyltra 97.0 0.0036 7.8E-08 54.1 8.1 76 40-131 19-104 (305)
187 KOG2904 Predicted methyltransf 97.0 0.0021 4.5E-08 55.0 6.1 67 42-128 149-231 (328)
188 PRK13256 thiopurine S-methyltr 97.0 0.001 2.2E-08 55.1 4.2 69 40-128 42-133 (226)
189 KOG3191 Predicted N6-DNA-methy 96.9 0.0025 5.5E-08 51.4 5.8 69 42-131 44-122 (209)
190 COG2265 TrmA SAM-dependent met 96.9 0.0018 4E-08 58.3 5.6 73 40-134 292-375 (432)
191 PF05724 TPMT: Thiopurine S-me 96.8 0.0017 3.6E-08 53.4 4.6 68 39-128 35-125 (218)
192 PF04989 CmcI: Cephalosporin h 96.8 0.0041 9E-08 50.9 6.7 79 41-128 32-120 (206)
193 PF00891 Methyltransf_2: O-met 96.8 0.0029 6.3E-08 51.8 5.6 64 39-126 98-165 (241)
194 PF05958 tRNA_U5-meth_tr: tRNA 96.8 0.0016 3.5E-08 57.0 4.3 75 43-134 198-291 (352)
195 COG4076 Predicted RNA methylas 96.7 0.0023 4.9E-08 52.2 4.5 61 42-127 33-104 (252)
196 TIGR01444 fkbM_fam methyltrans 96.7 0.003 6.5E-08 47.2 4.9 50 44-106 1-61 (143)
197 PF03291 Pox_MCEL: mRNA cappin 96.7 0.0014 3.1E-08 57.1 3.5 71 41-129 62-155 (331)
198 COG0421 SpeE Spermidine syntha 96.7 0.009 2E-07 51.1 8.3 89 43-151 78-181 (282)
199 COG0742 N6-adenine-specific me 96.7 0.0087 1.9E-07 48.3 7.7 75 36-130 34-125 (187)
200 KOG1975 mRNA cap methyltransfe 96.6 0.0014 3.1E-08 57.1 2.5 108 5-129 73-206 (389)
201 PF10294 Methyltransf_16: Puta 96.6 0.011 2.3E-07 46.6 7.2 85 24-125 22-125 (173)
202 KOG2360 Proliferation-associat 96.5 0.0032 6.9E-08 55.8 4.3 80 40-137 212-302 (413)
203 KOG2730 Methylase [General fun 96.5 0.0031 6.7E-08 52.4 3.9 75 41-134 94-180 (263)
204 PF02384 N6_Mtase: N-6 DNA Met 96.4 0.004 8.8E-08 52.9 4.2 81 40-132 45-138 (311)
205 KOG2187 tRNA uracil-5-methyltr 96.3 0.0043 9.4E-08 56.8 4.3 52 38-104 380-442 (534)
206 KOG1596 Fibrillarin and relate 96.3 0.0039 8.5E-08 52.5 3.5 74 39-129 154-236 (317)
207 COG4122 Predicted O-methyltran 96.3 0.021 4.6E-07 47.1 7.7 72 40-129 58-142 (219)
208 COG0220 Predicted S-adenosylme 96.3 0.011 2.4E-07 49.0 6.1 64 43-125 50-125 (227)
209 PLN02589 caffeoyl-CoA O-methyl 96.3 0.014 3E-07 49.0 6.6 74 41-128 79-165 (247)
210 KOG2915 tRNA(1-methyladenosine 96.2 0.014 3E-07 49.9 6.4 72 39-128 103-186 (314)
211 KOG4300 Predicted methyltransf 96.2 0.005 1.1E-07 50.8 3.4 82 44-151 79-173 (252)
212 PRK01544 bifunctional N5-gluta 96.1 0.012 2.6E-07 54.0 6.0 68 41-127 347-425 (506)
213 PF12147 Methyltransf_20: Puta 96.0 0.019 4.1E-07 49.4 6.4 93 20-128 111-218 (311)
214 COG1041 Predicted DNA modifica 96.0 0.022 4.8E-07 50.0 6.9 89 39-153 195-296 (347)
215 PF05148 Methyltransf_8: Hypot 96.0 0.023 4.9E-07 46.8 6.4 61 40-128 71-131 (219)
216 PF13679 Methyltransf_32: Meth 95.8 0.017 3.7E-07 43.8 4.6 41 40-89 24-64 (141)
217 PLN02823 spermine synthase 95.7 0.036 7.8E-07 48.5 6.9 68 41-128 103-185 (336)
218 KOG1663 O-methyltransferase [S 95.7 0.039 8.4E-07 45.9 6.7 74 41-128 73-158 (237)
219 COG4976 Predicted methyltransf 95.7 0.0066 1.4E-07 50.9 2.2 46 27-88 112-157 (287)
220 TIGR03439 methyl_EasF probable 95.6 0.1 2.2E-06 45.4 9.4 105 21-138 54-173 (319)
221 PF01795 Methyltransf_5: MraW 95.6 0.044 9.5E-07 47.5 7.1 85 30-131 10-105 (310)
222 COG2520 Predicted methyltransf 95.5 0.016 3.5E-07 50.8 4.1 70 38-129 185-266 (341)
223 PF05219 DREV: DREV methyltran 95.5 0.017 3.7E-07 48.9 3.9 32 42-88 95-126 (265)
224 KOG2361 Predicted methyltransf 95.3 0.021 4.6E-07 48.0 3.8 67 44-125 74-150 (264)
225 TIGR00308 TRM1 tRNA(guanine-26 95.2 0.036 7.8E-07 49.2 5.3 66 43-127 46-122 (374)
226 PF13578 Methyltransf_24: Meth 95.1 0.0087 1.9E-07 42.7 1.0 67 46-128 1-78 (106)
227 PRK10742 putative methyltransf 95.1 0.059 1.3E-06 45.4 5.9 70 40-131 85-176 (250)
228 PF02527 GidB: rRNA small subu 95.0 0.084 1.8E-06 42.3 6.4 68 39-128 45-124 (184)
229 COG0275 Predicted S-adenosylme 94.9 0.16 3.5E-06 44.0 8.3 77 40-131 22-108 (314)
230 PF05206 TRM13: Methyltransfer 94.9 0.13 2.9E-06 43.4 7.7 70 29-106 6-86 (259)
231 COG0357 GidB Predicted S-adeno 94.8 0.11 2.5E-06 42.7 6.9 65 42-128 68-144 (215)
232 PF01564 Spermine_synth: Sperm 94.8 0.076 1.6E-06 44.3 5.9 113 40-171 75-217 (246)
233 PF09243 Rsm22: Mitochondrial 94.6 0.061 1.3E-06 45.5 5.0 47 29-88 22-68 (274)
234 KOG3045 Predicted RNA methylas 94.5 0.073 1.6E-06 45.4 5.1 57 42-128 181-237 (325)
235 COG3897 Predicted methyltransf 94.5 0.07 1.5E-06 43.6 4.8 60 41-125 79-148 (218)
236 PRK11783 rlmL 23S rRNA m(2)G24 94.4 0.23 4.9E-06 47.4 8.8 86 37-128 186-312 (702)
237 KOG2940 Predicted methyltransf 94.4 0.043 9.4E-07 46.2 3.5 93 33-151 64-165 (325)
238 cd00315 Cyt_C5_DNA_methylase C 94.2 0.075 1.6E-06 44.9 4.5 66 44-130 2-73 (275)
239 KOG2899 Predicted methyltransf 93.9 0.068 1.5E-06 45.1 3.6 44 32-88 45-92 (288)
240 KOG1661 Protein-L-isoaspartate 93.1 0.19 4.1E-06 41.6 4.9 72 37-127 78-170 (237)
241 COG1255 Uncharacterized protei 93.0 0.19 4.2E-06 37.7 4.4 65 40-126 13-77 (129)
242 PRK06179 short chain dehydroge 92.9 1.7 3.6E-05 35.5 10.5 80 42-133 4-87 (270)
243 PLN02657 3,8-divinyl protochlo 92.7 1.7 3.6E-05 38.4 10.8 77 40-129 58-146 (390)
244 PF04672 Methyltransf_19: S-ad 92.6 0.23 5E-06 42.2 4.9 74 43-128 70-160 (267)
245 PRK08177 short chain dehydroge 91.9 1.1 2.5E-05 35.6 8.1 74 44-129 3-81 (225)
246 PF00145 DNA_methylase: C-5 cy 91.8 0.092 2E-06 44.0 1.7 64 44-129 2-71 (335)
247 KOG2651 rRNA adenine N-6-methy 91.3 0.44 9.5E-06 42.7 5.3 35 40-88 152-186 (476)
248 KOG3115 Methyltransferase-like 90.7 0.13 2.8E-06 42.5 1.4 34 42-88 61-94 (249)
249 COG0500 SmtA SAM-dependent met 90.1 0.44 9.5E-06 32.7 3.6 47 45-104 52-109 (257)
250 PHA01634 hypothetical protein 89.0 0.71 1.5E-05 35.5 4.2 45 31-89 17-62 (156)
251 PF03686 UPF0146: Uncharacteri 89.0 1.1 2.4E-05 34.1 5.2 65 41-126 13-77 (127)
252 PLN02662 cinnamyl-alcohol dehy 88.6 5 0.00011 33.5 9.6 73 42-131 4-88 (322)
253 COG3510 CmcI Cephalosporin hyd 88.5 3.3 7.2E-05 34.1 7.9 64 41-113 69-138 (237)
254 PF03141 Methyltransf_29: Puta 88.4 0.61 1.3E-05 42.9 4.1 20 43-62 119-138 (506)
255 PLN02695 GDP-D-mannose-3',5'-e 87.9 2.4 5.1E-05 37.0 7.4 88 25-129 4-95 (370)
256 PRK06398 aldose dehydrogenase; 87.8 7.2 0.00016 31.7 9.8 75 42-129 6-82 (258)
257 KOG0024 Sorbitol dehydrogenase 87.7 2.7 5.8E-05 37.0 7.4 90 39-151 167-264 (354)
258 PRK06196 oxidoreductase; Provi 87.6 7.4 0.00016 32.8 10.1 77 41-129 25-109 (315)
259 PF06460 NSP13: Coronavirus NS 86.9 2.6 5.6E-05 36.1 6.7 66 41-128 61-130 (299)
260 PRK05993 short chain dehydroge 86.6 5.5 0.00012 32.8 8.6 80 41-132 3-89 (277)
261 KOG2671 Putative RNA methylase 86.1 0.54 1.2E-05 41.6 2.4 92 15-128 175-293 (421)
262 TIGR02987 met_A_Alw26 type II 86.0 0.64 1.4E-05 42.7 2.9 82 41-130 31-123 (524)
263 COG4798 Predicted methyltransf 85.8 1.1 2.3E-05 37.0 3.7 38 39-88 46-83 (238)
264 cd08283 FDH_like_1 Glutathione 85.7 2.8 6.2E-05 36.5 6.7 74 39-126 182-261 (386)
265 TIGR00675 dcm DNA-methyltransf 85.6 0.84 1.8E-05 39.3 3.3 62 45-128 1-68 (315)
266 PRK06523 short chain dehydroge 85.5 4.3 9.4E-05 32.7 7.3 76 41-128 8-86 (260)
267 KOG1209 1-Acyl dihydroxyaceton 85.2 5 0.00011 33.7 7.4 84 40-134 5-96 (289)
268 PRK06953 short chain dehydroge 84.4 5.6 0.00012 31.4 7.4 74 44-129 3-80 (222)
269 PF04816 DUF633: Family of unk 84.2 1.4 3.1E-05 35.8 3.8 48 45-105 1-60 (205)
270 COG0116 Predicted N6-adenine-s 84.2 7.5 0.00016 34.8 8.6 100 40-150 190-327 (381)
271 TIGR02622 CDP_4_6_dhtase CDP-g 83.9 15 0.00032 31.3 10.3 74 41-129 3-85 (349)
272 PF06080 DUF938: Protein of un 83.8 1.6 3.5E-05 35.7 4.0 27 39-65 22-49 (204)
273 PRK07533 enoyl-(acyl carrier p 83.2 4.6 0.0001 32.9 6.6 78 41-129 9-98 (258)
274 PRK07454 short chain dehydroge 83.0 7.5 0.00016 30.9 7.6 77 41-129 5-93 (241)
275 PRK12748 3-ketoacyl-(acyl-carr 82.8 16 0.00034 29.5 9.5 77 42-129 5-105 (256)
276 PRK08264 short chain dehydroge 82.5 22 0.00048 28.0 10.2 75 41-129 5-83 (238)
277 COG0286 HsdM Type I restrictio 82.2 2.4 5.1E-05 38.9 4.9 84 40-135 185-280 (489)
278 PF11968 DUF3321: Putative met 82.0 2.5 5.4E-05 35.0 4.4 94 10-128 13-113 (219)
279 PF07091 FmrO: Ribosomal RNA m 81.7 1.8 3.8E-05 36.6 3.5 43 33-88 97-139 (251)
280 COG0270 Dcm Site-specific DNA 81.3 2.9 6.3E-05 36.2 4.9 68 43-129 4-77 (328)
281 PHA03108 poly(A) polymerase sm 81.2 25 0.00053 30.4 10.2 80 42-133 61-145 (300)
282 PF01073 3Beta_HSD: 3-beta hyd 80.9 12 0.00026 31.5 8.5 68 51-132 5-79 (280)
283 PLN02989 cinnamyl-alcohol dehy 80.9 32 0.00069 28.8 11.1 72 41-129 4-87 (325)
284 PF02254 TrkA_N: TrkA-N domain 80.8 1.4 3E-05 31.4 2.4 63 50-127 4-70 (116)
285 PRK00536 speE spermidine synth 80.8 5.7 0.00012 33.6 6.4 77 40-151 71-162 (262)
286 PRK06182 short chain dehydroge 80.7 11 0.00025 30.6 8.1 78 42-131 3-86 (273)
287 PRK07326 short chain dehydroge 80.5 5 0.00011 31.7 5.8 79 41-131 5-94 (237)
288 PRK09072 short chain dehydroge 80.0 25 0.00054 28.4 9.9 78 41-130 4-91 (263)
289 PRK07856 short chain dehydroge 80.0 25 0.00054 28.2 9.8 78 41-130 5-86 (252)
290 KOG2920 Predicted methyltransf 79.9 2.4 5.2E-05 36.4 3.8 39 37-89 112-150 (282)
291 TIGR01472 gmd GDP-mannose 4,6- 79.6 16 0.00035 31.0 8.9 66 51-130 8-89 (343)
292 PRK12829 short chain dehydroge 79.6 15 0.00033 29.4 8.4 78 41-130 10-97 (264)
293 PRK06171 sorbitol-6-phosphate 79.3 13 0.00028 30.1 7.9 76 42-129 9-87 (266)
294 COG1748 LYS9 Saccharopine dehy 79.1 14 0.00029 33.2 8.5 71 43-130 2-79 (389)
295 COG0451 WcaG Nucleoside-diphos 79.0 25 0.00053 28.8 9.6 72 45-133 3-78 (314)
296 PRK08267 short chain dehydroge 78.9 21 0.00045 28.7 9.0 76 44-131 3-89 (260)
297 PRK05693 short chain dehydroge 78.9 21 0.00044 29.1 9.1 78 44-133 3-86 (274)
298 PRK09186 flagellin modificatio 78.5 12 0.00027 29.8 7.5 77 41-129 3-93 (256)
299 PRK05867 short chain dehydroge 78.3 19 0.00042 28.9 8.6 78 41-130 8-97 (253)
300 PRK06483 dihydromonapterin red 78.0 29 0.00064 27.4 9.5 75 43-129 3-84 (236)
301 TIGR03589 PseB UDP-N-acetylglu 77.9 38 0.00082 28.7 10.7 73 42-129 4-84 (324)
302 PRK05717 oxidoreductase; Valid 77.9 11 0.00024 30.3 7.1 78 41-130 9-95 (255)
303 PRK07806 short chain dehydroge 77.9 14 0.0003 29.4 7.6 76 42-129 6-94 (248)
304 PRK15181 Vi polysaccharide bio 77.8 32 0.0007 29.4 10.3 74 40-130 13-101 (348)
305 PRK10458 DNA cytosine methylas 77.5 6.2 0.00014 36.1 6.0 51 42-106 88-147 (467)
306 PRK08220 2,3-dihydroxybenzoate 77.4 22 0.00047 28.3 8.6 77 42-130 8-87 (252)
307 TIGR03466 HpnA hopanoid-associ 77.4 13 0.00027 30.9 7.5 64 50-129 7-74 (328)
308 PRK08339 short chain dehydroge 77.3 25 0.00054 28.7 9.1 77 41-129 7-95 (263)
309 PRK06197 short chain dehydroge 77.2 40 0.00087 28.0 10.5 77 41-129 15-105 (306)
310 PRK06079 enoyl-(acyl carrier p 77.0 11 0.00023 30.6 6.8 78 41-129 6-93 (252)
311 PLN00198 anthocyanidin reducta 76.9 37 0.0008 28.6 10.3 71 42-129 9-90 (338)
312 PRK05786 fabG 3-ketoacyl-(acyl 76.7 10 0.00022 29.9 6.5 75 42-128 5-90 (238)
313 PRK12828 short chain dehydroge 76.5 9.8 0.00021 29.8 6.3 76 42-129 7-92 (239)
314 PRK08219 short chain dehydroge 76.2 21 0.00047 27.7 8.2 74 43-131 4-83 (227)
315 PF07757 AdoMet_MTase: Predict 76.1 3.8 8.2E-05 30.4 3.4 36 40-90 57-92 (112)
316 COG1088 RfbB dTDP-D-glucose 4, 75.9 8.9 0.00019 33.5 6.1 49 78-129 26-84 (340)
317 PRK08217 fabG 3-ketoacyl-(acyl 75.9 15 0.00032 29.1 7.2 76 41-128 4-91 (253)
318 PRK07825 short chain dehydroge 75.7 21 0.00045 29.0 8.2 78 42-131 5-90 (273)
319 PF01358 PARP_regulatory: Poly 75.6 10 0.00023 32.7 6.4 79 37-128 54-137 (294)
320 PRK09009 C factor cell-cell si 75.5 35 0.00076 26.9 9.3 76 44-131 2-79 (235)
321 PRK07666 fabG 3-ketoacyl-(acyl 75.3 24 0.00052 27.9 8.3 78 42-131 7-96 (239)
322 PRK07889 enoyl-(acyl carrier p 75.2 11 0.00024 30.7 6.4 78 41-129 6-95 (256)
323 PRK11524 putative methyltransf 74.9 6.5 0.00014 33.2 5.1 47 28-89 193-241 (284)
324 PLN02896 cinnamyl-alcohol dehy 74.8 33 0.00072 29.2 9.6 74 41-131 9-91 (353)
325 PRK08594 enoyl-(acyl carrier p 74.6 18 0.00039 29.5 7.5 78 41-129 6-97 (257)
326 PRK07984 enoyl-(acyl carrier p 74.5 17 0.00036 30.0 7.4 78 41-129 5-94 (262)
327 PLN03209 translocon at the inn 74.4 23 0.0005 33.4 8.9 73 40-129 78-169 (576)
328 PRK08340 glucose-1-dehydrogena 74.3 13 0.00028 30.0 6.6 74 44-129 2-86 (259)
329 PLN02240 UDP-glucose 4-epimera 74.3 52 0.0011 27.7 11.4 73 42-129 5-91 (352)
330 KOG1201 Hydroxysteroid 17-beta 74.2 58 0.0013 28.3 10.7 100 41-152 37-149 (300)
331 PF14314 Methyltrans_Mon: Viru 74.1 77 0.0017 30.6 12.4 57 6-64 289-345 (675)
332 PRK06550 fabG 3-ketoacyl-(acyl 73.4 30 0.00066 27.2 8.4 71 42-128 5-76 (235)
333 PRK11908 NAD-dependent epimera 73.4 56 0.0012 27.7 11.2 71 44-130 3-79 (347)
334 PRK06138 short chain dehydroge 73.3 39 0.00085 26.7 9.1 78 42-131 5-93 (252)
335 KOG2782 Putative SAM dependent 72.9 1.5 3.2E-05 36.8 0.7 84 33-131 33-130 (303)
336 PRK06180 short chain dehydroge 72.8 41 0.0009 27.4 9.4 78 42-131 4-90 (277)
337 TIGR03206 benzo_BadH 2-hydroxy 72.5 43 0.00093 26.5 9.2 76 42-129 3-90 (250)
338 PRK12481 2-deoxy-D-gluconate 3 72.3 45 0.00098 26.8 9.4 77 41-129 7-93 (251)
339 PRK07063 short chain dehydroge 72.2 35 0.00076 27.4 8.7 76 42-129 7-96 (260)
340 PRK08278 short chain dehydroge 71.8 50 0.0011 27.0 9.7 77 41-129 5-100 (273)
341 PRK05872 short chain dehydroge 71.8 49 0.0011 27.5 9.7 79 41-131 8-97 (296)
342 PRK06194 hypothetical protein; 71.7 53 0.0012 26.7 9.9 79 42-132 6-96 (287)
343 PLN02214 cinnamoyl-CoA reducta 71.7 27 0.00058 29.9 8.3 73 41-130 9-92 (342)
344 COG2910 Putative NADH-flavin r 71.6 51 0.0011 27.0 9.1 68 78-151 24-93 (211)
345 PRK05650 short chain dehydroge 71.5 47 0.001 26.9 9.4 76 44-131 2-89 (270)
346 KOG0821 Predicted ribosomal RN 71.5 12 0.00026 31.6 5.7 54 42-107 51-112 (326)
347 PRK08643 acetoin reductase; Va 71.5 50 0.0011 26.3 9.5 76 42-129 2-89 (256)
348 PRK09135 pteridine reductase; 71.4 42 0.00092 26.4 8.9 77 41-129 5-95 (249)
349 PF04445 SAM_MT: Putative SAM- 71.3 6.5 0.00014 32.8 4.2 70 40-131 72-163 (234)
350 PRK08993 2-deoxy-D-gluconate 3 71.2 22 0.00047 28.7 7.2 76 42-129 10-95 (253)
351 PLN02653 GDP-mannose 4,6-dehyd 70.9 63 0.0014 27.2 10.6 73 42-129 6-93 (340)
352 COG2384 Predicted SAM-dependen 70.9 13 0.00029 30.8 5.8 40 37-89 12-51 (226)
353 PRK07062 short chain dehydroge 70.9 53 0.0012 26.4 9.8 77 41-129 7-97 (265)
354 KOG2078 tRNA modification enzy 70.9 2.1 4.5E-05 39.0 1.1 43 32-89 239-282 (495)
355 PRK07792 fabG 3-ketoacyl-(acyl 70.8 38 0.00082 28.4 8.9 77 41-129 11-99 (306)
356 KOG3924 Putative protein methy 70.6 11 0.00024 33.9 5.7 70 39-126 190-279 (419)
357 PLN02253 xanthoxin dehydrogena 70.5 23 0.00049 28.9 7.3 76 42-129 18-104 (280)
358 PF01555 N6_N4_Mtase: DNA meth 70.0 5.5 0.00012 31.2 3.3 34 40-88 190-223 (231)
359 PRK06114 short chain dehydroge 69.9 56 0.0012 26.2 9.4 77 41-129 7-96 (254)
360 PRK06172 short chain dehydroge 69.7 27 0.00058 27.9 7.4 78 41-130 6-95 (253)
361 PRK08251 short chain dehydroge 69.7 26 0.00056 27.8 7.3 76 43-130 3-92 (248)
362 PRK12823 benD 1,6-dihydroxycyc 69.3 20 0.00043 28.8 6.6 75 42-128 8-93 (260)
363 PRK07904 short chain dehydroge 69.1 60 0.0013 26.3 13.3 79 39-128 5-96 (253)
364 KOG4169 15-hydroxyprostaglandi 68.7 23 0.0005 29.9 6.8 89 42-146 5-108 (261)
365 PRK07023 short chain dehydroge 68.4 42 0.00091 26.6 8.3 74 44-129 3-87 (243)
366 PRK12384 sorbitol-6-phosphate 68.2 51 0.0011 26.3 8.8 77 42-130 2-92 (259)
367 PRK07677 short chain dehydroge 68.0 59 0.0013 26.0 9.1 76 42-129 1-88 (252)
368 PRK06200 2,3-dihydroxy-2,3-dih 67.7 23 0.0005 28.6 6.7 77 41-129 5-90 (263)
369 PRK07102 short chain dehydroge 67.7 28 0.00061 27.6 7.1 73 43-128 2-85 (243)
370 PRK05876 short chain dehydroge 67.5 51 0.0011 27.1 8.8 78 42-131 6-95 (275)
371 PRK06124 gluconate 5-dehydroge 67.2 63 0.0014 25.8 9.2 77 41-129 10-98 (256)
372 PF05050 Methyltransf_21: Meth 66.8 6.2 0.00013 29.3 2.9 31 47-89 1-34 (167)
373 PRK08213 gluconate 5-dehydroge 66.7 48 0.001 26.6 8.4 77 41-129 11-99 (259)
374 CHL00194 ycf39 Ycf39; Provisio 66.7 43 0.00093 28.1 8.4 63 49-127 6-72 (317)
375 PRK06949 short chain dehydroge 66.4 40 0.00086 26.8 7.8 77 41-129 8-96 (258)
376 PRK06198 short chain dehydroge 66.3 35 0.00075 27.3 7.4 79 41-131 5-96 (260)
377 PLN02572 UDP-sulfoquinovose sy 66.2 44 0.00095 30.0 8.7 73 42-129 47-146 (442)
378 PRK06463 fabG 3-ketoacyl-(acyl 65.9 56 0.0012 26.1 8.6 78 41-130 6-90 (255)
379 PRK07814 short chain dehydroge 65.6 64 0.0014 26.0 9.0 77 41-129 9-97 (263)
380 PRK08263 short chain dehydroge 65.6 53 0.0011 26.7 8.5 78 42-131 3-89 (275)
381 PRK06940 short chain dehydroge 65.4 62 0.0013 26.6 8.9 72 44-129 4-86 (275)
382 PRK12824 acetoacetyl-CoA reduc 65.4 65 0.0014 25.3 9.4 74 44-129 4-90 (245)
383 PRK12935 acetoacetyl-CoA reduc 65.3 53 0.0012 26.0 8.3 78 42-131 6-96 (247)
384 KOG1371 UDP-glucose 4-epimeras 65.3 50 0.0011 29.2 8.5 81 78-166 26-119 (343)
385 PRK07060 short chain dehydroge 65.0 62 0.0014 25.4 8.6 76 41-130 8-88 (245)
386 PRK07791 short chain dehydroge 65.0 79 0.0017 26.1 9.6 78 41-130 5-103 (286)
387 TIGR03325 BphB_TodD cis-2,3-di 64.6 37 0.0008 27.4 7.4 77 41-129 4-89 (262)
388 PRK09987 dTDP-4-dehydrorhamnos 64.6 75 0.0016 26.5 9.4 64 44-130 2-65 (299)
389 PLN02232 ubiquinone biosynthes 64.5 10 0.00022 29.1 3.8 47 93-151 26-72 (160)
390 PRK06841 short chain dehydroge 63.9 69 0.0015 25.5 8.7 78 41-130 14-100 (255)
391 PLN02260 probable rhamnose bio 63.8 1.2E+02 0.0026 28.5 11.5 76 42-130 6-91 (668)
392 PRK07024 short chain dehydroge 63.6 53 0.0011 26.4 8.1 76 43-130 3-89 (257)
393 PRK06057 short chain dehydroge 63.5 20 0.00044 28.8 5.6 76 41-129 6-89 (255)
394 PRK07370 enoyl-(acyl carrier p 63.2 37 0.0008 27.6 7.1 78 41-129 5-97 (258)
395 PRK07453 protochlorophyllide o 63.2 90 0.0019 26.2 11.2 77 41-129 5-93 (322)
396 TIGR01181 dTDP_gluc_dehyt dTDP 63.0 25 0.00054 28.8 6.1 68 50-129 6-83 (317)
397 PRK05875 short chain dehydroge 62.8 22 0.00047 28.9 5.7 75 42-128 7-95 (276)
398 PRK10669 putative cation:proto 62.8 22 0.00047 32.9 6.2 67 43-126 418-488 (558)
399 PRK07774 short chain dehydroge 62.8 47 0.001 26.3 7.6 77 41-129 5-93 (250)
400 PRK08690 enoyl-(acyl carrier p 62.6 33 0.00071 27.9 6.7 79 41-130 5-95 (261)
401 PRK06603 enoyl-(acyl carrier p 62.3 34 0.00073 27.9 6.7 77 42-129 8-96 (260)
402 PRK08277 D-mannonate oxidoredu 62.2 40 0.00086 27.4 7.2 77 41-129 9-97 (278)
403 PRK07478 short chain dehydroge 62.1 41 0.00089 26.9 7.1 76 42-129 6-93 (254)
404 PRK06181 short chain dehydroge 62.0 42 0.00091 26.9 7.2 75 43-129 2-88 (263)
405 PRK08159 enoyl-(acyl carrier p 62.0 34 0.00073 28.2 6.7 77 42-129 10-98 (272)
406 KOG2352 Predicted spermine/spe 61.9 21 0.00045 33.0 5.7 81 29-131 34-126 (482)
407 PRK06505 enoyl-(acyl carrier p 61.9 32 0.00068 28.4 6.5 78 41-129 6-95 (271)
408 PRK12744 short chain dehydroge 61.9 46 0.001 26.7 7.4 76 42-129 8-99 (257)
409 TIGR01832 kduD 2-deoxy-D-gluco 61.8 45 0.00099 26.4 7.3 77 41-129 4-90 (248)
410 PF13460 NAD_binding_10: NADH( 61.8 48 0.001 25.0 7.2 64 51-130 6-71 (183)
411 PF05971 Methyltransf_10: Prot 61.3 9.6 0.00021 33.0 3.4 73 43-135 104-193 (299)
412 PRK08589 short chain dehydroge 61.1 39 0.00085 27.6 7.0 78 41-130 5-93 (272)
413 PRK12367 short chain dehydroge 61.0 89 0.0019 25.4 9.3 71 42-129 14-89 (245)
414 PRK07890 short chain dehydroge 60.9 72 0.0016 25.3 8.4 77 41-129 4-92 (258)
415 PRK06701 short chain dehydroge 60.8 96 0.0021 25.7 11.5 76 42-129 46-134 (290)
416 KOG3178 Hydroxyindole-O-methyl 60.8 10 0.00022 33.5 3.4 23 42-64 178-200 (342)
417 PF03435 Saccharop_dh: Sacchar 60.8 46 0.001 29.0 7.7 70 45-130 1-78 (386)
418 PF03059 NAS: Nicotianamine sy 60.7 21 0.00046 30.5 5.3 67 42-128 121-201 (276)
419 PRK06113 7-alpha-hydroxysteroi 60.6 72 0.0016 25.5 8.4 77 41-129 10-98 (255)
420 PRK07576 short chain dehydroge 60.5 90 0.002 25.3 9.8 76 41-128 8-95 (264)
421 PF02636 Methyltransf_28: Puta 60.4 28 0.00061 28.6 6.0 42 43-89 20-61 (252)
422 PRK06482 short chain dehydroge 60.3 80 0.0017 25.6 8.6 76 44-131 4-88 (276)
423 PRK12745 3-ketoacyl-(acyl-carr 60.2 41 0.0009 26.7 6.8 74 44-129 4-90 (256)
424 PRK06997 enoyl-(acyl carrier p 60.1 29 0.00064 28.3 6.0 77 42-129 6-94 (260)
425 PRK09134 short chain dehydroge 59.9 89 0.0019 25.0 9.4 77 41-129 8-97 (258)
426 PLN02668 indole-3-acetate carb 59.8 7.5 0.00016 34.8 2.5 18 42-59 64-81 (386)
427 PRK08226 short chain dehydroge 59.8 89 0.0019 25.0 9.9 77 42-130 6-93 (263)
428 PRK10538 malonic semialdehyde 59.8 37 0.00079 27.2 6.5 74 44-129 2-84 (248)
429 PRK08265 short chain dehydroge 59.6 92 0.002 25.1 10.4 76 42-129 6-90 (261)
430 PRK05884 short chain dehydroge 59.5 34 0.00074 27.2 6.2 73 44-129 2-79 (223)
431 PRK06139 short chain dehydroge 59.5 79 0.0017 27.1 8.8 79 42-132 7-97 (330)
432 PRK07578 short chain dehydroge 59.3 61 0.0013 24.9 7.5 64 44-129 2-65 (199)
433 PRK05866 short chain dehydroge 58.6 45 0.00099 27.8 7.0 77 42-130 40-128 (293)
434 PRK08303 short chain dehydroge 58.4 61 0.0013 27.4 7.8 75 41-127 7-103 (305)
435 PRK08415 enoyl-(acyl carrier p 58.3 39 0.00085 27.9 6.5 78 41-129 4-93 (274)
436 PRK08324 short chain dehydroge 57.8 82 0.0018 29.9 9.3 79 41-131 421-510 (681)
437 PRK08628 short chain dehydroge 57.5 96 0.0021 24.7 9.7 77 41-129 6-93 (258)
438 PRK09242 tropinone reductase; 57.1 97 0.0021 24.7 8.6 77 41-129 8-98 (257)
439 PRK07035 short chain dehydroge 57.1 52 0.0011 26.2 6.9 75 42-128 8-94 (252)
440 PRK09291 short chain dehydroge 56.7 78 0.0017 25.1 7.9 72 43-130 3-84 (257)
441 KOG2811 Uncharacterized conser 56.6 28 0.00061 31.3 5.5 64 33-106 173-247 (420)
442 PRK06935 2-deoxy-D-gluconate 3 56.5 1E+02 0.0022 24.6 9.3 77 41-129 14-101 (258)
443 PRK13699 putative methylase; P 56.3 16 0.00035 29.9 3.8 49 26-89 146-196 (227)
444 PRK08261 fabG 3-ketoacyl-(acyl 55.9 93 0.002 27.5 8.9 77 41-129 209-294 (450)
445 PRK05855 short chain dehydroge 55.9 1.1E+02 0.0025 27.3 9.6 80 42-133 315-406 (582)
446 KOG1227 Putative methyltransfe 55.7 3.8 8.3E-05 35.8 0.0 84 31-136 181-279 (351)
447 PF03492 Methyltransf_7: SAM d 54.9 12 0.00026 32.6 2.9 21 41-61 16-36 (334)
448 TIGR03451 mycoS_dep_FDH mycoth 54.9 35 0.00075 29.2 5.8 71 39-125 174-251 (358)
449 PRK08416 7-alpha-hydroxysteroi 54.6 71 0.0015 25.7 7.4 77 41-129 7-97 (260)
450 PRK07067 sorbitol dehydrogenas 54.6 1.1E+02 0.0024 24.4 9.5 76 42-129 6-90 (257)
451 PRK05599 hypothetical protein; 54.5 62 0.0013 26.0 7.0 73 44-129 2-87 (246)
452 PRK12429 3-hydroxybutyrate deh 54.3 1.1E+02 0.0023 24.2 8.9 76 42-129 4-91 (258)
453 PLN02427 UDP-apiose/xylose syn 54.2 1.4E+02 0.0031 25.7 11.3 72 42-129 14-96 (386)
454 PRK13656 trans-2-enoyl-CoA red 54.1 70 0.0015 28.9 7.7 79 40-130 39-142 (398)
455 PRK07097 gluconate 5-dehydroge 54.1 1.1E+02 0.0025 24.5 9.6 77 41-129 9-97 (265)
456 PRK06484 short chain dehydroge 54.0 49 0.0011 29.7 6.9 77 41-129 4-89 (520)
457 PLN02650 dihydroflavonol-4-red 53.9 98 0.0021 26.2 8.5 71 43-130 6-88 (351)
458 COG1087 GalE UDP-glucose 4-epi 53.0 37 0.00081 29.7 5.6 58 78-138 24-86 (329)
459 PRK12767 carbamoyl phosphate s 53.0 53 0.0012 27.5 6.6 71 43-126 2-76 (326)
460 PRK05653 fabG 3-ketoacyl-(acyl 52.9 63 0.0014 25.2 6.7 76 42-129 5-92 (246)
461 PRK03659 glutathione-regulated 52.7 20 0.00043 33.7 4.2 68 43-127 401-472 (601)
462 PRK07985 oxidoreductase; Provi 52.0 95 0.0021 25.8 7.9 77 41-129 48-138 (294)
463 PRK08017 oxidoreductase; Provi 51.9 55 0.0012 26.0 6.3 74 44-129 4-84 (256)
464 TIGR02632 RhaD_aldol-ADH rhamn 51.6 1.1E+02 0.0023 29.3 8.9 78 42-131 414-505 (676)
465 PRK06500 short chain dehydroge 51.2 1.2E+02 0.0026 23.8 8.6 76 42-129 6-90 (249)
466 PF11899 DUF3419: Protein of u 51.1 26 0.00055 31.3 4.5 36 39-89 33-68 (380)
467 PRK09496 trkA potassium transp 50.9 34 0.00074 30.2 5.3 69 42-127 231-305 (453)
468 PRK06914 short chain dehydroge 50.3 1.3E+02 0.0029 24.2 10.1 78 42-131 3-93 (280)
469 PRK12742 oxidoreductase; Provi 50.3 98 0.0021 24.2 7.4 75 42-130 6-86 (237)
470 PRK05854 short chain dehydroge 50.2 1.5E+02 0.0033 24.8 12.7 77 41-129 13-103 (313)
471 PRK07831 short chain dehydroge 50.0 1.3E+02 0.0029 24.0 9.0 78 41-129 16-107 (262)
472 PRK12428 3-alpha-hydroxysteroi 50.0 36 0.00077 27.3 4.9 51 78-130 9-59 (241)
473 COG1063 Tdh Threonine dehydrog 49.4 59 0.0013 28.2 6.4 72 40-125 167-244 (350)
474 PRK08862 short chain dehydroge 49.1 75 0.0016 25.4 6.6 76 41-128 4-92 (227)
475 PRK08642 fabG 3-ketoacyl-(acyl 48.9 85 0.0018 24.8 6.9 75 42-128 5-90 (253)
476 COG5459 Predicted rRNA methyla 48.2 11 0.00024 33.9 1.6 17 42-58 114-130 (484)
477 PRK07523 gluconate 5-dehydroge 48.2 1.4E+02 0.003 23.7 9.5 78 41-130 9-98 (255)
478 KOG3987 Uncharacterized conser 48.1 8.3 0.00018 32.2 0.8 21 43-63 114-134 (288)
479 KOG1331 Predicted methyltransf 47.7 23 0.00049 30.6 3.4 62 40-126 44-110 (293)
480 PRK10217 dTDP-glucose 4,6-dehy 47.6 1.4E+02 0.0029 25.3 8.3 72 44-130 3-85 (355)
481 KOG1501 Arginine N-methyltrans 47.4 21 0.00045 33.1 3.3 30 44-87 69-98 (636)
482 PRK09496 trkA potassium transp 46.8 70 0.0015 28.2 6.6 67 44-127 2-73 (453)
483 PRK07577 short chain dehydroge 46.3 1.4E+02 0.003 23.2 10.3 75 42-129 3-78 (234)
484 COG4262 Predicted spermidine s 45.8 69 0.0015 29.1 6.2 69 40-128 288-374 (508)
485 KOG1269 SAM-dependent methyltr 45.6 11 0.00025 33.4 1.3 37 39-89 108-144 (364)
486 PLN02780 ketoreductase/ oxidor 45.3 1.1E+02 0.0024 26.0 7.4 78 41-130 52-143 (320)
487 PRK12859 3-ketoacyl-(acyl-carr 44.5 1.6E+02 0.0036 23.5 9.5 78 41-129 5-106 (256)
488 PRK07041 short chain dehydroge 44.5 1.5E+02 0.0032 23.0 8.5 66 51-129 5-79 (230)
489 PRK09424 pntA NAD(P) transhydr 44.3 49 0.0011 30.7 5.3 67 7-89 125-199 (509)
490 PRK06128 oxidoreductase; Provi 44.0 1.9E+02 0.004 24.0 11.4 76 42-129 55-144 (300)
491 PRK12320 hypothetical protein; 43.8 1.3E+02 0.0029 29.1 8.3 67 45-129 3-70 (699)
492 PLN02986 cinnamyl-alcohol dehy 43.8 1.9E+02 0.0041 24.0 11.3 73 41-130 4-88 (322)
493 PF05891 Methyltransf_PK: AdoM 43.6 13 0.00028 30.7 1.3 62 42-125 56-128 (218)
494 PRK06720 hypothetical protein; 43.4 1.4E+02 0.0031 23.0 7.2 75 41-129 15-103 (169)
495 PRK03562 glutathione-regulated 43.0 32 0.0007 32.5 4.0 68 42-126 400-471 (621)
496 PRK05565 fabG 3-ketoacyl-(acyl 42.7 1.6E+02 0.0035 22.9 8.0 77 43-131 6-95 (247)
497 PRK10084 dTDP-glucose 4,6 dehy 42.5 1.1E+02 0.0023 25.8 6.9 73 44-130 2-84 (352)
498 PRK06924 short chain dehydroge 42.5 1.3E+02 0.0027 23.8 7.0 59 44-114 3-69 (251)
499 PRK12939 short chain dehydroge 42.5 1.6E+02 0.0036 23.0 12.4 76 42-129 7-94 (250)
500 COG0569 TrkA K+ transport syst 42.3 73 0.0016 26.0 5.6 67 44-127 2-74 (225)
No 1
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=4.5e-43 Score=286.18 Aligned_cols=168 Identities=72% Similarity=1.093 Sum_probs=151.2
Q ss_pred CCCCcCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe
Q 030299 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (179)
Q Consensus 1 ~~~~~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (179)
||++||..||.|||+||++|||.|+||||+++|+.|++++.-.+|+||||+||+|||+|.+++..+...+ ++.+-+
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~----~~~~~k 76 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSS----GERDKK 76 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCc----chhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999875321111 122237
Q ss_pred EEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------
Q 030299 81 IVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF------- 153 (179)
Q Consensus 81 VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~------- 153 (179)
|||||++||.|++||..+|+|||...+.+++.++|.+++.|+|+|||+|+++|..+.|+++|.+|+++||+..
T Consensus 77 IVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 77 IVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred EEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred --HH--------HHHHH-HHHHhhceEEEe
Q 030299 154 --FI--------YELVF-CLRQLLQYVILD 172 (179)
Q Consensus 154 --~~--------~~~~~-~~~~~f~~v~~~ 172 (179)
|+ .+++| +|+.+|++|.+.
T Consensus 157 g~FVaKifRg~~tslLysql~~ff~kv~~~ 186 (294)
T KOG1099|consen 157 GSFVAKIFRGRDTSLLYSQLRKFFKKVTCA 186 (294)
T ss_pred CeeehhhhccCchHHHHHHHHHHhhceeee
Confidence 21 56775 889999999864
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-41 Score=273.50 Aligned_cols=157 Identities=41% Similarity=0.609 Sum_probs=148.2
Q ss_pred cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 030299 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav 84 (179)
.+++.|+|++.|+++||||||+|||.||+++|+++++|++|+||||+||||||+++++++. .+.|+|+
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~------------~~~ivav 76 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA------------GGKIVAV 76 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC------------CCcEEEE
Confidence 5699999999999999999999999999999999999999999999999999999999974 5779999
Q ss_pred eCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH----------
Q 030299 85 DLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF---------- 154 (179)
Q Consensus 85 D~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~---------- 154 (179)
|+.||+|++||.++|+|+++.++.+.|.+.+++.++|+|+|||+|+++|.|+.||..+..|+..|+.++.
T Consensus 77 Di~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 77 DILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 9999999999999999999999999999999988899999999999999999999999999999998762
Q ss_pred --------HHHHHHHHHHhhceEEEee
Q 030299 155 --------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 --------~~~~~~~~~~~f~~v~~~~ 173 (179)
...+++.++++|++|.+..
T Consensus 157 ~K~fqg~~~~~~l~~~~~~F~~v~~~K 183 (205)
T COG0293 157 AKVFQGEDFEDLLKALRRLFRKVKIFK 183 (205)
T ss_pred EEEEeCCCHHHHHHHHHHhhceeEEec
Confidence 2678999999999999764
No 3
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4e-38 Score=250.53 Aligned_cols=157 Identities=30% Similarity=0.462 Sum_probs=144.2
Q ss_pred cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 030299 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav 84 (179)
.||.+|||++.|+.+.|||||||||+||++||++|+|+++|||+||+||.|||++.++.++ .+.|+||
T Consensus 33 ~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p------------~g~v~gV 100 (232)
T KOG4589|consen 33 TRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNP------------NGMVLGV 100 (232)
T ss_pred HHhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCC------------CceEEEE
Confidence 4689999999999999999999999999999999999999999999999999999999964 7999999
Q ss_pred eCCCCCCCCCeeEEec-cccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH---------
Q 030299 85 DLQPMAPIEGVIQVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF--------- 154 (179)
Q Consensus 85 D~~~~~~~~~v~~i~g-Di~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~--------- 154 (179)
|+.++.|++|+.++++ |++|+++..+|.+.++++++|+|+|||+|+++|.+..||..+++||..+|..++
T Consensus 101 Dllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~f 180 (232)
T KOG4589|consen 101 DLLHIEPPEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSF 180 (232)
T ss_pred eeeeccCCCCcccccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEE
Confidence 9999999999999998 999999999999999999999999999999999999999999999999986542
Q ss_pred ---------HHHHHHHHHHhhceEEEee
Q 030299 155 ---------IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ---------~~~~~~~~~~~f~~v~~~~ 173 (179)
...+.=-|...|++|.+.+
T Consensus 181 vcK~w~g~e~~~l~r~l~~~f~~Vk~vK 208 (232)
T KOG4589|consen 181 VCKLWDGSEEALLQRRLQAVFTNVKKVK 208 (232)
T ss_pred EEEEecCCchHHHHHHHHHHhhhcEeeC
Confidence 1345566788888887654
No 4
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=100.00 E-value=3e-37 Score=278.35 Aligned_cols=160 Identities=40% Similarity=0.606 Sum_probs=149.3
Q ss_pred CCCC---cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCC
Q 030299 1 MGKA---SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGD 77 (179)
Q Consensus 1 ~~~~---~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~ 77 (179)
|||+ +++|.|.||++|++.||||||||||++|+.+|.+|.++..||||||+||||.|++.+.+|.
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv------------ 68 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPV------------ 68 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCC------------
Confidence 8974 7899999999999999999999999999999999999999999999999999999999986
Q ss_pred CCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH--H-
Q 030299 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF--F- 154 (179)
Q Consensus 78 ~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~--~- 154 (179)
++.|||||+.|+.|++||...+.||+..+....+.+.+...++|+||+||+||++|.|..|.+.|..|.+.||+.+ |
T Consensus 69 ~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l 148 (780)
T KOG1098|consen 69 GSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFL 148 (780)
T ss_pred CceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7999999999999999999999999998888778777777889999999999999999999999999999999975 1
Q ss_pred ------H---------HHHHHHHHHhhceEEEe
Q 030299 155 ------I---------YELVFCLRQLLQYVILD 172 (179)
Q Consensus 155 ------~---------~~~~~~~~~~f~~v~~~ 172 (179)
+ ..|+|.+.|||.+|...
T Consensus 149 ~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~t 181 (780)
T KOG1098|consen 149 AKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEAT 181 (780)
T ss_pred HhcCccccccccCCcchHHHHHHHHHHHHHHhc
Confidence 1 68999999999998754
No 5
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.97 E-value=5.8e-30 Score=208.25 Aligned_cols=158 Identities=28% Similarity=0.378 Sum_probs=138.3
Q ss_pred cCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE
Q 030299 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI 84 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav 84 (179)
.|+.+|+|++.++..+||+|++|||.|+++++++++++.+|||||||||+|+++++++.++ .+.|+|+
T Consensus 15 ~~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~------------~~~V~aV 82 (209)
T PRK11188 15 QEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD------------KGRVIAC 82 (209)
T ss_pred HHhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCC------------CceEEEE
Confidence 4578899999999999999999999999999999999999999999999999999999753 5799999
Q ss_pred eCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH----------
Q 030299 85 DLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF---------- 154 (179)
Q Consensus 85 D~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~---------- 154 (179)
|+++|.+.++++++++|+++.++..++.+.+.+.+||+|+||++|..+|.+..|+..+..+...+|..+.
T Consensus 83 Di~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~v 162 (209)
T PRK11188 83 DILPMDPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFV 162 (209)
T ss_pred ecccccCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9999988899999999999988888887777778999999999999999888787666666666666431
Q ss_pred --------HHHHHHHHHHhhceEEEeee
Q 030299 155 --------IYELVFCLRQLLQYVILDGS 174 (179)
Q Consensus 155 --------~~~~~~~~~~~f~~v~~~~~ 174 (179)
+..+++.+++.|+.|++..-
T Consensus 163 i~~~~~~~~~~~l~~l~~~f~~v~~~Kp 190 (209)
T PRK11188 163 VKVFQGEGFDEYLREIRSLFTKVKVRKP 190 (209)
T ss_pred EEEecCcCHHHHHHHHHhCceEEEEECC
Confidence 24577999999999998653
No 6
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.97 E-value=1e-30 Score=206.71 Aligned_cols=142 Identities=40% Similarity=0.604 Sum_probs=118.0
Q ss_pred CcchhhhcHHhHHHHhCCCCCC--CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEE
Q 030299 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQV 98 (179)
Q Consensus 21 ~~sRaa~KL~eid~~~~ll~~g--~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i 98 (179)
|||||||||.|++++|++++++ .+||||||+|||||++++++..+ .++|+|+|+.++.+++++.++
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~------------~~~v~avDl~~~~~~~~~~~i 68 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGP------------AGRVVAVDLGPMDPLQNVSFI 68 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTT------------EEEEEEEESSSTGS-TTEEBT
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccc------------cceEEEEeccccccccceeee
Confidence 7999999999999999988765 89999999999999999998732 589999999999989999999
Q ss_pred eccccchhhHHHHHhhcCC--CCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH------------------HHHH
Q 030299 99 QGDITNARTAEVVIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF------------------IYEL 158 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~--~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~------------------~~~~ 158 (179)
++|+++.++.+.+.+.+.+ +++|+|+|||+|+++|.++.|++.+.+|++.+|..++ ...+
T Consensus 69 ~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~ 148 (181)
T PF01728_consen 69 QGDITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEEL 148 (181)
T ss_dssp TGGGEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHH
T ss_pred ecccchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHH
Confidence 9999999888888887653 6899999999999999999999999999999998652 1478
Q ss_pred HHHHHHhhceEEEeee
Q 030299 159 VFCLRQLLQYVILDGS 174 (179)
Q Consensus 159 ~~~~~~~f~~v~~~~~ 174 (179)
++.++++|++|.+...
T Consensus 149 ~~~l~~~F~~v~~~Kp 164 (181)
T PF01728_consen 149 IYLLKRCFSKVKIVKP 164 (181)
T ss_dssp HHHHHHHHHHEEEEE-
T ss_pred HHHHHhCCeEEEEEEC
Confidence 8999999999998764
No 7
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.90 E-value=2.7e-22 Score=159.67 Aligned_cols=152 Identities=36% Similarity=0.568 Sum_probs=124.2
Q ss_pred chHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 10 d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
|.||+.+++++||+|++|||.++++++..+++|.+|||+|||||+++..++.+... .++|+|+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~------------~~~v~~vDis~~ 68 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG------------KGRVIAVDLQPM 68 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCC------------CceEEEEecccc
Confidence 57899999999999999999999999999999999999999999999999988742 478999999997
Q ss_pred CCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHHH---------------
Q 030299 90 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQFF--------------- 154 (179)
Q Consensus 90 ~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~~--------------- 154 (179)
...+++.++++|+.+.+....+.+.+++.+||+|++|++|+.+|.|..++..+..+...++..+.
T Consensus 69 ~~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 69 KPIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ccCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 66678999999999877666666666667899999999998899999988665444444443220
Q ss_pred ---HHHHHHHHHHhhceEEEee
Q 030299 155 ---IYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 155 ---~~~~~~~~~~~f~~v~~~~ 173 (179)
+...+..+++.|+.+.+-.
T Consensus 149 ~~~~~~~l~~l~~~~~~~~~~~ 170 (188)
T TIGR00438 149 GEEIDEYLNELRKLFEKVKVTK 170 (188)
T ss_pred CccHHHHHHHHHhhhceEEEeC
Confidence 2456677777887777543
No 8
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.89 E-value=2.3e-24 Score=192.92 Aligned_cols=168 Identities=21% Similarity=0.320 Sum_probs=139.8
Q ss_pred CcCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCC--CC----CC-----------EEEEEccCCChHHHHHHHHhCCC
Q 030299 4 ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF--EG----VK-----------RVVDLCAAPGSWSQVLSRKLYLP 66 (179)
Q Consensus 4 ~~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll--~~----g~-----------~VlDLgagpGg~s~~l~~~~~~~ 66 (179)
.+|.|+||| ++++..-|.+|||.|++|+|..++.+ +| |. .+.|+||||||||+|.++|-.|+
T Consensus 214 rARtRaNPy-EtIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~ 292 (845)
T KOG3673|consen 214 RARTRANPY-ETIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWN 292 (845)
T ss_pred HHhhcCChH-HHHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhc
Confidence 378999998 99999999999999999999998864 33 11 45899999999999999999999
Q ss_pred CCCCC-CCCCCCCCeE---EEEeCCCCCCCCCeeEEeccccchhhHHHHHhhc----CCCCccEEeeCCCCCCCCCCccc
Q 030299 67 AKLSP-DSREGDLPLI---VAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF----DGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 67 ~~~~~-~~~~~~~~~V---vavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~----~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
+|++| |+++.++.+. .|.-....++.+|+ -..|||+++.++..+.++. ++.+||+.++||.+++.|++|+|
T Consensus 293 AKGFGfTL~G~nDFKLekF~aaS~e~FetfYG~-k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQ 371 (845)
T KOG3673|consen 293 AKGFGFTLAGKNDFKLEKFTAASQEFFETFYGT-KDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQ 371 (845)
T ss_pred cccceeEeccCCccchhhhhhcCHHhhhccccc-cCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHH
Confidence 99999 9988777654 33322224567785 4689999999887777654 34679999999999999999999
Q ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhhceEEEee
Q 030299 139 EFVQSQLILAVSIQF--------------------FIYELVFCLRQLLQYVILDG 173 (179)
Q Consensus 139 ~~~q~~L~~~AL~~~--------------------~~~~~~~~~~~~f~~v~~~~ 173 (179)
+.++.+|+++.+-++ |+++|||+||.+|+.|++-+
T Consensus 372 EILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~K 426 (845)
T KOG3673|consen 372 EILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHK 426 (845)
T ss_pred HHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhccc
Confidence 999999999887654 36999999999999998753
No 9
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.62 E-value=1.7e-15 Score=131.14 Aligned_cols=88 Identities=32% Similarity=0.399 Sum_probs=73.5
Q ss_pred hhCCcchhhhcHHhHHHHh-------CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC
Q 030299 18 EEGWRARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (179)
Q Consensus 18 ~~~~~sRaa~KL~eid~~~-------~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~ 90 (179)
..+-+|||++||.|+...| ..+.+|+++|||||+|||||++++++ +.+|+|||..+|.
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r---------------G~~V~AVD~g~l~ 245 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR---------------GMFVTAVDNGPMA 245 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc---------------CCEEEEEechhcC
Confidence 3367899999999995554 46789999999999999999999987 3699999999987
Q ss_pred C----CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 91 P----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 91 ~----~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ .++|++.++|.+...+ ..+++|+|+|||.
T Consensus 246 ~~L~~~~~V~h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 246 QSLMDTGQVEHLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred HhhhCCCCEEEEeccCcccCC--------CCCCCCEEEEecc
Confidence 4 4689999999877542 1458999999996
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.32 E-value=2.5e-12 Score=105.21 Aligned_cols=110 Identities=24% Similarity=0.273 Sum_probs=87.7
Q ss_pred CchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 9 ~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.|.|.+-+ +-|+|.|..|+. .-. +.+..+|.|||||||.-|+.|++|.+ ...|.|+|.|+
T Consensus 5 p~~Yl~F~---~eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP-------------~A~i~GiDsS~ 64 (257)
T COG4106 5 PDQYLQFE---DERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRWP-------------DAVITGIDSSP 64 (257)
T ss_pred HHHHHHHH---HhccCcHHHHHh---hCC-ccccceeeecCCCCCHHHHHHHHhCC-------------CCeEeeccCCH
Confidence 35554433 459999999884 222 35567999999999999999999987 68999999998
Q ss_pred -C-----CCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 89 -M-----APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 89 -~-----~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
| ..+++++|.++|+.+.. ++...|+++++.. -+|..||...+..+...|.
T Consensus 65 ~Mla~Aa~rlp~~~f~~aDl~~w~---------p~~~~dllfaNAv----lqWlpdH~~ll~rL~~~L~ 120 (257)
T COG4106 65 AMLAKAAQRLPDATFEEADLRTWK---------PEQPTDLLFANAV----LQWLPDHPELLPRLVSQLA 120 (257)
T ss_pred HHHHHHHHhCCCCceecccHhhcC---------CCCccchhhhhhh----hhhccccHHHHHHHHHhhC
Confidence 3 25789999999999975 4568999999764 6999999887777776664
No 11
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.4e-11 Score=101.83 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=83.6
Q ss_pred HhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----
Q 030299 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----- 91 (179)
Q Consensus 17 ~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----- 91 (179)
.+..|+||+++||....+.|++.-+|..|||+|++|||||++++++- ..+|+|+|....+-
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--------------Ak~VyavDVG~~Ql~~kLR 120 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--------------AKHVYAVDVGYGQLHWKLR 120 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--------------CcEEEEEEccCCccCHhHh
Confidence 35779999999999999999999999999999999999999999984 37999999998541
Q ss_pred -CCCeeEE-eccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 92 -IEGVIQV-QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 92 -~~~v~~i-~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
-++|... ..|++..... .+.+ .+|++++|.+ +.|+.+++.++.
T Consensus 121 ~d~rV~~~E~tN~r~l~~~-----~~~~-~~d~~v~DvS-----------FISL~~iLp~l~ 165 (245)
T COG1189 121 NDPRVIVLERTNVRYLTPE-----DFTE-KPDLIVIDVS-----------FISLKLILPALL 165 (245)
T ss_pred cCCcEEEEecCChhhCCHH-----Hccc-CCCeEEEEee-----------hhhHHHHHHHHH
Confidence 3455444 6677765431 2333 7899999987 778888887765
No 12
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.16 E-value=1.9e-10 Score=96.50 Aligned_cols=93 Identities=23% Similarity=0.147 Sum_probs=69.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|..+++.++. .+.|+|+|+++.. .+.++.++.+|..+...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~------------~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 136 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKN------------EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA- 136 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCC------------CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-
Confidence 67899999999999999999998863 5799999999831 24578888888766421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCcccH---------------HHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMDE---------------FVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~---------------~~q~~L~~~AL~~ 152 (179)
....||.|++|.+|+.+|.+..+. ..|.+++..|++.
T Consensus 137 -------~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 137 -------AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred -------hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 124699999999999888653221 2466666666654
No 13
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.11 E-value=1.7e-10 Score=95.42 Aligned_cols=71 Identities=25% Similarity=0.207 Sum_probs=57.2
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C-C----CCC
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M-A----PIE 93 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~-~----~~~ 93 (179)
.|+||+++||.++.+.+++..++.+|||+|||||+||..++++ + ..+|+|+|+++ | . ..+
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g-------------a~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G-------------AKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C-------------CCEEEEEeCCHHHHHHHHhcCC
Confidence 4999999999999999987678899999999999999999987 3 36899999999 3 2 223
Q ss_pred Cee-EEeccccc
Q 030299 94 GVI-QVQGDITN 104 (179)
Q Consensus 94 ~v~-~i~gDi~~ 104 (179)
.+. +...|++.
T Consensus 120 ~v~~~~~~ni~~ 131 (228)
T TIGR00478 120 RVKVLERTNIRY 131 (228)
T ss_pred CeeEeecCCccc
Confidence 433 34556663
No 14
>PTZ00146 fibrillarin; Provisional
Probab=99.10 E-value=2.6e-10 Score=97.32 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=58.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++++++|||||||||.||+++++.+++ .+.|+|||+++. ...+||.++.+|++.+....
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~------------~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGP------------EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCC------------CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh
Confidence 589999999999999999999999864 589999999972 12369999999998753211
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+....||+|++|++
T Consensus 198 -----~~~~~vDvV~~Dva 211 (293)
T PTZ00146 198 -----MLVPMVDVIFADVA 211 (293)
T ss_pred -----cccCCCCEEEEeCC
Confidence 12247999999995
No 15
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.08 E-value=6.7e-10 Score=99.43 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||+.|.++++.++. .+.|+|+|+++.. .+.+++++++|.++...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~------------~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKD------------QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-
Confidence 57899999999999999999998853 5899999999831 24567888999887531
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
+..+.||.|++|.+|+..|.+..+ ...|.+++..+.+.
T Consensus 303 ------~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 303 ------YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred ------hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 123579999999999999874321 12567777666653
No 16
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.05 E-value=1e-09 Score=99.32 Aligned_cols=94 Identities=21% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|++|||+||||||.|.+++..++. .+.|+|+|+++-. .+.++.....|.+...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~------------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNN------------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh--
Confidence 68999999999999999999999864 6899999999842 2467777777776532
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
+.++ ..||.|+.|.+|+.+|.+-.+ ..+|.+++..|+.+
T Consensus 178 ----~~~~-~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~ 231 (470)
T PRK11933 178 ----AALP-ETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHA 231 (470)
T ss_pred ----hhch-hhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1233 479999999999999985433 24577777777764
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.03 E-value=1.1e-09 Score=79.02 Aligned_cols=65 Identities=31% Similarity=0.386 Sum_probs=53.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------CCCCCeeEEeccc-cchhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------APIEGVIQVQGDI-TNART 107 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~~~~~v~~i~gDi-~~~~~ 107 (179)
|+.+|||||||+|.++.+++++.+ ..+|+|+|++|. ...++++++++|+ ...+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-------------GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD- 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-------------TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-
Confidence 678999999999999999999655 589999999983 1246899999999 3332
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+||+|++++
T Consensus 67 --------~~~~~D~v~~~~ 78 (112)
T PF12847_consen 67 --------FLEPFDLVICSG 78 (112)
T ss_dssp --------TSSCEEEEEECS
T ss_pred --------cCCCCCEEEECC
Confidence 235799999987
No 18
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2e-09 Score=94.26 Aligned_cols=97 Identities=28% Similarity=0.349 Sum_probs=72.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+||.+|||+||+|||.|.++++.+.. ....|+|+|.++.. ...|+..+..|.......
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~-----------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMEN-----------EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCC-----------CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 67999999999999999999999863 13456999999831 356777778887654311
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCcc--c-------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM--D-------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~--d-------------~~~q~~L~~~AL~~ 152 (179)
...+.+||.||.|.+|+.+|.+-. + +..|.+|+..|+..
T Consensus 224 -----~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~ 277 (355)
T COG0144 224 -----LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL 277 (355)
T ss_pred -----ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 012236999999999999999621 1 25688888888875
No 19
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=2.3e-09 Score=95.87 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=62.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||++|.++++.++. .++|+|+|+++.. .+.+|+++.+|.++....
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~------------~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGD------------QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCC------------CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 57899999999999999999998763 5899999999831 245788899998875310
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
. ....+.||.|++|.+|+.+|.+
T Consensus 319 ---~-~~~~~~fD~Vl~DaPCSg~G~~ 341 (434)
T PRK14901 319 ---K-PQWRGYFDRILLDAPCSGLGTL 341 (434)
T ss_pred ---c-ccccccCCEEEEeCCCCccccc
Confidence 0 0123579999999999888874
No 20
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=4.8e-09 Score=94.13 Aligned_cols=75 Identities=27% Similarity=0.338 Sum_probs=61.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+|.+|||+|||||++|.++++.++. .+.|+|+|+++.. .+.+++++.+|+.+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~------------~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQN------------RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCC------------CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 57889999999999999999998753 5799999999931 2456888899987742
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
++..||.|++|.+|+.+|.+
T Consensus 315 -------~~~~fD~Vl~D~Pcsg~g~~ 334 (445)
T PRK14904 315 -------PEEQPDAILLDAPCTGTGVL 334 (445)
T ss_pred -------cCCCCCEEEEcCCCCCcchh
Confidence 23579999999999888874
No 21
>PRK04266 fibrillarin; Provisional
Probab=98.93 E-value=4e-09 Score=87.03 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=56.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|.+|||+|||||.++.++++.++ .+.|+|+|+++. ...+|+.++.+|++++....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-------------~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-------------EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-------------CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 47899999999999999999999875 479999999982 12468999999998642111
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.+. ..||+|++|++
T Consensus 137 ----~l~-~~~D~i~~d~~ 150 (226)
T PRK04266 137 ----HVV-EKVDVIYQDVA 150 (226)
T ss_pred ----hcc-ccCCEEEECCC
Confidence 123 36999999975
No 22
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=2.4e-09 Score=90.97 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=70.7
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-Ce
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GV 95 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v 95 (179)
|+-.+.++++ |+||++|||||||.|+.+.+++++.+ .+|+|+++|+.+ ..+ ++
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~--------------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v 124 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG--------------VTVVGVTLSEEQLAYAEKRIAARGLEDNV 124 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC--------------CEEEEeeCCHHHHHHHHHHHHHcCCCccc
Confidence 4444556666 49999999999999999999999974 799999999842 234 78
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHH
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 141 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~ 141 (179)
+++..|..+.+ ++||.|+|=+.+..-|..+.+.+.
T Consensus 125 ~v~l~d~rd~~-----------e~fDrIvSvgmfEhvg~~~~~~ff 159 (283)
T COG2230 125 EVRLQDYRDFE-----------EPFDRIVSVGMFEHVGKENYDDFF 159 (283)
T ss_pred EEEeccccccc-----------cccceeeehhhHHHhCcccHHHHH
Confidence 88888888853 359999999999888888777653
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.93 E-value=4.2e-09 Score=80.67 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=56.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||||||+|.++..++++..+ ..+|+|+|+++. ...++++++++|+++.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~------------~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~- 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNP------------GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQ- 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTT------------TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCG-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC------------CCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccc-
Confidence 46789999999999999999976543 589999999993 135689999999999542
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.++ ..||+|++++..
T Consensus 69 -----~~~-~~~D~I~~~~~l 83 (152)
T PF13847_consen 69 -----ELE-EKFDIIISNGVL 83 (152)
T ss_dssp -----CSS-TTEEEEEEESTG
T ss_pred -----ccC-CCeeEEEEcCch
Confidence 022 689999998765
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.91 E-value=1.7e-08 Score=82.12 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=56.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..+++..++ .+.|+|+|+++.. ..++++++++|+.+.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 109 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGP------------EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-- 109 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--
Confidence 67899999999999999999998753 5799999999731 2457899999998753
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|+++..
T Consensus 110 ------~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 110 ------FDDNSFDYVTIGFG 123 (231)
T ss_pred ------CCCCCccEEEEecc
Confidence 34568999998754
No 25
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.90 E-value=3e-09 Score=88.52 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=57.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
++|.+|||+|||||-++..+++..+ .++|+|+|+++ |- ...++++++||+.+.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--
Confidence 4899999999999999999999986 59999999998 31 1345999999999987
Q ss_pred HHHHhhcCCCCccEEeeC
Q 030299 109 EVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD 126 (179)
|++.+||+|.+.
T Consensus 115 ------f~D~sFD~vt~~ 126 (238)
T COG2226 115 ------FPDNSFDAVTIS 126 (238)
T ss_pred ------CCCCccCEEEee
Confidence 688999999874
No 26
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=8.2e-09 Score=92.50 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=60.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||||++|.++++++++ .++|+|+|+++.. .+.+++++++|+++...
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~------------~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~- 315 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKN------------TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE- 315 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-
Confidence 57889999999999999999998743 5899999999841 24568899999987421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
.++ +.||+|++|++++..|.
T Consensus 316 -----~~~-~~fD~Vl~D~Pcsg~G~ 335 (444)
T PRK14902 316 -----KFA-EKFDKILVDAPCSGLGV 335 (444)
T ss_pred -----hhc-ccCCEEEEcCCCCCCee
Confidence 123 57999999998877775
No 27
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.88 E-value=9.4e-09 Score=91.73 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~ 107 (179)
.+|.+|||+|||||++|.++++.++ .++|+|+|+++.. .+. .+.+..+|..+...
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 5789999999999999999999875 4899999999841 122 12335667654321
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.....+||.|++|++|+.+|..
T Consensus 304 ------~~~~~~fD~VllDaPcSg~G~~ 325 (426)
T TIGR00563 304 ------WAENEQFDRILLDAPCSATGVI 325 (426)
T ss_pred ------cccccccCEEEEcCCCCCCccc
Confidence 0134579999999999998873
No 28
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.88 E-value=5e-09 Score=86.97 Aligned_cols=84 Identities=31% Similarity=0.428 Sum_probs=62.3
Q ss_pred CCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCe
Q 030299 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGV 95 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v 95 (179)
..|.+...+|++. .. ..++.+|||||||+|.++..++++.+ ..+|+|+|+++.. ...++
T Consensus 12 ~~~~~~~~~ll~~---l~-~~~~~~vLDlGcG~G~~~~~l~~~~p-------------~~~v~gvD~s~~~~~~a~~~~~ 74 (255)
T PRK14103 12 DHRGRPFYDLLAR---VG-AERARRVVDLGCGPGNLTRYLARRWP-------------GAVIEALDSSPEMVAAARERGV 74 (255)
T ss_pred hHhhCHHHHHHHh---CC-CCCCCEEEEEcCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHhcCC
Confidence 3455666665532 22 25778999999999999999999864 4799999999831 23578
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.++++|+.+.. ++.+||+|++....
T Consensus 75 ~~~~~d~~~~~---------~~~~fD~v~~~~~l 99 (255)
T PRK14103 75 DARTGDVRDWK---------PKPDTDVVVSNAAL 99 (255)
T ss_pred cEEEcChhhCC---------CCCCceEEEEehhh
Confidence 89999987642 24589999997653
No 29
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.5e-08 Score=90.46 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=60.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~ 109 (179)
++|.+|||+|||||++|..++++.+ .+.|+|+|+++.. . -.++.++.+|+++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~-- 307 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQ-- 307 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchh--
Confidence 5789999999999999999999874 3799999999841 0 1136788999987432
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
.+.+.+||.|++|.+|+.+|.+
T Consensus 308 ----~~~~~~fD~Vl~D~Pcs~~G~~ 329 (427)
T PRK10901 308 ----WWDGQPFDRILLDAPCSATGVI 329 (427)
T ss_pred ----hcccCCCCEEEECCCCCccccc
Confidence 1234579999999999888763
No 30
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.87 E-value=4.7e-09 Score=89.22 Aligned_cols=94 Identities=24% Similarity=0.265 Sum_probs=70.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+|.+|||+||||||.|.++++.+.. .+.|+|+|+++.+ ...++..+..|.+.....
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~------------~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~ 151 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGN------------KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPK 151 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTT------------TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHH
T ss_pred cccccccccccCCCCceeeeeecccc------------hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccc
Confidence 57899999999999999999999974 6999999999831 345777777777765321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSI 151 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~ 151 (179)
.....||.|+.|.+|+.+|.+..+ ...|.+|+..|+.
T Consensus 152 ------~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 203 (283)
T PF01189_consen 152 ------KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAK 203 (283)
T ss_dssp ------HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHH
T ss_pred ------ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHH
Confidence 123469999999999999875422 1446666666665
No 31
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.87 E-value=2.5e-09 Score=88.57 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=46.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~----------~~~~~v~~i~gDi~~~~~ 107 (179)
.++|.+|||||||||-++..++++.++ .++|+|+|+++ | ....+++++++|+++.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~------------~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp- 111 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGP------------NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP- 111 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---------------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCC------------ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-
Confidence 367899999999999999999988764 68999999998 3 12458999999999986
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
++++.||+|++-.
T Consensus 112 -------~~d~sfD~v~~~f 124 (233)
T PF01209_consen 112 -------FPDNSFDAVTCSF 124 (233)
T ss_dssp -------S-TT-EEEEEEES
T ss_pred -------CCCCceeEEEHHh
Confidence 5678999999754
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.85 E-value=1.1e-08 Score=84.60 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|||||||+|.++..++++.+ ...|+|+|+++. +..+++.++.+|+.+..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~------- 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-------------AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ------- 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-------
Confidence 6788999999999999999998875 579999999983 23568889999987642
Q ss_pred hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+..+||+|+++... +|..|....++-+..+|+
T Consensus 90 --~~~~fD~v~~~~~l----~~~~d~~~~l~~~~~~Lk 121 (258)
T PRK01683 90 --PPQALDLIFANASL----QWLPDHLELFPRLVSLLA 121 (258)
T ss_pred --CCCCccEEEEccCh----hhCCCHHHHHHHHHHhcC
Confidence 23589999998653 354454333444444443
No 33
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.81 E-value=1.6e-08 Score=89.65 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+||.+|||+||+|||.|.+++..+.. .|.|+|.|.+... ...|......|....+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn------------~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKN------------TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcC------------CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccc-
Confidence 57999999999999999999999975 7999999988742 24677677777764321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCccc---------------HHHHHHHHHHHHHH
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDMD---------------EFVQSQLILAVSIQ 152 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d---------------~~~q~~L~~~AL~~ 152 (179)
+.++. +||.||.|++|+.+|.-..+ ..+|.+|.+.|+.+
T Consensus 307 ----~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l 360 (460)
T KOG1122|consen 307 ----KEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL 360 (460)
T ss_pred ----cccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh
Confidence 11454 89999999999998774332 36799999999875
No 34
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.79 E-value=1.6e-08 Score=82.12 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=58.5
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchh
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNAR 106 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~ 106 (179)
.+....+.++.+|||+|||+|.++..+++..+ ...|+|+|+++. +..+++.++++|+.++
T Consensus 35 ~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-------------~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~- 100 (204)
T TIGR03587 35 ARALNRLPKIASILELGANIGMNLAALKRLLP-------------FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDP- 100 (204)
T ss_pred HHHHHhcCCCCcEEEEecCCCHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCC-
Confidence 33344456788999999999999999988764 478999999983 1246788889998872
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++++||+|++.+..
T Consensus 101 --------~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 101 --------FKDNFFDLVLTKGVL 115 (204)
T ss_pred --------CCCCCEEEEEECChh
Confidence 356789999997753
No 35
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.75 E-value=5.1e-08 Score=81.73 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=56.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C-------C------CCCeeEEeccccc
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-------P------IEGVIQVQGDITN 104 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~-------~------~~~v~~i~gDi~~ 104 (179)
++++.+|||||||+|.++..++++.++ .+.|+|+|+++. - + .++++++++|+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~------------~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGS------------DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 367899999999999999999988753 479999999982 0 1 2478999999988
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+ ++++.||+|++...
T Consensus 139 lp--------~~~~sfD~V~~~~~ 154 (261)
T PLN02233 139 LP--------FDDCYFDAITMGYG 154 (261)
T ss_pred CC--------CCCCCEeEEEEecc
Confidence 65 46678999998654
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.73 E-value=3.9e-08 Score=79.20 Aligned_cols=86 Identities=22% Similarity=0.242 Sum_probs=62.6
Q ss_pred cchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCC
Q 030299 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEG 94 (179)
Q Consensus 22 ~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~ 94 (179)
+.+.+..|++....... .++.+|||||||+|.++..+++..+ ...|+++|+++.. ..++
T Consensus 16 q~~~~~~l~~~~~~~~~-~~~~~vLDlG~G~G~~~~~l~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~ 81 (240)
T TIGR02072 16 QREMAKRLLALLKEKGI-FIPASVLDIGCGTGYLTRALLKRFP-------------QAEFIALDISAGMLAQAKTKLSEN 81 (240)
T ss_pred HHHHHHHHHHHhhhhcc-CCCCeEEEECCCccHHHHHHHHhCC-------------CCcEEEEeChHHHHHHHHHhcCCC
Confidence 34455666665444332 3347899999999999999998864 4679999999831 1247
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.++.+|+.+.+ +++++||+|+++...
T Consensus 82 ~~~~~~d~~~~~--------~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 82 VQFICGDAEKLP--------LEDSSFDLIVSNLAL 108 (240)
T ss_pred CeEEecchhhCC--------CCCCceeEEEEhhhh
Confidence 889999998754 345689999998653
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.73 E-value=6.6e-08 Score=80.78 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+++|.+|||||||+|.++..++...+. .++|+|+|+++.. .+.+++++++|+.+.+
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~------------~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGP------------TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC------------CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-
Confidence 467899999999999999988887753 5789999999831 2458889999997754
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++++.||+|+++...
T Consensus 142 -------~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 142 -------VADNSVDVIISNCVI 156 (272)
T ss_pred -------CCCCceeEEEEcCcc
Confidence 345689999998653
No 38
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.73 E-value=1.9e-08 Score=84.84 Aligned_cols=85 Identities=29% Similarity=0.330 Sum_probs=68.4
Q ss_pred CcchhhhcHHhHH-------HHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--
Q 030299 21 WRARSAFKLLQID-------EEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-- 91 (179)
Q Consensus 21 ~~sRaa~KL~eid-------~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-- 91 (179)
-+|||+.||.|.. +.-.-|++|+..+||||.|||||-.+.++ .-.|+|||-.+|.+
T Consensus 184 APSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr---------------~m~V~aVDng~ma~sL 248 (358)
T COG2933 184 APSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR---------------NMRVYAVDNGPMAQSL 248 (358)
T ss_pred CCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc---------------ceEEEEeccchhhhhh
Confidence 4899999998853 33345689999999999999999999887 36899999999964
Q ss_pred --CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 --IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 --~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
...|+....|-+...+ ...++|+++|||.
T Consensus 249 ~dtg~v~h~r~DGfk~~P--------~r~~idWmVCDmV 279 (358)
T COG2933 249 MDTGQVTHLREDGFKFRP--------TRSNIDWMVCDMV 279 (358)
T ss_pred hcccceeeeeccCccccc--------CCCCCceEEeehh
Confidence 3458888888887542 1357999999995
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.73 E-value=7.5e-08 Score=77.34 Aligned_cols=69 Identities=19% Similarity=0.119 Sum_probs=55.2
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccch
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNA 105 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~ 105 (179)
..++++.+|||+|||+|..+..++.+.+ .++|+|+|+++. ...++++++++|+.+.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~-------------~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~ 107 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARP-------------ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF 107 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCC-------------CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC
Confidence 3456789999999999999999988654 589999999983 1245799999999875
Q ss_pred hhHHHHHhhcCCCCccEEeeCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. . +++||+|+++.
T Consensus 108 ~--------~-~~~fDlV~~~~ 120 (187)
T PRK00107 108 G--------Q-EEKFDVVTSRA 120 (187)
T ss_pred C--------C-CCCccEEEEcc
Confidence 3 2 45899999974
No 40
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.71 E-value=2.6e-08 Score=84.44 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=57.8
Q ss_pred cHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCe
Q 030299 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGV 95 (179)
Q Consensus 28 KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v 95 (179)
|+..+.++.+ ++||++|||||||.|+++.+++++.+ .+|+|+++|+.+ .+ ..+
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g--------------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG--------------CHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH----------------EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC--------------cEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 3444455555 48999999999999999999999974 799999999842 23 358
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHH
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 140 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~ 140 (179)
++..+|..+.+ .+||.|+|=+....-|..+...+
T Consensus 115 ~v~~~D~~~~~-----------~~fD~IvSi~~~Ehvg~~~~~~~ 148 (273)
T PF02353_consen 115 EVRLQDYRDLP-----------GKFDRIVSIEMFEHVGRKNYPAF 148 (273)
T ss_dssp EEEES-GGG--------------S-SEEEEESEGGGTCGGGHHHH
T ss_pred EEEEeeccccC-----------CCCCEEEEEechhhcChhHHHHH
Confidence 88889988753 38999999887666666555443
No 41
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.69 E-value=7.6e-08 Score=69.96 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++++|||+|||+|.++.+++++.+ ..+|+|+|+++.. ..++++++.+|+.+...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-------------NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE- 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh-
Confidence 5678999999999999999999875 4799999999831 24578888888765221
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
....+||.|++++.
T Consensus 84 ------~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 84 ------DSLPEPDRVFIGGS 97 (124)
T ss_pred ------hhcCCCCEEEECCc
Confidence 11247999999764
No 42
>PLN02244 tocopherol O-methyltransferase
Probab=98.69 E-value=1.3e-07 Score=82.22 Aligned_cols=67 Identities=28% Similarity=0.329 Sum_probs=54.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
+++.+|||||||+|+++..++++.+ ..|+|+|+++.. .. ++++++++|+.+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--------------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--------------ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-
Confidence 5788999999999999999998763 699999999831 12 46899999998864
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++..+
T Consensus 182 -------~~~~~FD~V~s~~~ 195 (340)
T PLN02244 182 -------FEDGQFDLVWSMES 195 (340)
T ss_pred -------CCCCCccEEEECCc
Confidence 45678999998653
No 43
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.69 E-value=4.3e-08 Score=78.12 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=52.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|..+..++...+ .++|+|+|+++. ....+++++++|+.+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-------------~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-------------ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-------------CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---
Confidence 378999999999999999986643 578999999983 12457999999998742
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..++||+|++++
T Consensus 106 ------~~~~fD~I~s~~ 117 (181)
T TIGR00138 106 ------HEEQFDVITSRA 117 (181)
T ss_pred ------ccCCccEEEehh
Confidence 235899999975
No 44
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.68 E-value=1.2e-07 Score=79.61 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=64.1
Q ss_pred CCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC
Q 030299 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ 87 (179)
Q Consensus 8 ~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~ 87 (179)
.-+.|.++-...-+++...--...+.++.. ++++.+|||||||+|+.+.+++... ...|+|+|++
T Consensus 20 ~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~--------------~~~v~giD~s 84 (263)
T PTZ00098 20 GIKAYEFIFGEDYISSGGIEATTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY--------------GAHVHGVDIC 84 (263)
T ss_pred cchhHHHHhCCCCCCCCchHHHHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc--------------CCEEEEEECC
Confidence 344444444333334433222333444443 3788999999999999999998764 3699999999
Q ss_pred CCC---------CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeC
Q 030299 88 PMA---------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 88 ~~~---------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD 126 (179)
+.. ...++.++.+|+.+.+ ++++.||+|++.
T Consensus 85 ~~~~~~a~~~~~~~~~i~~~~~D~~~~~--------~~~~~FD~V~s~ 124 (263)
T PTZ00098 85 EKMVNIAKLRNSDKNKIEFEANDILKKD--------FPENTFDMIYSR 124 (263)
T ss_pred HHHHHHHHHHcCcCCceEEEECCcccCC--------CCCCCeEEEEEh
Confidence 831 1246889999998653 455689999984
No 45
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.67 E-value=2.7e-08 Score=80.20 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=59.1
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHH
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++++||.+|||||||.|....+|.+.. +....|+|+++.. --.|+.++|+|+.+-
T Consensus 8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~k--------------~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------ 67 (193)
T PF07021_consen 8 AEWIEPGSRVLDLGCGDGELLAYLKDEK--------------QVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------ 67 (193)
T ss_pred HHHcCCCCEEEecCCCchHHHHHHHHhc--------------CCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------
Confidence 4567999999999999999999998864 4789999999852 136899999999873
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
+..+++..||.|+..-
T Consensus 68 L~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 68 LADFPDQSFDYVILSQ 83 (193)
T ss_pred HhhCCCCCccEEehHh
Confidence 2347889999999843
No 46
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.67 E-value=8.8e-08 Score=77.75 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=56.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||||||+|.++..+++..+. .++|+++|+++.. ...+++++.+|..+...
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~------------~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGR------------DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCC------------CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 378999999999999999999998753 4789999999831 24689999999976421
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||+|++++++
T Consensus 143 --------~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 143 --------PLAPYDRIYVTAAG 156 (215)
T ss_pred --------ccCCCCEEEEcCCc
Confidence 23589999998753
No 47
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.64 E-value=1.2e-07 Score=77.16 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++++++|||+|||+|..+..+++..+. .++|+++|+++.. ...+++++.+|.....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~------------~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~- 140 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGK------------SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY- 140 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-
Confidence 378999999999999999999988753 5799999999831 2457999999987642
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+..+||+|+++++
T Consensus 141 -------~~~~~fD~I~~~~~ 154 (212)
T PRK13942 141 -------EENAPYDRIYVTAA 154 (212)
T ss_pred -------CcCCCcCEEEECCC
Confidence 13468999999875
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.63 E-value=9.8e-08 Score=78.77 Aligned_cols=65 Identities=23% Similarity=0.253 Sum_probs=50.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++.+|||+|||+|.++..++.+ ...|+|+|+++. +......++.+|+.+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-------- 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---------------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-------- 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---------------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc--------
Confidence 5679999999999999988764 368999999983 12234567899998754
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
++++.||+|+++.+
T Consensus 99 ~~~~~fD~V~s~~~ 112 (251)
T PRK10258 99 LATATFDLAWSNLA 112 (251)
T ss_pred CCCCcEEEEEECch
Confidence 35568999999765
No 49
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.61 E-value=2.5e-07 Score=72.63 Aligned_cols=106 Identities=27% Similarity=0.303 Sum_probs=69.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||||||+|..+..++++.+ ..+|+++|+++.. ..++++++.+|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-------------~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-------------DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-------------CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT----
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc----
Confidence 677999999999999999998865 4689999999942 244588999999874
Q ss_pred HHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------HH------HHHHHHHHHhhceEEEe
Q 030299 110 VVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------FI------YELVFCLRQLLQYVILD 172 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~~------~~~~~~~~~~f~~v~~~ 172 (179)
+++.+||+|+++.+.. .|. ........+++..|.+.. ++ ...+ ++++|..|++.
T Consensus 94 -----~~~~~fD~Iv~NPP~~-~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~--l~~~f~~~~~~ 160 (170)
T PF05175_consen 94 -----LPDGKFDLIVSNPPFH-AGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL--LKELFGDVEVV 160 (170)
T ss_dssp -----CCTTCEEEEEE---SB-TTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH--HHHHHS--EEE
T ss_pred -----ccccceeEEEEccchh-ccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH--HHHhcCCEEEE
Confidence 3457899999996522 222 112234455555554431 11 2222 89999999864
No 50
>PRK08317 hypothetical protein; Provisional
Probab=98.61 E-value=2.9e-07 Score=73.88 Aligned_cols=70 Identities=26% Similarity=0.252 Sum_probs=55.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~ 108 (179)
++++.+|||+|||+|.|+..+++..++ .+.|+|+|+++.. ...++.++.+|+.+.+
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~------------~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-- 82 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGP------------EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-- 82 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCC------------CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC--
Confidence 367889999999999999999998743 5799999999831 1357888999988754
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.+.+||+|+++..
T Consensus 83 ------~~~~~~D~v~~~~~ 96 (241)
T PRK08317 83 ------FPDGSFDAVRSDRV 96 (241)
T ss_pred ------CCCCCceEEEEech
Confidence 34568999998764
No 51
>PRK05785 hypothetical protein; Provisional
Probab=98.60 E-value=1.2e-07 Score=78.06 Aligned_cols=67 Identities=24% Similarity=0.270 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC--CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA--PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~--~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.++.+|||||||||..+..++++.+ ..|+|+|+++ |- ......++++|+.+.+ ++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~--------------~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp--------~~ 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK--------------YYVVALDYAENMLKMNLVADDKVVGSFEALP--------FR 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC--------------CEEEEECCCHHHHHHHHhccceEEechhhCC--------CC
Confidence 4578999999999999999988752 6899999998 31 1112346788888764 56
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
+++||+|++..+
T Consensus 108 d~sfD~v~~~~~ 119 (226)
T PRK05785 108 DKSFDVVMSSFA 119 (226)
T ss_pred CCCEEEEEecCh
Confidence 789999999764
No 52
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.58 E-value=2e-07 Score=72.86 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|..+..++++ . .+|+|+|+++. ....+++++++|+.+.+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~--------------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~---- 72 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-A--------------ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD---- 72 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-C--------------CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC----
Confidence 56789999999999999999987 2 68999999983 12357999999998864
Q ss_pred HHhhcCCCCccEEeeCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~ 130 (179)
+++..+|.|++|.+.+
T Consensus 73 ----~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 73 ----LPKLQPYKVVGNLPYN 88 (169)
T ss_pred ----ccccCCCEEEECCCcc
Confidence 2334689999997654
No 53
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.56 E-value=2.2e-07 Score=80.38 Aligned_cols=81 Identities=17% Similarity=0.076 Sum_probs=57.8
Q ss_pred hhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------C
Q 030299 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (179)
Q Consensus 24 Raa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~ 91 (179)
|+.+|...+......+ +|.+|||||||+|.++..++...+ ..|+|+|+++.. .
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~--------------~~V~GiD~S~~~l~q~~a~~~~~~~ 170 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGA--------------KLVVGIDPSQLFLCQFEAVRKLLGN 170 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCC--------------CEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 3444444443344333 578999999999999999988732 479999999831 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++.++.+|+.+.+ + ...||+|+|-+.
T Consensus 171 ~~~i~~~~~d~e~lp--------~-~~~FD~V~s~~v 198 (322)
T PRK15068 171 DQRAHLLPLGIEQLP--------A-LKAFDTVFSMGV 198 (322)
T ss_pred CCCeEEEeCCHHHCC--------C-cCCcCEEEECCh
Confidence 247889999988754 2 468999999764
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.53 E-value=2.2e-07 Score=75.01 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=54.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccc-cchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDI-TNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi-~~~~~ 107 (179)
+++.+|||||||+|.++..++++.+ ...|+|+|+++- ...+++.++++|+ ...+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-------------~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~- 104 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-------------DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL- 104 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-------------CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-
Confidence 3577999999999999999998865 478999999982 1246899999998 4322
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+++..||.|++..+
T Consensus 105 -----~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 105 -----DMFPDGSLDRIYLNFP 120 (202)
T ss_pred -----HHcCccccceEEEECC
Confidence 1244568999998754
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.52 E-value=1.2e-07 Score=67.75 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=46.8
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHhh
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
|||||||+|..+..+.+..+. ++...++|+|+++.. ....++++++|+.+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA----------GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH-------
T ss_pred CEEeecCCcHHHHHHHHHhhh----------cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc-------
Confidence 799999999999999988621 013799999999831 12488999999988642
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
.+++||+|++.+.
T Consensus 64 -~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 64 -SDGKFDLVVCSGL 76 (101)
T ss_dssp -HSSSEEEEEE-TT
T ss_pred -cCCCeeEEEEcCC
Confidence 3468999999554
No 56
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.51 E-value=3.5e-07 Score=73.51 Aligned_cols=64 Identities=20% Similarity=0.234 Sum_probs=50.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|..+.+++++ ...|+|+|+++. ....+++++.+|+.+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---------------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~--- 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---------------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT--- 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---
Confidence 5579999999999999999986 268999999983 12456778888887643
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
+ +.+||+|++.+.
T Consensus 92 -----~-~~~fD~I~~~~~ 104 (197)
T PRK11207 92 -----F-DGEYDFILSTVV 104 (197)
T ss_pred -----c-CCCcCEEEEecc
Confidence 2 357999999765
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.49 E-value=5.1e-07 Score=72.94 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=54.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~ 107 (179)
+++.+|||+|||+|..+..+++..+. .++|+|+|+++.. .+. +++++.+|..+...
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~------------~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIER------------RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 67899999999999999999998753 4799999999831 122 48889999876421
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
...+||+|+++++
T Consensus 139 --------~~~~fD~Ii~~~~ 151 (205)
T PRK13944 139 --------KHAPFDAIIVTAA 151 (205)
T ss_pred --------cCCCccEEEEccC
Confidence 2358999999876
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.48 E-value=3.6e-07 Score=80.82 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=52.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--CCeeEEeccccchhhHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~--~~v~~i~gDi~~~~~~~~ 110 (179)
+++|.+|||||||+|+++.+++++.+ .+|+|+|+++.. .. .++++..+|..+.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g--------------~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l----- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYG--------------VSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL----- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCC--------------CEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----
Confidence 37899999999999999999998753 689999999842 11 2466666766542
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
+++||.|++.+.....|..
T Consensus 226 ------~~~fD~Ivs~~~~ehvg~~ 244 (383)
T PRK11705 226 ------NGQFDRIVSVGMFEHVGPK 244 (383)
T ss_pred ------CCCCCEEEEeCchhhCChH
Confidence 2579999987654444433
No 59
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.48 E-value=2e-07 Score=74.34 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=54.5
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHH
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l 111 (179)
...++++.+|||+|||+|.++..+++.. ...++|+|+++.. ...+++++++|+.+...
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~--------------~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~---- 69 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEK--------------QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLE---- 69 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhcc--------------CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhccc----
Confidence 3445788899999999999999887764 2578999999731 13578889999875210
Q ss_pred HhhcCCCCccEEeeCCCC
Q 030299 112 IRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~ 129 (179)
.+++++||+|++..+.
T Consensus 70 --~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 70 --AFPDKSFDYVILSQTL 85 (194)
T ss_pred --ccCCCCcCEEEEhhHh
Confidence 1345689999997653
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.47 E-value=8.9e-07 Score=79.66 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~ 108 (179)
++++.+|||+|||+|..+..++...+ ..|+|+|+++.. . ..+++++++|+.+.+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--------------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--------------VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--------------CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--
Confidence 47788999999999999999988753 689999999731 1 236889999998754
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++++||+|+|...
T Consensus 328 ------~~~~~fD~I~s~~~ 341 (475)
T PLN02336 328 ------YPDNSFDVIYSRDT 341 (475)
T ss_pred ------CCCCCEEEEEECCc
Confidence 35568999999754
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.47 E-value=4.2e-07 Score=75.49 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=52.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++++ ...|+|+|+++.. . .++++++++|+.+...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~ 107 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---------------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ 107 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---------------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh
Confidence 45679999999999999999886 2689999999821 1 2468899999987532
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.||+|++...
T Consensus 108 -------~~~~~fD~V~~~~v 121 (255)
T PRK11036 108 -------HLETPVDLILFHAV 121 (255)
T ss_pred -------hcCCCCCEEEehhH
Confidence 23468999998754
No 62
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.46 E-value=4e-07 Score=76.48 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+..+|||+|||+|.++..+++..+.. ....|+|+|+++. +..+++.+..+|+.+.+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~----------~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp------- 146 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI----------TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP------- 146 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc----------cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-------
Confidence 356789999999999999998876420 1247999999983 23568889999998864
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
++++.||+|++..+|
T Consensus 147 -~~~~sfD~I~~~~~~ 161 (272)
T PRK11088 147 -FADQSLDAIIRIYAP 161 (272)
T ss_pred -CcCCceeEEEEecCC
Confidence 456789999986653
No 63
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.46 E-value=1e-06 Score=63.85 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=52.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~~ 109 (179)
|.+|||+|||+|.++..+++.. ...++|+|++|.. .. ..++++++|+++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--- 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--------------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--- 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--------------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH---
T ss_pred CCEEEEcCcchHHHHHHHHHHC--------------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch---
Confidence 5689999999999999999875 2799999999941 12 46899999998864
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+...+||+|++|.+..
T Consensus 64 ---~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 64 ---EPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp ---HTCTTT-EEEEEE--STT
T ss_pred ---hhccCceeEEEEECCCCc
Confidence 224567999999998754
No 64
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.45 E-value=4.5e-07 Score=62.45 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=48.0
Q ss_pred EEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CCCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------APIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 46 lDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
||+|||+|..+..++++ + ...|+++|+++. ....++.++++|+++.+ +++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLP--------FPD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSS--------S-T
T ss_pred CEecCcCCHHHHHHHhc-c-------------CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCc--------ccc
Confidence 89999999999999998 4 489999999983 12356779999999986 567
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
+.||+|++....
T Consensus 59 ~sfD~v~~~~~~ 70 (95)
T PF08241_consen 59 NSFDVVFSNSVL 70 (95)
T ss_dssp T-EEEEEEESHG
T ss_pred ccccccccccce
Confidence 899999997653
No 65
>PRK14967 putative methyltransferase; Provisional
Probab=98.43 E-value=5.7e-07 Score=73.36 Aligned_cols=80 Identities=21% Similarity=0.215 Sum_probs=58.1
Q ss_pred hhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CC--CC
Q 030299 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI--EG 94 (179)
Q Consensus 25 aa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~--~~ 94 (179)
....|.+...... +.++.+|||+|||+|.++..++.. + ..+|+++|+++.. .. .+
T Consensus 21 ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~ 85 (223)
T PRK14967 21 DTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G-------------AGSVTAVDISRRAVRSARLNALLAGVD 85 (223)
T ss_pred cHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHhCCe
Confidence 4455666555544 367889999999999999998875 3 2589999999831 01 24
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.+|+.+. +++.+||+|++|.+
T Consensus 86 ~~~~~~d~~~~---------~~~~~fD~Vi~npP 110 (223)
T PRK14967 86 VDVRRGDWARA---------VEFRPFDVVVSNPP 110 (223)
T ss_pred eEEEECchhhh---------ccCCCeeEEEECCC
Confidence 67778888663 23468999999974
No 66
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=5.1e-07 Score=79.00 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++||++|||+||+|||.|..+.+.+-. ....+.|+|.|..+.. +.++......|+...+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~---------~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~ 223 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHK---------DPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPN 223 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhc---------CCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccc
Confidence 378999999999999999988887642 0125799999999841 33455555666665543
Q ss_pred HH--HHHhhcCCCCccEEeeCCCCCCCCC-----------Cccc-----HHHHHHHHHHHHHH
Q 030299 108 AE--VVIRHFDGCKADLVVCDGAPDVTGL-----------HDMD-----EFVQSQLILAVSIQ 152 (179)
Q Consensus 108 ~~--~l~~~~~~~~~D~VlsD~~~~~~g~-----------~~~d-----~~~q~~L~~~AL~~ 152 (179)
.. .-. ......||-||+|..|+..|. |+.+ |.+|++|+..+|..
T Consensus 224 ~~~~~~~-~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~l 285 (375)
T KOG2198|consen 224 IYLKDGN-DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRL 285 (375)
T ss_pred cccccCc-hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHH
Confidence 21 000 012247999999999988765 2222 46788888888774
No 67
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.42 E-value=1e-06 Score=76.99 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=56.2
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhh
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNART 107 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~ 107 (179)
..+-+++.+|||||||+|.++..+++..+ ...|+++|+++.. +..+++++.+|+.+.+
T Consensus 108 ~~l~~~~~~VLDLGcGtG~~~l~La~~~~-------------~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp- 173 (340)
T PLN02490 108 ADLSDRNLKVVDVGGGTGFTTLGIVKHVD-------------AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP- 173 (340)
T ss_pred cccCCCCCEEEEEecCCcHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-
Confidence 33335788999999999999999988765 4689999999731 2457889999998754
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++.||+|++...
T Consensus 174 -------~~~~sFDvVIs~~~ 187 (340)
T PLN02490 174 -------FPTDYADRYVSAGS 187 (340)
T ss_pred -------CCCCceeEEEEcCh
Confidence 34568999999654
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.40 E-value=8.4e-07 Score=72.53 Aligned_cols=69 Identities=28% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..++...+ ...|+|+|+++.. ...++.++.+|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-------------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-------------DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----
Confidence 456899999999999999998865 4799999999831 244688999998763
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++..+||+|++|.+...
T Consensus 150 -----~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 150 -----LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred -----CcCCceeEEEECCCCCc
Confidence 23468999999876544
No 69
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.39 E-value=1.2e-06 Score=69.32 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++++.+ ..+|+++|+++.. ...+++++.+|+...
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-------------~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~--- 93 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-------------SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE--- 93 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---
Confidence 5788999999999999999998764 5799999999831 135688888886421
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
++ ..||+|++++.
T Consensus 94 ------~~-~~~D~v~~~~~ 106 (187)
T PRK08287 94 ------LP-GKADAIFIGGS 106 (187)
T ss_pred ------cC-cCCCEEEECCC
Confidence 22 47999999764
No 70
>PRK06202 hypothetical protein; Provisional
Probab=98.39 E-value=1e-06 Score=71.99 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++.+|||||||+|.++..+++..... +....|+|+|+++.. ..+++.+..+|..+.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~---------g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRD---------GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhC---------CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccccc-----
Confidence 467799999999999999988754210 113589999999831 1346777777665543
Q ss_pred HhhcCCCCccEEeeCCC
Q 030299 112 IRHFDGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~ 128 (179)
..++.||+|++...
T Consensus 125 ---~~~~~fD~V~~~~~ 138 (232)
T PRK06202 125 ---AEGERFDVVTSNHF 138 (232)
T ss_pred ---ccCCCccEEEECCe
Confidence 13468999999765
No 71
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.38 E-value=1.8e-06 Score=74.10 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEe
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQ 99 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~ 99 (179)
|.|+.+.+.+ ++|..++|++||.||.|..+++..++ .++|+|+|.+|.. ...++++++
T Consensus 8 l~Evl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~------------~g~VigiD~D~~al~~ak~~L~~~~ri~~i~ 74 (296)
T PRK00050 8 LDEVVDALAI-KPDGIYVDGTFGGGGHSRAILERLGP------------KGRLIAIDRDPDAIAAAKDRLKPFGRFTLVH 74 (296)
T ss_pred HHHHHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCC------------CCEEEEEcCCHHHHHHHHHhhccCCcEEEEe
Confidence 3444444543 67889999999999999999999853 5899999999931 124799999
Q ss_pred ccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 100 GDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+|+.+.... ... .-.+||.|+.|...+.
T Consensus 75 ~~f~~l~~~---l~~-~~~~vDgIl~DLGvSs 102 (296)
T PRK00050 75 GNFSNLKEV---LAE-GLGKVDGILLDLGVSS 102 (296)
T ss_pred CCHHHHHHH---HHc-CCCccCEEEECCCccc
Confidence 999886421 111 1137999999997655
No 72
>PHA03412 putative methyltransferase; Provisional
Probab=98.36 E-value=4.6e-07 Score=75.50 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=78.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.+.+|||+|||+|.++..+++++..+ +...|+|+|+++.. ..+++.++++|+.+..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~-------- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA----------KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE-------- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC----------CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc--------
Confidence 36799999999999999998875310 14689999999942 3457889999997643
Q ss_pred cCCCCccEEeeCCCCCCCCCCcc-----cHHHHHHHHHHHHHHH----H-----HHHHHHHHHHhhceEEEeeeeee
Q 030299 115 FDGCKADLVVCDGAPDVTGLHDM-----DEFVQSQLILAVSIQF----F-----IYELVFCLRQLLQYVILDGSYFC 177 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~~~g~~~~-----d~~~q~~L~~~AL~~~----~-----~~~~~~~~~~~f~~v~~~~~~~~ 177 (179)
+ ..+||+|+++.+.......+. +......++..|++.. | +...=|..++.|++++-.++=-|
T Consensus 111 ~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~~~~~~~~~~~ 186 (241)
T PHA03412 111 F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFRQDESTTSSKC 186 (241)
T ss_pred c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCccceeeccCcccHHH
Confidence 2 348999999987654333221 2233455666666522 1 13344777888877776554433
No 73
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.35 E-value=1.3e-06 Score=74.32 Aligned_cols=67 Identities=30% Similarity=0.446 Sum_probs=52.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
++.+|||+|||+|.++..++.+.+ ..+|+|+|+++.. .+ .++.++++|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~-------------~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--- 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP-------------EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--- 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---
Confidence 457999999999999999998865 5799999999831 12 3588999998753
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++.+||+|++|.+-
T Consensus 185 ------~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 185 ------LPGRKYDLIVSNPPY 199 (284)
T ss_pred ------cCCCCccEEEECCCC
Confidence 234579999999653
No 74
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.35 E-value=1.6e-06 Score=70.01 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C---CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~---~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..++...+. ..+|+++|+++.. . ..++.++.+|+.+.+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~- 116 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGK------------TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP- 116 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCC------------CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-
Confidence 46789999999999999999998742 4799999998731 1 246888899998754
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
+....||+|++..
T Consensus 117 -------~~~~~~D~I~~~~ 129 (239)
T PRK00216 117 -------FPDNSFDAVTIAF 129 (239)
T ss_pred -------CCCCCccEEEEec
Confidence 2345799998754
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.35 E-value=1.2e-06 Score=70.18 Aligned_cols=71 Identities=8% Similarity=0.102 Sum_probs=55.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
++..+|||||||+|.++..++++.+ ...|+|+|+++. ..+.|+.++++|+.+...
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-------------~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~- 80 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-------------DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD- 80 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH-
Confidence 4567999999999999999998875 579999999983 125689999999987431
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+++..+|.|+++.+
T Consensus 81 ----~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 81 ----KFFPDGSLSKVFLNFP 96 (194)
T ss_pred ----hhCCCCceeEEEEECC
Confidence 1234458999998764
No 76
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.35 E-value=1.4e-06 Score=69.84 Aligned_cols=70 Identities=20% Similarity=0.101 Sum_probs=48.8
Q ss_pred HhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCC--CeeEEeccccc
Q 030299 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIE--GVIQVQGDITN 104 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~--~v~~i~gDi~~ 104 (179)
.....+ +.+|||+|||+|.++.+++++ ...|+|+|+++.. ... .+....+|+.+
T Consensus 25 ~~~~~~-~~~vLDiGcG~G~~a~~la~~---------------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~ 88 (195)
T TIGR00477 25 AVKTVA-PCKTLDLGCGQGRNSLYLSLA---------------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINA 88 (195)
T ss_pred HhccCC-CCcEEEeCCCCCHHHHHHHHC---------------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchh
Confidence 334433 569999999999999999985 3689999999831 012 25566667654
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.+ ++ .+||+|++.+..
T Consensus 89 ~~--------~~-~~fD~I~~~~~~ 104 (195)
T TIGR00477 89 AA--------LN-EDYDFIFSTVVF 104 (195)
T ss_pred cc--------cc-CCCCEEEEeccc
Confidence 32 23 479999987653
No 77
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.34 E-value=1.6e-06 Score=75.24 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..+++..+. .+.|+++|+++. ....++.++++|..+...
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~------------~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGE------------KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP 145 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence 367899999999999999999998752 468999999982 134678899999765321
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+||+|+++.
T Consensus 146 --------~~~~fD~Ii~~~ 157 (322)
T PRK13943 146 --------EFAPYDVIFVTV 157 (322)
T ss_pred --------ccCCccEEEECC
Confidence 124688888764
No 78
>PHA03411 putative methyltransferase; Provisional
Probab=98.33 E-value=1.4e-06 Score=74.03 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=55.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++.+|||+|||+|.++..++.+.+ ...|+|+|+++. +..+++.++++|+.+..
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~-------------~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-------- 122 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCK-------------PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-------- 122 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--------
Confidence 456999999999999999888753 368999999993 12467889999998742
Q ss_pred cCCCCccEEeeCCCCCCC
Q 030299 115 FDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~~~ 132 (179)
.+.+||+|++|.+....
T Consensus 123 -~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 123 -SNEKFDVVISNPPFGKI 139 (279)
T ss_pred -ccCCCcEEEEcCCcccc
Confidence 23579999999876543
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.33 E-value=2.2e-06 Score=75.90 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=69.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C---CCCeeEEeccccchhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P---IEGVIQVQGDITNART 107 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~---~~~v~~i~gDi~~~~~ 107 (179)
+.+|||||||+|..+..++++.+ ..+|+++|++++. . ..+++++.+|+.+.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P-------------~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-- 293 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP-------------QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-- 293 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--
Confidence 45899999999999999999865 5899999999852 0 12567888887653
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------HH----HHHHHHHHHhhceEEEee
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------FI----YELVFCLRQLLQYVILDG 173 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~~----~~~~~~~~~~f~~v~~~~ 173 (179)
+.+.+||+|+|+.++.. +....++ .-.++...+-+.. ++ ....-.|+++|..+++.+
T Consensus 294 -------~~~~~fDlIlsNPPfh~-~~~~~~~-ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va 361 (378)
T PRK15001 294 -------VEPFRFNAVLCNPPFHQ-QHALTDN-VAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIA 361 (378)
T ss_pred -------CCCCCEEEEEECcCccc-CccCCHH-HHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEc
Confidence 23457999999876543 3222222 2223333332221 11 122346788888887653
No 80
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.31 E-value=2.1e-06 Score=70.49 Aligned_cols=69 Identities=19% Similarity=0.121 Sum_probs=52.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C---CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~---~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|.++..++++... +...|+|+|+++.. . ..+++++++|+.+.+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~-----------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~ 119 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQ-----------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE 119 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC
Confidence 467889999999999999999987631 25899999999721 1 236889999998754
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ ..+|+|++..+
T Consensus 120 --------~--~~~d~v~~~~~ 131 (239)
T TIGR00740 120 --------I--KNASMVILNFT 131 (239)
T ss_pred --------C--CCCCEEeeecc
Confidence 2 35788887654
No 81
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.31 E-value=1.5e-06 Score=74.70 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..++.+ ...|+|+|+++.. .+.+++++++|+.+...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~---------------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~-- 235 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP---------------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT-- 235 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc---------------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH--
Confidence 4689999999999999999884 3689999999831 24579999999976421
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
. ....||+|++|.
T Consensus 236 ----~-~~~~~D~Vv~dP 248 (315)
T PRK03522 236 ----A-QGEVPDLVLVNP 248 (315)
T ss_pred ----h-cCCCCeEEEECC
Confidence 1 124699999994
No 82
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.31 E-value=1.2e-06 Score=76.03 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||+|.+++.+++. ...|+|+|+++.. + ..+++++++|+.+..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~---------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~- 193 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM---------------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA- 193 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc---------------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-
Confidence 35779999999999999998863 3689999999831 1 136889999987653
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
+.++.||+|++-.
T Consensus 194 -------~~~~~FD~Vi~~~ 206 (322)
T PLN02396 194 -------DEGRKFDAVLSLE 206 (322)
T ss_pred -------hccCCCCEEEEhh
Confidence 2346899999854
No 83
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.31 E-value=9e-07 Score=72.34 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=54.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
++||++|||||||+|..|-.++..++. .+.|+++|+.+- ..+.||.++.+|...-..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~------------~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGP------------VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHST------------TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCc------------cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 589999999999999999999999874 578999999983 135699999999876432
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...+||.|++.++.
T Consensus 138 --------~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 138 --------EEAPFDRIIVTAAV 151 (209)
T ss_dssp --------GG-SEEEEEESSBB
T ss_pred --------cCCCcCEEEEeecc
Confidence 23589999998764
No 84
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.30 E-value=1.9e-06 Score=69.68 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=48.4
Q ss_pred HhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEecccc
Q 030299 35 EFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDIT 103 (179)
Q Consensus 35 ~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~ 103 (179)
-..++++| ++||||||.|.-+.+|+++ +..|+|+|.++.. .+ .++....|+.
T Consensus 25 a~~~~~~g-~~LDlgcG~GRNalyLA~~---------------G~~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~ 87 (192)
T PF03848_consen 25 AVPLLKPG-KALDLGCGEGRNALYLASQ---------------GFDVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLN 87 (192)
T ss_dssp HCTTS-SS-EEEEES-TTSHHHHHHHHT---------------T-EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGC
T ss_pred HHhhcCCC-cEEEcCCCCcHHHHHHHHC---------------CCeEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecch
Confidence 34555554 9999999999999999997 4789999999941 12 3777788988
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.. ++ ..+|+|+|...
T Consensus 88 ~~~--------~~-~~yD~I~st~v 103 (192)
T PF03848_consen 88 DFD--------FP-EEYDFIVSTVV 103 (192)
T ss_dssp CBS---------T-TTEEEEEEESS
T ss_pred hcc--------cc-CCcCEEEEEEE
Confidence 764 33 57999998654
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.30 E-value=2.7e-06 Score=68.17 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||+|||+|.++..++...++ .++|+++|+++.. . ..++.++.+|+.+..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~------------~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGE------------TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCC------------CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 368899999999999999999887653 5799999999831 1 357888888886531
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
... ...||.|++.+
T Consensus 106 ------~~~-~~~~D~V~~~~ 119 (198)
T PRK00377 106 ------FTI-NEKFDRIFIGG 119 (198)
T ss_pred ------hhc-CCCCCEEEECC
Confidence 112 24799999965
No 86
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.29 E-value=4.5e-06 Score=72.17 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=55.5
Q ss_pred hhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------C
Q 030299 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------P 91 (179)
Q Consensus 24 Raa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~ 91 (179)
|+-.|...+...... .+|.+|||+|||+|.++..++... ...|+|+|+++.. .
T Consensus 105 ~s~~~~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g--------------~~~v~GiDpS~~ml~q~~~~~~~~~~ 169 (314)
T TIGR00452 105 RSDIKWDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHG--------------AKSLVGIDPTVLFLCQFEAVRKLLDN 169 (314)
T ss_pred HHHHHHHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcC--------------CCEEEEEcCCHHHHHHHHHHHHHhcc
Confidence 344444444444433 457899999999999998887652 2479999999821 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++.+..+|+.+.+. ...||+|+|.+.
T Consensus 170 ~~~v~~~~~~ie~lp~---------~~~FD~V~s~gv 197 (314)
T TIGR00452 170 DKRAILEPLGIEQLHE---------LYAFDTVFSMGV 197 (314)
T ss_pred CCCeEEEECCHHHCCC---------CCCcCEEEEcch
Confidence 2356777788776531 247999999874
No 87
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.28 E-value=1e-06 Score=66.63 Aligned_cols=67 Identities=22% Similarity=0.406 Sum_probs=46.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
..++.+|||+|||+|.++..+++. + ..|+|+|+++.. ...++....-+..+.. .++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--------------~~~~g~D~~~~~~~~~~~~~~~~~~~~~~--------~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--------------FEVTGVDISPQMIEKRNVVFDNFDAQDPP--------FPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--------------SEEEEEESSHHHHHHTTSEEEEEECHTHH--------CHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--------------CEEEEEECCHHHHhhhhhhhhhhhhhhhh--------ccc
Confidence 578899999999999999999664 2 599999999832 1123333333333322 235
Q ss_pred CCccEEeeCCC
Q 030299 118 CKADLVVCDGA 128 (179)
Q Consensus 118 ~~~D~VlsD~~ 128 (179)
+.||+|++...
T Consensus 77 ~~fD~i~~~~~ 87 (161)
T PF13489_consen 77 GSFDLIICNDV 87 (161)
T ss_dssp SSEEEEEEESS
T ss_pred cchhhHhhHHH
Confidence 68999999764
No 88
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.27 E-value=4.7e-06 Score=69.09 Aligned_cols=68 Identities=26% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~----------~-~~~v~~i~gDi~~~~ 106 (179)
+.++.+|||||||+|..+..+++.... +..+|+|+|+++. . . ..+++++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-----------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-----------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 468889999999999999998886421 2589999999983 1 1 236889999987753
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
...+|+|++..
T Consensus 123 ----------~~~~D~vv~~~ 133 (247)
T PRK15451 123 ----------IENASMVVLNF 133 (247)
T ss_pred ----------CCCCCEEehhh
Confidence 13478887754
No 89
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=5.7e-06 Score=66.71 Aligned_cols=79 Identities=27% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.|.+|+|||||+|.++.-++-. + ..+|+|||+.|.. ..-+|.|+.+|+++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G-------------a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G-------------ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C-------------CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----
Confidence 5778999999999999887765 3 3799999999942 1236999999999953
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCccc-HHHHHHH
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMD-EFVQSQL 145 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d-~~~q~~L 145 (179)
.++|.|+-|.++-+.... .| .+++..|
T Consensus 107 -------~~~dtvimNPPFG~~~rh-aDr~Fl~~Al 134 (198)
T COG2263 107 -------GKFDTVIMNPPFGSQRRH-ADRPFLLKAL 134 (198)
T ss_pred -------CccceEEECCCCcccccc-CCHHHHHHHH
Confidence 579999999876544222 33 4544433
No 90
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.26 E-value=3.6e-06 Score=67.93 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..+++.. ++|+++|+++.. .+.+++++.+|..+..
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---------------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 139 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---------------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-- 139 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---------------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--
Confidence 678999999999999999887763 479999999731 2457889999986531
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++||+|+++.++
T Consensus 140 ------~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 140 ------PAYAPFDRILVTAAA 154 (212)
T ss_pred ------CcCCCcCEEEEccCc
Confidence 123589999998753
No 91
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.26 E-value=2.8e-06 Score=71.99 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=51.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~~~ 110 (179)
.+|||+|||+|.++..++...+ ...|+|+|+++.. ... ++.++++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-------------~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-------------NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-----
Confidence 6899999999999999998865 4799999999831 233 388999998763
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++|.+
T Consensus 178 ----~~~~~fDlIvsNPP 191 (284)
T TIGR00536 178 ----LAGQKIDIIVSNPP 191 (284)
T ss_pred ----CcCCCccEEEECCC
Confidence 23347999999854
No 92
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.25 E-value=1.1e-06 Score=73.19 Aligned_cols=62 Identities=26% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCee--EEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVI--QVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~--~i~gDi~~~~~~~~ 110 (179)
+|.+|||+|||-|..|+.+++. +..|+|+|+++.. .-.++. +.+..+.+..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---------------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~---- 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---------------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA---- 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---------------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHH----
Confidence 7889999999999999999886 3789999999841 123443 5566665543
Q ss_pred HHhhcCCCCccEEee
Q 030299 111 VIRHFDGCKADLVVC 125 (179)
Q Consensus 111 l~~~~~~~~~D~Vls 125 (179)
..+++||+|+|
T Consensus 120 ----~~~~~FDvV~c 130 (243)
T COG2227 120 ----SAGGQFDVVTC 130 (243)
T ss_pred ----hcCCCccEEEE
Confidence 12379999998
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.24 E-value=3.4e-06 Score=70.10 Aligned_cols=69 Identities=26% Similarity=0.274 Sum_probs=54.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++...+ ...|+|+|+++.. ...++.++.+|+.+..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~-------------~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-- 171 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERP-------------DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-- 171 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--
Confidence 4567999999999999999998875 5799999999831 1347889999986642
Q ss_pred HHHHhhcCCCCccEEeeCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
...+||+|++|.+..
T Consensus 172 -------~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 172 -------PGGRFDLIVSNPPYI 186 (275)
T ss_pred -------CCCceeEEEECCCcC
Confidence 235899999986543
No 94
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.23 E-value=3.1e-06 Score=71.68 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=49.8
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhh
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~ 107 (179)
.++++ +|||+|||+|..+.+++++ ...|+|+|+++.. ...++++..+|+.+..
T Consensus 118 ~~~~~-~vLDlGcG~G~~~~~la~~---------------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~- 180 (287)
T PRK12335 118 TVKPG-KALDLGCGQGRNSLYLALL---------------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS- 180 (287)
T ss_pred ccCCC-CEEEeCCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-
Confidence 34554 9999999999999999885 3689999999831 1126777788887643
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ ++.||+|++.+.
T Consensus 181 -------~-~~~fD~I~~~~v 193 (287)
T PRK12335 181 -------I-QEEYDFILSTVV 193 (287)
T ss_pred -------c-cCCccEEEEcch
Confidence 2 357999999764
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.23 E-value=4e-06 Score=72.40 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=53.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
+++|.+|||+|||+|+++..++.. ...|+|+|+++.. ..+++.++++|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~---------------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM---------------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh---------------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-
Confidence 478999999999999998876553 3689999999831 2356778899998864
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+..||+|++|.+.
T Consensus 244 -------~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 244 -------LSSESVDAIATDPPY 258 (329)
T ss_pred -------cccCCCCEEEECCCC
Confidence 234689999999764
No 96
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.21 E-value=3.5e-06 Score=71.06 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C--CCCeeEEeccccchhhHHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P--IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~--~~~v~~i~gDi~~~~~~~~l 111 (179)
.++++|||+|||+|..|..++++. .+|+|+|+++.. . .++++++++|+.+.+.
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~---- 101 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---------------AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDL---- 101 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCH----
Confidence 678899999999999999999883 489999999831 1 2589999999998652
Q ss_pred HhhcCCCCccEEeeCCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~ 131 (179)
++..++.|+++.+...
T Consensus 102 ----~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 ----SELQPLKVVANLPYNI 117 (272)
T ss_pred ----HHcCcceEEEeCCccc
Confidence 1111589999876544
No 97
>PRK06922 hypothetical protein; Provisional
Probab=98.20 E-value=4.2e-06 Score=78.41 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=52.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C----CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A----PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~----~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.+|||+|||+|.++..++++.+ ...|+|+|+++. + ...++.++++|+.+.+.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-------------~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~--- 481 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-------------DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSS--- 481 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCcc---
Confidence 578999999999999999988765 589999999983 1 11357778899877431
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
.+++..||+|++..
T Consensus 482 ---~fedeSFDvVVsn~ 495 (677)
T PRK06922 482 ---SFEKESVDTIVYSS 495 (677)
T ss_pred ---ccCCCCEEEEEEch
Confidence 14557899999864
No 98
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.19 E-value=4.6e-06 Score=74.64 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~ 108 (179)
+.++.+|||||||+|..+..++.+.+ ...|+|+|+++.. . -.+++++++|+++...
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p-------------~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP-------------DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDM- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccc-
Confidence 35667999999999999999887754 5799999999831 1 1268899999976421
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
....+||+|+||.+-
T Consensus 315 ------~~~~~FDLIVSNPPY 329 (423)
T PRK14966 315 ------PSEGKWDIIVSNPPY 329 (423)
T ss_pred ------ccCCCccEEEECCCC
Confidence 013479999999753
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.19 E-value=3.8e-06 Score=72.23 Aligned_cols=64 Identities=25% Similarity=0.443 Sum_probs=51.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~~~ 110 (179)
.+|||+|||+|.++..++.+.+ ...|+|+|+++.. .+ .+++++++|+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-------------~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----- 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-------------DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----- 196 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-----
Confidence 6899999999999999998865 5799999999831 12 3588999998753
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|++|.+
T Consensus 197 ----l~~~~fDlIvsNPP 210 (307)
T PRK11805 197 ----LPGRRYDLIVSNPP 210 (307)
T ss_pred ----CCCCCccEEEECCC
Confidence 23457999999854
No 100
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.19 E-value=6.3e-06 Score=68.94 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=54.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||+|||+|..|..++++ + .+|+|+|+++. ....+++++.+|+.+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~-~--------------~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKR-A--------------KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD---- 88 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHh-C--------------CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC----
Confidence 57899999999999999999987 2 58999999972 12457999999998754
Q ss_pred HHhhcCCCCccEEeeCCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+ ..+|.|+++.+...
T Consensus 89 ----~--~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 ----L--PEFNKVVSNLPYQI 103 (258)
T ss_pred ----c--hhceEEEEcCCccc
Confidence 2 24799999987654
No 101
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.18 E-value=3.2e-06 Score=70.64 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.+|||||||+|.++..++...+ ...|+|+|+++.. ...+++++++|+.+... .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-------------~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~-----~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-------------GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALP-----T 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcc-----h
Confidence 45899999999999999998765 4689999999842 12356789999876421 1
Q ss_pred hcCCCCccEEeeCCCCCCCC
Q 030299 114 HFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g 133 (179)
.+ ..+||+|++|.+...++
T Consensus 149 ~~-~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 149 AL-RGRVDILAANAPYVPTD 167 (251)
T ss_pred hc-CCCEeEEEECCCCCCch
Confidence 12 24799999998765444
No 102
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.17 E-value=5e-06 Score=65.37 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=49.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||+|||+|.++..++++. .+|+++|+++.. ...+++++.+|+.+..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~---------------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--- 79 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG---------------KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--- 79 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC---------------CEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---
Confidence 345789999999999999998762 389999999831 1125778889987632
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
..+||+|+++.+.
T Consensus 80 -------~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 80 -------RGKFDVILFNPPY 92 (179)
T ss_pred -------CCcccEEEECCCC
Confidence 2489999999753
No 103
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.17 E-value=4.2e-06 Score=66.80 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=52.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||+|||+|.++..+++..+. ...++++|+++.. ...++.++.+|+.+.+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~------------~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPD------------RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP---- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCC------------CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence 47889999999999999999988652 3689999998731 1246888899998754
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
++.++||+|++..
T Consensus 102 ----~~~~~~D~i~~~~ 114 (223)
T TIGR01934 102 ----FEDNSFDAVTIAF 114 (223)
T ss_pred ----CCCCcEEEEEEee
Confidence 2346799998754
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.16 E-value=7.6e-06 Score=68.59 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=61.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
.....+|||||||.|..+..+++|.+ ..+|+|||+++.. + -+.++++++|+.+..
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-------------~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-------------KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL 108 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-------------CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence 34478999999999999999999865 4899999999831 1 247889999998864
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
. ......||+|+|+.+....+..
T Consensus 109 ~------~~~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 109 K------ALVFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred h------cccccccCEEEeCCCCCCCccc
Confidence 2 2333469999999987777766
No 105
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.16 E-value=5.4e-06 Score=67.14 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=48.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++.+++.+ ...|+|+|+++.. .. .++.+..+|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~---------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR---------------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL-- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC--
Confidence 46889999999999999999875 2589999999831 11 3788889998764
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
+ .+||+|++-.
T Consensus 117 --------~-~~fD~ii~~~ 127 (219)
T TIGR02021 117 --------C-GEFDIVVCMD 127 (219)
T ss_pred --------C-CCcCEEEEhh
Confidence 2 5799998843
No 106
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.15 E-value=7.7e-06 Score=73.42 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..+++.. ..|+|+|+++.. ...+++++++|+.+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~- 359 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT- 359 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh-
Confidence 578899999999999999998863 589999999831 24579999999976321
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. .+.+..||+|++|.+
T Consensus 360 -~~--~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 360 -DQ--PWALGGFDKVLLDPP 376 (443)
T ss_pred -hh--hhhcCCCCEEEECcC
Confidence 00 022357999999864
No 107
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.14 E-value=8.1e-06 Score=65.15 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
+++.+|||+|||+|.++..++...+ .++|+|+|+++.. ...+++++.+|+.+.-
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-------------~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~-- 103 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-------------KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECL-- 103 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHH--
Confidence 6788999999999999999987644 5799999999831 2357888899986521
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
..+. ..+|.+..++
T Consensus 104 ----~~~~-~~~d~v~~~~ 117 (196)
T PRK07402 104 ----AQLA-PAPDRVCIEG 117 (196)
T ss_pred ----hhCC-CCCCEEEEEC
Confidence 1122 2467777764
No 108
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.14 E-value=1e-05 Score=71.95 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~ 106 (179)
.+|.+|||||||+|+++..++.. + ..+|+++|+++.. .+ .+++++++|+++..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-g-------------a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-G-------------CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-C-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 46889999999999999876643 2 4699999999831 23 36889999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+++.. .+++||+|++|.+.-.
T Consensus 285 --~~~~~--~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 285 --RTYRD--RGEKFDVIVMDPPKFV 305 (396)
T ss_pred --HHHHh--cCCCCCEEEECCCCCC
Confidence 11111 2457999999987533
No 109
>PRK04457 spermidine synthase; Provisional
Probab=98.11 E-value=1.5e-05 Score=67.08 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C-C--CCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A-P--IEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~-~--~~~v~~i~gDi~~~~~ 107 (179)
.++.+|||||||.|..+.+++...+ ..+|+++|++|. . + .++++++.+|..+.-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-------------~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~ 131 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-------------DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA 131 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-------------CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence 4568999999999999999998875 589999999983 1 1 2578899999876421
Q ss_pred HHHHHhhcCCCCccEEeeCC
Q 030299 108 AEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~ 127 (179)
.. ..+||+|++|.
T Consensus 132 ------~~-~~~yD~I~~D~ 144 (262)
T PRK04457 132 ------VH-RHSTDVILVDG 144 (262)
T ss_pred ------hC-CCCCCEEEEeC
Confidence 12 25799999996
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.10 E-value=6.8e-06 Score=75.21 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=51.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
++.+|||+|||+|..+..++.+.+ ..+|+|+|+++.. .+ .++.++++|+.+.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-------------~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--- 201 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-------------NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--- 201 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-------------CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---
Confidence 356899999999999999988875 5799999999831 12 3578889998652
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+++.+||+|+|+.+
T Consensus 202 ------~~~~~fDlIvsNPP 215 (506)
T PRK01544 202 ------IEKQKFDFIVSNPP 215 (506)
T ss_pred ------CcCCCccEEEECCC
Confidence 23457999999864
No 111
>PRK00811 spermidine synthase; Provisional
Probab=98.10 E-value=4.5e-05 Score=64.79 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=70.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------------CCCCeeEEecccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------------PIEGVIQVQGDIT 103 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------------~~~~v~~i~gDi~ 103 (179)
.++.+||+||||.|+.+..+++..+ ..+|++||+++.. ..++++++.+|..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-------------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-------------VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-------------CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 3567999999999999999987532 4689999999830 1357888899987
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhce
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQY 168 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~ 168 (179)
..- .. .+++||+|++|...+..-....-...-.+.+...|+- + .+..++--|++.|..
T Consensus 142 ~~l------~~-~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 142 KFV------AE-TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred HHH------hh-CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 632 11 3468999999986443211111011112334444431 0 123444567888988
Q ss_pred EEE
Q 030299 169 VIL 171 (179)
Q Consensus 169 v~~ 171 (179)
|..
T Consensus 215 v~~ 217 (283)
T PRK00811 215 VRP 217 (283)
T ss_pred EEE
Confidence 876
No 112
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=3.1e-05 Score=66.45 Aligned_cols=106 Identities=19% Similarity=0.232 Sum_probs=73.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||||||.|-....++++.| ...|+-+|++.+. .++|.++...|+.+.-
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p-------------~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v---- 221 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP-------------QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV---- 221 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCC-------------CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc----
Confidence 44999999999999999999875 6899999999863 1345556788888752
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHHH-------HH-H---HHHHHHHHhhceEEEe
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQF-------FI-Y---ELVFCLRQLLQYVILD 172 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~~-------~~-~---~~~~~~~~~f~~v~~~ 172 (179)
.+ +||.|+|+.++. .|.. ..+..--++...|-.+. ++ + .---.|.++|..|++.
T Consensus 222 -----~~-kfd~IisNPPfh-~G~~-v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 222 -----EG-KFDLIISNPPFH-AGKA-VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVL 286 (300)
T ss_pred -----cc-cccEEEeCCCcc-CCcc-hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEE
Confidence 33 899999997764 3332 23333445666665543 11 1 1224689999998854
No 113
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.09 E-value=1.3e-05 Score=70.05 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=48.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
..+|||||||+|.++..++++.+ ..+|+++|++++. .-...+++.+|+.+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p-------------~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP-------------KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc------
Confidence 45899999999999999998865 4689999999842 011235667776542
Q ss_pred HhhcCCCCccEEeeCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~ 130 (179)
. .++||+|+++.++.
T Consensus 258 ---~-~~~fDlIvsNPPFH 272 (342)
T PRK09489 258 ---I-KGRFDMIISNPPFH 272 (342)
T ss_pred ---c-CCCccEEEECCCcc
Confidence 1 35799999997653
No 114
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.08 E-value=8.6e-06 Score=69.76 Aligned_cols=70 Identities=17% Similarity=0.345 Sum_probs=56.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C--C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A--P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~--~-~~~v~~i~gDi~~~~ 106 (179)
+.++++|||||||+|.+|..++++. .+|+|+|+++. . . ..+++++++|+.+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~---------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA---------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 3678999999999999999998863 57999999982 1 1 357999999998753
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTG 133 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g 133 (179)
+ ..+|.|+++.+.+.+.
T Consensus 99 --------~--~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 99 --------F--PYFDVCVANVPYQISS 115 (294)
T ss_pred --------c--cccCEEEecCCcccCc
Confidence 1 3689999998876654
No 115
>PRK14968 putative methyltransferase; Provisional
Probab=98.08 E-value=1.2e-05 Score=62.68 Aligned_cols=66 Identities=23% Similarity=0.379 Sum_probs=51.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC--eeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG--VIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~--v~~i~gDi~~~~ 106 (179)
.++.+|||+|||+|.++..++.+ + ..|+|+|+++.. ...+ +.++++|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~--------------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G--------------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c--------------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-
Confidence 67889999999999999999887 3 689999999831 1222 88889998663
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+..||+|+++.+.
T Consensus 86 --------~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 86 --------FRGDKFDVILFNPPY 100 (188)
T ss_pred --------ccccCceEEEECCCc
Confidence 233479999997653
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.08 E-value=6.7e-06 Score=74.00 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=52.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++.+|||||||+|.++..++++. .+|+|+|+++.. ..+++.++++|+.+...
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~---------------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~--- 97 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA---------------GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL--- 97 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC---------------CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc---
Confidence 356799999999999999999863 589999999831 13578899999975321
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
.+++.+||+|++..+
T Consensus 98 ---~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 98 ---NISDGSVDLIFSNWL 112 (475)
T ss_pred ---CCCCCCEEEEehhhh
Confidence 145568999999764
No 117
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.06 E-value=1.1e-05 Score=65.21 Aligned_cols=63 Identities=21% Similarity=0.101 Sum_probs=47.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
++|||+|||+|+++..+++..+ ...|+|+|+++.. . ..+++++.+|+.+.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-------------~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~---- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-------------HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP---- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC----
Confidence 3799999999999999998864 4789999999831 1 135788889986542
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
++ .+||+|++..
T Consensus 64 ----~~-~~fD~I~~~~ 75 (224)
T smart00828 64 ----FP-DTYDLVFGFE 75 (224)
T ss_pred ----CC-CCCCEeehHH
Confidence 12 3688887643
No 118
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.06 E-value=1.1e-05 Score=71.71 Aligned_cols=69 Identities=7% Similarity=0.082 Sum_probs=55.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~ 108 (179)
+.+..+||||||+|.++..++.+.+ ...++|+|+++- ..+.|+.++++|+....
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-------------~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-- 185 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-------------NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-- 185 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-------------CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh--
Confidence 3467899999999999999999975 589999999972 13679999999987532
Q ss_pred HHHHhhcCCCCccEEeeCC
Q 030299 109 EVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~ 127 (179)
..++++.+|.|++.-
T Consensus 186 ----~~~~~~s~D~I~lnF 200 (390)
T PRK14121 186 ----ELLPSNSVEKIFVHF 200 (390)
T ss_pred ----hhCCCCceeEEEEeC
Confidence 235677899999865
No 119
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.04 E-value=1.5e-05 Score=64.60 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||||||+|.++..++.+. ..+|+++|+++.. ...+++++.+|+.+..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--------------a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l-- 115 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--------------AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL-- 115 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--------------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH--
Confidence 457899999999999998765553 3689999999831 2457889999986532
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.. ....||+|++|.+.
T Consensus 116 ----~~-~~~~fDlV~~DPPy 131 (199)
T PRK10909 116 ----AQ-PGTPHNVVFVDPPF 131 (199)
T ss_pred ----hh-cCCCceEEEECCCC
Confidence 11 13469999999764
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.04 E-value=9e-06 Score=70.31 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=45.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C--------CCCeeEEeccccc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P--------IEGVIQVQGDITN 104 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~--------~~~v~~i~gDi~~ 104 (179)
++.+|||||||+|.++..++++ ...|+|+|+++.. . ..++.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 5789999999999999999875 2689999999821 1 1245677777644
Q ss_pred hhhHHHHHhhcCCCCccEEeeCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. ++.||+|++-.
T Consensus 209 l-----------~~~fD~Vv~~~ 220 (315)
T PLN02585 209 L-----------SGKYDTVTCLD 220 (315)
T ss_pred c-----------CCCcCEEEEcC
Confidence 2 25799998754
No 121
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.04 E-value=1.3e-05 Score=64.83 Aligned_cols=63 Identities=27% Similarity=0.291 Sum_probs=47.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.++..+++.. ..|+|+|+++.. .. .++.+.++|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---------------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---------------AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--- 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---------------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---
Confidence 467899999999999999998752 569999999831 12 367888888432
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
....||+|++...
T Consensus 124 --------~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 --------LLGRFDTVVCLDV 136 (230)
T ss_pred --------ccCCcCEEEEcch
Confidence 1357999998654
No 122
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.03 E-value=1.2e-05 Score=65.84 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCee
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v~ 96 (179)
.++.+|||+|||.|-.+.+++++ +..|+|+|+|+.. . ..+|+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 57789999999999999999986 3689999999841 1 13578
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++|+++.+.. ...+||.|+-.+.
T Consensus 98 ~~~~D~~~~~~~-------~~~~fD~i~D~~~ 122 (213)
T TIGR03840 98 IFCGDFFALTAA-------DLGPVDAVYDRAA 122 (213)
T ss_pred EEEccCCCCCcc-------cCCCcCEEEechh
Confidence 889999886420 1246888876543
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=8.4e-06 Score=69.33 Aligned_cols=62 Identities=27% Similarity=0.394 Sum_probs=49.9
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+|||||||+|-.+..++.+.+ ...|+|+|++|-. .+.++.++++|.++.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-------------~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~------ 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-------------DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL------ 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-------------CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc------
Confidence 799999999999999999876 5799999999931 1244667777887752
Q ss_pred hhcCCCCccEEeeCCC
Q 030299 113 RHFDGCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~ 128 (179)
. ++||+|+|+.+
T Consensus 174 ---~-~~fDlIVsNPP 185 (280)
T COG2890 174 ---R-GKFDLIVSNPP 185 (280)
T ss_pred ---C-CceeEEEeCCC
Confidence 3 38999999975
No 124
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.02 E-value=2.6e-05 Score=66.64 Aligned_cols=73 Identities=21% Similarity=0.197 Sum_probs=51.5
Q ss_pred CcchhhhcHHhH--HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-C-----C--
Q 030299 21 WRARSAFKLLQI--DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-M-----A-- 90 (179)
Q Consensus 21 ~~sRaa~KL~ei--d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~-----~-- 90 (179)
|+.|....+++- .+....+.++.+|||||||+|.+|..+++.... ...|+|+|+|+ | +
T Consensus 41 y~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~------------~~~~~~iDiS~~mL~~a~~~l 108 (301)
T TIGR03438 41 YPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQ------------PARYVPIDISADALKESAAAL 108 (301)
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhcc------------CCeEEEEECCHHHHHHHHHHH
Confidence 455665555432 122234567889999999999999999998741 36899999998 2 1
Q ss_pred --CCCC--eeEEeccccch
Q 030299 91 --PIEG--VIQVQGDITNA 105 (179)
Q Consensus 91 --~~~~--v~~i~gDi~~~ 105 (179)
..++ +..+++|+++.
T Consensus 109 ~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 109 AADYPQLEVHGICADFTQP 127 (301)
T ss_pred HhhCCCceEEEEEEcccch
Confidence 1244 56789999874
No 125
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.01 E-value=5.5e-06 Score=58.57 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=35.9
Q ss_pred EEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-----CCCeeEEeccccchhhHHHHHhh
Q 030299 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-----IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 46 lDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-----~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
||+|||+|.++..+++..+ ..+++|+|+++.. . ..+...++.+..+... .
T Consensus 1 LdiGcG~G~~~~~l~~~~~-------------~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~------~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-------------DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFD------Y 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---------C
T ss_pred CEeCccChHHHHHHHHhCC-------------CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhh------c
Confidence 7999999999999999875 5899999999932 1 1233344444333211 1
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
...++||+|++...
T Consensus 62 ~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 62 DPPESFDLVVASNV 75 (99)
T ss_dssp CC----SEEEEE-T
T ss_pred ccccccceehhhhh
Confidence 12258999998754
No 126
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.01 E-value=8.2e-06 Score=66.22 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=45.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHHHHh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+++|+|||.|-+|..|+.+. ..++++|+++. ...++|+++++|+.+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---------------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~------- 102 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---------------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW------- 102 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---------------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---------
T ss_pred ceeEecCCCccHHHHHHHHhh---------------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-------
Confidence 579999999999999999986 48999999983 34689999999998753
Q ss_pred hcCCCCccEEeeCC
Q 030299 114 HFDGCKADLVVCDG 127 (179)
Q Consensus 114 ~~~~~~~D~VlsD~ 127 (179)
++++||+|+..-
T Consensus 103 --P~~~FDLIV~SE 114 (201)
T PF05401_consen 103 --PEGRFDLIVLSE 114 (201)
T ss_dssp ---SS-EEEEEEES
T ss_pred --CCCCeeEEEEeh
Confidence 567999998753
No 127
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.98 E-value=1.9e-05 Score=65.67 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|||+|||+|.+|..++++. ..|+++|+++.. ..++++++.+|+.+.+..
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---------------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~-- 90 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---------------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP-- 90 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---------------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--
Confidence 568899999999999999999874 359999999831 136788999999886521
Q ss_pred HHhhcCCCCc---cEEeeCCCC
Q 030299 111 VIRHFDGCKA---DLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~~~~---D~VlsD~~~ 129 (179)
.+ ++|+++.+.
T Consensus 91 --------~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --------DFPKQLKVVSNLPY 104 (253)
T ss_pred --------HcCCcceEEEcCCh
Confidence 23 489998764
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=97.97 E-value=2.9e-05 Score=66.64 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=50.1
Q ss_pred CCCEEEEEccCCChHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CC-CCeeEEeccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~-~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~-~~v~~i~gDi~~~~ 106 (179)
++++|+|||||||+.|..+.. +..+ +++++++|+++.. .+ ++++|.++|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p------------~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP------------TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC------------CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc
Confidence 678999999999998776544 3332 6899999999831 12 46999999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~ 127 (179)
. ...+||+|+++.
T Consensus 191 ~--------~l~~FDlVF~~A 203 (296)
T PLN03075 191 E--------SLKEYDVVFLAA 203 (296)
T ss_pred c--------ccCCcCEEEEec
Confidence 1 125799999983
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.97 E-value=4.2e-05 Score=72.53 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=54.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~ 106 (179)
.+|.+|||||||+|+++.+++.. + ...|+++|+++.. .+ .+++++++|+++..
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G-------------a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G-------------AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL 602 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH
Confidence 45889999999999999999875 3 3579999999831 12 36889999998742
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
. .+ +++||+|++|.+.-..
T Consensus 603 ~------~~-~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 603 K------EA-REQFDLIFIDPPTFSN 621 (702)
T ss_pred H------Hc-CCCcCEEEECCCCCCC
Confidence 1 12 3589999999654433
No 130
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.95 E-value=2e-05 Score=66.91 Aligned_cols=66 Identities=21% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~ 106 (179)
..++.+|||+|||+|..+..++.. + ..+|+|+|+++.. .+. .+.+..+|...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g-------------~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-- 220 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G-------------AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-- 220 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C-------------CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--
Confidence 357899999999999999887754 3 3689999999842 111 23344444221
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.+||+|+++..
T Consensus 221 --------~~~~~fDlVvan~~ 234 (288)
T TIGR00406 221 --------PIEGKADVIVANIL 234 (288)
T ss_pred --------ccCCCceEEEEecC
Confidence 22458999999864
No 131
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.94 E-value=2.2e-05 Score=53.29 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++|+|||+|..+..+++ .+ ...++++|+++.. ....+.++.+|+.+...
T Consensus 1 ~ildig~G~G~~~~~~~~-~~-------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GP-------------GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----- 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CC-------------CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-----
Confidence 489999999999999987 22 5799999999731 23467888999988652
Q ss_pred hhcCCCCccEEeeCCCC
Q 030299 113 RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~ 129 (179)
....++|+|+++...
T Consensus 62 --~~~~~~d~i~~~~~~ 76 (107)
T cd02440 62 --EADESFDVIISDPPL 76 (107)
T ss_pred --ccCCceEEEEEccce
Confidence 124579999998864
No 132
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.93 E-value=3.5e-05 Score=68.81 Aligned_cols=70 Identities=21% Similarity=0.344 Sum_probs=53.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++.+|||+|||+|.++..++... .+|+|+|+++.. .+.+++++++|+.+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l-- 353 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL-- 353 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH--
Confidence 567899999999999999998763 589999999831 2568999999997631
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+. +.+..||+|+.|.+
T Consensus 354 ~~~~--~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 PKQP--WAGQIPDVLLLDPP 371 (431)
T ss_pred HHHH--hcCCCCCEEEECcC
Confidence 1111 22346999999875
No 133
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.92 E-value=4.2e-05 Score=61.51 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~ 107 (179)
++||++++|+|||+|+.+..++ +.++ .++|+|+|-.+.. ..+|++.+.||.-+.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~p------------~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-- 96 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAGP------------SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-- 96 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhCC------------CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh--
Confidence 3789999999999999999998 5543 7999999988731 368999999997664
Q ss_pred HHHHHhhcCCC-CccEEeeCCC
Q 030299 108 AEVVIRHFDGC-KADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~-~~D~VlsD~~ 128 (179)
+++. .+|.|+.-|+
T Consensus 97 -------L~~~~~~daiFIGGg 111 (187)
T COG2242 97 -------LPDLPSPDAIFIGGG 111 (187)
T ss_pred -------hcCCCCCCEEEECCC
Confidence 2222 6999998764
No 134
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.91 E-value=1.5e-05 Score=69.41 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=53.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCC-eeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEG-VIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~-v~~i~gDi~~~~~~ 108 (179)
-++..|||+|||+|..|...++.. ..+|+|||-+.+. ...+ +++++|.+.+.+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG--------------A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~-- 122 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG--------------ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE-- 122 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC--------------cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--
Confidence 468899999999999999999874 3699999999973 1334 778899999985
Q ss_pred HHHHhhcCCCCccEEeeC
Q 030299 109 EVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD 126 (179)
+|.+++|+|+|.
T Consensus 123 ------LP~eKVDiIvSE 134 (346)
T KOG1499|consen 123 ------LPVEKVDIIVSE 134 (346)
T ss_pred ------cCccceeEEeeh
Confidence 466799999985
No 135
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.88 E-value=1.3e-05 Score=68.83 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
..+|++|||+|||+|..+..++.. + ..+|+|+|+.|.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G-------------A~~v~a~DiDp~ 195 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G-------------AKKVVAIDIDPL 195 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T-------------BSEEEEEESSCH
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEecCCHH
Confidence 478899999999999999988775 4 368999999995
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.4e-05 Score=62.45 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~ 107 (179)
+++|++|||||||.|.-+-++++.. ++|+++|..+. ..++||.+++||-..-..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~---------------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV---------------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh---------------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 3789999999999999999999986 58999999873 136789999999987432
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+..+||.|+..++.
T Consensus 135 --------~~aPyD~I~Vtaaa 148 (209)
T COG2518 135 --------EEAPYDRIIVTAAA 148 (209)
T ss_pred --------CCCCcCEEEEeecc
Confidence 24789999998764
No 137
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=5.6e-06 Score=71.11 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+++|++|||+|||+|..+..+++. + ..+|+|+|+.|.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-G-------------A~~v~g~DiDp~ 196 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-G-------------AKKVVGVDIDPQ 196 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-C-------------CceEEEecCCHH
Confidence 469999999999999999888775 4 378999999996
No 138
>PRK04148 hypothetical protein; Provisional
Probab=97.84 E-value=3.9e-05 Score=58.74 Aligned_cols=67 Identities=18% Similarity=0.093 Sum_probs=50.4
Q ss_pred CCCCEEEEEccCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhh
Q 030299 40 EGVKRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 40 ~~g~~VlDLgagpGg-~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.++.+|+|+|||.|. .+..|++. +..|+|+|++|.. ...++.++.+|+++++..
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~---------------G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~------ 73 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES---------------GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE------ 73 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC---------------CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH------
Confidence 356899999999996 88888754 3799999999953 124788999999997631
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+ -+.+|+|.|-=+
T Consensus 74 ~-y~~a~liysirp 86 (134)
T PRK04148 74 I-YKNAKLIYSIRP 86 (134)
T ss_pred H-HhcCCEEEEeCC
Confidence 1 246899988543
No 139
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.82 E-value=5.2e-05 Score=66.79 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+||||+||.|.++..++.+ ...|+|+|+++.. .+.+++++.+|+.+...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~---------------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~-- 295 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP---------------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFAT-- 295 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc---------------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHH--
Confidence 4679999999999999999864 3589999999831 24578999999976431
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+||+|+.|.+
T Consensus 296 ----~~-~~~~D~vi~DPP 309 (374)
T TIGR02085 296 ----AQ-MSAPELVLVNPP 309 (374)
T ss_pred ----hc-CCCCCEEEECCC
Confidence 11 135999999944
No 140
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.82 E-value=1.7e-05 Score=66.86 Aligned_cols=60 Identities=25% Similarity=0.322 Sum_probs=44.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCC-C-----CeeEEeccccc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------API-E-----GVIQVQGDITN 104 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~-~-----~v~~i~gDi~~ 104 (179)
|++|||+|||.|-.|+.|++. +..|+|+|+++. .|. . .+++...|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---------------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---------------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CceEEEeccCccccchhhHhh---------------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh
Confidence 488999999999999999886 368999999983 121 1 25556666665
Q ss_pred hhhHHHHHhhcCCCCccEEeeCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.. +.||.|+|..
T Consensus 155 ~~-----------~~fDaVvcse 166 (282)
T KOG1270|consen 155 LT-----------GKFDAVVCSE 166 (282)
T ss_pred cc-----------cccceeeeHH
Confidence 32 4699999854
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.79 E-value=9.9e-05 Score=61.04 Aligned_cols=75 Identities=17% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.++.+|||+|||+|.-+.+++..++. .++|+++|+++.. .+ ..++++.||+.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~------------~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-- 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPE------------DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-- 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH--
Confidence 46789999999999999999887763 6899999999831 22 3588899998763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..++....+.++||+|+.|+.
T Consensus 133 L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHhCCCCCCCCEEEECCC
Confidence 233332222458999999975
No 142
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=3.3e-05 Score=60.28 Aligned_cols=105 Identities=23% Similarity=0.228 Sum_probs=68.3
Q ss_pred hCCcchh--hhcHH-hHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----
Q 030299 19 EGWRARS--AFKLL-QIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----- 90 (179)
Q Consensus 19 ~~~~sRa--a~KL~-eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----- 90 (179)
+.|..|+ |-.+. .|+..++- -.|.+++|||||.|-.+...+ ++. ...|+|+|+.|.+
T Consensus 24 EQY~T~p~iAasM~~~Ih~Tygd-iEgkkl~DLgcgcGmLs~a~s--m~~------------~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 24 EQYPTRPHIAASMLYTIHNTYGD-IEGKKLKDLGCGCGMLSIAFS--MPK------------NESVLGFDIDPEALEIFT 88 (185)
T ss_pred hhCCCcHHHHHHHHHHHHhhhcc-ccCcchhhhcCchhhhHHHhh--cCC------------CceEEeeecCHHHHHHHh
Confidence 3455554 33333 34455542 257899999999999883332 332 4789999999942
Q ss_pred -C---C-CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHH
Q 030299 91 -P---I-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI 146 (179)
Q Consensus 91 -~---~-~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~ 146 (179)
. . -++.++|+||.+++ +....||.++-|.++-+......-++.|..|-
T Consensus 89 rNaeEfEvqidlLqcdildle--------~~~g~fDtaviNppFGTk~~~aDm~fv~~al~ 141 (185)
T KOG3420|consen 89 RNAEEFEVQIDLLQCDILDLE--------LKGGIFDTAVINPPFGTKKKGADMEFVSAALK 141 (185)
T ss_pred hchHHhhhhhheeeeeccchh--------ccCCeEeeEEecCCCCcccccccHHHHHHHHH
Confidence 1 1 15678999999987 34578999999987765554433355554443
No 143
>PLN02366 spermidine synthase
Probab=97.76 E-value=0.00014 Score=62.69 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C--C-------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A--P-------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~--~-------~~~v~~i~gDi~~ 104 (179)
.+..+||+||+|.|+....+++. +. ..+|+.||+.+. + + -++++++.+|...
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~------------v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~ 156 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SS------------VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE 156 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC------------CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH
Confidence 55789999999999999999865 31 468999999983 0 1 2578899999766
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.- +..++++||+|++|...+
T Consensus 157 ~l------~~~~~~~yDvIi~D~~dp 176 (308)
T PLN02366 157 FL------KNAPEGTYDAIIVDSSDP 176 (308)
T ss_pred HH------hhccCCCCCEEEEcCCCC
Confidence 31 112346799999998643
No 144
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=8.8e-05 Score=62.27 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=57.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~~ 106 (179)
++||++|+|.|.|.|..|.+|++.+++ .++|+.+|+.+.. .+.+ |.+..+|+.+..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~------------~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGP------------EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCC------------CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 489999999999999999999998875 6999999999831 2333 888889999864
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+..||.|+.|+.
T Consensus 160 ---------~~~~vDav~LDmp 172 (256)
T COG2519 160 ---------DEEDVDAVFLDLP 172 (256)
T ss_pred ---------cccccCEEEEcCC
Confidence 2348999999994
No 145
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.74 E-value=5.8e-05 Score=60.97 Aligned_cols=71 Identities=25% Similarity=0.307 Sum_probs=53.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~~~ 107 (179)
+...+|||||||.|.+..-|++.-= .+..+|+|.++.+ ..+| ++|.|.||+++.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf-------------~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~- 131 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGF-------------QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD- 131 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcC-------------CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-
Confidence 3345999999999999998887632 3569999999841 2345 889999999974
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+...+||+|+--|..++
T Consensus 132 -------~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 132 -------FLSGQFDLVLDKGTLDA 148 (227)
T ss_pred -------ccccceeEEeecCceee
Confidence 34568999987765444
No 146
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.72 E-value=8e-05 Score=62.66 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=49.0
Q ss_pred CCCEEEEEccCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCC------------------
Q 030299 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------API------------------ 92 (179)
Q Consensus 41 ~g~~VlDLgagpGg----~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~------------------ 92 (179)
++.+|+|+|||+|. ++..+++..+. ......+|+|+|+++. +..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~--------~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf 170 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPK--------AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYF 170 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhh--------cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhE
Confidence 45699999999996 56666665431 0011468999999983 111
Q ss_pred --------------CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 93 --------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 93 --------------~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.+|.|.++|+.+.+ .+.++||+|+|..
T Consensus 171 ~~~~~~~~v~~~ir~~V~F~~~dl~~~~--------~~~~~fD~I~crn 211 (264)
T smart00138 171 SRVEDKYRVKPELKERVRFAKHNLLAES--------PPLGDFDLIFCRN 211 (264)
T ss_pred EeCCCeEEEChHHhCcCEEeeccCCCCC--------CccCCCCEEEech
Confidence 25788899998864 2356899999853
No 147
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.71 E-value=7.4e-05 Score=63.63 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC-CCeeEEeccccchhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~-~~v~~i~gDi~~~~~ 107 (179)
++++.+|||+|||+|.++..++++.+ ..+++++|+.++. .. .+++++.+|+++..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p-------------~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP-------------ELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC-------------CCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-
Confidence 36788999999999999999999976 5789999974431 12 35889999998642
Q ss_pred HHHHHhhcCCCCccEEeeC
Q 030299 108 AEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD 126 (179)
++ .+|+|+..
T Consensus 213 -------~~--~~D~v~~~ 222 (306)
T TIGR02716 213 -------YP--EADAVLFC 222 (306)
T ss_pred -------CC--CCCEEEeE
Confidence 22 35887654
No 148
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.70 E-value=3.4e-05 Score=60.90 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=42.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C----CCCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P----IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~----~~~v~~i~gDi~~~~~~~~ 110 (179)
+.|+|++||-||-+..++... .+|+|+|+.|.. . ..++.++.||+.+...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---------------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--- 62 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---------------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--- 62 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG---
T ss_pred CEEEEeccCcCHHHHHHHHhC---------------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh---
Confidence 379999999999999999974 589999999952 1 2368999999998532
Q ss_pred HHhhcCCCC-ccEEeeCC
Q 030299 111 VIRHFDGCK-ADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~-~D~VlsD~ 127 (179)
.+.... +|+|+.+.
T Consensus 63 ---~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 63 ---RLKSNKIFDVVFLSP 77 (163)
T ss_dssp ---GB------SEEEE--
T ss_pred ---hccccccccEEEECC
Confidence 222222 89999874
No 149
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.69 E-value=0.00021 Score=60.75 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=58.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~-~~v~~i~gDi~~~~ 106 (179)
+++++.||++|-|||..|..+.+.. .+|+|+++.| |. |. .-.+.+.||+...+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---------------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---------------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---------------CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 4899999999999999999999973 6899999999 31 11 24788899999875
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
+ ..||.++++.++..|..
T Consensus 121 --------~--P~fd~cVsNlPyqISSp 138 (315)
T KOG0820|consen 121 --------L--PRFDGCVSNLPYQISSP 138 (315)
T ss_pred --------C--cccceeeccCCccccCH
Confidence 2 36999999998877655
No 150
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00022 Score=60.17 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=57.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++.||+||+|.|..|+.|+++. .+|+|+++.+. ....+++.+++|+...+.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---------------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~--- 90 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---------------ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDF--- 90 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---------------CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcc---
Confidence 558999999999999999999984 57999999983 135689999999988763
Q ss_pred HHhhcCCC-CccEEeeCCCCCCCCC
Q 030299 111 VIRHFDGC-KADLVVCDGAPDVTGL 134 (179)
Q Consensus 111 l~~~~~~~-~~D~VlsD~~~~~~g~ 134 (179)
+.- .++.|+++.+=+.|..
T Consensus 91 -----~~l~~~~~vVaNlPY~Issp 110 (259)
T COG0030 91 -----PSLAQPYKVVANLPYNISSP 110 (259)
T ss_pred -----hhhcCCCEEEEcCCCcccHH
Confidence 211 6899999987655543
No 151
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.66 E-value=7.4e-05 Score=61.76 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=56.3
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--C-------CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A-------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~-------~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|.+||-|||++|.--.++++-+++ +|.|+||+.+|. + ..+|+.-+-+|.+.++...
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~------------~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGP------------DGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR 138 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTT------------TSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT
T ss_pred CCCCCEEEEecccCCCccchhhhccCC------------CCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh
Confidence 589999999999999999999999975 799999999993 2 2589999999999987532
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
. +- +.+|+|++|.+
T Consensus 139 ~----lv-~~VDvI~~DVa 152 (229)
T PF01269_consen 139 M----LV-EMVDVIFQDVA 152 (229)
T ss_dssp T----TS---EEEEEEE-S
T ss_pred c----cc-ccccEEEecCC
Confidence 2 33 38999999986
No 152
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.65 E-value=0.00011 Score=60.17 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=47.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCee
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v~ 96 (179)
.++.+|||+|||.|--+.+|+++ +..|+|||+++.. . ...|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~---------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ---------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC---------------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 56789999999999999999985 3689999999841 0 13477
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD 126 (179)
+.++|+++.... ....||.|+--
T Consensus 101 ~~~~D~~~l~~~-------~~~~fd~v~D~ 123 (218)
T PRK13255 101 IYCGDFFALTAA-------DLADVDAVYDR 123 (218)
T ss_pred EEECcccCCCcc-------cCCCeeEEEeh
Confidence 789999886421 11356777643
No 153
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.65 E-value=0.00014 Score=62.14 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------CCCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------~~~~v~~i~gDi~~~~ 106 (179)
..|.+||||.|-+||||.+++.. + ...|++||.|... ....++++++|+++..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-G-------------A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-G-------------AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL 187 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-T-------------ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH
T ss_pred cCCCceEEecCCCCHHHHHHHHC-C-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH
Confidence 45889999999999999998753 2 3589999999731 2357889999998853
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+++.+ .++||+|+.|.+.-..+.+.... --.+|+..+++
T Consensus 188 --~~~~~---~~~fD~IIlDPPsF~k~~~~~~~-~y~~L~~~a~~ 226 (286)
T PF10672_consen 188 --KRLKK---GGRFDLIILDPPSFAKSKFDLER-DYKKLLRRAMK 226 (286)
T ss_dssp --HHHHH---TT-EEEEEE--SSEESSTCEHHH-HHHHHHHHHHH
T ss_pred --HHHhc---CCCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHHH
Confidence 23322 35899999998876676655432 12344444443
No 154
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.65 E-value=0.001 Score=55.97 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=49.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
..+.+||+||||.|+.+..++...+ ...|+++|+++.. ..++++++.+|..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-------------~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~ 137 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-------------VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFK 137 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-------------cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHH
Confidence 3456999999999999988877542 3689999999831 02456666767654
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
.- +.. .++||+|++|...
T Consensus 138 ~l------~~~-~~~yDvIi~D~~~ 155 (270)
T TIGR00417 138 FL------ADT-ENTFDVIIVDSTD 155 (270)
T ss_pred HH------HhC-CCCccEEEEeCCC
Confidence 21 112 3589999999763
No 155
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.64 E-value=0.0001 Score=61.28 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+.++.+|||+|||+|..+..++.. + ...|+|+|+++.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-------------~~~v~giDis~~ 153 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-------------AKKVLAVDIDPQ 153 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-------------CCeEEEEECCHH
Confidence 467899999999999888876654 3 247999999984
No 156
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.63 E-value=0.00017 Score=60.48 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~ 106 (179)
++||++|+|.|.|.|++|.++++.+++ .|+|+.+|..+.. .+ .+|.+...|+.+.-
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p------------~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGP------------TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTT------------TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCC------------CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 489999999999999999999999975 7999999998731 23 47899999997532
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+ +..+|.|+.|+.
T Consensus 106 ~~----~~~-~~~~DavfLDlp 122 (247)
T PF08704_consen 106 FD----EEL-ESDFDAVFLDLP 122 (247)
T ss_dssp -S----TT--TTSEEEEEEESS
T ss_pred cc----ccc-cCcccEEEEeCC
Confidence 10 011 357999999995
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.60 E-value=0.00021 Score=57.35 Aligned_cols=72 Identities=11% Similarity=0.012 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
+|.+||||+||+|.++..++.+. ...|++||.++.. .. .+++++++|+.+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--------------a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l-- 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--------------AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL-- 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--------------CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH--
Confidence 57899999999999999999884 2589999999831 12 25788899986532
Q ss_pred HHHHhhcCCCCccEEeeCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+.. ....+|+|+.|.+..
T Consensus 113 ~~~~~--~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 113 KFLAK--KPTFDNVIYLDPPFF 132 (189)
T ss_pred HHhhc--cCCCceEEEECcCCC
Confidence 11111 123589999997653
No 158
>PLN02476 O-methyltransferase
Probab=97.59 E-value=0.0003 Score=59.94 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.+..+|||||++.|..|.+++..++. +++|+++|..+.. .+ ..++++.||..+.
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~------------~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-- 182 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE------------SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-- 182 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC------------CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--
Confidence 45789999999999999999998764 6899999999831 23 3688889998763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++......++||+|+.|+.
T Consensus 183 L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHhcccCCCCCEEEECCC
Confidence 233322112358999999986
No 159
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.56 E-value=0.00041 Score=55.30 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=67.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------CCCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------APIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.|..||++|.|+|-+|..++.+.-. ...+.+++.++- +..+++.++.||.++.++. +.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~------------~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~--l~- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVR------------PESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT--LG- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCC------------ccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH--Hh-
Confidence 34678999999999999999887542 468999999983 4578999999999998742 22
Q ss_pred hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 114 HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
.+++..||.|+|-.+ ..+..-..+++++..++.
T Consensus 112 e~~gq~~D~viS~lP-----ll~~P~~~~iaile~~~~ 144 (194)
T COG3963 112 EHKGQFFDSVISGLP-----LLNFPMHRRIAILESLLY 144 (194)
T ss_pred hcCCCeeeeEEeccc-----cccCcHHHHHHHHHHHHH
Confidence 245668999998654 233444556666666655
No 160
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.56 E-value=0.00019 Score=58.41 Aligned_cols=66 Identities=20% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++.+|||||||+|.++..+++. ...|+++|+++.. ....+.++++|+.+...
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-- 109 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---------------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA-- 109 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---------------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhh--
Confidence 46789999999999999988775 2579999999731 01245666777765421
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
..+.+||+|++..
T Consensus 110 -----~~~~~fD~Ii~~~ 122 (233)
T PRK05134 110 -----EHPGQFDVVTCME 122 (233)
T ss_pred -----hcCCCccEEEEhh
Confidence 1236899998854
No 161
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.55 E-value=0.0002 Score=57.60 Aligned_cols=65 Identities=20% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|||+|||+|.++..+++. ...++++|+++.. ...++.+..+|+.+...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---------------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-- 107 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---------------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE-- 107 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---------------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc--
Confidence 4779999999999999988764 2569999998731 12257777787765431
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
-...+||+|++..
T Consensus 108 -----~~~~~~D~i~~~~ 120 (224)
T TIGR01983 108 -----KGAKSFDVVTCME 120 (224)
T ss_pred -----CCCCCccEEEehh
Confidence 0125799998864
No 162
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.55 E-value=0.0002 Score=63.78 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=52.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC--CCeeEEeccccchhhH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI--EGVIQVQGDITNARTA 108 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~--~~v~~i~gDi~~~~~~ 108 (179)
|++||||.|-||+||.+++..- ..+|++||++.-. .+ ..+.++++|+++.-.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--------------A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~- 282 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--------------ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLR- 282 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--------------CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH-
Confidence 8999999999999999998752 3599999999831 12 236799999998532
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+... .+.+||+|+.|.+.
T Consensus 283 -~~~~--~g~~fDlIilDPPs 300 (393)
T COG1092 283 -KAER--RGEKFDLIILDPPS 300 (393)
T ss_pred -HHHh--cCCcccEEEECCcc
Confidence 2221 24589999999753
No 163
>PLN02672 methionine S-methyltransferase
Probab=97.54 E-value=0.00015 Score=71.68 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--C----------------CC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--I----------------EG 94 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~--~----------------~~ 94 (179)
+.+|||||||+|..+..++++.+ ..+|+|+|+++.. . + .+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-------------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-------------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-------------CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc
Confidence 46899999999999999999875 4799999999941 0 0 25
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++++|+.+... . .+.+||+|+|+.+
T Consensus 186 V~f~~sDl~~~~~------~-~~~~fDlIVSNPP 212 (1082)
T PLN02672 186 VEFYESDLLGYCR------D-NNIELDRIVGCIP 212 (1082)
T ss_pred EEEEECchhhhcc------c-cCCceEEEEECCC
Confidence 8999999987421 0 1136999999875
No 164
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.52 E-value=0.00031 Score=61.70 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=50.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.+||||+||+|.++..++... .+|+|+|+++.. .+.+++++.+|+.+.- +.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l--~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---------------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT--QAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---------------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH--HHH
Confidence 579999999999999887753 589999999831 2457899999997742 222
Q ss_pred Hhhc----------CCCCccEEeeCCC
Q 030299 112 IRHF----------DGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~----------~~~~~D~VlsD~~ 128 (179)
.... ...++|+|+.|.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 271 NGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred hhcccccccccccccCCCCCEEEECCC
Confidence 2110 0225899999965
No 165
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.50 E-value=0.00033 Score=56.49 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=50.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
..+||||||-|.|...+|.+.+ +..++|+|+... ..+.|+.++++|....-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-------------d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l----- 80 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-------------DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELL----- 80 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-------------TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHH-----
T ss_pred CeEEEecCCCCHHHHHHHHHCC-------------CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHH-----
Confidence 3899999999999999999976 689999999983 25789999999998742
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
...++++.+|-|...-
T Consensus 81 ~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINF 96 (195)
T ss_dssp HHHSTTTSEEEEEEES
T ss_pred hhcccCCchheEEEeC
Confidence 1234556788876644
No 166
>PRK03612 spermidine synthase; Provisional
Probab=97.47 E-value=0.00034 Score=64.29 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=51.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------C------------CCCCeeEEecc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------A------------PIEGVIQVQGD 101 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------~------------~~~~v~~i~gD 101 (179)
+++.+|||||||.|..+..+++. +. ..+|+++|+++. + ..++++++.+|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~------------v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PD------------VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC------------cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 45789999999999999998864 31 369999999883 1 01578888888
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.- +.. .++||+|++|..
T Consensus 363 a~~~l------~~~-~~~fDvIi~D~~ 382 (521)
T PRK03612 363 AFNWL------RKL-AEKFDVIIVDLP 382 (521)
T ss_pred HHHHH------HhC-CCCCCEEEEeCC
Confidence 87632 112 358999999964
No 167
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.45 E-value=0.0003 Score=60.67 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.|.+|||||||.|.++-.++.+- ...|+|+|.++.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G--------------A~~ViGiDP~~l 149 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG--------------AKSVIGIDPSPL 149 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC--------------CCEEEEECCChH
Confidence 48899999999999998888773 368999999984
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.43 E-value=0.00056 Score=59.42 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CC-CeeEE-eccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IE-GVIQV-QGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~-~v~~i-~gDi~~~~ 106 (179)
++.+|||||||+|+....++.+.. ...++|+|+++.. + +. .+++. +.|..+..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-------------~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~ 180 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-------------GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF 180 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-------------CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh
Confidence 457899999999999998888765 5799999999841 1 22 34443 23332211
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
..+. .++..||+|+|+.++-.+...
T Consensus 181 --~~i~--~~~~~fDlivcNPPf~~s~~e 205 (321)
T PRK11727 181 --KGII--HKNERFDATLCNPPFHASAAE 205 (321)
T ss_pred --hccc--ccCCceEEEEeCCCCcCcchh
Confidence 0000 134689999999887666654
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.42 E-value=0.00035 Score=56.92 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~ 107 (179)
.+..+||+||++.|.-+.++++.+++ +++|+.+|+.|.. .+ ..++++.||..+.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~------------~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~-- 109 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPE------------DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV-- 109 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTT------------TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH--
T ss_pred cCCceEEEeccccccHHHHHHHhhcc------------cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh--
Confidence 45679999999999999999998874 6999999999831 22 3688899998763
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.++.+..+.++||+|+.|+.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEEST
T ss_pred HHHHHhccCCCceeEEEEccc
Confidence 344444333458999999985
No 170
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.39 E-value=0.00045 Score=60.52 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||||||+|.++..++... ..|+|+|+++.. .+.+++++.+|+.+... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~---------------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~--~ 260 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF---------------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ--A 260 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC---------------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH--H
Confidence 3479999999999999888763 489999999831 24578999999977431 1
Q ss_pred HHh--hc---C-----CCCccEEeeCCC
Q 030299 111 VIR--HF---D-----GCKADLVVCDGA 128 (179)
Q Consensus 111 l~~--~~---~-----~~~~D~VlsD~~ 128 (179)
... .+ . ...+|+|+.|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCC
Confidence 100 01 1 124899999965
No 171
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.38 E-value=0.00054 Score=55.73 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=46.5
Q ss_pred hCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEecccc
Q 030299 36 FNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDIT 103 (179)
Q Consensus 36 ~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~ 103 (179)
.+.+++|++|+|+.||-|.|+..++...+ ...|+|+|++|.. ... .+..+++|..
T Consensus 96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~~-------------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~ 162 (200)
T PF02475_consen 96 ANLVKPGEVVLDMFAGIGPFSLPIAKHGK-------------AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAR 162 (200)
T ss_dssp HTC--TT-EEEETT-TTTTTHHHHHHHT--------------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GG
T ss_pred HhcCCcceEEEEccCCccHHHHHHhhhcC-------------ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHH
Confidence 34568899999999999999999988533 4689999999941 133 4778899988
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.. +...+|.|+.+.+.
T Consensus 163 ~~~---------~~~~~drvim~lp~ 179 (200)
T PF02475_consen 163 EFL---------PEGKFDRVIMNLPE 179 (200)
T ss_dssp G------------TT-EEEEEE--TS
T ss_pred Hhc---------CccccCEEEECChH
Confidence 853 24689999998754
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.36 E-value=0.00067 Score=61.42 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=46.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i~gDi~~~~~~ 108 (179)
++..|+|+|||+|..+..+++..... +...+|+||+-+++. .. ..|+++++|+++.+.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~---------~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l- 255 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARA---------GGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL- 255 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHH---------CCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHh---------CCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-
Confidence 36789999999999998776543100 014699999999952 11 469999999999873
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+ .++|+|+|-..
T Consensus 256 -------p-ekvDIIVSElL 267 (448)
T PF05185_consen 256 -------P-EKVDIIVSELL 267 (448)
T ss_dssp -------S-S-EEEEEE---
T ss_pred -------C-CceeEEEEecc
Confidence 3 48999999764
No 173
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=97.34 E-value=0.0013 Score=59.91 Aligned_cols=146 Identities=24% Similarity=0.264 Sum_probs=91.4
Q ss_pred CcchhhhcHHhHHHHhCCC-CCCC--EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------
Q 030299 21 WRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------- 89 (179)
Q Consensus 21 ~~sRaa~KL~eid~~~~ll-~~g~--~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-------- 89 (179)
+...|+.||.|+...|.+. .++- .=+-||=|||.|-.-+--.+.+ ...++.-.++=.|..++|-
T Consensus 109 ~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s-----~r~k~~~~W~W~anTLNPY~E~n~~~~ 183 (696)
T KOG3674|consen 109 NVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMS-----SRGKNMSYWKWGANTLNPYFENNSCFD 183 (696)
T ss_pred HHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHh-----ccCCccceeeeccCccCcccccchHHH
Confidence 4568899999999999875 4554 3489999999997644322210 0000011223334444441
Q ss_pred --------CC-CCCeeE---EeccccchhhHHHHHh--hcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHH----HHHH
Q 030299 90 --------AP-IEGVIQ---VQGDITNARTAEVVIR--HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLIL----AVSI 151 (179)
Q Consensus 90 --------~~-~~~v~~---i~gDi~~~~~~~~l~~--~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~----~AL~ 151 (179)
.+ +.+--| ..|||.+...+.-+.+ .+ .++||+|.+||+.++.|...-++....+|.. .||+
T Consensus 184 mi~DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~-~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~ 262 (696)
T KOG3674|consen 184 MIIDDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKL-AGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALK 262 (696)
T ss_pred HhccchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHh-hceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 11 111111 2578877654333333 12 3589999999999999999999888777774 4444
Q ss_pred H-----------H--H---HHHHHHHHHHhhceEEEe
Q 030299 152 Q-----------F--F---IYELVFCLRQLLQYVILD 172 (179)
Q Consensus 152 ~-----------~--~---~~~~~~~~~~~f~~v~~~ 172 (179)
. | | +..+||.|+=.|+.|.+-
T Consensus 263 ~L~~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~f 299 (696)
T KOG3674|consen 263 LLRRGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAF 299 (696)
T ss_pred HHhcCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhcc
Confidence 2 1 1 378999999999998763
No 174
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.33 E-value=0.00045 Score=57.88 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=53.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++..|+|+|+|+|.+|..++++. ..|+++|+.+. ...++++.+.+|+.+.+....
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---------------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---------------KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---------------SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred CCCCEEEEeCCCCccchhhHhccc---------------CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 478999999999999999999884 58999999983 124689999999998765322
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+ ......|+++.+
T Consensus 94 ~-----~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 L-----KNQPLLVVGNLP 106 (262)
T ss_dssp C-----SSSEEEEEEEET
T ss_pred h-----cCCceEEEEEec
Confidence 1 235678888765
No 175
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.30 E-value=0.0014 Score=52.01 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=62.9
Q ss_pred cchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------
Q 030299 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------- 90 (179)
Q Consensus 22 ~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------- 90 (179)
+..-|.-|+++ .-.++++.|+|-.||.|.+...++...... .+ ........++|+|+++..
T Consensus 13 ~~~lA~~ll~l----a~~~~~~~vlDP~CGsGtiliEaa~~~~~~---~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~a 84 (179)
T PF01170_consen 13 RPTLAAALLNL----AGWRPGDVVLDPFCGSGTILIEAALMGANI---PP-LNDINELKIIGSDIDPKAVRGARENLKAA 84 (179)
T ss_dssp -HHHHHHHHHH----TT--TTS-EEETT-TTSHHHHHHHHHHTTT---ST-TTH-CH--EEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH----hCCCCCCEEeecCCCCCHHHHHHHHHhhCc---cc-ccccccccEEecCCCHHHHHHHHHHHHhc
Confidence 44445555543 123688999999999999999887765421 00 000001249999999841
Q ss_pred CCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 91 PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 91 ~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
... .+.+.++|+++.+ +.++.+|+|++|.+ .|.+.-++.....|+...+.
T Consensus 85 g~~~~i~~~~~D~~~l~--------~~~~~~d~IvtnPP---yG~r~~~~~~~~~ly~~~~~ 135 (179)
T PF01170_consen 85 GVEDYIDFIQWDARELP--------LPDGSVDAIVTNPP---YGRRLGSKKDLEKLYRQFLR 135 (179)
T ss_dssp T-CGGEEEEE--GGGGG--------GTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHH
T ss_pred ccCCceEEEecchhhcc--------cccCCCCEEEECcc---hhhhccCHHHHHHHHHHHHH
Confidence 122 4678899999976 24568999999986 46655554444566555554
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.29 E-value=0.0003 Score=61.71 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~~ 110 (179)
+..|||+|||.|..+..+++.. ..+|+||+-+.|.. -..+.+|.|-|.+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG--------------A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie---- 239 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG--------------AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE---- 239 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC--------------cceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc----
Confidence 6789999999999999998874 46999999999842 246788899999987
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
++ +++|+++|..
T Consensus 240 ----LP-Ek~DviISEP 251 (517)
T KOG1500|consen 240 ----LP-EKVDVIISEP 251 (517)
T ss_pred ----Cc-hhccEEEecc
Confidence 45 5899999964
No 177
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0011 Score=55.59 Aligned_cols=86 Identities=17% Similarity=0.295 Sum_probs=62.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C------CCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P------IEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~------~~~v~~i~gDi~~~~ 106 (179)
+.|.+|||-|.|=|..+..++++- ..+|+.++..|.- | -.++..+.||+.+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--------------A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~- 197 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--------------AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV- 197 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--------------CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH-
Confidence 348999999999999999988873 3599999988841 1 12678999998873
Q ss_pred hHHHHHhhcCCCCccEEeeCCC-CCCCCCCcccHHHHHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAVS 150 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~-~~~~g~~~~d~~~q~~L~~~AL 150 (179)
.+.|++..||+|++|.+ ++-.| +..+.+++..-.
T Consensus 198 -----V~~~~D~sfDaIiHDPPRfS~Ag-----eLYseefY~El~ 232 (287)
T COG2521 198 -----VKDFDDESFDAIIHDPPRFSLAG-----ELYSEEFYRELY 232 (287)
T ss_pred -----HhcCCccccceEeeCCCccchhh-----hHhHHHHHHHHH
Confidence 45688899999999975 33333 344555554433
No 178
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.16 E-value=0.00031 Score=58.76 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCcCCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe
Q 030299 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL 80 (179)
Q Consensus 1 ~~~~~~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~ 80 (179)
|++++...++.| ..| +-.|++ ++.+ +.+.+-..-+..+|+|||+|.-++.+++.. -.
T Consensus 1 ~~~~~~~~a~~Y-~~A-RP~YPt----dw~~--~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---------------k~ 57 (261)
T KOG3010|consen 1 MAKLFDKQAADY-LNA-RPSYPT----DWFK--KIASRTEGHRLAWDVGTGNGQAARGIAEHY---------------KE 57 (261)
T ss_pred CcccccccHHHH-hhc-CCCCcH----HHHH--HHHhhCCCcceEEEeccCCCcchHHHHHhh---------------hh
Confidence 677778888887 444 445551 1211 122221222379999999997788888774 37
Q ss_pred EEEEeCCC
Q 030299 81 IVAIDLQP 88 (179)
Q Consensus 81 VvavD~~~ 88 (179)
|||+|+++
T Consensus 58 VIatD~s~ 65 (261)
T KOG3010|consen 58 VIATDVSE 65 (261)
T ss_pred heeecCCH
Confidence 99999998
No 179
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0012 Score=54.06 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~ 109 (179)
+++|++||=|||+.|.-..+++.-++ .+.|+||+.+|- +..+|+.-+.+|.+.++...
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-------------~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-------------EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR 140 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-------------CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh
Confidence 58999999999999999999999886 599999999983 23579999999999987644
Q ss_pred HHHhhcCCCCccEEeeCCC
Q 030299 110 VVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~ 128 (179)
.+ - +.+|+|..|.+
T Consensus 141 ~~----V-e~VDviy~DVA 154 (231)
T COG1889 141 HL----V-EKVDVIYQDVA 154 (231)
T ss_pred hh----c-ccccEEEEecC
Confidence 33 2 36999999986
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.16 E-value=0.0041 Score=50.72 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------------C
Q 030299 32 IDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------------P 91 (179)
Q Consensus 32 id~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------------~ 91 (179)
+.++.+ +.+++.++|||||-|.-...++-..+ -.+++||++.+.. .
T Consensus 34 il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~-------------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 34 ILDELN-LTPDDVFYDLGSGVGNVVFQAALQTG-------------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp HHHHTT---TT-EEEEES-TTSHHHHHHHHHH---------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-
T ss_pred HHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcC-------------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555 47899999999999999888777665 3569999999830 1
Q ss_pred CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 92 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 92 ~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
...+++.+||+.+.+..+.+. ...|+|+++..
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~-----s~AdvVf~Nn~ 131 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIW-----SDADVVFVNNT 131 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHG-----HC-SEEEE--T
T ss_pred cccceeeccCccccHhHhhhh-----cCCCEEEEecc
Confidence 235778899999876544432 24799999754
No 181
>PRK01581 speE spermidine synthase; Validated
Probab=97.15 E-value=0.0016 Score=57.70 Aligned_cols=69 Identities=16% Similarity=0.015 Sum_probs=50.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CC-------------CCCeeEEecc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----AP-------------IEGVIQVQGD 101 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~-------------~~~v~~i~gD 101 (179)
....+||+||||.|+.+..+++..+ ..+|++||+++. +. .++++++.+|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~-------------v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET-------------VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC-------------CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 3456999999999998888776532 478999999993 10 2578888888
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.- .. ..+.||+|++|..
T Consensus 216 a~~fL------~~-~~~~YDVIIvDl~ 235 (374)
T PRK01581 216 AKEFL------SS-PSSLYDVIIIDFP 235 (374)
T ss_pred HHHHH------Hh-cCCCccEEEEcCC
Confidence 88632 11 2357999999964
No 182
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.08 E-value=0.00064 Score=56.47 Aligned_cols=64 Identities=23% Similarity=0.281 Sum_probs=46.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+..|||||||+|--++++.+. ....+|+|+|| |. .++| .++.+|+-.--.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~---------------Gh~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Glp------- 107 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS---------------GHQWIGVDISPSMLEQAVERELEG-DLILCDMGEGLP------- 107 (270)
T ss_pred CcEEEEeccCCCcchheeccC---------------CceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCCC-------
Confidence 568999999999999988663 46899999999 31 2332 256777764321
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
|..+.||-|+|=.+
T Consensus 108 frpGtFDg~ISISA 121 (270)
T KOG1541|consen 108 FRPGTFDGVISISA 121 (270)
T ss_pred CCCCccceEEEeee
Confidence 45678999888554
No 183
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.05 E-value=0.0017 Score=54.90 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=59.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------C---CC---CCeeEEeccccchh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------A---PI---EGVIQVQGDITNAR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~---~~---~~v~~i~gDi~~~~ 106 (179)
++++|||+|+|+|-.+.-+.+.++++ .+....+|+.+|++|. + ++ ..+.++.+|..+.+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~-------~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQ-------FGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccc-------cCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 47899999999999999999988631 1122378999999993 1 22 23889999999987
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcccH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDE 139 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~ 139 (179)
|++..+|....-. |.+|..|
T Consensus 173 --------Fdd~s~D~yTiaf-----GIRN~th 192 (296)
T KOG1540|consen 173 --------FDDDSFDAYTIAF-----GIRNVTH 192 (296)
T ss_pred --------CCCCcceeEEEec-----ceecCCC
Confidence 6888999988643 5666554
No 184
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.03 E-value=0.00089 Score=53.56 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~gDi~~~~~~ 108 (179)
+|.+||||.||+|.....++.|- ...|+.||.++.. ... .+..+.+|....-.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--------------A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~- 106 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--------------AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL- 106 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---------------SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH-
T ss_pred CCCeEEEcCCccCccHHHHHhcC--------------CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH-
Confidence 68899999999999999988874 3699999999841 122 47777888765421
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.. -.+.+||+|+.|.+
T Consensus 107 -~~~--~~~~~fDiIflDPP 123 (183)
T PF03602_consen 107 -KLA--KKGEKFDIIFLDPP 123 (183)
T ss_dssp -HHH--HCTS-EEEEEE--S
T ss_pred -hhc--ccCCCceEEEECCC
Confidence 111 13578999999954
No 185
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.99 E-value=0.0011 Score=58.75 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=48.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+|||++||.|.++..++...+ ...|+++|+++.. .+.++++.++|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-------------~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---- 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-------------VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---- 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-------------CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH----
Confidence 46899999999999999988754 3589999999831 2445667788875531
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
.. ...||+|+.|.
T Consensus 121 --~~--~~~fD~V~lDP 133 (382)
T PRK04338 121 --HE--ERKFDVVDIDP 133 (382)
T ss_pred --hh--cCCCCEEEECC
Confidence 11 35699999995
No 186
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.99 E-value=0.0036 Score=54.06 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CC-CCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PI-EGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~-~~v~~i~gDi~~~~~~~ 109 (179)
++|..++|.=+|-||.|..++++.+ .++|+|+|..|.. +. .++++++++..+...
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~-------------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~-- 83 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLG-------------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE-- 83 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCC-------------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH--
Confidence 6788999999999999999999875 4899999999842 22 368899999888642
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.....+..++|.|+.|.+.+.
T Consensus 84 -~l~~~~~~~vDgIl~DLGvSS 104 (305)
T TIGR00006 84 -HLDELLVTKIDGILVDLGVSS 104 (305)
T ss_pred -HHHhcCCCcccEEEEeccCCH
Confidence 222234457999999997654
No 187
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.95 E-value=0.0021 Score=54.98 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=49.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CC-CCeeEE----eccccch
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PI-EGVIQV----QGDITNA 105 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~-~~v~~i----~gDi~~~ 105 (179)
+..++|+|||.|-.+..++..++ .+.|+|+|.++.+ .+ .++..+ +.|..++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-------------~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-------------QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-------------CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc
Confidence 45899999999999999999887 5999999999942 12 234444 4455544
Q ss_pred hhHHHHHhhcCCCCccEEeeCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. +..++.|+++|+.+
T Consensus 216 ~~-------l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 216 HP-------LLEGKIDLLVSNPP 231 (328)
T ss_pred cc-------cccCceeEEecCCC
Confidence 32 34578999999864
No 188
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.95 E-value=0.001 Score=55.12 Aligned_cols=69 Identities=14% Similarity=-0.026 Sum_probs=50.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---------------CCCee
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---------------IEGVI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---------------~~~v~ 96 (179)
.++.+||+.|||.|--..+|+.+ +..|+|+|+|+.. . ..+++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~---------------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK---------------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC---------------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 46789999999999999999986 3689999999841 0 12678
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++++|+++...... ..++||.|.=-++
T Consensus 107 ~~~gD~f~l~~~~~-----~~~~fD~VyDra~ 133 (226)
T PRK13256 107 IYVADIFNLPKIAN-----NLPVFDIWYDRGA 133 (226)
T ss_pred EEEccCcCCCcccc-----ccCCcCeeeeehh
Confidence 99999999742100 1246888765443
No 189
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0025 Score=51.42 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
..-++|||||.|-.|..++...++ ....++.|++|.+ .--++..++.|+.+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~------------~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~------ 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGP------------QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG------ 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCC------------CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh------
Confidence 567999999999999999998874 6899999999953 112466778887764
Q ss_pred HhhcCCCCccEEeeCCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~ 131 (179)
+..+++|+++-+-+-..
T Consensus 106 ---l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 106 ---LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ---hccCCccEEEECCCcCc
Confidence 23479999999876433
No 190
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0018 Score=58.35 Aligned_cols=73 Identities=29% Similarity=0.513 Sum_probs=56.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.++++|+||=||-|.|+..++++. .+|+|+|+++-. .+.|++|+.+|.++....
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~---------------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRV---------------KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccC---------------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 577899999999999999999764 689999999941 367899999998875421
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
...+..+|+|+.|.+ -+|.
T Consensus 357 -----~~~~~~~d~VvvDPP--R~G~ 375 (432)
T COG2265 357 -----WWEGYKPDVVVVDPP--RAGA 375 (432)
T ss_pred -----ccccCCCCEEEECCC--CCCC
Confidence 112347899999953 4454
No 191
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.84 E-value=0.0017 Score=53.42 Aligned_cols=68 Identities=24% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C------------CCCe
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P------------IEGV 95 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~------------~~~v 95 (179)
..++.+||..|||.|--..+|+++ +..|+|+|+++.. + ..+|
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~---------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ---------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT---------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC---------------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 367789999999999999999986 3689999999841 0 1257
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
++.+||+++.... ..++||+|.=-++
T Consensus 100 ~~~~gDfF~l~~~-------~~g~fD~iyDr~~ 125 (218)
T PF05724_consen 100 TIYCGDFFELPPE-------DVGKFDLIYDRTF 125 (218)
T ss_dssp EEEES-TTTGGGS-------CHHSEEEEEECSS
T ss_pred EEEEcccccCChh-------hcCCceEEEEecc
Confidence 8889999996531 1137999875544
No 192
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.82 E-value=0.0041 Score=50.85 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=48.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--C-----C--C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--M-----A--P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~-----~--~-~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+.|+++|..-||-..+.+..+.. -+..++|+|+|+.. . + | .+++++++||-.++++..+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~---------~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLEL---------LGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHH---------TT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHH---------hCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHH
Confidence 3569999999999999988764421 01368999999942 1 1 1 2689999999999998777
Q ss_pred HHhhcCCCCccEEeeCCC
Q 030299 111 VIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~ 128 (179)
+..........+|+-|+.
T Consensus 103 v~~~~~~~~~vlVilDs~ 120 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSS 120 (206)
T ss_dssp SGSS----SSEEEEESS-
T ss_pred HHHhhccCCceEEEECCC
Confidence 665433445678888864
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.77 E-value=0.0029 Score=51.84 Aligned_cols=64 Identities=27% Similarity=0.350 Sum_probs=48.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.+..+|+|||+|.|.++..++++.| ..+++.+|+-... ..++|+++-||+++.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~--------- 155 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYP-------------NLRATVFDLPEVIEQAKEADRVEFVPGDFFDP--------- 155 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHST-------------TSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------
T ss_pred ccCccEEEeccCcchHHHHHHHHHCC-------------CCcceeeccHhhhhccccccccccccccHHhh---------
Confidence 46677999999999999999999976 5799999985431 257899999999953
Q ss_pred cCCCCccEEeeC
Q 030299 115 FDGCKADLVVCD 126 (179)
Q Consensus 115 ~~~~~~D~VlsD 126 (179)
++. +|+++.-
T Consensus 156 ~P~--~D~~~l~ 165 (241)
T PF00891_consen 156 LPV--ADVYLLR 165 (241)
T ss_dssp CSS--ESEEEEE
T ss_pred hcc--ccceeee
Confidence 443 8988873
No 194
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.77 E-value=0.0016 Score=57.02 Aligned_cols=75 Identities=25% Similarity=0.372 Sum_probs=44.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhh-H--
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNART-A-- 108 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~-~-- 108 (179)
..||||.||.|.+|..++... .+|+|||+.+.. .+.|++|+.++..+... .
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---------------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---------------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK 262 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---------------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred CcEEEEeecCCHHHHHHHhhC---------------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence 389999999999999998875 589999999831 46799999887754311 0
Q ss_pred -HHHHh----hcCCCCccEEeeCCCCCCCCC
Q 030299 109 -EVVIR----HFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 -~~l~~----~~~~~~~D~VlsD~~~~~~g~ 134 (179)
.++.. .+....+|+|+.|. +-+|.
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vilDP--PR~G~ 291 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVILDP--PRAGL 291 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE-----TT-S
T ss_pred hHHHHhhhhhhhhhcCCCEEEEcC--CCCCc
Confidence 00000 01223689999985 45554
No 195
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.73 E-value=0.0023 Score=52.16 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=50.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.+.|||+|+|..|.+++... -+|+|++..|.. ...|++.+.||..+-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---------------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---- 93 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---------------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---- 93 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---------------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----
Confidence 3689999999999999999873 589999999941 1347899999999865
Q ss_pred HHhhcCCCCccEEeeCC
Q 030299 111 VIRHFDGCKADLVVCDG 127 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~ 127 (179)
| ...|+|+|-|
T Consensus 94 ----f--e~ADvvicEm 104 (252)
T COG4076 94 ----F--ENADVVICEM 104 (252)
T ss_pred ----c--cccceeHHHH
Confidence 3 4689999987
No 196
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.72 E-value=0.003 Score=47.21 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=39.7
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~ 106 (179)
+|+|+||+.|.++.+++...+ .++|+++|++|.. ..+++.+++..+.+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-------------~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-------------EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-------------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCC
Confidence 489999999999999988754 4699999999831 2356888888887753
No 197
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.72 E-value=0.0014 Score=57.12 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=44.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---------------CCCeeEEe
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---------------IEGVIQVQ 99 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~---------------~~~v~~i~ 99 (179)
++.+|||||||-||=..-.... + -..++|+|++... . .....++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~-------------i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K-------------IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--------------SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchhHHHHHhc-C-------------CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 7899999999999976655443 2 3799999999831 0 12466778
Q ss_pred ccccchhhHHHHHhhcCC--CCccEEeeCCCC
Q 030299 100 GDITNARTAEVVIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~--~~~D~VlsD~~~ 129 (179)
+|.+... +...++. .+||+|-+=-+.
T Consensus 128 ~D~f~~~----l~~~~~~~~~~FDvVScQFal 155 (331)
T PF03291_consen 128 ADCFSES----LREKLPPRSRKFDVVSCQFAL 155 (331)
T ss_dssp STTCCSH----HHCTSSSTTS-EEEEEEES-G
T ss_pred cccccch----hhhhccccCCCcceeehHHHH
Confidence 8887644 3334443 489999875543
No 198
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.009 Score=51.05 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=65.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CC-----CCCeeEEeccccchhh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------AP-----IEGVIQVQGDITNART 107 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~-----~~~v~~i~gDi~~~~~ 107 (179)
.+||=||-|.|++++.+++..+ -.+++.||+.+. .+ .+.++.+.+|....-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-------------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v- 143 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-------------VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL- 143 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-------------cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH-
Confidence 5999999999999999988754 478999999983 01 267777888877642
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+..+ ++||+|+.|.....+=..+.....-.+.|..+|+
T Consensus 144 -----~~~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~ 181 (282)
T COG0421 144 -----RDCE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALK 181 (282)
T ss_pred -----HhCC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcC
Confidence 2233 4899999999866422255555566777777776
No 199
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0087 Score=48.27 Aligned_cols=75 Identities=23% Similarity=0.223 Sum_probs=54.5
Q ss_pred hCCCC----CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEe
Q 030299 36 FNIFE----GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQ 99 (179)
Q Consensus 36 ~~ll~----~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~ 99 (179)
|+++. .|.+||||.||+|.....++.|- ...++.||.+... ...++..+.
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--------------A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~ 99 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSRG--------------AARVVFVEKDRKAVKILKENLKALGLEGEARVLR 99 (187)
T ss_pred HHhccccccCCCEEEEecCCccHhHHHHHhCC--------------CceEEEEecCHHHHHHHHHHHHHhCCccceEEEe
Confidence 45554 47899999999999999998884 4789999999831 124677778
Q ss_pred ccccchhhHHHHHhhcCCC-CccEEeeCCCCC
Q 030299 100 GDITNARTAEVVIRHFDGC-KADLVVCDGAPD 130 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~~~-~~D~VlsD~~~~ 130 (179)
.|.+.. .+..... .||+|+.|.+..
T Consensus 100 ~da~~~------L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 100 NDALRA------LKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred ecHHHH------HHhcCCCCcccEEEeCCCCc
Confidence 887732 1222322 499999998765
No 200
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.58 E-value=0.0014 Score=57.06 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred cCCCCchHHHHHHhhCCcchh---hhcHHhHHHHhC--C----CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCC
Q 030299 5 SRDKRDIYYRKAKEEGWRARS---AFKLLQIDEEFN--I----FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSRE 75 (179)
Q Consensus 5 ~~~~~d~y~~~a~~~~~~sRa---a~KL~eid~~~~--l----l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~ 75 (179)
+...+++| ......|+-.|. .+.|-+++..-+ + .++++.++|||||-||=..-.-.. +
T Consensus 73 ~~~Va~HY-N~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA-g----------- 139 (389)
T KOG1975|consen 73 SSEVAEHY-NERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA-G----------- 139 (389)
T ss_pred hHHHHHHH-HHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh-c-----------
Confidence 44556676 555566664444 355655544322 2 378999999999999976544332 2
Q ss_pred CCCCeEEEEeCCCCC------------C-----CCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 76 GDLPLIVAIDLQPMA------------P-----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 76 ~~~~~VvavD~~~~~------------~-----~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
-+.+||+||.... . +-.+.|+.||-+.....+ +.+ +++.+||+|-|--++
T Consensus 140 --I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d-~~e-~~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 140 --IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD-LLE-FKDPRFDIVSCQFAF 206 (389)
T ss_pred --ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH-hcc-CCCCCcceeeeeeeE
Confidence 3689999999852 1 124779999988754322 222 245569998775443
No 201
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.55 E-value=0.011 Score=46.63 Aligned_cols=85 Identities=15% Similarity=0.051 Sum_probs=47.0
Q ss_pred hhhhcHHhHHHHh------CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------
Q 030299 24 RSAFKLLQIDEEF------NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------- 90 (179)
Q Consensus 24 Raa~KL~eid~~~------~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------- 90 (179)
.++.-|.+..... ....++.+|||||||.|--+..++...+ ...|+.-|..+..
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~-------------~~~Vv~TD~~~~l~~l~~Ni 88 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFG-------------AARVVLTDYNEVLELLRRNI 88 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T--------------SEEEEEE-S-HHHHHHHHH
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccC-------------CceEEEeccchhhHHHHHHH
Confidence 4555566554442 2345788999999999988888887643 4789999998831
Q ss_pred ------CCCCeeEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 91 ------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 91 ------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
....+.+...|..+... ... +..++||+|++
T Consensus 89 ~~N~~~~~~~v~v~~L~Wg~~~~-~~~---~~~~~~D~Ila 125 (173)
T PF10294_consen 89 ELNGSLLDGRVSVRPLDWGDELD-SDL---LEPHSFDVILA 125 (173)
T ss_dssp HTT--------EEEE--TTS-HH-HHH---HS-SSBSEEEE
T ss_pred HhccccccccccCcEEEecCccc-ccc---cccccCCEEEE
Confidence 11345555666655321 111 23468999986
No 202
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.0032 Score=55.83 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=60.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~ 108 (179)
.+|..|+|.||+||..|.+++.-+.+ .++|.|+|..+-. ....++.+.+|+....+.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n------------~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~ 279 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRN------------QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATP 279 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhc------------cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCc
Confidence 45789999999999999999998864 6999999999832 233455557888774321
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCCCcc
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGLHDM 137 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~~~~ 137 (179)
. .+ +.+..+++|.+|+.+|....
T Consensus 280 ~----~~--~~v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 280 E----KF--RDVTYILVDPSCSGSGMVSR 302 (413)
T ss_pred c----cc--cceeEEEeCCCCCCCccccc
Confidence 1 12 46899999999999998643
No 203
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.50 E-value=0.0031 Score=52.37 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=52.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C---C-CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P---I-EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~---~-~~v~~i~gDi~~~~~~ 108 (179)
....|+|.-||-||-+...+.+. +.|+++|+.|.+ . + ..|.|++||+.|.-.-
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---------------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~ 158 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---------------PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK 158 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---------------CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH
Confidence 34578999999999988887763 689999999952 1 1 3689999999986422
Q ss_pred HHHHhhcCCCCccEEeeCCCCCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~~~g~ 134 (179)
-+ +....+|+|+..+++...+-
T Consensus 159 lq----~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 159 LK----ADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred Hh----hhhheeeeeecCCCCCCcch
Confidence 11 22345888887766544443
No 204
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.39 E-value=0.004 Score=52.88 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C--CCCeeEEeccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P--IEGVIQVQGDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~--~~~v~~i~gDi~~~~ 106 (179)
.++.+|+|-|||+|+|...+.+++... ........++|+|+.+.. . ..+.....+|....+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~------~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEK------RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTC------HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhccc------ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc
Confidence 567799999999999998887754100 000014789999999831 1 122346678876654
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVT 132 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~ 132 (179)
.. .....||+|+++.++...
T Consensus 119 ~~------~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 119 KF------IKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp SC------TST--EEEEEEE--CTCE
T ss_pred cc------ccccccccccCCCCcccc
Confidence 21 114689999999876655
No 205
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.0043 Score=56.78 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=43.0
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccc
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITN 104 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~ 104 (179)
-+.++..++|+|||+|-++.-+++++ .+|+||+++|-+ .+.|++|++|-..+
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~---------------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGV---------------KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhccc---------------cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 35778899999999999999998875 589999999942 26789999995554
No 206
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.30 E-value=0.0039 Score=52.52 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=60.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~ 109 (179)
++||.+||=|||+.|.-..+....+++ .+.|+||+.++.. ..+|+.-|.-|.+-+.-..
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGp------------eG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGP------------EGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR 221 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCC------------CceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee
Confidence 589999999999999999999999875 7999999999853 2478888888988764321
Q ss_pred HHHhhcCCCCccEEeeCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.-.-+|+|++|.++
T Consensus 222 -----mlVgmVDvIFaDvaq 236 (317)
T KOG1596|consen 222 -----MLVGMVDVIFADVAQ 236 (317)
T ss_pred -----eeeeeEEEEeccCCC
Confidence 112369999999875
No 207
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.29 E-value=0.021 Score=47.11 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCC-CeeEEe-ccccchh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIE-GVIQVQ-GDITNAR 106 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~-~v~~i~-gDi~~~~ 106 (179)
.+..+||+||.+.|.-+.+++..++. +++++.+|++|.. ... .++.+. ||..+.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~------------~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~- 124 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPD------------DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV- 124 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCC------------CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-
Confidence 46789999999999999999999873 6899999999941 232 366666 455442
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+ +..++||+|+.|.+.
T Consensus 125 ----l~~-~~~~~fDliFIDadK 142 (219)
T COG4122 125 ----LSR-LLDGSFDLVFIDADK 142 (219)
T ss_pred ----HHh-ccCCCccEEEEeCCh
Confidence 222 335789999999864
No 208
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.28 E-value=0.011 Score=48.97 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=49.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
..+||||||-|.|...+|++.| +..++||++..- ..++|+..+++|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-------------~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l----- 111 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-------------EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVL----- 111 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-------------CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHH-----
Confidence 4799999999999999999976 679999999983 23569999999987742
Q ss_pred HhhcC-CCCccEEee
Q 030299 112 IRHFD-GCKADLVVC 125 (179)
Q Consensus 112 ~~~~~-~~~~D~Vls 125 (179)
..+. ++.+|-|..
T Consensus 112 -~~~~~~~sl~~I~i 125 (227)
T COG0220 112 -DYLIPDGSLDKIYI 125 (227)
T ss_pred -HhcCCCCCeeEEEE
Confidence 2333 336766654
No 209
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.26 E-value=0.014 Score=48.97 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=55.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~ 108 (179)
+..+||+||.+.|.-+.+++..+++ +++|+++|..+.. . ...|+++.||..+ ++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~------------~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e--~L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPE------------DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP--VL 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCC------------CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH--HH
Confidence 4569999999999999999988764 6899999999831 2 2468889998765 33
Q ss_pred HHHHhhc-CCCCccEEeeCCC
Q 030299 109 EVVIRHF-DGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~-~~~~~D~VlsD~~ 128 (179)
.++.... ..++||+|+.|+.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHhccccCCcccEEEecCC
Confidence 3333211 1258999999985
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.014 Score=49.93 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=57.9
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~ 106 (179)
++||.+|++-|.|.|+.|-+++..+++ .++++.+|.-... . ..+|.++.-|+...-
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~p------------tGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAP------------TGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCc------------CcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 389999999999999999999999986 6999999996631 1 357888888887753
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.. ..+..+|.|+.|+.
T Consensus 171 F~------~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 171 FL------IKSLKADAVFLDLP 186 (314)
T ss_pred cc------ccccccceEEEcCC
Confidence 21 12568999999995
No 211
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.17 E-value=0.005 Score=50.82 Aligned_cols=82 Identities=20% Similarity=0.139 Sum_probs=56.3
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CCCCee-EEeccccchhhHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PIEGVI-QVQGDITNARTAEVV 111 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~~~v~-~i~gDi~~~~~~~~l 111 (179)
.||++|||||--=.+.-+. +...|+++|.++ |+ .++++. |+.++..+.+-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--------------p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~---- 140 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--------------PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ---- 140 (252)
T ss_pred ceEEecccCCCCcccccCC--------------CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc----
Confidence 5799999999877766443 257999999998 31 256777 88999988752
Q ss_pred HhhcCCCCccEEeeCCC-CCCCCCCcccHHHHHHHHHHHHH
Q 030299 112 IRHFDGCKADLVVCDGA-PDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~-~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+++.++|+|++-.. |++ .|...+++-...-|+
T Consensus 141 ---l~d~s~DtVV~TlvLCSv-----e~~~k~L~e~~rlLR 173 (252)
T KOG4300|consen 141 ---LADGSYDTVVCTLVLCSV-----EDPVKQLNEVRRLLR 173 (252)
T ss_pred ---cccCCeeeEEEEEEEecc-----CCHHHHHHHHHHhcC
Confidence 46789999988653 222 233444555555444
No 212
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.11 E-value=0.012 Score=54.02 Aligned_cols=68 Identities=7% Similarity=0.020 Sum_probs=51.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~~~~ 109 (179)
.+..+||||||-|.|+..+|.+.+ +..++|+|+..- ..+.|+.++.+|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-------------~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~----- 408 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-------------DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL----- 408 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-------------CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-----
Confidence 467899999999999999999976 689999999973 236788877776433
Q ss_pred HHHhhcCCCCccEEeeCC
Q 030299 110 VVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~ 127 (179)
+...+++..+|.|...=
T Consensus 409 -~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 409 -ILNDLPNNSLDGIYILF 425 (506)
T ss_pred -HHHhcCcccccEEEEEC
Confidence 33446767788886643
No 213
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.03 E-value=0.019 Score=49.43 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=63.8
Q ss_pred CCcchhhhcHHhHHHHhCCCC---CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------
Q 030299 20 GWRARSAFKLLQIDEEFNIFE---GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------- 89 (179)
Q Consensus 20 ~~~sRaa~KL~eid~~~~ll~---~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------- 89 (179)
|.|.|-..-...|.+...-|. ..-+||||+||+|..-.-+....+. ..-.|.-.|.+|.
T Consensus 111 GIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~-----------~~~~i~LrDys~~Nv~~g~~ 179 (311)
T PF12147_consen 111 GIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPE-----------RPDSILLRDYSPINVEKGRA 179 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCC-----------CCceEEEEeCCHHHHHHHHH
Confidence 456666655555555444332 3458999999999987777776552 1257888999995
Q ss_pred ----CCCCCe-eEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 90 ----APIEGV-IQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 90 ----~~~~~v-~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
..+.++ +|.++|.+|.+....+ +..+++++..|-
T Consensus 180 li~~~gL~~i~~f~~~dAfd~~~l~~l-----~p~P~l~iVsGL 218 (311)
T PF12147_consen 180 LIAERGLEDIARFEQGDAFDRDSLAAL-----DPAPTLAIVSGL 218 (311)
T ss_pred HHHHcCCccceEEEecCCCCHhHhhcc-----CCCCCEEEEecc
Confidence 136676 8999999998764332 346799988764
No 214
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.022 Score=49.98 Aligned_cols=89 Identities=16% Similarity=0.063 Sum_probs=62.4
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC----------CCCCeeEEec-cccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA----------PIEGVIQVQG-DITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~----------~~~~v~~i~g-Di~~~~ 106 (179)
.++|+.|||==|||||+...+... +.+++|.|+.. |. .+++..+..+ |+++.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~---------------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM---------------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc---------------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 378999999999999999887654 47999999997 21 1244555655 888876
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcc-cHHHHHHHHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDM-DEFVQSQLILAVSIQF 153 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~-d~~~q~~L~~~AL~~~ 153 (179)
+++..||.|+.|.+ .|...- .-....+|+..+|..|
T Consensus 260 --------l~~~~vdaIatDPP---YGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 260 --------LRDNSVDAIATDPP---YGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred --------CCCCccceEEecCC---CCcccccccccHHHHHHHHHHHH
Confidence 45557999999975 344331 1122466777777644
No 215
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.99 E-value=0.023 Score=46.82 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
.++..|.|+|||-+..++-+ +. ...|..+|+....+ . ++.+||.+.+ ++++.
T Consensus 71 ~~~~viaD~GCGdA~la~~~----~~------------~~~V~SfDLva~n~--~--Vtacdia~vP--------L~~~s 122 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV----PN------------KHKVHSFDLVAPNP--R--VTACDIANVP--------LEDES 122 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH------S---------------EEEEESS-SST--T--EEES-TTS-S----------TT-
T ss_pred CCCEEEEECCCchHHHHHhc----cc------------CceEEEeeccCCCC--C--EEEecCccCc--------CCCCc
Confidence 34679999999999877443 31 35799999988653 3 5689998876 46789
Q ss_pred ccEEeeCCC
Q 030299 120 ADLVVCDGA 128 (179)
Q Consensus 120 ~D~VlsD~~ 128 (179)
+|+++...+
T Consensus 123 vDv~VfcLS 131 (219)
T PF05148_consen 123 VDVAVFCLS 131 (219)
T ss_dssp EEEEEEES-
T ss_pred eeEEEEEhh
Confidence 999988664
No 216
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.75 E-value=0.017 Score=43.80 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.+..+|+|+|||-|..+..++..++.. .....|+|+|.++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---------~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNS---------SPNLRVLGIDCNES 64 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhc---------CCCCeEEEEECCcH
Confidence 567899999999999999999944210 12579999999983
No 217
>PLN02823 spermine synthase
Probab=95.71 E-value=0.036 Score=48.49 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------CC-------CCCeeEEeccccch
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------AP-------IEGVIQVQGDITNA 105 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------~~-------~~~v~~i~gDi~~~ 105 (179)
...+||.||+|.|+...++++..+ ..+|+.||+.+. .+ -++++.+.+|....
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-------------~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~ 169 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-------------VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE 169 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-------------CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH
Confidence 457999999999999998877533 368999999993 01 25788889998874
Q ss_pred hhHHHHHhhcCCCCccEEeeCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
- +. .+++||+|+.|..
T Consensus 170 L------~~-~~~~yDvIi~D~~ 185 (336)
T PLN02823 170 L------EK-RDEKFDVIIGDLA 185 (336)
T ss_pred H------hh-CCCCccEEEecCC
Confidence 2 11 2468999999974
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.70 E-value=0.039 Score=45.95 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~ 108 (179)
...++||||.=+|.-+...+..++. +++|+++|+.+-. . -..+++++|+..+ .+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~------------dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e--sL 138 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPE------------DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE--SL 138 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCC------------CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh--hH
Confidence 4569999999999999888888875 8999999999831 1 2357788887654 55
Q ss_pred HHHHhhcCCCCccEEeeCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~ 128 (179)
.++.+..+...||.++.|..
T Consensus 139 d~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 139 DELLADGESGTFDFAFVDAD 158 (237)
T ss_pred HHHHhcCCCCceeEEEEccc
Confidence 66777666778999999963
No 219
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.69 E-value=0.0066 Score=50.86 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred hcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 27 ~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.+|.|+..+.+. .+=+++||||||||-..+-+..+. -++.|||+|.
T Consensus 112 ~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a---------------~~ltGvDiS~ 157 (287)
T COG4976 112 ELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA---------------DRLTGVDISE 157 (287)
T ss_pred HHHHHHHHhccC-CccceeeecccCcCcccHhHHHHH---------------hhccCCchhH
Confidence 344444444332 233789999999999999998875 4799999998
No 220
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.65 E-value=0.1 Score=45.42 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=64.5
Q ss_pred CcchhhhcHHhH--HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------
Q 030299 21 WRARSAFKLLQI--DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------- 89 (179)
Q Consensus 21 ~~sRaa~KL~ei--d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------- 89 (179)
|+.|.-..|++- .+.-..+.++..++|||||.|..+..|++.+... ......+++|+|.-
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~---------~~~~~Y~plDIS~~~L~~a~~~L 124 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQ---------KKSVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhc---------CCCceEEEEECCHHHHHHHHHhh
Confidence 566666666542 2333446778899999999999999998877420 11357999999972
Q ss_pred --CCCCCeeE--EeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCccc
Q 030299 90 --APIEGVIQ--VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 90 --~~~~~v~~--i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
..+|++.+ +.||.++... .+.+........+++.=|+ +-|+..++
T Consensus 125 ~~~~~p~l~v~~l~gdy~~~l~--~l~~~~~~~~~r~~~flGS--siGNf~~~ 173 (319)
T TIGR03439 125 PLGNFSHVRCAGLLGTYDDGLA--WLKRPENRSRPTTILWLGS--SIGNFSRP 173 (319)
T ss_pred hhccCCCeEEEEEEecHHHHHh--hcccccccCCccEEEEeCc--cccCCCHH
Confidence 13466655 7899988531 0111001123577777663 34444444
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.63 E-value=0.044 Score=47.50 Aligned_cols=85 Identities=21% Similarity=0.207 Sum_probs=54.0
Q ss_pred HhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEe
Q 030299 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQ 99 (179)
Q Consensus 30 ~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~ 99 (179)
.|+.+-+. .+++..++|.=.|-||.|..++++.+ .++|+|+|..|.. + -.++.+++
T Consensus 10 ~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-------------~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~ 75 (310)
T PF01795_consen 10 KEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-------------NGRLIGIDRDPEALERAKERLKKFDDRFIFIH 75 (310)
T ss_dssp HHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-------------T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEE
T ss_pred HHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-------------CCeEEEecCCHHHHHHHHHHHhhccceEEEEe
Confidence 34444444 36778999999999999999999986 4899999999841 1 24799999
Q ss_pred ccccchhhHHHHHhhc-CCCCccEEeeCCCCCC
Q 030299 100 GDITNARTAEVVIRHF-DGCKADLVVCDGAPDV 131 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~-~~~~~D~VlsD~~~~~ 131 (179)
+++.+... ..... ...++|-|+.|.+.+.
T Consensus 76 ~~F~~l~~---~l~~~~~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 76 GNFSNLDE---YLKELNGINKVDGILFDLGVSS 105 (310)
T ss_dssp S-GGGHHH---HHHHTTTTS-EEEEEEE-S--H
T ss_pred ccHHHHHH---HHHHccCCCccCEEEEccccCH
Confidence 99888653 22223 3458999999986554
No 222
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.54 E-value=0.016 Score=50.82 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=54.5
Q ss_pred CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCC-eeEEeccccch
Q 030299 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEG-VIQVQGDITNA 105 (179)
Q Consensus 38 ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~-v~~i~gDi~~~ 105 (179)
...+|.+|+|+=||-|-||..++.... ..|+|+|++|-. ...+ ++.++||.+..
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~--------------~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev 250 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGR--------------PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV 250 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCC--------------ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence 346799999999999999999988743 459999999942 2345 88899999886
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
... + +.+|.|+.....
T Consensus 251 ~~~------~--~~aDrIim~~p~ 266 (341)
T COG2520 251 APE------L--GVADRIIMGLPK 266 (341)
T ss_pred hhc------c--ccCCEEEeCCCC
Confidence 421 1 579999987754
No 223
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.48 E-value=0.017 Score=48.91 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
..++||||||-|+.|..++... .+|.|.+.|+
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f---------------~~v~aTE~S~ 126 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF---------------KEVYATEASP 126 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc---------------ceEEeecCCH
Confidence 4579999999999999998876 4699999998
No 224
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.28 E-value=0.021 Score=47.96 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=48.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+||++|||-|.-.--+.+..+. +.-.|.|+|.+|-+ ....+.....|++..+ +..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n-----------~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~----~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN-----------NRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPS----LKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCC-----------CCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchh----ccC
Confidence 8999999999998888887652 24789999999942 1234555567777765 333
Q ss_pred hcCCCCccEEee
Q 030299 114 HFDGCKADLVVC 125 (179)
Q Consensus 114 ~~~~~~~D~Vls 125 (179)
....+.+|.|.+
T Consensus 139 ~~~~~svD~it~ 150 (264)
T KOG2361|consen 139 PPEEGSVDIITL 150 (264)
T ss_pred CCCcCccceEEE
Confidence 455678888754
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.19 E-value=0.036 Score=49.15 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=49.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
-+|||+.||+|..+..++.+.+. ...|+++|++|.. ...+++++++|....-.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~g------------a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---- 109 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEG------------VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---- 109 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCC------------CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH----
Confidence 58999999999999999887521 3689999999942 23467788888776421
Q ss_pred HhhcCCCCccEEeeCC
Q 030299 112 IRHFDGCKADLVVCDG 127 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~ 127 (179)
.. ..+||+|..|.
T Consensus 110 --~~-~~~fDvIdlDP 122 (374)
T TIGR00308 110 --YR-NRKFHVIDIDP 122 (374)
T ss_pred --Hh-CCCCCEEEeCC
Confidence 11 24799999987
No 226
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.12 E-value=0.0087 Score=42.70 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=24.5
Q ss_pred EEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---C-------C-CCCeeEEeccccchhhHHHHHhh
Q 030299 46 VDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A-------P-IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 46 lDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---~-------~-~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
|++|+..|..|.++++.+... ..++++++|..+. . . ..+++++++|..+. ..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~----------~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--l~~---- 64 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN----------GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF--LPS---- 64 (106)
T ss_dssp ------------------------------------EEEESS------------GGG-BTEEEEES-THHH--HHH----
T ss_pred Ccccccccccccccccccccc----------ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH--HHH----
Confidence 689999999999998876531 1248999999992 1 1 24688999998653 222
Q ss_pred cCCCCccEEeeCCC
Q 030299 115 FDGCKADLVVCDGA 128 (179)
Q Consensus 115 ~~~~~~D~VlsD~~ 128 (179)
+..+++|+++.|+.
T Consensus 65 ~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 65 LPDGPIDLIFIDGD 78 (106)
T ss_dssp HHH--EEEEEEES-
T ss_pred cCCCCEEEEEECCC
Confidence 23468999999985
No 227
>PRK10742 putative methyltransferase; Provisional
Probab=95.07 E-value=0.059 Score=45.37 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=51.2
Q ss_pred CCCC--EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C----------C-CCeeE
Q 030299 40 EGVK--RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P----------I-EGVIQ 97 (179)
Q Consensus 40 ~~g~--~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~----------~-~~v~~ 97 (179)
++|. +|||+-||.|.-+..++.+ ++.|+++|-+|.. . + .+++.
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~---------------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASV---------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHc---------------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 5666 8999999999999999987 3679999999941 1 1 24556
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+++|..+.- +... ..||+|..|..+..
T Consensus 150 ~~~da~~~L------~~~~-~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTAL------TDIT-PRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHH------hhCC-CCCcEEEECCCCCC
Confidence 666665532 2233 37999999997655
No 228
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=94.98 E-value=0.084 Score=42.32 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=49.4
Q ss_pred CCCCC-EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchh
Q 030299 39 FEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~-~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~ 106 (179)
+.... +++|+|+|.|-=...++-..| +..|+-+|...-+ .++|++++.+.+.+..
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p-------------~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~ 111 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARP-------------DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE 111 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-T-------------TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT
T ss_pred hccCCceEEecCCCCCChhHHHHHhCC-------------CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc
Confidence 44433 899999999988888877765 6889999988732 4689999999998821
Q ss_pred hHHHHHhhcCCCCccEEeeCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
....||+|++-+-
T Consensus 112 ---------~~~~fd~v~aRAv 124 (184)
T PF02527_consen 112 ---------YRESFDVVTARAV 124 (184)
T ss_dssp ---------TTT-EEEEEEESS
T ss_pred ---------cCCCccEEEeehh
Confidence 3468999999763
No 229
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.94 E-value=0.16 Score=43.96 Aligned_cols=77 Identities=22% Similarity=0.209 Sum_probs=59.4
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHH
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~ 109 (179)
+++...+|.=-|-||.|+.++++.+. .++++|+|..|.. + -.++.++++++.+...
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~------------~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~-- 87 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPD------------LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAE-- 87 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCC------------CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHH--
Confidence 56789999999999999999999874 6889999999831 2 2479999998877543
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
.....+..+||-|+.|.+.+.
T Consensus 88 -~l~~~~i~~vDGiL~DLGVSS 108 (314)
T COG0275 88 -ALKELGIGKVDGILLDLGVSS 108 (314)
T ss_pred -HHHhcCCCceeEEEEeccCCc
Confidence 222334468999999986544
No 230
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.91 E-value=0.13 Score=43.40 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CC---CCeeE
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI---EGVIQ 97 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~---~~v~~ 97 (179)
|++..++.+++++...++|+|||.|..|.++++..... ..+...++.||-.... .. +.++-
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--------~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R 77 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--------KPSNSRFVLIDRASNRHKADNKIRKDESEPKFER 77 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--------ccCCccEEEEecCcccccchhhhhccCCCCceEE
Confidence 67777888999999999999999999999999987420 1124678888886531 01 34677
Q ss_pred Eeccccchh
Q 030299 98 VQGDITNAR 106 (179)
Q Consensus 98 i~gDi~~~~ 106 (179)
++.||.|..
T Consensus 78 ~riDI~dl~ 86 (259)
T PF05206_consen 78 LRIDIKDLD 86 (259)
T ss_pred EEEEeeccc
Confidence 788888875
No 231
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=0.11 Score=42.72 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+++|||+|+|-=...++-..+ +..|+=+|...-+ .++|++++++.+.+...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-------------~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~--- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-------------DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ--- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-------------CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---
Confidence 58999999999988888774444 5678889987732 47899999999988642
Q ss_pred HHhhcCCCC-ccEEeeCCC
Q 030299 111 VIRHFDGCK-ADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~~~-~D~VlsD~~ 128 (179)
+.+ ||+|+|-+-
T Consensus 132 ------~~~~~D~vtsRAv 144 (215)
T COG0357 132 ------EKKQYDVVTSRAV 144 (215)
T ss_pred ------ccccCcEEEeehc
Confidence 223 999999763
No 232
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.80 E-value=0.076 Score=44.28 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=68.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.+..+||=||.|.|+.+..+.+.-+ ...|+.||+.|.- .-++++.+.+|...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~-------------~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~ 141 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP-------------VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRK 141 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--------------SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHH
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC-------------cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHH
Confidence 3578999999999999998876432 3689999999941 13578889999877
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHHH---H------------HHHHHHHHHHHhhceE
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSIQ---F------------FIYELVFCLRQLLQYV 169 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~~---~------------~~~~~~~~~~~~f~~v 169 (179)
.- +...+++||+|+.|..-+.+-....=...-.+++...|+- + .+..+.=.|++.|..|
T Consensus 142 ~l------~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 142 FL------KETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQV 215 (246)
T ss_dssp HH------HTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEE
T ss_pred HH------HhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCce
Confidence 42 2223238999999986433222221122334555555541 0 1223334567788866
Q ss_pred EE
Q 030299 170 IL 171 (179)
Q Consensus 170 ~~ 171 (179)
..
T Consensus 216 ~~ 217 (246)
T PF01564_consen 216 KP 217 (246)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 233
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.63 E-value=0.061 Score=45.53 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 29 L~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
|.|+..+..-++ ..+|||+|||||.-+-.+.+.++. ...++++|.++
T Consensus 22 l~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~------------~~~~~~vd~s~ 68 (274)
T PF09243_consen 22 LSELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPS------------LKEYTCVDRSP 68 (274)
T ss_pred HHHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcC------------ceeeeeecCCH
Confidence 345544432223 458999999999876655555542 46799999998
No 234
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.55 E-value=0.073 Score=45.44 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
...|.|+|||-+-.++ .. ...|+++|+.+..+ .++.+||++.+ +.++++|
T Consensus 181 ~~vIaD~GCGEakiA~----~~--------------~~kV~SfDL~a~~~----~V~~cDm~~vP--------l~d~svD 230 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS----SE--------------RHKVHSFDLVAVNE----RVIACDMRNVP--------LEDESVD 230 (325)
T ss_pred ceEEEecccchhhhhh----cc--------------ccceeeeeeecCCC----ceeeccccCCc--------CccCccc
Confidence 4578999999987655 22 36799999987543 35689999976 5678999
Q ss_pred EEeeCCC
Q 030299 122 LVVCDGA 128 (179)
Q Consensus 122 ~VlsD~~ 128 (179)
+++...+
T Consensus 231 vaV~CLS 237 (325)
T KOG3045|consen 231 VAVFCLS 237 (325)
T ss_pred EEEeeHh
Confidence 9987654
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.51 E-value=0.07 Score=43.65 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=41.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C------CC--CeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P------IE--GVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~------~~--~v~~i~gDi~~~~~~~~ 110 (179)
.|.+|||+|+|+|--+...+... ...|++.|+-|.. . .. ++.++..|+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--------------A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g------ 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--------------AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG------ 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--------------hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC------
Confidence 47899999999998887776653 3689999998831 1 12 34445555544
Q ss_pred HHhhcCCCCccEEee
Q 030299 111 VIRHFDGCKADLVVC 125 (179)
Q Consensus 111 l~~~~~~~~~D~Vls 125 (179)
.+..+|+|+.
T Consensus 139 -----~~~~~Dl~La 148 (218)
T COG3897 139 -----SPPAFDLLLA 148 (218)
T ss_pred -----CCcceeEEEe
Confidence 2357999886
No 236
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.42 E-value=0.23 Score=47.45 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=54.5
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhC---CCC-C-CCC-C--------------------CC---CCCCCeEEEEeCC
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLY---LPA-K-LSP-D--------------------SR---EGDLPLIVAIDLQ 87 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~---~~~-~-~~~-~--------------------~~---~~~~~~VvavD~~ 87 (179)
+..+++..++|-+||.|.+...++.... +.. . .++ . .+ .....+|+|+|++
T Consensus 186 ~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did 265 (702)
T PRK11783 186 GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDID 265 (702)
T ss_pred CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECC
Confidence 3335688999999999999988876532 110 0 011 0 00 0123479999999
Q ss_pred CCC-----------CCC-CeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 88 PMA-----------PIE-GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 88 ~~~-----------~~~-~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+.. .+. .+.+.++|+++.... ...+.+|+|++|.+
T Consensus 266 ~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~------~~~~~~d~IvtNPP 312 (702)
T PRK11783 266 PRVIQAARKNARRAGVAELITFEVKDVADLKNP------LPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEeCChhhcccc------cccCCCCEEEECCC
Confidence 831 233 377889999886421 12246999999954
No 237
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.39 E-value=0.043 Score=46.15 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC-CC------CCCCeeE--Eecccc
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP-MA------PIEGVIQ--VQGDIT 103 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~-~~------~~~~v~~--i~gDi~ 103 (179)
|+.|++-+.-..++||||+-|..+.++..+. -.+++-+|.+- |. .-|+++. ..+|=.
T Consensus 64 DrvfD~kk~fp~a~diGcs~G~v~rhl~~e~--------------vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE 129 (325)
T KOG2940|consen 64 DRVFDCKKSFPTAFDIGCSLGAVKRHLRGEG--------------VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEE 129 (325)
T ss_pred HHHHHHhhhCcceeecccchhhhhHHHHhcc--------------hhheeeeecchHHHHHhhccCCCceEEEEEecchh
Confidence 3445544455689999999999999987653 36899999986 31 1244433 345533
Q ss_pred chhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 104 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 104 ~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
..+ |.+.++|+|++.++ -+|..|-..+..-|..+|+
T Consensus 130 ~Ld--------f~ens~DLiisSls----lHW~NdLPg~m~~ck~~lK 165 (325)
T KOG2940|consen 130 FLD--------FKENSVDLIISSLS----LHWTNDLPGSMIQCKLALK 165 (325)
T ss_pred ccc--------ccccchhhhhhhhh----hhhhccCchHHHHHHHhcC
Confidence 332 56789999999764 5887775555555544443
No 238
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.16 E-value=0.075 Score=44.89 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=47.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+|+||.||.||.+.-+.+. + --.|.++|+.+.. ..++. .+.+||.+....+ + .
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-------------~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~-----~-~ 60 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-------------FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKD-----F-I 60 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-------------CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhh-----c-C
Confidence 6999999999999888654 3 2468999999842 23333 6789998865321 1 2
Q ss_pred CCccEEeeCCCCC
Q 030299 118 CKADLVVCDGAPD 130 (179)
Q Consensus 118 ~~~D~VlsD~~~~ 130 (179)
..+|+|+.+-+|.
T Consensus 61 ~~~D~l~~gpPCq 73 (275)
T cd00315 61 PDIDLLTGGFPCQ 73 (275)
T ss_pred CCCCEEEeCCCCh
Confidence 4699999887654
No 239
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.87 E-value=0.068 Score=45.13 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=35.8
Q ss_pred HHHHhCCCC----CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 32 IDEEFNIFE----GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 32 id~~~~ll~----~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.|.+...|+ .+..+||+||-.|-.|..+++.+++ ..|+|+||.+
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-------------r~iLGvDID~ 92 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-------------RRILGVDIDP 92 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhcc-------------ceeeEeeccH
Confidence 345555553 3568999999999999999999974 5799999998
No 240
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.19 Score=41.60 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=51.5
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------------CCCCe
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------------PIEGV 95 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------------~~~~v 95 (179)
..|+||..+||+|.|+|..|..++..++.+ ...++|||.-|.- ....+
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~-----------g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGAT-----------GGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCC-----------CccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 457899999999999999999999888742 3334899887720 01356
Q ss_pred eEEeccccchhhHHHHHhhcCCCCccEEeeCC
Q 030299 96 IQVQGDITNARTAEVVIRHFDGCKADLVVCDG 127 (179)
Q Consensus 96 ~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~ 127 (179)
.++.||...... ...+||.|.+-+
T Consensus 147 ~ivvGDgr~g~~--------e~a~YDaIhvGA 170 (237)
T KOG1661|consen 147 SIVVGDGRKGYA--------EQAPYDAIHVGA 170 (237)
T ss_pred EEEeCCccccCC--------ccCCcceEEEcc
Confidence 677788776542 245789887753
No 241
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.98 E-value=0.19 Score=37.74 Aligned_cols=65 Identities=25% Similarity=0.203 Sum_probs=45.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
++| +|+++|.| -++.++. ++.. .+..|+++|+.+-....|+.++..|+|+++.. + -+.
T Consensus 13 ~~g-kVvEVGiG--~~~~VA~-~L~e-----------~g~dv~atDI~~~~a~~g~~~v~DDitnP~~~--i-----Y~~ 70 (129)
T COG1255 13 ARG-KVVEVGIG--FFLDVAK-RLAE-----------RGFDVLATDINEKTAPEGLRFVVDDITNPNIS--I-----YEG 70 (129)
T ss_pred cCC-cEEEEccc--hHHHHHH-HHHH-----------cCCcEEEEecccccCcccceEEEccCCCccHH--H-----hhC
Confidence 344 99999875 4555443 3321 14789999999975458999999999998631 1 135
Q ss_pred ccEEeeC
Q 030299 120 ADLVVCD 126 (179)
Q Consensus 120 ~D~VlsD 126 (179)
.|+|-|=
T Consensus 71 A~lIYSi 77 (129)
T COG1255 71 ADLIYSI 77 (129)
T ss_pred ccceeec
Confidence 7888774
No 242
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.90 E-value=1.7 Score=35.48 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--CCCCCeeEEeccccchhhHHHHHhhcC--C
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--APIEGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~~~~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
+.+|+=.|| +|+....+++++.. .+..|++++.++. .+..++.++++|+++.+..+++.+... -
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLAR-----------AGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHH-----------CCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 456777775 56677777666542 2568998887753 334688899999999876655554321 2
Q ss_pred CCccEEeeCCCCCCCC
Q 030299 118 CKADLVVCDGAPDVTG 133 (179)
Q Consensus 118 ~~~D~VlsD~~~~~~g 133 (179)
+.+|+|++..+....+
T Consensus 72 g~~d~li~~ag~~~~~ 87 (270)
T PRK06179 72 GRIDVLVNNAGVGLAG 87 (270)
T ss_pred CCCCEEEECCCCCCCc
Confidence 3689999988764433
No 243
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.69 E-value=1.7 Score=38.43 Aligned_cols=77 Identities=23% Similarity=0.169 Sum_probs=53.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~ 107 (179)
..+.+||=.| |+|..-..+++.+-. .+..|++++..+.. ..++++++++|+++.+.
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~-----------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 125 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVR-----------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADS 125 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHH
Confidence 3467898888 577777777666532 14688888876521 13578999999999887
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..++.+... .++|+|++..++
T Consensus 126 l~~~~~~~~-~~~D~Vi~~aa~ 146 (390)
T PLN02657 126 LRKVLFSEG-DPVDVVVSCLAS 146 (390)
T ss_pred HHHHHHHhC-CCCcEEEECCcc
Confidence 666654321 269999987654
No 244
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.56 E-value=0.23 Score=42.24 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=39.5
Q ss_pred CEEEEEccCC--ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCC--eeEEeccccchhhHH
Q 030299 43 KRVVDLCAAP--GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEG--VIQVQGDITNARTAE 109 (179)
Q Consensus 43 ~~VlDLgagp--Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~--v~~i~gDi~~~~~~~ 109 (179)
+.+||||||- -+.+-.++++..+ +++|+=||..|+. .-++ ..++++|+++++.+-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P------------~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAP------------DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-T------------T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCC------------CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh
Confidence 6899999993 2344455566653 7999999999951 2345 789999999987421
Q ss_pred ---HHHhhcC-CCCccEEeeCCC
Q 030299 110 ---VVIRHFD-GCKADLVVCDGA 128 (179)
Q Consensus 110 ---~l~~~~~-~~~~D~VlsD~~ 128 (179)
++...+. ++++-+++...-
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vL 160 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVL 160 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-G
T ss_pred cCHHHHhcCCCCCCeeeeeeeee
Confidence 2222222 567777777553
No 245
>PRK08177 short chain dehydrogenase; Provisional
Probab=91.89 E-value=1.1 Score=35.55 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
+|+=.|+ .|+....+++++.. .+..|++++.++.. ...++.+..+|+.+.+..+++.+.+.++
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-----------RGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-----------CCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 4555565 46666666665542 14689999988743 2346778899999998877777776656
Q ss_pred CccEEeeCCCC
Q 030299 119 KADLVVCDGAP 129 (179)
Q Consensus 119 ~~D~VlsD~~~ 129 (179)
.+|+|++..+.
T Consensus 71 ~id~vi~~ag~ 81 (225)
T PRK08177 71 RFDLLFVNAGI 81 (225)
T ss_pred CCCEEEEcCcc
Confidence 89999998654
No 246
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.82 E-value=0.092 Score=43.98 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=44.0
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+|+||.||-||++.-+.+. + --.|.|+|+.+.. ..+ ....+||++.... .++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-------------~~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-------------FEVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----DLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-------------EEEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----HHHH
T ss_pred cEEEEccCccHHHHHHHhc-C-------------cEEEEEeecCHHHHHhhhhccc--ccccccccccccc-----cccc
Confidence 7999999999999998665 2 2479999999853 233 7789999997643 2443
Q ss_pred CCccEEeeCCCC
Q 030299 118 CKADLVVCDGAP 129 (179)
Q Consensus 118 ~~~D~VlsD~~~ 129 (179)
.+|+++.--+|
T Consensus 61 -~~D~l~ggpPC 71 (335)
T PF00145_consen 61 -DVDLLIGGPPC 71 (335)
T ss_dssp -T-SEEEEE---
T ss_pred -cceEEEeccCC
Confidence 58988875543
No 247
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.27 E-value=0.44 Score=42.74 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=30.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
-+-+.|+|+|+|+|..++.++-.. +-.|.|||-+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y--------------~lsV~aIegsq 186 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGY--------------GLSVKAIEGSQ 186 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhcc--------------CceEEEeccch
Confidence 345789999999999999998765 37899999885
No 248
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.70 E-value=0.13 Score=42.47 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
.-.++|||||-||+..-++...+ +..|+|.+|.-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP-------------dtLiLGmEIR~ 94 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP-------------DTLILGMEIRD 94 (249)
T ss_pred cceEEeeccCccchhhhccccCc-------------cceeeeehhhH
Confidence 34689999999999999999886 68999999875
No 249
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.10 E-value=0.44 Score=32.73 Aligned_cols=47 Identities=28% Similarity=0.318 Sum_probs=31.2
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--CC---eeEEeccccc
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EG---VIQVQGDITN 104 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~--~~---v~~i~gDi~~ 104 (179)
++|+|||+|..+ .+.+..+. ...++++|+++.. .. .+ +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR------------GAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC------------CceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999988 55554331 1478999999731 01 11 4667777665
No 250
>PHA01634 hypothetical protein
Probab=89.05 E-value=0.71 Score=35.53 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=35.4
Q ss_pred hHHHHhCCCC-CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 31 QIDEEFNIFE-GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 31 eid~~~~ll~-~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
|....++.++ ++.+|+|+||+-|.-+.|++-+. ...|+|++.+|-
T Consensus 17 ey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~G--------------AK~Vva~E~~~k 62 (156)
T PHA01634 17 EYPHAYGMLNVYQRTIQIVGADCGSSALYFLLRG--------------ASFVVQYEKEEK 62 (156)
T ss_pred HHHHHhhheeecCCEEEEecCCccchhhHHhhcC--------------ccEEEEeccCHH
Confidence 3344455553 68899999999999999998763 368999999984
No 251
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=89.02 E-value=1.1 Score=34.05 Aligned_cols=65 Identities=23% Similarity=0.171 Sum_probs=33.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~ 120 (179)
+..+|+++|-|- ...++...... +..|+++|+.+.....|+.++..|++++.. ++. +..
T Consensus 13 ~~~kiVEVGiG~--~~~vA~~L~~~------------G~dV~~tDi~~~~a~~g~~~v~DDif~P~l--~iY-----~~a 71 (127)
T PF03686_consen 13 NYGKIVEVGIGF--NPEVAKKLKER------------GFDVIATDINPRKAPEGVNFVVDDIFNPNL--EIY-----EGA 71 (127)
T ss_dssp -SSEEEEET-TT----HHHHHHHHH------------S-EEEEE-SS-S----STTEE---SSS--H--HHH-----TTE
T ss_pred CCCcEEEECcCC--CHHHHHHHHHc------------CCcEEEEECcccccccCcceeeecccCCCH--HHh-----cCC
Confidence 344999998764 44443322210 378999999998544899999999999763 121 368
Q ss_pred cEEeeC
Q 030299 121 DLVVCD 126 (179)
Q Consensus 121 D~VlsD 126 (179)
|+|-|=
T Consensus 72 ~lIYSi 77 (127)
T PF03686_consen 72 DLIYSI 77 (127)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 888873
No 252
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.56 E-value=5 Score=33.47 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=48.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC------------CCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP------------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~------------~~~v~~i~gDi~~~~~~~ 109 (179)
+.+||=.|+ +|..-.++++++-. .+..|++++..+..+ .++++++.+|+++.+...
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 71 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQ-----------RGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFD 71 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHH-----------CCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHH
Confidence 567776665 67777777776642 145788777654210 136889999999977554
Q ss_pred HHHhhcCCCCccEEeeCCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
++.+ .+|.|++.+++..
T Consensus 72 ~~~~-----~~d~Vih~A~~~~ 88 (322)
T PLN02662 72 SVVD-----GCEGVFHTASPFY 88 (322)
T ss_pred HHHc-----CCCEEEEeCCccc
Confidence 4432 5899999887643
No 253
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=88.50 E-value=3.3 Score=34.05 Aligned_cols=64 Identities=14% Similarity=0.271 Sum_probs=48.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--CC----CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP--MA----PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~~----~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
..+.|++.|..-||-..+.+..+-. .+...+|+++|++- .. ..++|.|++|+-++++..+.+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s---------~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMIS---------IGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHh---------cCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 3458999999999999998876532 12357899988874 22 26899999999999987666554
No 254
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=88.38 E-value=0.61 Score=42.94 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=18.2
Q ss_pred CEEEEEccCCChHHHHHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRK 62 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~ 62 (179)
..+||+|||.|+|.-++.++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEEeccceeehhHHHHhhC
Confidence 46899999999999999887
No 255
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.85 E-value=2.4 Score=37.01 Aligned_cols=88 Identities=18% Similarity=0.054 Sum_probs=61.8
Q ss_pred hhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEec
Q 030299 25 SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQG 100 (179)
Q Consensus 25 aa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~g 100 (179)
.+|.|.++..+-.+++.+++||=.| |+|.....++..+.. .+..|+++|..+-.. ...+.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~IlVtG-gtGfIG~~l~~~L~~-----------~G~~V~~v~r~~~~~~~~~~~~~~~~~~ 71 (370)
T PLN02695 4 GAYTLAELEREPYWPSEKLRICITG-AGGFIASHIARRLKA-----------EGHYIIASDWKKNEHMSEDMFCHEFHLV 71 (370)
T ss_pred cccchhhcCCCCCCCCCCCEEEEEC-CccHHHHHHHHHHHh-----------CCCEEEEEEeccccccccccccceEEEC
Confidence 4788999988888888999998654 667777777776642 145899999653211 124678899
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
|+++.+....+. .++|+|++-++.
T Consensus 72 Dl~d~~~~~~~~-----~~~D~Vih~Aa~ 95 (370)
T PLN02695 72 DLRVMENCLKVT-----KGVDHVFNLAAD 95 (370)
T ss_pred CCCCHHHHHHHH-----hCCCEEEEcccc
Confidence 999876543332 258999988764
No 256
>PRK06398 aldose dehydrogenase; Validated
Probab=87.77 E-value=7.2 Score=31.74 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=49.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC--CCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD--GCK 119 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~--~~~ 119 (179)
|+++|=.|++.| .-..+++++.. .+.+|+.++.++.. ..++.++++|+++.+..+++.+... -+.
T Consensus 6 gk~vlItGas~g-IG~~ia~~l~~-----------~G~~Vi~~~r~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 6 DKVAIVTGGSQG-IGKAVVNRLKE-----------EGSNVINFDIKEPS-YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCEEEEECCCch-HHHHHHHHHHH-----------CCCeEEEEeCCccc-cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568888887655 44444444432 14689988876543 2468889999999876555554321 136
Q ss_pred ccEEeeCCCC
Q 030299 120 ADLVVCDGAP 129 (179)
Q Consensus 120 ~D~VlsD~~~ 129 (179)
+|+|+++.+.
T Consensus 73 id~li~~Ag~ 82 (258)
T PRK06398 73 IDILVNNAGI 82 (258)
T ss_pred CCEEEECCCC
Confidence 8999998764
No 257
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.72 E-value=2.7 Score=36.98 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCCCCEEEEEccCCChH-HHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEecccc--chhh-HHH
Q 030299 39 FEGVKRVVDLCAAPGSW-SQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDIT--NART-AEV 110 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~-s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~--~~~~-~~~ 110 (179)
+++|.+||=+||||=|. +...++.++ ..+|+.+|+.+.+ .--|++.+.-+-. +++. .+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-------------A~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~ 233 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-------------ASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAEL 233 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcC-------------CCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHH
Confidence 36799999999999666 555566676 5899999999852 1124433321111 2222 223
Q ss_pred HHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 111 VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+.+.+....+|+++. ++|. ..+.+..+.|++
T Consensus 234 v~~~~g~~~~d~~~d-----CsG~-----~~~~~aai~a~r 264 (354)
T KOG0024|consen 234 VEKALGKKQPDVTFD-----CSGA-----EVTIRAAIKATR 264 (354)
T ss_pred HHhhccccCCCeEEE-----ccCc-----hHHHHHHHHHhc
Confidence 333344355777664 4555 445555566655
No 258
>PRK06196 oxidoreductase; Provisional
Probab=87.58 E-value=7.4 Score=32.77 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=52.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
.+.+||=.|++ ||....+++++.. .+..|+.++.++-. .+.++.++++|+++.+..+++.+.
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~-----------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQ-----------AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHH
Confidence 45688888865 5566666665532 14688888876521 234588899999998876666554
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
+. ..++|+|+++.+.
T Consensus 93 ~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 FLDSGRRIDILINNAGV 109 (315)
T ss_pred HHhcCCCCCEEEECCCC
Confidence 32 1469999998864
No 259
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=86.91 E-value=2.6 Score=36.06 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=36.9
Q ss_pred CCCEEEEEccCCCh----HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGS----WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg----~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
-.++|+-||||.-- -|.+|.+-+|. +..++-.|+.+.-.-.+. .+.+|-.... .
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~------------~ailvDnDi~d~vSDa~~-~~~~Dc~t~~---------~ 118 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPE------------DAILVDNDIRDYVSDADQ-SIVGDCRTYM---------P 118 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-T------------T-EEEEEESS--B-SSSE-EEES-GGGEE---------E
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCC------------CcEEEecchhhhccccCC-ceeccccccC---------C
Confidence 36799999987432 25677666653 789999999986533344 5678877753 3
Q ss_pred CCCccEEeeCCC
Q 030299 117 GCKADLVVCDGA 128 (179)
Q Consensus 117 ~~~~D~VlsD~~ 128 (179)
+.++|+|+|||=
T Consensus 119 ~~k~DlIiSDmY 130 (299)
T PF06460_consen 119 PDKFDLIISDMY 130 (299)
T ss_dssp SS-EEEEEE---
T ss_pred CCcccEEEEecc
Confidence 468999999995
No 260
>PRK05993 short chain dehydrogenase; Provisional
Probab=86.57 E-value=5.5 Score=32.81 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=52.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C--CCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~--~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+.+||=.||+ |+....+++++.. .+..|++++.++.. . -.++.++.+|+++.+..+.+.+...
T Consensus 3 ~~k~vlItGas-ggiG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCS-SGIGAYCARALQS-----------DGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHH
Confidence 35678877874 6666666665532 24689999877532 1 1367889999999876555554331
Q ss_pred ---CCCccEEeeCCCCCCC
Q 030299 117 ---GCKADLVVCDGAPDVT 132 (179)
Q Consensus 117 ---~~~~D~VlsD~~~~~~ 132 (179)
.+.+|+|+++++....
T Consensus 71 ~~~~g~id~li~~Ag~~~~ 89 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQP 89 (277)
T ss_pred HHcCCCccEEEECCCcCCC
Confidence 2468999998754433
No 261
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=86.14 E-value=0.54 Score=41.65 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHhhCCcchhhhcHHhHHHHhCC-------CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC
Q 030299 15 KAKEEGWRARSAFKLLQIDEEFNI-------FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ 87 (179)
Q Consensus 15 ~a~~~~~~sRaa~KL~eid~~~~l-------l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~ 87 (179)
...+...+.|++.=-..+|+...+ .+||+-|.|==.|||++..-++. + ++.|+|-||.
T Consensus 175 li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~-F--------------Ga~viGtDID 239 (421)
T KOG2671|consen 175 LIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAH-F--------------GAYVIGTDID 239 (421)
T ss_pred HhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhh-h--------------cceeeccccc
Confidence 344556677777666666666554 37899999999999998776654 3 3799999998
Q ss_pred CC--C---C----------CCC-----eeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 88 PM--A---P----------IEG-----VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 88 ~~--~---~----------~~~-----v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
-+ . . -+| +..+.+|.+++... ....||.|+||.+
T Consensus 240 yr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r-------sn~~fDaIvcDPP 293 (421)
T KOG2671|consen 240 YRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR-------SNLKFDAIVCDPP 293 (421)
T ss_pred hheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh-------hcceeeEEEeCCC
Confidence 63 1 0 122 33567888887642 2457999999973
No 262
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=85.97 E-value=0.64 Score=42.67 Aligned_cols=82 Identities=12% Similarity=0.015 Sum_probs=47.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCC--CeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIE--GVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~--~v~~i~gDi~~~~~~~ 109 (179)
...+|+|.|||.|++...++++.... +. . .+....++|+|+.+.. ... +.....+|.......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~-~~---~-~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~- 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEI-NY---F-KEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLL- 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhc-CC---c-ccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccc-
Confidence 45689999999999999998876410 00 0 0113578999998842 111 233344443321100
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.... ..++||+|+++.+..
T Consensus 105 -~~~~-~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 105 -NIES-YLDLFDIVITNPPYG 123 (524)
T ss_pred -cccc-ccCcccEEEeCCCcc
Confidence 0000 124799999987543
No 263
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=85.77 E-value=1.1 Score=36.97 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
+++|++|+|+=-|-|.||+.++..+++ .+.|+++=..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp------------~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGP------------KGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCC------------ceeEEEecchh
Confidence 489999999999999999999999886 56777664444
No 264
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.66 E-value=2.8 Score=36.48 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCCCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHH
Q 030299 39 FEGVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 39 l~~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++++++||.+|||+ |..+..+++..+ ...|+++|.++.. ...++..+...-.+ ...+.+.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g-------------~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~-~~~~~l~ 247 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG-------------AERVIAIDRVPERLEMARSHLGAETINFEEVD-DVVEALR 247 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEcCCHHHHHHHHHcCCcEEEcCCcch-HHHHHHH
Confidence 46789999999887 777778888765 2469999988732 22244333221111 1333444
Q ss_pred hhcCCCCccEEeeC
Q 030299 113 RHFDGCKADLVVCD 126 (179)
Q Consensus 113 ~~~~~~~~D~VlsD 126 (179)
....++.+|+|+--
T Consensus 248 ~~~~~~~~D~vld~ 261 (386)
T cd08283 248 ELTGGRGPDVCIDA 261 (386)
T ss_pred HHcCCCCCCEEEEC
Confidence 44445579998764
No 265
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.58 E-value=0.84 Score=39.28 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=42.8
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
|+||.||.||++.-+.+. + --.|.|+|+.+.. ..++ ..+.+||.+.... .++
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-------------~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~-----~~~-- 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-------------FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPS-----DIP-- 58 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-------------CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhh-----hCC--
Confidence 689999999999888653 2 2346789998842 2444 5667899886531 122
Q ss_pred CccEEeeCCC
Q 030299 119 KADLVVCDGA 128 (179)
Q Consensus 119 ~~D~VlsD~~ 128 (179)
.+|+++.--+
T Consensus 59 ~~dvl~gg~P 68 (315)
T TIGR00675 59 DFDILLGGFP 68 (315)
T ss_pred CcCEEEecCC
Confidence 5899887544
No 266
>PRK06523 short chain dehydrogenase; Provisional
Probab=85.51 E-value=4.3 Score=32.72 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC-CCeeEEeccccchhhHHHHHhhcC--C
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI-EGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~-~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
++++||=.|++.| ....+++++.. .+..|++++.++-... .++.++++|+.+.+..+++.+... -
T Consensus 8 ~~k~vlItGas~g-IG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (260)
T PRK06523 8 AGKRALVTGGTKG-IGAATVARLLE-----------AGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERL 75 (260)
T ss_pred CCCEEEEECCCCc-hhHHHHHHHHH-----------CCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3678888887655 44554444431 1468999987754322 357789999999876555443321 1
Q ss_pred CCccEEeeCCC
Q 030299 118 CKADLVVCDGA 128 (179)
Q Consensus 118 ~~~D~VlsD~~ 128 (179)
+.+|.|++...
T Consensus 76 ~~id~vi~~ag 86 (260)
T PRK06523 76 GGVDILVHVLG 86 (260)
T ss_pred CCCCEEEECCc
Confidence 36899999875
No 267
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.18 E-value=5 Score=33.71 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=62.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC--CCCCC---CCeeEEeccccchhhHHHHHh-
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ--PMAPI---EGVIQVQGDITNARTAEVVIR- 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~--~~~~~---~~v~~i~gDi~~~~~~~~l~~- 113 (179)
.....||=.||+.||..-.++..+.. ++.+|+|.--+ +|..+ .|+....-|+++++...++..
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~-----------~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~e 73 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFAR-----------NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGE 73 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHh-----------CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHH
Confidence 34568999999999999988887753 36788887544 46433 378888999999876444443
Q ss_pred --hcCCCCccEEeeCCCCCCCCC
Q 030299 114 --HFDGCKADLVVCDGAPDVTGL 134 (179)
Q Consensus 114 --~~~~~~~D~VlsD~~~~~~g~ 134 (179)
.+++++.|+++.+...++++.
T Consensus 74 vr~~~~Gkld~L~NNAG~~C~~P 96 (289)
T KOG1209|consen 74 VRANPDGKLDLLYNNAGQSCTFP 96 (289)
T ss_pred HhhCCCCceEEEEcCCCCCcccc
Confidence 246788999999998777765
No 268
>PRK06953 short chain dehydrogenase; Provisional
Probab=84.38 E-value=5.6 Score=31.40 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=49.8
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C--CCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~--~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
++|=.|+ .|+....+++.+.. .+..|+.++.++.. . ..+++++++|+++.+..+++.+.+.+.+
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 70 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRA-----------DGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEA 70 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHh-----------CCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCC
Confidence 4554555 46666666665532 24688888877531 1 1356788999999988777765555557
Q ss_pred ccEEeeCCCC
Q 030299 120 ADLVVCDGAP 129 (179)
Q Consensus 120 ~D~VlsD~~~ 129 (179)
+|.|++....
T Consensus 71 ~d~vi~~ag~ 80 (222)
T PRK06953 71 LDAAVYVAGV 80 (222)
T ss_pred CCEEEECCCc
Confidence 9999997654
No 269
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=84.18 E-value=1.4 Score=35.84 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=35.6
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--C---------C-CCCeeEEeccccch
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A---------P-IEGVIQVQGDITNA 105 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~---------~-~~~v~~i~gDi~~~ 105 (179)
|+|+||=-|....+|.++.. ..+|+|+|+++- + . ...+++..||-.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-------------~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-------------APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-------------EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 68999999999999999854 468999999983 1 1 23588888886653
No 270
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.17 E-value=7.5 Score=34.77 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=64.6
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCC----CCCC-C---------------------CCCCCCCeEEEEeCCCC----
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPA----KLSP-D---------------------SREGDLPLIVAIDLQPM---- 89 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~----~~~~-~---------------------~~~~~~~~VvavD~~~~---- 89 (179)
+++..++|-=||.|.+...++.....-+ +.++ + ..+.+-..++|+|+.+-
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4567899999999999999887653211 1111 0 00111125789999983
Q ss_pred -------CCC-CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHH
Q 030299 90 -------API-EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVS 150 (179)
Q Consensus 90 -------~~~-~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL 150 (179)
... .-++|.++|+++.... + +.+|+|+||.+ .|.+--++.+...|+..-.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~--~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEP------L--EEYGVVISNPP---YGERLGSEALVAKLYREFG 327 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCC------C--CcCCEEEeCCC---cchhcCChhhHHHHHHHHH
Confidence 122 2478999999997531 1 57999999964 6777777755555665433
No 271
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=83.95 E-value=15 Score=31.34 Aligned_cols=74 Identities=22% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC---------CCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP---------IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~---------~~~v~~i~gDi~~~~~~~~l 111 (179)
.+++||=.| |+|....++++++-. .+..|+++|..+... ...+.++.+|+++.+...++
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLE-----------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKA 70 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHH-----------CCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHH
Confidence 356787777 455566666665532 146899998765321 12467889999998766555
Q ss_pred HhhcCCCCccEEeeCCCC
Q 030299 112 IRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~ 129 (179)
.+. .++|+|++-++.
T Consensus 71 ~~~---~~~d~vih~A~~ 85 (349)
T TIGR02622 71 IAE---FKPEIVFHLAAQ 85 (349)
T ss_pred Hhh---cCCCEEEECCcc
Confidence 442 358999998764
No 272
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=83.78 E-value=1.6 Score=35.71 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCCCC-EEEEEccCCChHHHHHHHHhCC
Q 030299 39 FEGVK-RVVDLCAAPGSWSQVLSRKLYL 65 (179)
Q Consensus 39 l~~g~-~VlDLgagpGg~s~~l~~~~~~ 65 (179)
+.+.. +||+||+|+|....+++..++.
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~ 49 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPH 49 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCC
Confidence 44444 5999999999999999999873
No 273
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.22 E-value=4.6 Score=32.93 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=52.3
Q ss_pred CCCEEEEEccCCC-hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpG-g~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++++|=.|++.| |.-..+++++.. .+..|+.+|.++.. ....+.++++|+++.+..++
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----------LGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----------cCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 4678999999973 777776666532 14677777776421 12345578999999887666
Q ss_pred HHhhcCC--CCccEEeeCCCC
Q 030299 111 VIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~--~~~D~VlsD~~~ 129 (179)
+.+...+ +.+|+++++...
T Consensus 78 ~~~~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 78 VFARIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHHHHcCCCCEEEEcCcc
Confidence 6554321 468999998764
No 274
>PRK07454 short chain dehydrogenase; Provisional
Probab=83.03 E-value=7.5 Score=30.93 Aligned_cols=77 Identities=9% Similarity=-0.064 Sum_probs=51.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
...++|=.|+ .|+....+++++.. .+.+|+.++.++.. ...++.++++|+++.+....
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK-----------AGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAP 72 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHH
Confidence 4567888885 67787777777642 24689999977531 01357788999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -++.|.|++....
T Consensus 73 ~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 444321 1358999987753
No 275
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.80 E-value=16 Score=29.47 Aligned_cols=77 Identities=12% Similarity=0.024 Sum_probs=50.8
Q ss_pred CCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------C---------C-CCCeeEEe
Q 030299 42 VKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------A---------P-IEGVIQVQ 99 (179)
Q Consensus 42 g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~---------~-~~~v~~i~ 99 (179)
+.+||=.|++. ||....+++++.. .+..|+.++.++. . . ...+.+++
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAA-----------KGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHME 73 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHH-----------cCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEE
Confidence 46788889874 6787777776642 1467888876621 0 0 12478889
Q ss_pred ccccchhhHHHHHhhcC--CCCccEEeeCCCC
Q 030299 100 GDITNARTAEVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 100 gDi~~~~~~~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+|+++.+....+.+... -+.+|.|++..+.
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 74 IDLSQPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 99999876555444332 1368999998754
No 276
>PRK08264 short chain dehydrogenase; Validated
Probab=82.52 E-value=22 Score=28.04 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCCCC---CCCeeEEeccccchhhHHHHHhhcC
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPMAP---IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~-~VvavD~~~~~~---~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+.+||=.|+ .|+....+++.+.. .+. .|+.++.++.+. ..++.++.+|+.+.+..+++.+.+
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~-----------~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~- 71 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLA-----------RGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAA- 71 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------CCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhc-
Confidence 3457777775 56566665555432 134 788888765321 246888999999988777777654
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
..+|.|++..+.
T Consensus 72 -~~id~vi~~ag~ 83 (238)
T PRK08264 72 -SDVTILVNNAGI 83 (238)
T ss_pred -CCCCEEEECCCc
Confidence 358999998865
No 277
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=82.21 E-value=2.4 Score=38.94 Aligned_cols=84 Identities=17% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCe----eEEeccccchhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGV----IQVQGDITNART 107 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v----~~i~gDi~~~~~ 107 (179)
.+.++|.|-+||+||+...+.+.++.. .....+.|.++.+.. -+.|+ ....+|-...+.
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~---------~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRH---------QDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhh---------ccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc
Confidence 567799999999999999888887521 003679999987721 12233 233444433221
Q ss_pred HHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
... ......||.|+++.+++..+..
T Consensus 256 ~~~---~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 256 HDD---KDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred ccc---cCCccceeEEEeCCCCCccccc
Confidence 110 1233679999999988754443
No 278
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=81.97 E-value=2.5 Score=34.97 Aligned_cols=94 Identities=18% Similarity=0.162 Sum_probs=53.6
Q ss_pred chHHHHHHhhCCcch---hhhcHHhHHHHhCCCCC----CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEE
Q 030299 10 DIYYRKAKEEGWRAR---SAFKLLQIDEEFNIFEG----VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIV 82 (179)
Q Consensus 10 d~y~~~a~~~~~~sR---aa~KL~eid~~~~ll~~----g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vv 82 (179)
+.|....+...-..| +.-.|.+-......-.+ .-++||+||=...- .....+ -..|+
T Consensus 13 ~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N---~~s~~~-------------~fdvt 76 (219)
T PF11968_consen 13 EAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDN---ACSTSG-------------WFDVT 76 (219)
T ss_pred HHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCC---cccccC-------------ceeeE
Confidence 445333333334556 55556554444332212 25899999973321 111223 25699
Q ss_pred EEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 83 AIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 83 avD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
+||+.+.. ++| .+.|+.+.+.. .-+++.||+|.+.+.
T Consensus 77 ~IDLns~~--~~I--~qqDFm~rplp-----~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 77 RIDLNSQH--PGI--LQQDFMERPLP-----KNESEKFDVISLSLV 113 (219)
T ss_pred EeecCCCC--CCc--eeeccccCCCC-----CCcccceeEEEEEEE
Confidence 99999954 444 58999886421 113568999988774
No 279
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=81.74 E-value=1.8 Score=36.59 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHhCCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 33 DEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 33 d~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++.|+.+.+.++|+|||||-==++....... ++..++|.|+..
T Consensus 97 ~~if~~~~~p~sVlDigCGlNPlalp~~~~~-------------~~a~Y~a~DID~ 139 (251)
T PF07091_consen 97 DEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-------------PGATYIAYDIDS 139 (251)
T ss_dssp HHHCCCS---SEEEEET-TTCHHHHHTTTSS-------------TT-EEEEEESBH
T ss_pred HHHHhcCCCCchhhhhhccCCceehhhcccC-------------CCcEEEEEeCCH
Confidence 3445666778999999999876666543322 256999999997
No 280
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.31 E-value=2.9 Score=36.16 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=45.5
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
.+++||.||-||++..+... + --.+.++|+.|.. ..+...++.+|+...... .+.
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-------------f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~-----~~~ 64 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-------------FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGE-----ALR 64 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-------------CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChh-----hcc
Confidence 47999999999999776543 2 2468899999953 233345677888865431 122
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
...+|+++.--+|
T Consensus 65 ~~~~DvligGpPC 77 (328)
T COG0270 65 KSDVDVLIGGPPC 77 (328)
T ss_pred ccCCCEEEeCCCC
Confidence 2278998875543
No 281
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=81.21 E-value=25 Score=30.39 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=53.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
|..|+=+|+|||....+|.+..... +..-+-+-+|..+.. .+++|+.++ +.++.+..+.+.+.+.
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~l---------g~~ikw~LiDp~~h~~~Le~l~nV~Li~-~f~de~~i~~~r~~~~- 129 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSL---------GVVIKWMLIDGRKHDPILNGLRDVTLVT-RFVDEAYLRRLKKQLH- 129 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhc---------CCCeEEEEECCCcccHhhcCCCcEEeeH-hhcCHHHHHHHHHhcc-
Confidence 6799999999999999998877520 012367778988863 466776554 4666666666655443
Q ss_pred CCccEE-eeCCCCCCCC
Q 030299 118 CKADLV-VCDGAPDVTG 133 (179)
Q Consensus 118 ~~~D~V-lsD~~~~~~g 133 (179)
+-|++ +||....-.|
T Consensus 130 -~~~illISDIRS~~~g 145 (300)
T PHA03108 130 -PSKIILISDIRSKRGG 145 (300)
T ss_pred -CCCEEEEEeecccCCC
Confidence 34655 6777654434
No 282
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=80.92 E-value=12 Score=31.45 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhhcCCCCccEE
Q 030299 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (179)
Q Consensus 51 gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~V 123 (179)
|.|-...++.+++-.. +....|.++|+.+.. .....+++++|+++.+...+.. .++|+|
T Consensus 5 gsGflG~~iv~~Ll~~---------g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~-----~g~d~V 70 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLER---------GYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEAL-----EGVDVV 70 (280)
T ss_pred CCcHHHHHHHHHHHHC---------CCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHh-----cCCceE
Confidence 6677777777766421 112578899988742 1233448999999987655543 368999
Q ss_pred eeCCCCCCC
Q 030299 124 VCDGAPDVT 132 (179)
Q Consensus 124 lsD~~~~~~ 132 (179)
++-.++...
T Consensus 71 ~H~Aa~~~~ 79 (280)
T PF01073_consen 71 FHTAAPVPP 79 (280)
T ss_pred EEeCccccc
Confidence 999876443
No 283
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=80.85 E-value=32 Score=28.76 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=47.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~ 108 (179)
.+++||=.| |+|+....+++++-. .+..|++++.++.. . ..++.++++|+++.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~ 71 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-----------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSF 71 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-----------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHH
Confidence 356788877 467777777766532 14577666544321 0 13578899999998765
Q ss_pred HHHHhhcCCCCccEEeeCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+++.+ .+|.|++..+.
T Consensus 72 ~~~~~-----~~d~vih~A~~ 87 (325)
T PLN02989 72 ELAID-----GCETVFHTASP 87 (325)
T ss_pred HHHHc-----CCCEEEEeCCC
Confidence 55442 47999998874
No 284
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.85 E-value=1.4 Score=31.44 Aligned_cols=63 Identities=29% Similarity=0.214 Sum_probs=43.8
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 50 agpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
||.|..+..+++.+.. ....|+.+|..+.. .-.++.++.||.++.++.++. .-..++.|++
T Consensus 4 ~G~g~~~~~i~~~L~~-----------~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a----~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-----------GGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERA----GIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHH-----------TTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHT----TGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHh-----------CCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhc----CccccCEEEE
Confidence 5777888888887753 12389999999842 235788999999999876543 2246888887
Q ss_pred CC
Q 030299 126 DG 127 (179)
Q Consensus 126 D~ 127 (179)
..
T Consensus 69 ~~ 70 (116)
T PF02254_consen 69 LT 70 (116)
T ss_dssp ES
T ss_pred cc
Confidence 64
No 285
>PRK00536 speE spermidine synthase; Provisional
Probab=80.78 E-value=5.7 Score=33.61 Aligned_cols=77 Identities=14% Similarity=0.120 Sum_probs=50.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C-------CCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-------IEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~-------~~~v~~i~gDi~~ 104 (179)
...++||=+|.|-||-.+.+++. + .+|+-||+.+.- | -|+++.+.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~--------------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~----- 130 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-D--------------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK----- 130 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-C--------------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----
Confidence 45689999999999988887764 2 389999998841 1 24454442
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
.+.+. ..++||+|+.|..++ .+ ..+.+..+|+
T Consensus 131 -----~~~~~-~~~~fDVIIvDs~~~-------~~--fy~~~~~~L~ 162 (262)
T PRK00536 131 -----QLLDL-DIKKYDLIICLQEPD-------IH--KIDGLKRMLK 162 (262)
T ss_pred -----hhhhc-cCCcCCEEEEcCCCC-------hH--HHHHHHHhcC
Confidence 11111 235899999997542 22 2355666665
No 286
>PRK06182 short chain dehydrogenase; Validated
Probab=80.75 E-value=11 Score=30.63 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=50.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC-
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD- 116 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~- 116 (179)
+.+|+=.|+ .|+....+++++.. .+..|++++.++.. ...++.++++|+++.+..+++.+...
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~-----------~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 70 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAA-----------QGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIA 70 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 456776675 55666666666532 14689988876531 12468889999999886655554321
Q ss_pred -CCCccEEeeCCCCCC
Q 030299 117 -GCKADLVVCDGAPDV 131 (179)
Q Consensus 117 -~~~~D~VlsD~~~~~ 131 (179)
..++|+|++..+...
T Consensus 71 ~~~~id~li~~ag~~~ 86 (273)
T PRK06182 71 EEGRIDVLVNNAGYGS 86 (273)
T ss_pred hcCCCCEEEECCCcCC
Confidence 236899999886543
No 287
>PRK07326 short chain dehydrogenase; Provisional
Probab=80.51 E-value=5 Score=31.72 Aligned_cols=79 Identities=6% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~---~~v~~i~gDi~~~~~~~~l 111 (179)
++.+||=.|+ .|+....+++++.. .+..|++++.++-. .+ .++.++++|+++.+...++
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~ 72 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLA-----------EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRA 72 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH-----------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHH
Confidence 3567888885 66676666665532 14689999876621 11 4678889999998765554
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... -+.+|.|++..++..
T Consensus 73 ~~~~~~~~~~~d~vi~~ag~~~ 94 (237)
T PRK07326 73 VDAIVAAFGGLDVLIANAGVGH 94 (237)
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 44321 136899998876543
No 288
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.02 E-value=25 Score=28.38 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
++.+||=.|++.| ....+++.+.. .+..|++++.++-. ...++.++++|+++.+..+++
T Consensus 4 ~~~~vlItG~s~~-iG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 71 (263)
T PRK09072 4 KDKRVLLTGASGG-IGQALAEALAA-----------AGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAV 71 (263)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 3567777787754 44444444321 24689999876521 123678889999998765555
Q ss_pred HhhcC-CCCccEEeeCCCCC
Q 030299 112 IRHFD-GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~-~~~~D~VlsD~~~~ 130 (179)
.+... -+.+|.|++..+..
T Consensus 72 ~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 72 LARAREMGGINVLINNAGVN 91 (263)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 44321 24689999987643
No 289
>PRK07856 short chain dehydrogenase; Provisional
Probab=79.97 E-value=25 Score=28.17 Aligned_cols=78 Identities=8% Similarity=0.027 Sum_probs=48.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCeeEEeccccchhhHHHHHhhcC--
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFD-- 116 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~~~~v~~i~gDi~~~~~~~~l~~~~~-- 116 (179)
.+.++|=.|++ |+....+++++.. .+..|+.++.++.. ...++.++++|+.+.+..+++.+...
T Consensus 5 ~~k~~lItGas-~gIG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 5 TGRVVLVTGGT-RGIGAGIARAFLA-----------AGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 35677766665 5555555555431 14678888876532 22367888999999876555544321
Q ss_pred CCCccEEeeCCCCC
Q 030299 117 GCKADLVVCDGAPD 130 (179)
Q Consensus 117 ~~~~D~VlsD~~~~ 130 (179)
-+.+|+|++..+..
T Consensus 73 ~~~id~vi~~ag~~ 86 (252)
T PRK07856 73 HGRLDVLVNNAGGS 86 (252)
T ss_pred cCCCCEEEECCCCC
Confidence 13689999987643
No 290
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=79.88 E-value=2.4 Score=36.38 Aligned_cols=39 Identities=15% Similarity=-0.040 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.+...|++|||||||+|--..++.... ...|..-|.+..
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~--------------~~~~~fqD~na~ 150 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKG--------------AVSVHFQDFNAE 150 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhc--------------cceeeeEecchh
Confidence 445679999999999999888886652 256777787764
No 291
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=79.63 E-value=16 Score=31.01 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----C------------CCCeeEEeccccchhhHHHHHhh
Q 030299 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----P------------IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 51 gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~------------~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
|+|..-.++++++.. .+.+|+++|..+.. . ..+++++++|++|.+...++.+.
T Consensus 8 atGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 76 (343)
T TIGR01472 8 ITGQDGSYLAEFLLE-----------KGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDE 76 (343)
T ss_pred CCCcHHHHHHHHHHH-----------CCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHh
Confidence 557777777776632 14689999876421 0 13588999999998766555543
Q ss_pred cCCCCccEEeeCCCCC
Q 030299 115 FDGCKADLVVCDGAPD 130 (179)
Q Consensus 115 ~~~~~~D~VlsD~~~~ 130 (179)
.++|+|++-++..
T Consensus 77 ---~~~d~ViH~Aa~~ 89 (343)
T TIGR01472 77 ---IKPTEIYNLAAQS 89 (343)
T ss_pred ---CCCCEEEECCccc
Confidence 3589999988753
No 292
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.61 E-value=15 Score=29.35 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=51.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCC--CeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIE--GVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~--~v~~i~gDi~~~~~~~~l~ 112 (179)
++.++|=.|++ |+....+++++-. ....|+.++.++-. ..+ .+.++.+|+++.+...++.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAE-----------AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVF 77 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHH
Confidence 55789988886 6666666665532 24679999876521 112 4578899999988655544
Q ss_pred hhcC--CCCccEEeeCCCCC
Q 030299 113 RHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~~ 130 (179)
+... -.++|.|++..+..
T Consensus 78 ~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHHHhCCCCEEEECCCCC
Confidence 3321 13699999987654
No 293
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=79.35 E-value=13 Score=30.10 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=48.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCeeEEeccccchhhHHHHHhhcC--CC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-~~~v~~i~gDi~~~~~~~~l~~~~~--~~ 118 (179)
++++|=.|++.| ....+++++.. .+..|+.+|.++... ..++.++++|+++.+..+++.+... -+
T Consensus 9 ~k~vlItG~s~g-IG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 76 (266)
T PRK06171 9 GKIIIVTGGSSG-IGLAIVKELLA-----------NGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFG 76 (266)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567777776655 44444444421 157899888876432 2467788999999876555544321 13
Q ss_pred CccEEeeCCCC
Q 030299 119 KADLVVCDGAP 129 (179)
Q Consensus 119 ~~D~VlsD~~~ 129 (179)
++|.|++..+.
T Consensus 77 ~id~li~~Ag~ 87 (266)
T PRK06171 77 RIDGLVNNAGI 87 (266)
T ss_pred CCCEEEECCcc
Confidence 68999998764
No 294
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.12 E-value=14 Score=33.23 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=52.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
++||=||| |+..+.+++.+..+ ....|+..|.++.+ ...++++.+.|+.+.+...++.+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~----------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~-- 67 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN----------GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK-- 67 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--
Confidence 46888999 88888888876431 23799999999742 13479999999999877666653
Q ss_pred CCCCccEEeeCCCCC
Q 030299 116 DGCKADLVVCDGAPD 130 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~ 130 (179)
.+|+|++-++|.
T Consensus 68 ---~~d~VIn~~p~~ 79 (389)
T COG1748 68 ---DFDLVINAAPPF 79 (389)
T ss_pred ---cCCEEEEeCCch
Confidence 359999987653
No 295
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.96 E-value=25 Score=28.83 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=50.6
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCC---CCeeEEeccccchhhHHHHHhhcCCCCc-
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPI---EGVIQVQGDITNARTAEVVIRHFDGCKA- 120 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~---~~v~~i~gDi~~~~~~~~l~~~~~~~~~- 120 (179)
||=.|+ +|-.-..+++++.. .+..|+++|.++.... .++.++.+|+++.+...+... .+
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~ 65 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLA-----------AGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAK-----GVP 65 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHh-----------CCCeEEEEeCCCccccccccccceeeecccchHHHHHHHh-----cCC
Confidence 666676 88888888888752 1479999998875421 378899999999765444332 23
Q ss_pred cEEeeCCCCCCCC
Q 030299 121 DLVVCDGAPDVTG 133 (179)
Q Consensus 121 D~VlsD~~~~~~g 133 (179)
|.|++.++.....
T Consensus 66 d~vih~aa~~~~~ 78 (314)
T COG0451 66 DAVIHLAAQSSVP 78 (314)
T ss_pred CEEEEccccCchh
Confidence 9999988754433
No 296
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.91 E-value=21 Score=28.73 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=48.3
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC--CCeeEEeccccchhhHHHHHhhc
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI--EGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~--~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
++|=.|++ |+....+++++.. ....|+.++.++.. .+ .++.++++|+++.+...++.+..
T Consensus 3 ~vlItGas-g~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 70 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAA-----------EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADF 70 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 56777766 5555555554432 14688888876531 11 35888999999987665554432
Q ss_pred C---CCCccEEeeCCCCCC
Q 030299 116 D---GCKADLVVCDGAPDV 131 (179)
Q Consensus 116 ~---~~~~D~VlsD~~~~~ 131 (179)
. .+++|.|++..+...
T Consensus 71 ~~~~~~~id~vi~~ag~~~ 89 (260)
T PRK08267 71 AAATGGRLDVLFNNAGILR 89 (260)
T ss_pred HHHcCCCCCEEEECCCCCC
Confidence 1 247899999876543
No 297
>PRK05693 short chain dehydrogenase; Provisional
Probab=78.86 E-value=21 Score=29.13 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=49.6
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcC--C
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFD--G 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~--~ 117 (179)
++|=.|| .|+....+++.+.. .+..|++++.++.. ...++.++++|+++.+..+++.+... .
T Consensus 3 ~vlItGa-sggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 70 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKA-----------AGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEH 70 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4565665 45666666665532 24689998876531 11367788999999876655554331 2
Q ss_pred CCccEEeeCCCCCCCC
Q 030299 118 CKADLVVCDGAPDVTG 133 (179)
Q Consensus 118 ~~~D~VlsD~~~~~~g 133 (179)
+++|.|++..+....+
T Consensus 71 ~~id~vi~~ag~~~~~ 86 (274)
T PRK05693 71 GGLDVLINNAGYGAMG 86 (274)
T ss_pred CCCCEEEECCCCCCCC
Confidence 4699999988754433
No 298
>PRK09186 flagellin modification protein A; Provisional
Probab=78.51 E-value=12 Score=29.83 Aligned_cols=77 Identities=21% Similarity=0.150 Sum_probs=49.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~ 108 (179)
++++||=.|++ |+....+++.+.. .+..|+.++.++.. +...+.++++|+++.+..
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~-----------~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~ 70 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILE-----------AGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESL 70 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHH
Confidence 45678877875 5566666666532 24688888876521 112456779999998766
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
.++.+... -.++|.|++...+
T Consensus 71 ~~~~~~~~~~~~~id~vi~~A~~ 93 (256)
T PRK09186 71 EEFLSKSAEKYGKIDGAVNCAYP 93 (256)
T ss_pred HHHHHHHHHHcCCccEEEECCcc
Confidence 55554321 1358999998743
No 299
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.26 E-value=19 Score=28.86 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=50.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.++|=.|++.| ....+++++.. .+..|+.++.++.. . ..++.++++|+++.+..++
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVE-----------AGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 4678888887655 45555554432 14688888876521 0 1356788999999876655
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|.++++.+..
T Consensus 76 ~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 76 MLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 554321 13699999987643
No 300
>PRK06483 dihydromonapterin reductase; Provisional
Probab=78.02 E-value=29 Score=27.39 Aligned_cols=75 Identities=9% Similarity=0.054 Sum_probs=48.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCeeEEeccccchhhHHHHHhhcCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+++|=.|++.| ....+++++.. .+..|+.++.++... ..++.++.+|+++.+..+++.+....
T Consensus 3 k~vlItGas~g-IG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 3 APILITGAGQR-IGLALAWHLLA-----------QGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred ceEEEECCCCh-HHHHHHHHHHH-----------CCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHh
Confidence 46777777755 55555555432 146888888776321 13577889999998766555544321
Q ss_pred --CCccEEeeCCCC
Q 030299 118 --CKADLVVCDGAP 129 (179)
Q Consensus 118 --~~~D~VlsD~~~ 129 (179)
+++|.+++..+.
T Consensus 71 ~~~~id~lv~~ag~ 84 (236)
T PRK06483 71 HTDGLRAIIHNASD 84 (236)
T ss_pred hCCCccEEEECCcc
Confidence 368999998753
No 301
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=77.90 E-value=38 Score=28.71 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=47.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.+||=.|+ +|+....+++++-.. +....|+++|..+.. ...++.++.+|+++.+...++.+
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~---------g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~ 73 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLEN---------YNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR 73 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHh---------CCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh
Confidence 567887776 477766666655310 012478888765431 11368899999999876555432
Q ss_pred hcCCCCccEEeeCCCC
Q 030299 114 HFDGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~ 129 (179)
.+|.|++..+.
T Consensus 74 -----~iD~Vih~Ag~ 84 (324)
T TIGR03589 74 -----GVDYVVHAAAL 84 (324)
T ss_pred -----cCCEEEECccc
Confidence 48999998764
No 302
>PRK05717 oxidoreductase; Validated
Probab=77.88 E-value=11 Score=30.29 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.|.+||=.|++.| ....+++++.. .+.+|+.+|.++.. . ...+.++++|+++.+...++.+
T Consensus 9 ~~k~vlItG~sg~-IG~~~a~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (255)
T PRK05717 9 NGRVALVTGAARG-IGLGIAAWLIA-----------EGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVA 76 (255)
T ss_pred CCCEEEEeCCcch-HHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHH
Confidence 4678898887644 55555554432 14689989877531 1 1357788999999875544333
Q ss_pred hcC--CCCccEEeeCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~ 130 (179)
... -+++|+|++..+..
T Consensus 77 ~~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 77 EVLGQFGRLDALVCNAAIA 95 (255)
T ss_pred HHHHHhCCCCEEEECCCcc
Confidence 221 13689999988643
No 303
>PRK07806 short chain dehydrogenase; Provisional
Probab=77.85 E-value=14 Score=29.43 Aligned_cols=76 Identities=12% Similarity=-0.025 Sum_probs=47.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~~ 110 (179)
+.++|=.|++ |+.-..+++++.. .+..|++++.++... ..++.++++|+++.+...+
T Consensus 6 ~k~vlItGas-ggiG~~l~~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGSS-RGIGADTAKILAG-----------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 5678888865 4555555555432 145788876543210 1246788999999886655
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -..+|.|++..+.
T Consensus 74 ~~~~~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 74 LMDTAREEFGGLDALVLNASG 94 (248)
T ss_pred HHHHHHHhCCCCcEEEECCCC
Confidence 544321 1368999988754
No 304
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=77.83 E-value=32 Score=29.37 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------------CCCCeeEEeccccc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------------PIEGVIQVQGDITN 104 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------------~~~~v~~i~gDi~~ 104 (179)
.+.++||=.| |+|-.-.++.+++-. .+..|+++|..+.. ...++.++.+|+++
T Consensus 13 ~~~~~vlVtG-atGfiG~~lv~~L~~-----------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (348)
T PRK15181 13 LAPKRWLITG-VAGFIGSGLLEELLF-----------LNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK 80 (348)
T ss_pred ccCCEEEEEC-CccHHHHHHHHHHHH-----------CCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence 3456777766 567777777776642 13589999975421 01357889999999
Q ss_pred hhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 105 ARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 105 ~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.+....+. . .+|+|++-++..
T Consensus 81 ~~~l~~~~---~--~~d~ViHlAa~~ 101 (348)
T PRK15181 81 FTDCQKAC---K--NVDYVLHQAALG 101 (348)
T ss_pred HHHHHHHh---h--CCCEEEECcccc
Confidence 76544443 2 489999988753
No 305
>PRK10458 DNA cytosine methylase; Provisional
Probab=77.54 E-value=6.2 Score=36.15 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=36.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---CCCeeEEeccccchh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---IEGVIQVQGDITNAR 106 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~---~~~v~~i~gDi~~~~ 106 (179)
.-+++||.||.||++.-+-.. + .-.|.++|+.+.. . .++...+.+||++..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-------------~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-------------GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-------------CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 348999999999999998543 3 2367889999842 1 134456678888764
No 306
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=77.43 E-value=22 Score=28.32 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=49.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCeeEEeccccchhhHHHHHhhcC--CC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFD--GC 118 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-~~~v~~i~gDi~~~~~~~~l~~~~~--~~ 118 (179)
+.++|=.|++. +....+++++.. .+.+|++++.++... ...+.++++|+++.+..+++.+... .+
T Consensus 8 ~k~vlItGas~-~iG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (252)
T PRK08220 8 GKTVWVTGAAQ-GIGYAVALAFVE-----------AGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETG 75 (252)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHH-----------CCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 45677667664 455555555432 256899998877321 2357788999999876666554321 13
Q ss_pred CccEEeeCCCCC
Q 030299 119 KADLVVCDGAPD 130 (179)
Q Consensus 119 ~~D~VlsD~~~~ 130 (179)
++|+|++.....
T Consensus 76 ~id~vi~~ag~~ 87 (252)
T PRK08220 76 PLDVLVNAAGIL 87 (252)
T ss_pred CCCEEEECCCcC
Confidence 689999987643
No 307
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=77.37 E-value=13 Score=30.86 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=42.6
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC----CCCeeEEeccccchhhHHHHHhhcCCCCccEEee
Q 030299 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP----IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 125 (179)
Q Consensus 50 agpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~----~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vls 125 (179)
.|+|....++++.+-. .+..|++++..+... ..+++++++|+++.+..+++. . .+|+|++
T Consensus 7 G~~G~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~---~--~~d~vi~ 70 (328)
T TIGR03466 7 GATGFVGSAVVRLLLE-----------QGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAV---A--GCRALFH 70 (328)
T ss_pred CCccchhHHHHHHHHH-----------CCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHH---h--CCCEEEE
Confidence 3566677777766532 146899999876431 137889999999976544433 2 5799998
Q ss_pred CCCC
Q 030299 126 DGAP 129 (179)
Q Consensus 126 D~~~ 129 (179)
..+.
T Consensus 71 ~a~~ 74 (328)
T TIGR03466 71 VAAD 74 (328)
T ss_pred ecee
Confidence 7653
No 308
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.28 E-value=25 Score=28.69 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=49.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~--~~~v~~i~gDi~~~~~~~ 109 (179)
.++++|=.|++.|. -..+++++.. .+..|+.+|.++.. . ..++.++++|+++.+..+
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~ 74 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLAR-----------AGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLE 74 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHH
Confidence 36678888877654 4444444432 14688888876521 0 135778999999987666
Q ss_pred HHHhhcC-CCCccEEeeCCCC
Q 030299 110 VVIRHFD-GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~-~~~~D~VlsD~~~ 129 (179)
++.+... -+.+|+++++.+.
T Consensus 75 ~~~~~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 75 RTVKELKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHHHHHHhhCCCcEEEECCCC
Confidence 6555432 1368999988754
No 309
>PRK06197 short chain dehydrogenase; Provisional
Probab=77.18 E-value=40 Score=28.03 Aligned_cols=77 Identities=13% Similarity=0.003 Sum_probs=49.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~ 108 (179)
.+.+||=.|+. ||....+++++.. .+..|+.++.++.. +...+.++++|+++.+..
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v 82 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAA-----------KGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASV 82 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHH
Confidence 45678877765 5555555555432 14578777765421 113577889999998876
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+++.+.+. -.++|+|+++.+.
T Consensus 83 ~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 83 RAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHHHHHhhCCCCCEEEECCcc
Confidence 66655432 1368999998864
No 310
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.02 E-value=11 Score=30.62 Aligned_cols=78 Identities=15% Similarity=0.019 Sum_probs=50.9
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CC--CCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----AP--IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~--~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.++++|=.|++. +|.-..+++++.. .+..|+.++.+.. +. ...+.++++|+++.+..+++.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-----------QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 367889999985 5666666666532 1467887765421 11 135778899999987666555
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+.+|+++++...
T Consensus 75 ~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHHHhCCCCEEEEcccc
Confidence 4332 1469999998753
No 311
>PLN00198 anthocyanidin reductase; Provisional
Probab=76.86 E-value=37 Score=28.65 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.+||=.|+. |..-.++++.+-. .+.+|+++...+.. ..++++++.+|+++.+...+
T Consensus 9 ~~~vlItG~~-GfIG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 76 (338)
T PLN00198 9 KKTACVIGGT-GFLASLLIKLLLQ-----------KGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEA 76 (338)
T ss_pred CCeEEEECCc-hHHHHHHHHHHHH-----------CCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHH
Confidence 5567766655 7777777776532 13578766554321 11258889999999876544
Q ss_pred HHhhcCCCCccEEeeCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+ .+|.|++-+++
T Consensus 77 ~~~-----~~d~vih~A~~ 90 (338)
T PLN00198 77 PIA-----GCDLVFHVATP 90 (338)
T ss_pred HHh-----cCCEEEEeCCC
Confidence 432 47999998875
No 312
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.73 E-value=10 Score=29.95 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=49.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++|+=.|++ |+....+++.+.. .+..|++++.++.. ...++.++++|+++.+..+++.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 72 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALK-----------EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVI 72 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHH
Confidence 5688888886 6666666666532 14689999877631 1236788999999987665555
Q ss_pred hhcC--CCCccEEeeCCC
Q 030299 113 RHFD--GCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~ 128 (179)
+... -..+|.+++..+
T Consensus 73 ~~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 73 EKAAKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHHHHhCCCCEEEEcCC
Confidence 4321 135798888764
No 313
>PRK12828 short chain dehydrogenase; Provisional
Probab=76.55 E-value=9.8 Score=29.82 Aligned_cols=76 Identities=13% Similarity=0.043 Sum_probs=49.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.++|=.|++ |+....+++.+.. .+..|++++.++.. ...++..+.+|+.+.+..+++.+
T Consensus 7 ~k~vlItGat-g~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (239)
T PRK12828 7 GKVVAITGGF-GGLGRATAAWLAA-----------RGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVD 74 (239)
T ss_pred CCEEEEECCC-CcHhHHHHHHHHH-----------CCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHH
Confidence 5677777865 6666666665532 14679999876531 12467788899999876555544
Q ss_pred hcC--CCCccEEeeCCCC
Q 030299 114 HFD--GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~ 129 (179)
... -+++|+|++..+.
T Consensus 75 ~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 75 EVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHhCCcCEEEECCcc
Confidence 321 1368999997653
No 314
>PRK08219 short chain dehydrogenase; Provisional
Probab=76.24 E-value=21 Score=27.71 Aligned_cols=74 Identities=11% Similarity=0.140 Sum_probs=50.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+++|=.|++ |+....+++.+.. . ..|++++.++-. ..+++.++++|+++.+..+++.+.+.
T Consensus 4 ~~vlVtG~~-g~iG~~l~~~l~~-----------~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 70 (227)
T PRK08219 4 PTALITGAS-RGIGAAIARELAP-----------T-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLG 70 (227)
T ss_pred CEEEEecCC-cHHHHHHHHHHHh-----------h-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcC
Confidence 467777764 6666666665532 2 679999877522 23468889999999887777665442
Q ss_pred CCCccEEeeCCCCCC
Q 030299 117 GCKADLVVCDGAPDV 131 (179)
Q Consensus 117 ~~~~D~VlsD~~~~~ 131 (179)
+.|.|++......
T Consensus 71 --~id~vi~~ag~~~ 83 (227)
T PRK08219 71 --RLDVLVHNAGVAD 83 (227)
T ss_pred --CCCEEEECCCcCC
Confidence 6899999776533
No 315
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=76.13 E-value=3.8 Score=30.43 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=25.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA 90 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~ 90 (179)
++...++|||||.|-..-.|... + ..=.|+|...-+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E-G--------------y~G~GiD~R~Rk 92 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE-G--------------YPGWGIDARRRK 92 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC-C--------------CCcccccccccc
Confidence 34567999999999777666554 2 345677877643
No 316
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=75.94 E-value=8.9 Score=33.53 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 78 LPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 78 ~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
+.+|+.+|...-. .-++..|+++||.|.+...++... ..+|+|++-++-
T Consensus 26 d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~---~~~D~VvhfAAE 84 (340)
T COG1088 26 DDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKE---YQPDAVVHFAAE 84 (340)
T ss_pred CceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHh---cCCCeEEEechh
Confidence 5789999988742 236899999999998877776653 368999997763
No 317
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.88 E-value=15 Score=29.12 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=49.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.++|=.|++ |+....+++.+.. .+..|+.+|.++-. ....+.++++|+++.+..++
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQ-----------KGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEA 71 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 36688888864 5556666655432 14678989877521 12356778999999876666
Q ss_pred HHhhcCC--CCccEEeeCCC
Q 030299 111 VIRHFDG--CKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~~--~~~D~VlsD~~ 128 (179)
+.+.... .++|.|++..+
T Consensus 72 ~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 72 TFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 5554321 36899999765
No 318
>PRK07825 short chain dehydrogenase; Provisional
Probab=75.73 E-value=21 Score=29.02 Aligned_cols=78 Identities=15% Similarity=0.015 Sum_probs=48.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+.++|=.||+. |....+++++.. .+..|+.++.++.. .+..+.++++|+++.+..+++.+..
T Consensus 5 ~~~ilVtGasg-giG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (273)
T PRK07825 5 GKVVAITGGAR-GIGLATARALAA-----------LGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAV 72 (273)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHH
Confidence 45778778764 455555554432 14678888876521 1235788899999987655554433
Q ss_pred C--CCCccEEeeCCCCCC
Q 030299 116 D--GCKADLVVCDGAPDV 131 (179)
Q Consensus 116 ~--~~~~D~VlsD~~~~~ 131 (179)
. -+++|+++++.+...
T Consensus 73 ~~~~~~id~li~~ag~~~ 90 (273)
T PRK07825 73 EADLGPIDVLVNNAGVMP 90 (273)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 2 146899999876543
No 319
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=75.58 E-value=10 Score=32.68 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHH
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.......|+=+|||||..-.+|.+..+.- +-.-+-+-+|..|.. ++.+|+.++. .++.+...++.
T Consensus 54 ~~~~~~~~VVYiGsApG~Hi~~L~~lf~~~---------~~~i~wvLiDp~~f~~~l~~l~~v~l~~~-fftee~~~~~~ 123 (294)
T PF01358_consen 54 GILDGPVTVVYIGSAPGTHIPFLFDLFPDL---------KVPIKWVLIDPRPFCISLEELSNVTLIQR-FFTEEYARRLR 123 (294)
T ss_dssp TTSTT-EEEEEES-SS-HHHHHHHHHHHHT---------T--EEEEEEESS---GGGTT-TTEEEEES----HHHHHHHH
T ss_pred CCCCCceEEEEecCCCcchHHHHHHHHHhc---------CCceEEEEECCcchhhhhcccCcEEeehh-hCCHHHHHHHH
Confidence 333344689999999999999999887521 001258889999963 4667766554 44555556666
Q ss_pred hhcCCCCccE-EeeCCC
Q 030299 113 RHFDGCKADL-VVCDGA 128 (179)
Q Consensus 113 ~~~~~~~~D~-VlsD~~ 128 (179)
+... . ++ .+||..
T Consensus 124 ~~~~--~-~illISDIR 137 (294)
T PF01358_consen 124 DKLN--L-KILLISDIR 137 (294)
T ss_dssp HHHT--T-EEEEEE---
T ss_pred hhcC--C-CeEEEEecc
Confidence 5432 2 44 477875
No 320
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=75.53 E-value=35 Score=26.88 Aligned_cols=76 Identities=11% Similarity=0.008 Sum_probs=46.3
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC--CCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP--IEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~--~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
+||=.|++.|.-...+ +++... +....|+..+...... ..++.++++|+++.+..+++.+.+ +.+|
T Consensus 2 ~vlItGas~gIG~~ia-~~l~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~~~~~~~~~--~~id 69 (235)
T PRK09009 2 NILIVGGSGGIGKAMV-KQLLER---------YPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQLSEQF--TQLD 69 (235)
T ss_pred EEEEECCCChHHHHHH-HHHHHh---------CCCCEEEEEccCCccccccCceEEEEecCCCHHHHHHHHHhc--CCCC
Confidence 5677777766554443 332110 0124565555444322 246788999999988777776655 3689
Q ss_pred EEeeCCCCCC
Q 030299 122 LVVCDGAPDV 131 (179)
Q Consensus 122 ~VlsD~~~~~ 131 (179)
+|++..+...
T Consensus 70 ~li~~aG~~~ 79 (235)
T PRK09009 70 WLINCVGMLH 79 (235)
T ss_pred EEEECCcccc
Confidence 9999886543
No 321
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.28 E-value=24 Score=27.90 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=50.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l 111 (179)
+.++|=.|+ .|+....+++++.. .+..|+.++.++.. . ..++.++++|+++.+...++
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 74 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAK-----------EGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAA 74 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHH
Confidence 457788886 56677766665532 14689988876521 0 12577889999998766555
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... -+.+|.|++......
T Consensus 75 ~~~~~~~~~~id~vi~~ag~~~ 96 (239)
T PRK07666 75 IEQLKNELGSIDILINNAGISK 96 (239)
T ss_pred HHHHHHHcCCccEEEEcCcccc
Confidence 54321 136899999876543
No 322
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.22 E-value=11 Score=30.71 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=51.8
Q ss_pred CCCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C-------CC-CCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A-------PI-EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~-------~~-~~v~~i~gDi~~~~~~~~ 110 (179)
.+.++|=.|+| .+|.-..+++++.. .+..|+.++.++. + .+ ..+.++++|+++.+..++
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~-----------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE-----------QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH-----------CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 35688999996 57777766666542 2467888876531 1 11 246688999999887666
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+.+|+++++...
T Consensus 75 ~~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 75 LADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHHcCCCcEEEEcccc
Confidence 655432 1479999998764
No 323
>PRK11524 putative methyltransferase; Provisional
Probab=74.88 E-value=6.5 Score=33.20 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=33.1
Q ss_pred cHHhHHHHh-CC-CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 28 KLLQIDEEF-NI-FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 28 KL~eid~~~-~l-l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
|-.+|.+++ .. -++|+.|||--||.|. |.+++.+++ -+.+|+|+++.
T Consensus 193 kP~~L~erlI~~~S~~GD~VLDPF~GSGT-T~~AA~~lg--------------R~~IG~Ei~~~ 241 (284)
T PRK11524 193 KPEALLKRIILASSNPGDIVLDPFAGSFT-TGAVAKASG--------------RKFIGIEINSE 241 (284)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCcH-HHHHHHHcC--------------CCEEEEeCCHH
Confidence 334444443 11 2789999999999985 555566664 58999999983
No 324
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=74.78 E-value=33 Score=29.22 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=50.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.+++||=.|+ +|.....+++++-. .+..|++++..+.. ...++.++.+|+++.+...++
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQ-----------RGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA 76 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH
Confidence 3678887775 67777777776642 14588888765431 124688899999998755444
Q ss_pred HhhcCCCCccEEeeCCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~~ 131 (179)
. . .+|.|++-++...
T Consensus 77 ~---~--~~d~Vih~A~~~~ 91 (353)
T PLN02896 77 V---K--GCDGVFHVAASME 91 (353)
T ss_pred H---c--CCCEEEECCcccc
Confidence 3 2 4899999887543
No 325
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.59 E-value=18 Score=29.51 Aligned_cols=78 Identities=14% Similarity=-0.031 Sum_probs=51.6
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CC--CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PI--EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~----~~--~~v~~i~gDi~~~~~~ 108 (179)
.++++|=.|++. +|.-..+++++.. ...+|+.++.+.- + .. .++..+++|+++.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 74 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-----------AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEI 74 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHH
Confidence 467899999984 7777777776642 2467777764321 0 11 3477889999998876
Q ss_pred HHHHhhcCC--CCccEEeeCCCC
Q 030299 109 EVVIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~~--~~~D~VlsD~~~ 129 (179)
+++.+...+ +++|+++++...
T Consensus 75 ~~~~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 75 TACFETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHHHHHHHhCCCccEEEECccc
Confidence 666554321 479999988653
No 326
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.49 E-value=17 Score=29.98 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=50.1
Q ss_pred CCCEEEEEccCCC-hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpG-g~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
+++++|=.|++.| |.-..+++++.. .+..|+.++.+.. ...+.+.++++|+++.+..++
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~-----------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 73 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR-----------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDA 73 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH-----------CCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHH
Confidence 3567888899873 766666665532 1457777765531 012346678999999887666
Q ss_pred HHhhcCC--CCccEEeeCCCC
Q 030299 111 VIRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~--~~~D~VlsD~~~ 129 (179)
+.+...+ +++|+++++.+.
T Consensus 74 ~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 74 MFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHHHHhhcCCCCEEEECCcc
Confidence 5543321 368999998864
No 327
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.44 E-value=23 Score=33.43 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=47.7
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------------------CCCCeeEEec
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------------------PIEGVIQVQG 100 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------------------~~~~v~~i~g 100 (179)
+.|++||=.|++ |+....+++++.. .+..|++++..+-. ...++.++.+
T Consensus 78 ~~gKvVLVTGAT-GgIG~aLAr~LLk-----------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~g 145 (576)
T PLN03209 78 KDEDLAFVAGAT-GKVGSRTVRELLK-----------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVEC 145 (576)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEe
Confidence 467788887774 7777777666532 14678888765421 0124788999
Q ss_pred cccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 101 DITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
|+++.+...+ .+ +.+|+|++..+.
T Consensus 146 DLtD~esI~~---aL--ggiDiVVn~AG~ 169 (576)
T PLN03209 146 DLEKPDQIGP---AL--GNASVVICCIGA 169 (576)
T ss_pred cCCCHHHHHH---Hh--cCCCEEEEcccc
Confidence 9999765433 23 358999987653
No 328
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=74.31 E-value=13 Score=30.03 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=47.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHHHhh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+||=.|++.| ....+++++.. .+..|+.++.++.. ...++.++++|+++.+..+++.+.
T Consensus 2 ~vlItGas~g-IG~aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~ 69 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLK-----------KGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKE 69 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHH
Confidence 5677787755 44444444431 14678888877521 123577889999998766655543
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
.. -+++|+|+++.+.
T Consensus 70 ~~~~~g~id~li~naG~ 86 (259)
T PRK08340 70 AWELLGGIDALVWNAGN 86 (259)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 21 1368999998764
No 329
>PLN02240 UDP-glucose 4-epimerase
Probab=74.28 E-value=52 Score=27.70 Aligned_cols=73 Identities=15% Similarity=0.076 Sum_probs=48.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------CCCCeeEEeccccchhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITNART 107 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------~~~~v~~i~gDi~~~~~ 107 (179)
+.+||=.| |+|....++++++.. ....|+++|..... ...++.++.+|+++.+.
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~-----------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 72 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLL-----------AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEA 72 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-----------CCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHH
Confidence 45777677 667777777766532 14689999854311 12368889999999876
Q ss_pred HHHHHhhcCCCCccEEeeCCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
..++.+. ..+|.|++-.+.
T Consensus 73 l~~~~~~---~~~d~vih~a~~ 91 (352)
T PLN02240 73 LEKVFAS---TRFDAVIHFAGL 91 (352)
T ss_pred HHHHHHh---CCCCEEEEcccc
Confidence 6555432 368999997654
No 330
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.24 E-value=58 Score=28.26 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=63.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.|..||==|+|.|---+.+.+-... .++++-.|+++.- ..-.+....+|+++.+...++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r------------g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR------------GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRL 104 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh------------CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHH
Confidence 3778898899999766655554321 4688889999842 121377889999998765555
Q ss_pred HhhcC--CCCccEEeeCCCCCC--CCCCcccHHHHHHHHHHHHHH
Q 030299 112 IRHFD--GCKADLVVCDGAPDV--TGLHDMDEFVQSQLILAVSIQ 152 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~--~g~~~~d~~~q~~L~~~AL~~ 152 (179)
.+... -+.+|+++.+++... +...-.|+.+|...-...+.+
T Consensus 105 a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~ 149 (300)
T KOG1201|consen 105 AKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAH 149 (300)
T ss_pred HHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHH
Confidence 54332 247999999986322 333445555555544444443
No 331
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=74.15 E-value=77 Score=30.60 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=41.9
Q ss_pred CCCCchHHHHHHhhCCcchhhhcHHhHHHHhCCCCCCCEEEEEccCCChHHHHHHHHhC
Q 030299 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRKLY 64 (179)
Q Consensus 6 ~~~~d~y~~~a~~~~~~sRaa~KL~eid~~~~ll~~g~~VlDLgagpGg~s~~l~~~~~ 64 (179)
.+..||...=-+-..+..=|-|||-.|...+++ .+ ..+|-.|=|.||.|..++...+
T Consensus 289 pr~qnPlISGLR~~Q~ATGAHYKlRsIL~~~~i-~~-~d~l~~GDGSGGita~lLR~~p 345 (675)
T PF14314_consen 289 PRIQNPLISGLRLFQLATGAHYKLRSILKNLNI-KY-RDALCGGDGSGGITACLLRMNP 345 (675)
T ss_pred ccccCcchhhhhhhcccccchhhHHHHHHhcCC-Cc-ceeEEEecCchHHHHHHHHhCc
Confidence 345666655555555566677999999988886 33 3468888899999999988765
No 332
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.39 E-value=30 Score=27.18 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-CCCeeEEeccccchhhHHHHHhhcCCCCc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-IEGVIQVQGDITNARTAEVVIRHFDGCKA 120 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-~~~v~~i~gDi~~~~~~~~l~~~~~~~~~ 120 (179)
+.+++=.|++.| ....+++++.. ....|+.++..+... ..++.++.+|+++. .+++.+.+ +++
T Consensus 5 ~k~~lVtGas~~-iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~--~~~~~~~~--~~i 68 (235)
T PRK06550 5 TKTVLITGAASG-IGLAQARAFLA-----------QGAQVYGVDKQDKPDLSGNFHFLQLDLSDD--LEPLFDWV--PSV 68 (235)
T ss_pred CCEEEEcCCCch-HHHHHHHHHHH-----------CCCEEEEEeCCcccccCCcEEEEECChHHH--HHHHHHhh--CCC
Confidence 457777776554 44544454431 146888888776432 23577889999886 44455544 368
Q ss_pred cEEeeCCC
Q 030299 121 DLVVCDGA 128 (179)
Q Consensus 121 D~VlsD~~ 128 (179)
|.|++...
T Consensus 69 d~lv~~ag 76 (235)
T PRK06550 69 DILCNTAG 76 (235)
T ss_pred CEEEECCC
Confidence 99998875
No 333
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=73.38 E-value=56 Score=27.69 Aligned_cols=71 Identities=23% Similarity=0.163 Sum_probs=44.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----CCCCCeeEEecccc-chhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----APIEGVIQVQGDIT-NARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~~~~~v~~i~gDi~-~~~~~~~l~~~~~~ 117 (179)
+||=.| |+|....++++++-. .....|+++|.++. .+.++++++.+|++ +.+...++.
T Consensus 3 ~ilVtG-atGfiGs~l~~~L~~----------~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 66 (347)
T PRK11908 3 KVLILG-VNGFIGHHLSKRILE----------TTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHV----- 66 (347)
T ss_pred EEEEEC-CCcHHHHHHHHHHHh----------CCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHH-----
Confidence 455333 567777888776531 01358999997642 12347899999998 544333322
Q ss_pred CCccEEeeCCCCC
Q 030299 118 CKADLVVCDGAPD 130 (179)
Q Consensus 118 ~~~D~VlsD~~~~ 130 (179)
.++|+|++-++..
T Consensus 67 ~~~d~ViH~aa~~ 79 (347)
T PRK11908 67 KKCDVILPLVAIA 79 (347)
T ss_pred cCCCEEEECcccC
Confidence 2589999877643
No 334
>PRK06138 short chain dehydrogenase; Provisional
Probab=73.25 E-value=39 Score=26.71 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++|=.||+ |+....+++++.. .+.+|+.++.++.. .-..+..+++|+++.+..+++.
T Consensus 5 ~k~~lItG~s-g~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (252)
T PRK06138 5 GRVAIVTGAG-SGIGRATAKLFAR-----------EGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALV 72 (252)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHH-----------CCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 4577777875 5566665555432 14688888766421 0124678899999987655554
Q ss_pred hhcC--CCCccEEeeCCCCCC
Q 030299 113 RHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~~~ 131 (179)
+... -+++|.|++..+...
T Consensus 73 ~~i~~~~~~id~vi~~ag~~~ 93 (252)
T PRK06138 73 DFVAARWGRLDVLVNNAGFGC 93 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 4321 137899999887543
No 335
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=72.85 E-value=1.5 Score=36.81 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHhCCCC--CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEe
Q 030299 33 DEEFNIFE--GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQ 99 (179)
Q Consensus 33 d~~~~ll~--~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~ 99 (179)
|+..++++ +|..++|.--|.||.|.-+.++.+ ..+++|.|..|.+. .+.+..+-
T Consensus 33 devl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-------------e~k~yalDrDP~A~~La~~~s~el~~~~l~a~L 99 (303)
T KOG2782|consen 33 DEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-------------ELKNYALDRDPVARKLAHFHSDELMHPTLKAVL 99 (303)
T ss_pred hhHHHHcCCCCCceEEEEeccCCcchHHHHHhCc-------------HhhhhhhccChHHHHHHHHhhHhhcchhHHHHH
Confidence 34444454 588999999999999999999875 57899999998521 12233334
Q ss_pred ccccchhhHHHHHhh-cCCCCccEEeeCCCCCC
Q 030299 100 GDITNARTAEVVIRH-FDGCKADLVVCDGAPDV 131 (179)
Q Consensus 100 gDi~~~~~~~~l~~~-~~~~~~D~VlsD~~~~~ 131 (179)
|++.+.+.. +.++ +.+.+||-|+-|..|+.
T Consensus 100 g~Fs~~~~l--~~~~gl~~~~vDGiLmDlGcSS 130 (303)
T KOG2782|consen 100 GNFSYIKSL--IADTGLLDVGVDGILMDLGCSS 130 (303)
T ss_pred hhhHHHHHH--HHHhCCCcCCcceEEeecCccc
Confidence 555444321 1111 23567888888876654
No 336
>PRK06180 short chain dehydrogenase; Provisional
Probab=72.79 E-value=41 Score=27.45 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=50.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+++||=.||+ |+....+++++.. .+..|++++.++.. ...++..+++|+++.+...++.+.
T Consensus 4 ~~~vlVtGas-ggiG~~la~~l~~-----------~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVS-SGFGRALAQAALA-----------AGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCC-ChHHHHHHHHHHh-----------CcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHH
Confidence 5577877765 5566666665532 14689999976631 113577889999998765555443
Q ss_pred cC--CCCccEEeeCCCCCC
Q 030299 115 FD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~~~ 131 (179)
.. -+.+|.|++..+...
T Consensus 72 ~~~~~~~~d~vv~~ag~~~ 90 (277)
T PRK06180 72 AEATFGPIDVLVNNAGYGH 90 (277)
T ss_pred HHHHhCCCCEEEECCCccC
Confidence 21 135899999876543
No 337
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.45 E-value=43 Score=26.47 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=48.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+.++|=.|++ |+....+++++-. .+..|+.++.++.. ...++.++.+|+++.+..+++
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 70 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAE-----------EGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTA 70 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 5677888865 5555555555432 14588888876521 123588899999998766555
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -.++|+|++..+.
T Consensus 71 ~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 71 VAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 44322 1368999888754
No 338
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=72.33 E-value=45 Score=26.84 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=49.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+++++|=.|++.| .-..+++++.. .+..|+.++.++.. ...++.++++|+++.+..+++.
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAK-----------AGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIV 74 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH-----------CCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH
Confidence 4678898887654 55555555432 25678888765421 1135778899999988766665
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+++|+++++...
T Consensus 75 ~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 75 SQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 4321 1368999998764
No 339
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.18 E-value=35 Score=27.40 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=48.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~~ 109 (179)
+.+||=.|++. +....+++++.. .+..|+.+|.++.. ...++.++++|+++.+..+
T Consensus 7 ~k~vlVtGas~-gIG~~~a~~l~~-----------~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~ 74 (260)
T PRK07063 7 GKVALVTGAAQ-GIGAAIARAFAR-----------EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVA 74 (260)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHH
Confidence 56788888764 455555554432 14689888876521 1124778899999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~ 129 (179)
++.+... -+.+|.+++..+.
T Consensus 75 ~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 75 AAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHhCCCcEEEECCCc
Confidence 5444321 1368999998764
No 340
>PRK08278 short chain dehydrogenase; Provisional
Probab=71.84 E-value=50 Score=26.98 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=47.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------------CCCeeEEecccc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------------IEGVIQVQGDIT 103 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------------~~~v~~i~gDi~ 103 (179)
.+.++|=.||+. +....+++.+.. .+..|+.++.++... ..++.++++|++
T Consensus 5 ~~k~vlItGas~-gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~ 72 (273)
T PRK08278 5 SGKTLFITGASR-GIGLAIALRAAR-----------DGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVR 72 (273)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH-----------CCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCC
Confidence 356788777754 455555554432 146888888764210 124678899999
Q ss_pred chhhHHHHHhhcC--CCCccEEeeCCCC
Q 030299 104 NARTAEVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 104 ~~~~~~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+...++.+... -+.+|.|++..+.
T Consensus 73 ~~~~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 73 DEDQVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 9886555544321 1369999998764
No 341
>PRK05872 short chain dehydrogenase; Provisional
Probab=71.82 E-value=49 Score=27.49 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=48.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~---~~v~~i~gDi~~~~~~~~l 111 (179)
++.+||=.|++.| ....+++.+.. .+..|+.++.++.. .+ ..+..+++|+++.+..+++
T Consensus 8 ~gk~vlItGas~g-IG~~ia~~l~~-----------~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 8 AGKVVVVTGAARG-IGAELARRLHA-----------RGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHH
Confidence 4668888887655 44444444432 14688888876521 11 2345567999998766555
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... -+++|+|+++.....
T Consensus 76 ~~~~~~~~g~id~vI~nAG~~~ 97 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGIAS 97 (296)
T ss_pred HHHHHHHcCCCCEEEECCCcCC
Confidence 44321 146999999887543
No 342
>PRK06194 hypothetical protein; Provisional
Probab=71.74 E-value=53 Score=26.73 Aligned_cols=79 Identities=19% Similarity=0.052 Sum_probs=49.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+.+||=.|++ |+....+++++.. .+..|+.+|.++.. ...++.++.+|+++.+..+++
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAA-----------LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHH-----------CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 4578866765 5555555555432 14688988876421 012467789999998765555
Q ss_pred HhhcC--CCCccEEeeCCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDVT 132 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~~ 132 (179)
.+... .+++|+|++..+....
T Consensus 74 ~~~~~~~~g~id~vi~~Ag~~~~ 96 (287)
T PRK06194 74 ADAALERFGAVHLLFNNAGVGAG 96 (287)
T ss_pred HHHHHHHcCCCCEEEECCCCCCC
Confidence 44321 1368999999876443
No 343
>PLN02214 cinnamoyl-CoA reductase
Probab=71.68 E-value=27 Score=29.87 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C----CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P----IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~----~~~v~~i~gDi~~~~~~~ 109 (179)
++++||=.|+ +|.....+++++-. .+..|++++.++-. . ..+++++++|+++.+...
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 76 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLE-----------RGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALK 76 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----------CcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHH
Confidence 4667888776 57777777766532 14578888765421 0 135788899999977655
Q ss_pred HHHhhcCCCCccEEeeCCCCC
Q 030299 110 VVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~~~~~D~VlsD~~~~ 130 (179)
++.+ .+|.|++-+++.
T Consensus 77 ~~~~-----~~d~Vih~A~~~ 92 (342)
T PLN02214 77 AAID-----GCDGVFHTASPV 92 (342)
T ss_pred HHHh-----cCCEEEEecCCC
Confidence 4432 589999988764
No 344
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.59 E-value=51 Score=27.04 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCeEEEEeCCCCC--CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 78 LPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 78 ~~~VvavD~~~~~--~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
+..|+|+=-++.+ ..+++..++.|++++....+. + .++|+|++--.+..++. ...|....+.+..+|+
T Consensus 24 GHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~---l--~g~DaVIsA~~~~~~~~-~~~~~k~~~~li~~l~ 93 (211)
T COG2910 24 GHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASD---L--AGHDAVISAFGAGASDN-DELHSKSIEALIEALK 93 (211)
T ss_pred CCeeEEEEeChHhccccccceeecccccChhhhHhh---h--cCCceEEEeccCCCCCh-hHHHHHHHHHHHHHHh
Confidence 5689998877743 347899999999998754332 2 37999998654332222 2223334555555555
No 345
>PRK05650 short chain dehydrogenase; Provisional
Probab=71.53 E-value=47 Score=26.88 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=47.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+||=.|+ +|+....+++.+.. .+..|+.++.++.. ....+.++++|+++.+...++.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~-----------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 69 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAR-----------EGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQ 69 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH
Confidence 5666665 45555555555432 14678888876521 12357788999999876555554
Q ss_pred hcC--CCCccEEeeCCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~~ 131 (179)
... -.++|.|++......
T Consensus 70 ~i~~~~~~id~lI~~ag~~~ 89 (270)
T PRK05650 70 ACEEKWGGIDVIVNNAGVAS 89 (270)
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 321 136899999876543
No 346
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=71.50 E-value=12 Score=31.62 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=34.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-------CC-CeeEEeccccchhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IE-GVIQVQGDITNART 107 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-------~~-~v~~i~gDi~~~~~ 107 (179)
...|.++|-||||.|..+.+.-.. .-.|+-.|...+.+ .+ ......+|+...+.
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~------------RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR~~I 112 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVA------------RLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLRFKI 112 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchh------------heeeeeeccccChHHHHHhhcCCcceEEeccccceehH
Confidence 358999999999999998865321 23566666655421 12 33334677766543
No 347
>PRK08643 acetoin reductase; Validated
Probab=71.49 E-value=50 Score=26.33 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=47.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l 111 (179)
++++|=.|++ |+....+++++.. .+..|+.+|.++-. . ..++.++++|+++.+...++
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVE-----------DGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAA 69 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 3456666655 5555555555432 14689888876521 1 13577889999998865555
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -+++|.|++..+.
T Consensus 70 ~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 70 VRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 54321 1368999998754
No 348
>PRK09135 pteridine reductase; Provisional
Probab=71.38 E-value=42 Score=26.35 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=51.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C--CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P--IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~--~~~v~~i~gDi~~~~~~ 108 (179)
.+.+||=.||+ |+....+++++.. .+..|++++.+... . ..++.++++|+++.+..
T Consensus 5 ~~~~vlItGa~-g~iG~~l~~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 72 (249)
T PRK09135 5 SAKVALITGGA-RRIGAAIARTLHA-----------AGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDAL 72 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHH
Confidence 35678988965 6677776666542 25789999876421 1 12577889999998866
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
..+.+... -..+|.|++..+.
T Consensus 73 ~~~~~~~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 73 PELVAACVAAFGRLDALVNNASS 95 (249)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55554321 1358999998764
No 349
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=71.30 E-value=6.5 Score=32.82 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=41.3
Q ss_pred CCC--CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------C------CCCeeE
Q 030299 40 EGV--KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------P------IEGVIQ 97 (179)
Q Consensus 40 ~~g--~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------~------~~~v~~ 97 (179)
++| .+|||.=||-|.=+.+++. ++ ++|++++-+|.- + ...++.
T Consensus 72 k~~~~~~VLDaTaGLG~Da~vlA~-~G--------------~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l 136 (234)
T PF04445_consen 72 KPGMRPSVLDATAGLGRDAFVLAS-LG--------------CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQL 136 (234)
T ss_dssp BTTB---EEETT-TTSHHHHHHHH-HT----------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEE
T ss_pred CCCCCCEEEECCCcchHHHHHHHc-cC--------------CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEE
Confidence 555 4899999999999999986 44 689999999940 1 136778
Q ss_pred EeccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 98 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 98 i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+.+|..+.-. .++..+|+|..|..+..
T Consensus 137 ~~~d~~~~L~-------~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 137 IHGDALEYLR-------QPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp EES-CCCHCC-------CHSS--SEEEE--S---
T ss_pred EcCCHHHHHh-------hcCCCCCEEEECCCCCC
Confidence 8888877421 23568999999998765
No 350
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=71.21 E-value=22 Score=28.68 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=48.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C-CCCeeEEeccccchhhHHHHHh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.++|=.|++ |+....+++++.. .+..|+++|..+.. . -..+..+++|+++.+..+++.+
T Consensus 10 ~k~~lItG~~-~gIG~a~a~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 77 (253)
T PRK08993 10 GKVAVVTGCD-TGLGQGMALGLAE-----------AGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLE 77 (253)
T ss_pred CCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 5678888875 4555555555532 24689988876531 1 1246778999999876555544
Q ss_pred hcC--CCCccEEeeCCCC
Q 030299 114 HFD--GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~ 129 (179)
... -+.+|++++..+.
T Consensus 78 ~~~~~~~~~D~li~~Ag~ 95 (253)
T PRK08993 78 RAVAEFGHIDILVNNAGL 95 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 321 1368999988754
No 351
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=70.91 E-value=63 Score=27.23 Aligned_cols=73 Identities=16% Similarity=0.009 Sum_probs=47.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C--------CCCeeEEeccccchh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P--------IEGVIQVQGDITNAR 106 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~--------~~~v~~i~gDi~~~~ 106 (179)
+++||=.|+ +|+.-..+++++.. .+.+|++++..+.. . ..+++++.+|+++.+
T Consensus 6 ~~~vlVTGa-tGfiG~~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 73 (340)
T PLN02653 6 RKVALITGI-TGQDGSYLTEFLLS-----------KGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDAS 73 (340)
T ss_pred CCEEEEECC-CCccHHHHHHHHHH-----------CCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHH
Confidence 467777775 45555565555532 14689988765421 0 124788999999987
Q ss_pred hHHHHHhhcCCCCccEEeeCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
...++.+. ..+|+|++.++.
T Consensus 74 ~~~~~~~~---~~~d~Vih~A~~ 93 (340)
T PLN02653 74 SLRRWLDD---IKPDEVYNLAAQ 93 (340)
T ss_pred HHHHHHHH---cCCCEEEECCcc
Confidence 66655543 258999998875
No 352
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.87 E-value=13 Score=30.84 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 37 NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 37 ~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
++++.+.+++|+||=-+....+|.+..+ ...++++|+++-
T Consensus 12 ~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-------------~~~~va~eV~~g 51 (226)
T COG2384 12 NLVKQGARIADIGSDHAYLPIYLVKNNP-------------ASTAVAGEVVPG 51 (226)
T ss_pred HHHHcCCceeeccCchhHhHHHHHhcCC-------------cceEEEeecccC
Confidence 4567788899999999999999998765 589999999984
No 353
>PRK07062 short chain dehydrogenase; Provisional
Probab=70.87 E-value=53 Score=26.38 Aligned_cols=77 Identities=8% Similarity=0.005 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC--CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI--EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~--~~v~~i~gDi~~~~~~ 108 (179)
.+.++|=.|++.|.-. .+++++.. .+..|+.++.++.. .. ..+..+.+|+++.+..
T Consensus 7 ~~k~~lItGas~giG~-~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 74 (265)
T PRK07062 7 EGRVAVVTGGSSGIGL-ATVELLLE-----------AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADV 74 (265)
T ss_pred CCCEEEEeCCCchHHH-HHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHH
Confidence 3567888887766444 44444421 15689988887631 11 2466789999998766
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+++.+... -+.+|.|+++.+.
T Consensus 75 ~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 75 AAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 55554321 1368999998764
No 354
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=70.86 E-value=2.1 Score=39.02 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=36.2
Q ss_pred HHHHh-CCCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 32 IDEEF-NIFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 32 id~~~-~ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
.++++ +++++|..|-|++||-|=|+.-++.+ .+.|+|.|+.|.
T Consensus 239 Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK---------------~crV~aNDLNpe 282 (495)
T KOG2078|consen 239 EHERLSGLFKPGEVVCDVFAGVGPFALPAAKK---------------GCRVYANDLNPE 282 (495)
T ss_pred HHHHHhhccCCcchhhhhhcCcCccccchhhc---------------CcEEEecCCCHH
Confidence 34444 57899999999999999999988876 489999999993
No 355
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.77 E-value=38 Score=28.41 Aligned_cols=77 Identities=22% Similarity=0.091 Sum_probs=48.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~ 109 (179)
.+.++|=.|++.|.-... ++.+.. .+..|+.+|...... -..+.++++|+++.+...
T Consensus 11 ~~k~~lVTGas~gIG~~i-a~~L~~-----------~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~ 78 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAE-ALGLAR-----------LGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATAD 78 (306)
T ss_pred CCCEEEEECCCChHHHHH-HHHHHH-----------CCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 466788888876654444 343321 146888888754210 124778899999987666
Q ss_pred HHHhhcC-CCCccEEeeCCCC
Q 030299 110 VVIRHFD-GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~-~~~~D~VlsD~~~ 129 (179)
++.+... -+++|+|+++.+.
T Consensus 79 ~~~~~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 79 ELVATAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 6554321 1469999998764
No 356
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=70.64 E-value=11 Score=33.92 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--------------------CCCCCeeEE
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--------------------APIEGVIQV 98 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--------------------~~~~~v~~i 98 (179)
+++++.+.|||.|-|+-...++...+ .-+=+|+.+..- ..+.-++.+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~-------------~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAG-------------CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhc-------------cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 48899999999999999887776544 234566666542 012346788
Q ss_pred eccccchhhHHHHHhhcCCCCccEEeeC
Q 030299 99 QGDITNARTAEVVIRHFDGCKADLVVCD 126 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~~~~~D~VlsD 126 (179)
+|++.++....+|.. ..++|+++
T Consensus 257 ~gsf~~~~~v~eI~~-----eatvi~vN 279 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQT-----EATVIFVN 279 (419)
T ss_pred ccccCCHHHHHHHhh-----cceEEEEe
Confidence 999999887776653 45666664
No 357
>PLN02253 xanthoxin dehydrogenase
Probab=70.46 E-value=23 Score=28.90 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=49.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
++++|=.|++ |+....+++++.. .+..|+.+|..+.. ...++.++++|+++.+..+++.
T Consensus 18 ~k~~lItGas-~gIG~~la~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 85 (280)
T PLN02253 18 GKVALVTGGA-TGIGESIVRLFHK-----------HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAV 85 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHH
Confidence 5678888865 5566666665532 14688888876421 1135788999999987655544
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+++|.|++..+.
T Consensus 86 ~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 86 DFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHHHhCCCCEEEECCCc
Confidence 3221 1368999998764
No 358
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=69.96 E-value=5.5 Score=31.17 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP 88 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~ 88 (179)
++|+.|||--||.|.-. +++.+++ -+.+|+|+++
T Consensus 190 ~~gdiVlDpF~GSGTT~-~aa~~l~--------------R~~ig~E~~~ 223 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTA-VAAEELG--------------RRYIGIEIDE 223 (231)
T ss_dssp -TT-EEEETT-TTTHHH-HHHHHTT---------------EEEEEESSH
T ss_pred ccceeeehhhhccChHH-HHHHHcC--------------CeEEEEeCCH
Confidence 78999999999999654 4455554 5799999986
No 359
>PRK06114 short chain dehydrogenase; Provisional
Probab=69.93 E-value=56 Score=26.20 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=48.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~ 109 (179)
++.++|=.|++ |+....+++++.. .+..|+.+|.++... ..++.++++|+++.+...
T Consensus 7 ~~k~~lVtG~s-~gIG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~ 74 (254)
T PRK06114 7 DGQVAFVTGAG-SGIGQRIAIGLAQ-----------AGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLR 74 (254)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 35677877754 5566666665532 146888888764210 125778899999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~ 129 (179)
++.+... -+++|.|++..+.
T Consensus 75 ~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 75 AAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 5444321 1468999998764
No 360
>PRK06172 short chain dehydrogenase; Provisional
Probab=69.66 E-value=27 Score=27.89 Aligned_cols=78 Identities=10% Similarity=0.035 Sum_probs=49.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.+||=.|++ |+....+++++.. .+..|+.++.++.. ...++.++.+|+++.+...+
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAR-----------EGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 35688888875 4555555555432 14689999877531 11257888999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+|++.....
T Consensus 74 ~~~~~~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 74 LVEQTIAAYGRLDYAFNNAGIE 95 (253)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 443221 13689999987643
No 361
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.66 E-value=26 Score=27.83 Aligned_cols=76 Identities=12% Similarity=0.042 Sum_probs=48.8
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.++|=.|+ +|+....+++++.. ....|+.++.++.. +...+.++++|+++.+...+
T Consensus 3 k~vlItGa-s~giG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 70 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAA-----------KGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFE 70 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHH
Confidence 46777775 56677776666542 14678888876521 12257788999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+.+. -+++|.|++..+..
T Consensus 71 ~~~~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 71 VFAEFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHHHHcCCCCEEEECCCcC
Confidence 444321 13689999987643
No 362
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=69.27 E-value=20 Score=28.82 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=46.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------C-CCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------P-IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~-~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++|=.|++.|. -..+++++.. .+..|+.+|.++.. . ...+.++++|+++.+...++.
T Consensus 8 ~k~vlVtGas~gI-G~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK12823 8 GKVVVVTGAAQGI-GRGVALRAAA-----------EGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAM 75 (260)
T ss_pred CCEEEEeCCCchH-HHHHHHHHHH-----------CCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHH
Confidence 5678888876554 4444444421 14688888876421 0 124667899999976544444
Q ss_pred hhcC--CCCccEEeeCCC
Q 030299 113 RHFD--GCKADLVVCDGA 128 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~ 128 (179)
+... -+.+|+++++..
T Consensus 76 ~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 76 AAAVEAFGRIDVLINNVG 93 (260)
T ss_pred HHHHHHcCCCeEEEECCc
Confidence 3321 136899999875
No 363
>PRK07904 short chain dehydrogenase; Provisional
Probab=69.13 E-value=60 Score=26.28 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchh
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNAR 106 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~ 106 (179)
...+++||=.||+ ||....+++++.. .+...|+.++.++-. ...++.++++|+++.+
T Consensus 5 ~~~~~~vlItGas-~giG~~la~~l~~----------~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 5 VGNPQTILLLGGT-SEIGLAICERYLK----------NAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTD 73 (253)
T ss_pred cCCCcEEEEEcCC-cHHHHHHHHHHHh----------cCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChH
Confidence 3567789998986 4555555555421 012578888776532 1126889999999977
Q ss_pred hHHHHHhhc-CCCCccEEeeCCC
Q 030299 107 TAEVVIRHF-DGCKADLVVCDGA 128 (179)
Q Consensus 107 ~~~~l~~~~-~~~~~D~VlsD~~ 128 (179)
..+++.+.. ..+..|++++..+
T Consensus 74 ~~~~~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 74 SHPKVIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHHHHHhcCCCCEEEEeee
Confidence 544433322 1247998887654
No 364
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=68.67 E-value=23 Score=29.92 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=53.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------CCCCCeeEEeccccchh----
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------APIEGVIQVQGDITNAR---- 106 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------~~~~~v~~i~gDi~~~~---- 106 (179)
|..++=.|..-|.-.+..-+.+.. +..+.++|-+.. .|...+.|+++|+++..
T Consensus 5 GKna~vtggagGIGl~~sk~Ll~k------------gik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~ 72 (261)
T KOG4169|consen 5 GKNALVTGGAGGIGLATSKALLEK------------GIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEA 72 (261)
T ss_pred CceEEEecCCchhhHHHHHHHHHc------------CchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHH
Confidence 666777776666544433333321 567888887763 14457889999999854
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHH
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI 146 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~ 146 (179)
+.+++...|. ..|+++...... ...++++.++..|.
T Consensus 73 ~f~ki~~~fg--~iDIlINgAGi~--~dkd~e~Ti~vNLt 108 (261)
T KOG4169|consen 73 AFDKILATFG--TIDILINGAGIL--DDKDWERTINVNLT 108 (261)
T ss_pred HHHHHHHHhC--ceEEEEcccccc--cchhHHHhhccchh
Confidence 3444445553 689988765432 24455566555554
No 365
>PRK07023 short chain dehydrogenase; Provisional
Probab=68.42 E-value=42 Score=26.62 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=47.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHh-----
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIR----- 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~----- 113 (179)
++|=.|+ .|+....+++++.. .+.+|+.++.++.. ...++..+++|+.+.+..+++..
T Consensus 3 ~vlItGa-sggiG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 70 (243)
T PRK07023 3 RAIVTGH-SRGLGAALAEQLLQ-----------PGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLA 70 (243)
T ss_pred eEEEecC-CcchHHHHHHHHHh-----------CCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHH
Confidence 5777775 55666666666532 14678888876532 11357788999999887666332
Q ss_pred hc-CCCCccEEeeCCCC
Q 030299 114 HF-DGCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~-~~~~~D~VlsD~~~ 129 (179)
.+ ...+.|.++++.+.
T Consensus 71 ~~~~~~~~~~~v~~ag~ 87 (243)
T PRK07023 71 AFVDGASRVLLINNAGT 87 (243)
T ss_pred HhccCCCceEEEEcCcc
Confidence 22 22468889888764
No 366
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=68.20 E-value=51 Score=26.35 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=48.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C------CCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P------IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~------~~~v~~i~gDi~~~~~~~ 109 (179)
+.+||=.|++ |+....+++.+.. .+..|+.+|.++.. . ...+.++.+|+++.+...
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~ 69 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAE-----------EGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVL 69 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHH
Confidence 3467888865 5566655555532 14689999977531 0 124788899999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~ 130 (179)
.+.+... -.++|.|++..+..
T Consensus 70 ~~~~~~~~~~~~id~vv~~ag~~ 92 (259)
T PRK12384 70 ALSRGVDEIFGRVDLLVYNAGIA 92 (259)
T ss_pred HHHHHHHHHcCCCCEEEECCCcC
Confidence 5444321 13689999987643
No 367
>PRK07677 short chain dehydrogenase; Provisional
Probab=67.95 E-value=59 Score=25.97 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
++++|=.|++.| ....+++.+.. .+..|+.++.++.. ....+.++++|+++.+..+++
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 68 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAE-----------EGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKM 68 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 356777777655 44444444321 14688888876531 013577889999998765554
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
..... -+++|.|++....
T Consensus 69 ~~~~~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 69 VEQIDEKFGRIDALINNAAG 88 (252)
T ss_pred HHHHHHHhCCccEEEECCCC
Confidence 44321 1368999988653
No 368
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=67.69 E-value=23 Score=28.59 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++++|=.|++.| ....+++++.. .+..|+.++.++.. . ..++.++++|+++.+..+++.+
T Consensus 5 ~~k~vlVtGas~g-IG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (263)
T PRK06200 5 HGQVALITGGGSG-IGRALVERFLA-----------EGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVD 72 (263)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHH
Confidence 3567888887654 55555555432 14688888876521 1 1357788999999876555544
Q ss_pred hcC--CCCccEEeeCCCC
Q 030299 114 HFD--GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~ 129 (179)
... -+.+|++++..+.
T Consensus 73 ~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 73 QTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 321 1368999998764
No 369
>PRK07102 short chain dehydrogenase; Provisional
Probab=67.67 E-value=28 Score=27.63 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=49.3
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
++|+=.|+. |+....+++++.. .+..|+++|.++-. +..++.++++|+++.+..+++
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 69 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAA-----------AGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAF 69 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHh-----------cCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH
Confidence 357767754 6677766666542 14689999887621 123688999999998876666
Q ss_pred HhhcCCCCccEEeeCCC
Q 030299 112 IRHFDGCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~ 128 (179)
.+... ..+|.|++...
T Consensus 70 ~~~~~-~~~d~vv~~ag 85 (243)
T PRK07102 70 LDSLP-ALPDIVLIAVG 85 (243)
T ss_pred HHHHh-hcCCEEEECCc
Confidence 65443 35799998764
No 370
>PRK05876 short chain dehydrogenase; Provisional
Probab=67.50 E-value=51 Score=27.12 Aligned_cols=78 Identities=14% Similarity=-0.014 Sum_probs=49.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C----CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P----IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~----~~~v~~i~gDi~~~~~~~~l 111 (179)
+.++|=.|++.| ....+++++.. .+..|+.+|.++.. . ...+.++++|+++.+...++
T Consensus 6 ~k~vlVTGas~g-IG~ala~~La~-----------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 6 GRGAVITGGASG-IGLATGTEFAR-----------RGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 567887787654 55555555432 14678888876521 0 12467789999998766555
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... -+++|+|+++.+...
T Consensus 74 ~~~~~~~~g~id~li~nAg~~~ 95 (275)
T PRK05876 74 ADEAFRLLGHVDVVFSNAGIVV 95 (275)
T ss_pred HHHHHHHcCCCCEEEECCCcCC
Confidence 44321 136899999886543
No 371
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=67.23 E-value=63 Score=25.77 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=49.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.+||=.|++.| ....+++.+.. .+..|+.++.++.. .-.++.++.+|+++.+...+
T Consensus 10 ~~k~ilItGas~~-IG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 77 (256)
T PRK06124 10 AGQVALVTGSARG-LGFEIARALAG-----------AGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAA 77 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------cCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 5778888886544 55555554432 14689999887521 11247788999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+++|.|++....
T Consensus 78 ~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 78 AFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 544321 1368999988754
No 372
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=66.77 E-value=6.2 Score=29.30 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=16.3
Q ss_pred EEccCCChHHH--HHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 47 DLCAAPGSWSQ--VLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 47 DLgagpGg~s~--~l~~-~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
|+||.-|-|+. +..+ ...+ .++|+++|.+|.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~------------~~~v~~~Ep~p~ 34 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGP------------GGRVHAFEPNPS 34 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--------------SEEEEE---HH
T ss_pred CcccCCChhHHHHHHHHHHcCC------------CCEEEEEECCHH
Confidence 89999995544 4432 3433 689999999884
No 373
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=66.68 E-value=48 Score=26.55 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=49.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
++.++|=.|+ .|+....+++++.. .+..|+.++.++-. . ...+.++++|+++.+..++
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~ 78 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGE-----------AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIER 78 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 4567888885 56666766666532 14678888876521 0 1256788999999887654
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+..... .+++|.|++..+.
T Consensus 79 ~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 79 LAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 444321 1368999998653
No 374
>CHL00194 ycf39 Ycf39; Provisional
Probab=66.66 E-value=43 Score=28.14 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=42.4
Q ss_pred ccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCCCccEEe
Q 030299 49 CAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 124 (179)
Q Consensus 49 gagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~Vl 124 (179)
-.|+|....++++++-. .+..|++++-++.. ...+++++.+|+++.+...+.. . ++|+|+
T Consensus 6 tGatG~iG~~lv~~Ll~-----------~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al---~--g~d~Vi 69 (317)
T CHL00194 6 IGATGTLGRQIVRQALD-----------EGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSF---K--GVTAII 69 (317)
T ss_pred ECCCcHHHHHHHHHHHH-----------CCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHH---C--CCCEEE
Confidence 34678777777766532 14689988866422 2358999999999987654433 2 479999
Q ss_pred eCC
Q 030299 125 CDG 127 (179)
Q Consensus 125 sD~ 127 (179)
+-.
T Consensus 70 ~~~ 72 (317)
T CHL00194 70 DAS 72 (317)
T ss_pred ECC
Confidence 843
No 375
>PRK06949 short chain dehydrogenase; Provisional
Probab=66.44 E-value=40 Score=26.84 Aligned_cols=77 Identities=13% Similarity=0.061 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.| |.|+....+++++.. .+..|++++.++-. ...++.++.+|+++.+...+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQ-----------AGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKA 75 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHH
Confidence 367888888 455566666555532 14579988876521 11357788999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... ..++|.|++..+.
T Consensus 76 ~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 76 AVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHhcCCCCEEEECCCC
Confidence 444321 1368999998764
No 376
>PRK06198 short chain dehydrogenase; Provisional
Probab=66.26 E-value=35 Score=27.31 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=48.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCe-EEEEeCCCCC----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPL-IVAIDLQPMA----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~-VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~ 109 (179)
++.+|+=.|++ |+....+++++.. .+.. |+.++.++.. ....+.++.+|+++.+...
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~-----------~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~ 72 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAE-----------RGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCR 72 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHH-----------CCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHH
Confidence 45678877764 5566666655532 1345 8888876521 0124667899999987665
Q ss_pred HHHhhcC--CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++.+... -+.+|.|++......
T Consensus 73 ~~~~~~~~~~g~id~li~~ag~~~ 96 (260)
T PRK06198 73 RVVAAADEAFGRLDALVNAAGLTD 96 (260)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCC
Confidence 5554321 136899999876543
No 377
>PLN02572 UDP-sulfoquinovose synthase
Probab=66.20 E-value=44 Score=30.00 Aligned_cols=73 Identities=18% Similarity=0.100 Sum_probs=47.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---C---------C---------------CCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---A---------P---------------IEG 94 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---~---------~---------------~~~ 94 (179)
+++||=.| |.|..-.++++++-. .+..|+++|.... . + -.+
T Consensus 47 ~k~VLVTG-atGfIGs~Lv~~L~~-----------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (442)
T PLN02572 47 KKKVMVIG-GDGYCGWATALHLSK-----------RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKE 114 (442)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH-----------CCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCc
Confidence 46777665 566677777766642 1468999883211 0 0 125
Q ss_pred eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCC
Q 030299 95 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 95 v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~ 129 (179)
++++.+|+++.+...++.+. .++|.|++-++.
T Consensus 115 v~~v~~Dl~d~~~v~~~l~~---~~~D~ViHlAa~ 146 (442)
T PLN02572 115 IELYVGDICDFEFLSEAFKS---FEPDAVVHFGEQ 146 (442)
T ss_pred ceEEECCCCCHHHHHHHHHh---CCCCEEEECCCc
Confidence 88999999998766555443 368999997754
No 378
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.91 E-value=56 Score=26.15 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=47.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---C--CCCeeEEeccccchhhHHHHHhhc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---P--IEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---~--~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
.++++|=.|++. +....+++++.. .+..|+.++..... . ..++.++.+|+++.+..+++.+..
T Consensus 6 ~~k~~lItGas~-gIG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (255)
T PRK06463 6 KGKVALITGGTR-GIGRAIAEAFLR-----------EGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVV 73 (255)
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHH-----------CCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHH
Confidence 356788888864 455555554432 14567766543321 1 125788999999987665555432
Q ss_pred C--CCCccEEeeCCCCC
Q 030299 116 D--GCKADLVVCDGAPD 130 (179)
Q Consensus 116 ~--~~~~D~VlsD~~~~ 130 (179)
. -+++|.|++..+..
T Consensus 74 ~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 74 EKEFGRVDVLVNNAGIM 90 (255)
T ss_pred HHHcCCCCEEEECCCcC
Confidence 1 13689999887643
No 379
>PRK07814 short chain dehydrogenase; Provisional
Probab=65.61 E-value=64 Score=26.03 Aligned_cols=77 Identities=9% Similarity=-0.048 Sum_probs=49.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.+||=.|++ |+....+++.+.. .+.+|+.++.++.. ...++.++++|+++.+...+
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 76 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAE-----------AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAG 76 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 46788888864 5555555554432 14689999877521 02357788999999876554
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+++|+|++..+.
T Consensus 77 ~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 77 LAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 443221 1368999998754
No 380
>PRK08263 short chain dehydrogenase; Provisional
Probab=65.57 E-value=53 Score=26.74 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=49.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.+||=.|+ .|+....+++++.. .+..|+.++.++.. . ...+..+++|+++.+...++.+.
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALE-----------RGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVET 70 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHH
Confidence 346777775 56666666665532 14678888876521 1 23577889999998765554443
Q ss_pred cC--CCCccEEeeCCCCCC
Q 030299 115 FD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~~~ 131 (179)
.. -.++|.|++..+...
T Consensus 71 ~~~~~~~~d~vi~~ag~~~ 89 (275)
T PRK08263 71 AVEHFGRLDIVVNNAGYGL 89 (275)
T ss_pred HHHHcCCCCEEEECCCCcc
Confidence 21 136899999876543
No 381
>PRK06940 short chain dehydrogenase; Provisional
Probab=65.37 E-value=62 Score=26.56 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=47.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+|=-|+ ||....+++++.. +..|+.+|.++-. . -..+.++++|+++.+...++.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~------------G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~ 69 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGA------------GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAA 69 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhC------------CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 3444454 5777777777742 5789988876521 0 1246788999999887666655
Q ss_pred hcC-CCCccEEeeCCCC
Q 030299 114 HFD-GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~-~~~~D~VlsD~~~ 129 (179)
... -+++|.|++..+.
T Consensus 70 ~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 70 TAQTLGPVTGLVHTAGV 86 (275)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 431 1468999998864
No 382
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=65.36 E-value=65 Score=25.26 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=47.6
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+||=.| |.|+....+++.+.. .+..|+.++.++.. ....+.++++|+++.+...++.
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 71 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLN-----------DGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEAL 71 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHH-----------cCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 566666 466677777776632 14688888876421 1124788999999987655554
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+++|+|++...-
T Consensus 72 ~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12824 72 AEIEEEEGPVDILVNNAGI 90 (245)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 4321 1368999988754
No 383
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=65.33 E-value=53 Score=25.96 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=48.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC-CCC----------CCCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ-PMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~-~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
+.++|=.|+ .|+....+++++.. .+..|+.++-. +.. ....+.++++|+++.+...+
T Consensus 6 ~~~~lItG~-s~~iG~~la~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (247)
T PRK12935 6 GKVAIVTGG-AKGIGKAITVALAQ-----------EGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANR 73 (247)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH-----------cCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 578888996 57777777766532 14567655432 210 01257888999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
+.+... -...|.|++..+...
T Consensus 74 ~~~~~~~~~~~id~vi~~ag~~~ 96 (247)
T PRK12935 74 LVEEAVNHFGKVDILVNNAGITR 96 (247)
T ss_pred HHHHHHHHcCCCCEEEECCCCCC
Confidence 444321 136899999876543
No 384
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=65.31 E-value=50 Score=29.17 Aligned_cols=81 Identities=20% Similarity=0.114 Sum_probs=51.6
Q ss_pred CCeEEEEeCCCCC-------------CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHH
Q 030299 78 LPLIVAIDLQPMA-------------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQ 144 (179)
Q Consensus 78 ~~~VvavD~~~~~-------------~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~ 144 (179)
+-.|+.+|-.-.. +..+|.|+++|+.|.+.++++.+. -+||-|++-++-..-| +.++..
T Consensus 26 gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~---~~fd~V~Hfa~~~~vg-----eS~~~p 97 (343)
T KOG1371|consen 26 GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSE---VKFDAVMHFAALAAVG-----ESMENP 97 (343)
T ss_pred CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhh---cCCceEEeehhhhccc-----hhhhCc
Confidence 4689999976531 125799999999999987777654 4699999977533333 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 030299 145 LILAVSIQFFIYELVFCLRQLL 166 (179)
Q Consensus 145 L~~~AL~~~~~~~~~~~~~~~f 166 (179)
+-...-+++-...|+..|.+..
T Consensus 98 ~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 98 LSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred hhheehhhhhHHHHHHHHHHcC
Confidence 4433333333345556666554
No 385
>PRK07060 short chain dehydrogenase; Provisional
Probab=65.03 E-value=62 Score=25.42 Aligned_cols=76 Identities=14% Similarity=0.013 Sum_probs=49.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
++.+++=.|++ |+....+++.+.. .+..|+.++.++.. ...++.++++|+++.+...++.+..
T Consensus 8 ~~~~~lItGa~-g~iG~~~a~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 8 SGKSVLVTGAS-SGIGRACAVALAQ-----------RGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHh
Confidence 35677766655 5566665555432 14689989876521 1125678899999987666665543
Q ss_pred CCCCccEEeeCCCCC
Q 030299 116 DGCKADLVVCDGAPD 130 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~ 130 (179)
.++|+|++..+..
T Consensus 76 --~~~d~vi~~ag~~ 88 (245)
T PRK07060 76 --GAFDGLVNCAGIA 88 (245)
T ss_pred --CCCCEEEECCCCC
Confidence 4689999987643
No 386
>PRK07791 short chain dehydrogenase; Provisional
Probab=64.99 E-value=79 Score=26.13 Aligned_cols=78 Identities=14% Similarity=-0.014 Sum_probs=47.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCC---------CC------C----CCCeeEEecc
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQP---------MA------P----IEGVIQVQGD 101 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~---------~~------~----~~~v~~i~gD 101 (179)
++.++|=.|++.|.-... ++++.. ....|+.+|... .. . -..+.++.+|
T Consensus 5 ~~k~~lITGas~GIG~ai-a~~la~-----------~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 72 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAH-ALAFAA-----------EGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDD 72 (286)
T ss_pred CCCEEEEECCCchHHHHH-HHHHHH-----------CCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCC
Confidence 467888889887655444 333321 146787777653 10 0 1246678999
Q ss_pred ccchhhHHHHHhhcC--CCCccEEeeCCCCC
Q 030299 102 ITNARTAEVVIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 102 i~~~~~~~~l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+++.+..+++.+... -+.+|.++++....
T Consensus 73 v~~~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 73 IADWDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 999876555544321 14689999987643
No 387
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=64.62 E-value=37 Score=27.38 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=47.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
++.++|=.|++.| .-..+++++.. .+.+|+.+|.++-. . ...+.++++|+.+.+...++.+
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (262)
T TIGR03325 4 KGEVVLVTGGASG-LGRAIVDRFVA-----------EGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVA 71 (262)
T ss_pred CCcEEEEECCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHH
Confidence 3567777887655 44444444432 25689988876521 1 1247788999999765444443
Q ss_pred hcC--CCCccEEeeCCCC
Q 030299 114 HFD--GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~ 129 (179)
... -+.+|++++..+.
T Consensus 72 ~~~~~~g~id~li~~Ag~ 89 (262)
T TIGR03325 72 RCVAAFGKIDCLIPNAGI 89 (262)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 221 1368999998753
No 388
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=64.57 E-value=75 Score=26.49 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=42.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEE
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~V 123 (179)
+||=.| |.|-.-..+.+++.. .+.|+++|..+. .+.+|++|.+...++.+ +.++|+|
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~~------------~g~V~~~~~~~~-------~~~~Dl~d~~~~~~~~~---~~~~D~V 58 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALAP------------LGNLIALDVHST-------DYCGDFSNPEGVAETVR---KIRPDVI 58 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhhc------------cCCEEEeccccc-------cccCCCCCHHHHHHHHH---hcCCCEE
Confidence 455555 567777777776642 347999886531 34689999876555443 3468999
Q ss_pred eeCCCCC
Q 030299 124 VCDGAPD 130 (179)
Q Consensus 124 lsD~~~~ 130 (179)
++-++..
T Consensus 59 ih~Aa~~ 65 (299)
T PRK09987 59 VNAAAHT 65 (299)
T ss_pred EECCccC
Confidence 9987653
No 389
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=64.49 E-value=10 Score=29.06 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCcccHHHHHHHHHHHHH
Q 030299 93 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAVSI 151 (179)
Q Consensus 93 ~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d~~~q~~L~~~AL~ 151 (179)
.+++++++|+.+.+ ++++.||+|++.... ++..|....++-+...|+
T Consensus 26 ~~i~~~~~d~~~lp--------~~~~~fD~v~~~~~l----~~~~d~~~~l~ei~rvLk 72 (160)
T PLN02232 26 KCIEWIEGDAIDLP--------FDDCEFDAVTMGYGL----RNVVDRLRAMKEMYRVLK 72 (160)
T ss_pred CceEEEEechhhCC--------CCCCCeeEEEecchh----hcCCCHHHHHHHHHHHcC
Confidence 36899999998865 456789999985432 222344334444444443
No 390
>PRK06841 short chain dehydrogenase; Provisional
Probab=63.85 E-value=69 Score=25.46 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=48.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
++.+||=.|++.| ....+++++.. .+..|+.++.++-. ....+..+++|+++.+..+++.+
T Consensus 14 ~~k~vlItGas~~-IG~~la~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 81 (255)
T PRK06841 14 SGKVAVVTGGASG-IGHAIAELFAA-----------KGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVA 81 (255)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHH
Confidence 4668888887655 45554444431 14678888876521 11245678999999876555544
Q ss_pred hcC--CCCccEEeeCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~ 130 (179)
... -.++|.|++..+..
T Consensus 82 ~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 82 AVISAFGRIDILVNSAGVA 100 (255)
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 321 13689999987643
No 391
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=63.78 E-value=1.2e+02 Score=28.53 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CCCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++||=.|+ +|..-..+++++-. .+....|+++|..+. ...++++++.+|+++.+...++
T Consensus 6 ~~~VLVTGa-tGfIG~~lv~~Ll~---------~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 6 PKNILITGA-AGFIASHVANRLIR---------NYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH---------hCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHH
Confidence 467777664 47777777776631 011368999996431 1135789999999997654443
Q ss_pred HhhcCCCCccEEeeCCCCC
Q 030299 112 IRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~~~~~D~VlsD~~~~ 130 (179)
. ....+|+|++-++..
T Consensus 76 ~---~~~~~D~ViHlAa~~ 91 (668)
T PLN02260 76 L---ITEGIDTIMHFAAQT 91 (668)
T ss_pred H---hhcCCCEEEECCCcc
Confidence 2 224799999987653
No 392
>PRK07024 short chain dehydrogenase; Provisional
Probab=63.62 E-value=53 Score=26.38 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=47.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCeeEEeccccchhhHHHHHh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~---~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.+||=.|+ .|+....+++.+.. .+..|+.+|.++-. .+ .++.++++|+++.+...++.+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~ 70 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYAR-----------QGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAA 70 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHH
Confidence 45666676 45566665555532 14688888876521 11 167889999999876655544
Q ss_pred hcC--CCCccEEeeCCCCC
Q 030299 114 HFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~~ 130 (179)
... -+.+|++++..+..
T Consensus 71 ~~~~~~g~id~lv~~ag~~ 89 (257)
T PRK07024 71 DFIAAHGLPDVVIANAGIS 89 (257)
T ss_pred HHHHhCCCCCEEEECCCcC
Confidence 321 13589999987653
No 393
>PRK06057 short chain dehydrogenase; Provisional
Probab=63.46 E-value=20 Score=28.76 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=48.9
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
++.+||=.|++. +....+++++.. ....|+.+|.++-. .+ +..++++|+++.+..+++.+.
T Consensus 6 ~~~~vlItGasg-gIG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 6 AGRVAVITGGGS-GIGLATARRLAA-----------EGATVVVGDIDPEAGKAAADEV-GGLFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHc-CCcEEEeeCCCHHHHHHHHHH
Confidence 367899899864 556655555532 14689989877531 12 235789999998765555543
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
.. ..++|+|++..+.
T Consensus 73 ~~~~~~~id~vi~~ag~ 89 (255)
T PRK06057 73 AAETYGSVDIAFNNAGI 89 (255)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 21 1368999987653
No 394
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=63.25 E-value=37 Score=27.58 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=50.5
Q ss_pred CCCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC------------CCCCCeeEEeccccchhh
Q 030299 41 GVKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM------------APIEGVIQVQGDITNART 107 (179)
Q Consensus 41 ~g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~------------~~~~~v~~i~gDi~~~~~ 107 (179)
.++++|=.|++ .+|.-..+++++.. .+..|+.++..+. +....+..+++|+++.+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 73 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-----------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQ 73 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-----------CCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHH
Confidence 46788999995 67888877777642 1456665543221 011245678999999887
Q ss_pred HHHHHhhcC--CCCccEEeeCCCC
Q 030299 108 AEVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
.+++.+... -+.+|+++++.+.
T Consensus 74 v~~~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 74 IEETFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccc
Confidence 665554432 1369999998764
No 395
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=63.19 E-value=90 Score=26.15 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.+||=.|+. ||....+++.+.. .+..|+.++.++.. +...+.++++|+++.+..++
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 72 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAK-----------RGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRR 72 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHH
Confidence 35678877876 4555555554432 14678888765421 11357888999999876655
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+.+. ..++|+|+++.+.
T Consensus 73 ~~~~~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 73 FVDDFRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHHHHHhCCCccEEEECCcc
Confidence 554322 2368999999864
No 396
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=62.97 E-value=25 Score=28.78 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=43.9
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-------C---CCCCeeEEeccccchhhHHHHHhhcCCCC
Q 030299 50 AAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-------A---PIEGVIQVQGDITNARTAEVVIRHFDGCK 119 (179)
Q Consensus 50 agpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-------~---~~~~v~~i~gDi~~~~~~~~l~~~~~~~~ 119 (179)
.|+|....++++++-.. +....|+++|..+. . ..+++.++.+|+++.+...++.+. ..
T Consensus 6 GatG~iG~~l~~~l~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~ 73 (317)
T TIGR01181 6 GGAGFIGSNFVRYILNE---------HPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTE---HQ 73 (317)
T ss_pred cCCchHHHHHHHHHHHh---------CCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhh---cC
Confidence 36788888887766310 11257888875321 1 123688899999998766555432 25
Q ss_pred ccEEeeCCCC
Q 030299 120 ADLVVCDGAP 129 (179)
Q Consensus 120 ~D~VlsD~~~ 129 (179)
+|+|++-.+.
T Consensus 74 ~d~vi~~a~~ 83 (317)
T TIGR01181 74 PDAVVHFAAE 83 (317)
T ss_pred CCEEEEcccc
Confidence 8999987764
No 397
>PRK05875 short chain dehydrogenase; Provisional
Probab=62.84 E-value=22 Score=28.91 Aligned_cols=75 Identities=9% Similarity=0.021 Sum_probs=48.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C---CCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P---IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~---~~~v~~i~gDi~~~~~~~ 109 (179)
+.++|=.|++ |+....+++++.. .+..|++++.++-. . ..++.++.+|+++.+...
T Consensus 7 ~k~vlItGas-g~IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~ 74 (276)
T PRK05875 7 DRTYLVTGGG-SGIGKGVAAGLVA-----------AGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVA 74 (276)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHH
Confidence 5678888865 5566666665532 14689988876421 0 135778899999987655
Q ss_pred HHHhhcC--CCCccEEeeCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGA 128 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~ 128 (179)
++.+... -.++|+|++..+
T Consensus 75 ~~~~~~~~~~~~~d~li~~ag 95 (276)
T PRK05875 75 RAVDAATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHHHHHHcCCCCEEEECCC
Confidence 4443221 136899999876
No 398
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=62.77 E-value=22 Score=32.87 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=44.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
++|+=+|+ |.+.+.+++++.. .+..|+.+|.++.. .-.|...+.||.+++++.++ ..-+
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~-----------~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~----a~i~ 480 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLA-----------AGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL----AHLD 480 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh----cCcc
Confidence 45555554 5577777777642 14579999998742 13588899999999886543 2334
Q ss_pred CccEEeeC
Q 030299 119 KADLVVCD 126 (179)
Q Consensus 119 ~~D~VlsD 126 (179)
.+|.|+..
T Consensus 481 ~a~~viv~ 488 (558)
T PRK10669 481 CARWLLLT 488 (558)
T ss_pred ccCEEEEE
Confidence 68877654
No 399
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.77 E-value=47 Score=26.28 Aligned_cols=77 Identities=19% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.++|=.| |.|+....+++.+.. .+..|+.++..+.. ...++.++.+|+++.+..++
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAR-----------EGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKA 72 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 355677667 456666666665532 14689999876521 11256678999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -.++|+|++..+.
T Consensus 73 ~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 73 MADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 444321 1368999998764
No 400
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.64 E-value=33 Score=27.93 Aligned_cols=79 Identities=9% Similarity=-0.032 Sum_probs=49.7
Q ss_pred CCCEEEEEcc-CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLga-gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~ 110 (179)
+++++|=-|+ |.+|.-..+++++.. .+..|+.++.... ........+++|+++.+..++
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 73 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACRE-----------QGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQ 73 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHH
Confidence 3567888887 467777777776642 1457776654321 012234578999999876655
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -+++|+++++.+..
T Consensus 74 ~~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 74 VFADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHHHHHhCCCcEEEECCccC
Confidence 554321 14699999998653
No 401
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.26 E-value=34 Score=27.86 Aligned_cols=77 Identities=13% Similarity=-0.037 Sum_probs=46.6
Q ss_pred CCEEEEEccCCC-hHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPG-SWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpG-g~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~----~~~~v~~i~gDi~~~~~~~~l 111 (179)
++.+|=-|++.| |....+++++.. ....|+.++.++. + .......+++|+++.+..+++
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~-----------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~ 76 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKK-----------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNL 76 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHH-----------cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHH
Confidence 567788888874 455555444431 1457777775531 0 112233568999998876666
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -+.+|+++++...
T Consensus 77 ~~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 77 FDDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred HHHHHHHcCCccEEEEcccc
Confidence 65432 1469999997653
No 402
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=62.21 E-value=40 Score=27.42 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=47.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
++.++|=.|++.|.- ..+++++.. .+..|+.+|.++.. . ..++.++++|+.+.+....
T Consensus 9 ~~k~vlVtGas~giG-~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 76 (278)
T PRK08277 9 KGKVAVITGGGGVLG-GAMAKELAR-----------AGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQ 76 (278)
T ss_pred CCCEEEEeCCCchHH-HHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 356778778775544 444444421 14678888876521 1 1247788999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+++|+|++..+.
T Consensus 77 ~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 77 ARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 444321 1378999998763
No 403
>PRK07478 short chain dehydrogenase; Provisional
Probab=62.10 E-value=41 Score=26.88 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=47.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l 111 (179)
+.++|=.|++.| .-..+++.+.. .+..|+.++.++.. . ...+.++.+|+++.+..+++
T Consensus 6 ~k~~lItGas~g-iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 6 GKVAIITGASSG-IGRAAAKLFAR-----------EGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 557787777755 44444444431 14678888876521 0 12477889999998765555
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -+.+|.+++..+.
T Consensus 74 ~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 74 VALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 54321 1368999998764
No 404
>PRK06181 short chain dehydrogenase; Provisional
Probab=62.00 E-value=42 Score=26.92 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=47.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.+||=.| |.|+....+++.+.. .+..|++++.++.. . ..++.++.+|+++.+...++.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~-----------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 69 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLAR-----------AGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLI 69 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHH
Confidence 3566555 456666666655432 24689999977521 1 135778899999987655554
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -..+|.|++....
T Consensus 70 ~~~~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 70 EAAVARFGGIDILVNNAGI 88 (263)
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 4321 1368999998754
No 405
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.96 E-value=34 Score=28.21 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=50.5
Q ss_pred CCEEEEEccC-CChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAA-PGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgag-pGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
++++|=.|++ .+|.-..+++++.. .+.+|+.++.+.. +.+..+..+++|+++.+..+++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~-----------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRA-----------AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHH
Confidence 5678888987 47777777777642 2467776654321 1123355789999998876666
Q ss_pred HhhcCC--CCccEEeeCCCC
Q 030299 112 IRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~--~~~D~VlsD~~~ 129 (179)
.+...+ +.+|+++++...
T Consensus 79 ~~~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 79 FETLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHHHhcCCCcEEEECCcc
Confidence 554321 368999998764
No 406
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=61.92 E-value=21 Score=32.98 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=57.9
Q ss_pred HHhHHHHh-CCCCCCC-EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCee
Q 030299 29 LLQIDEEF-NIFEGVK-RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVI 96 (179)
Q Consensus 29 L~eid~~~-~ll~~g~-~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~ 96 (179)
+..+...+ ..+++-. +++-+|||---.++.+.+-. ...|+.+|+|+.. ..+-..
T Consensus 34 ~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G--------------~~dI~~iD~S~V~V~~m~~~~~~~~~~~~ 99 (482)
T KOG2352|consen 34 LLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNG--------------FEDITNIDSSSVVVAAMQVRNAKERPEMQ 99 (482)
T ss_pred HHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcC--------------CCCceeccccHHHHHHHHhccccCCcceE
Confidence 44443332 3456777 99999999998888876642 4679999999831 234567
Q ss_pred EEeccccchhhHHHHHhhcCCCCccEEeeCCCCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 131 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~ 131 (179)
+...|++... |+++.||+|+.=|.-++
T Consensus 100 ~~~~d~~~l~--------fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 100 MVEMDMDQLV--------FEDESFDIVIDKGTLDA 126 (482)
T ss_pred EEEecchhcc--------CCCcceeEEEecCcccc
Confidence 8889998875 67789999988765444
No 407
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.89 E-value=32 Score=28.36 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=49.1
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~----~~~~v~~i~gDi~~~~~~~~ 110 (179)
+++++|=.|++. +|.-..+++++.. .+..|+.++.+.. + .......+++|+++.+..++
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-----------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~ 74 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-----------QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDA 74 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-----------CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHH
Confidence 467889999986 3566665555532 1467777765431 0 11223467999999876655
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+.+|+++++...
T Consensus 75 ~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 75 VFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHHhCCCCEEEECCcc
Confidence 554432 1479999998764
No 408
>PRK12744 short chain dehydrogenase; Provisional
Probab=61.87 E-value=46 Score=26.68 Aligned_cols=76 Identities=20% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------------CCCCeeEEeccccchhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------------PIEGVIQVQGDITNART 107 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------------~~~~v~~i~gDi~~~~~ 107 (179)
+.+||=.|++. +....+++.+.. .+..|+.++.++.. ....+.++++|+++.+.
T Consensus 8 ~k~vlItGa~~-gIG~~~a~~l~~-----------~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~ 75 (257)
T PRK12744 8 GKVVLIAGGAK-NLGGLIARDLAA-----------QGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAA 75 (257)
T ss_pred CcEEEEECCCc-hHHHHHHHHHHH-----------CCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHH
Confidence 56788778655 455555555432 13566666544321 01257788999999887
Q ss_pred HHHHHhhcC--CCCccEEeeCCCC
Q 030299 108 AEVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 108 ~~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
.+++.+... -+++|++++..+.
T Consensus 76 ~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 76 VEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHHHHHhhCCCCEEEECCcc
Confidence 666554321 1368999998764
No 409
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=61.81 E-value=45 Score=26.39 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------C-CCCeeEEeccccchhhHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------P-IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~-~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.+.+||=.|++. +....+++++.. .+..|+.++.++.. . -..+.++++|+++.+....+.
T Consensus 4 ~~k~vlItGas~-gIG~~ia~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (248)
T TIGR01832 4 EGKVALVTGANT-GLGQGIAVGLAE-----------AGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALV 71 (248)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHH-----------CCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 356788888864 456655555532 14689988865421 1 134778899999987655544
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+.+|.|++..+.
T Consensus 72 ~~~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 72 DSAVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 4321 1368999998754
No 410
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=61.80 E-value=48 Score=24.98 Aligned_cols=64 Identities=23% Similarity=0.329 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--CCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 51 gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
|+|.....+++.+-. ....|+++=-++.. ...+++.+++|+.+.+...+. +. ++|.|++-..
T Consensus 6 atG~vG~~l~~~L~~-----------~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~a---l~--~~d~vi~~~~ 69 (183)
T PF13460_consen 6 ATGFVGRALAKQLLR-----------RGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAA---LK--GADAVIHAAG 69 (183)
T ss_dssp TTSHHHHHHHHHHHH-----------TTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHH---HT--TSSEEEECCH
T ss_pred CCChHHHHHHHHHHH-----------CCCEEEEEecCchhcccccccccceeeehhhhhhhhh---hh--hcchhhhhhh
Confidence 577777777776532 14789988877653 247999999999998654443 33 5899999775
Q ss_pred CC
Q 030299 129 PD 130 (179)
Q Consensus 129 ~~ 130 (179)
+.
T Consensus 70 ~~ 71 (183)
T PF13460_consen 70 PP 71 (183)
T ss_dssp ST
T ss_pred hh
Confidence 43
No 411
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=61.29 E-value=9.6 Score=32.97 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=35.6
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CC-CCeeEEec----cccch
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PI-EGVIQVQG----DITNA 105 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~-~~v~~i~g----Di~~~ 105 (179)
-++||||+|....--.|..+.. ++.++|.|+.+.. .+ ..++.++. +|++.
T Consensus 104 v~glDIGTGAscIYpLLg~~~~-------------~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLY-------------GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH---------------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT
T ss_pred eEeecCCccHHHHHHHHhhhhc-------------CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh
Confidence 4789999999977665555543 4799999999841 12 23555432 23321
Q ss_pred hhHHHHHhhcCCCCccEEeeCCCCCCCCCC
Q 030299 106 RTAEVVIRHFDGCKADLVVCDGAPDVTGLH 135 (179)
Q Consensus 106 ~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~ 135 (179)
- . ..++.||+.+|+.++-.+..+
T Consensus 171 i-----~--~~~e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 171 I-----I--QPNERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp S-----T--T--S-EEEEEE-----SS---
T ss_pred h-----h--cccceeeEEecCCccccChhh
Confidence 1 1 123589999999877555544
No 412
>PRK08589 short chain dehydrogenase; Validated
Probab=61.14 E-value=39 Score=27.56 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----C----CCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P----IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~----~~~v~~i~gDi~~~~~~~~l 111 (179)
++.++|=.|++.|. -..+++++.. .+..|+.++.++.. . ..++..+++|+++.+..+++
T Consensus 5 ~~k~vlItGas~gI-G~aia~~l~~-----------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 72 (272)
T PRK08589 5 ENKVAVITGASTGI-GQASAIALAQ-----------EGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDF 72 (272)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHH-----------CCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHH
Confidence 35677777776654 4444444432 15789988876310 0 12477889999998765555
Q ss_pred HhhcC--CCCccEEeeCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~ 130 (179)
.+... -+..|+++++.+..
T Consensus 73 ~~~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 73 ASEIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHHHcCCcCEEEECCCCC
Confidence 54322 13689999988643
No 413
>PRK12367 short chain dehydrogenase; Provisional
Probab=61.01 E-value=89 Score=25.41 Aligned_cols=71 Identities=6% Similarity=0.021 Sum_probs=43.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----CCCeeEEeccccchhhHHHHHhhcC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+.++|-.|++-|.-... ++++.. .+..|+.++.++... ......+++|+++.+...+ .+
T Consensus 14 ~k~~lITGas~gIG~al-a~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~- 77 (245)
T PRK12367 14 GKRIGITGASGALGKAL-TKAFRA-----------KGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDK---QL- 77 (245)
T ss_pred CCEEEEEcCCcHHHHHH-HHHHHH-----------CCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHH---hc-
Confidence 56788888776655444 443321 146888888765210 1123567899988764332 23
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
+.+|+++++.+.
T Consensus 78 -~~iDilVnnAG~ 89 (245)
T PRK12367 78 -ASLDVLILNHGI 89 (245)
T ss_pred -CCCCEEEECCcc
Confidence 359999998864
No 414
>PRK07890 short chain dehydrogenase; Provisional
Probab=60.89 E-value=72 Score=25.32 Aligned_cols=77 Identities=17% Similarity=0.050 Sum_probs=48.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++++|+=.|++.| ....+++.+.. .+..|+.+|.++-. .-.++.++.+|+++.+..++
T Consensus 4 ~~k~vlItGa~~~-IG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 71 (258)
T PRK07890 4 KGKVVVVSGVGPG-LGRTLAVRAAR-----------AGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCAN 71 (258)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHH
Confidence 4567887777554 55555554432 24689999877621 01357788999999876554
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+.+|.|++....
T Consensus 72 ~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 72 LVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHcCCccEEEECCcc
Confidence 443221 1368999998754
No 415
>PRK06701 short chain dehydrogenase; Provisional
Probab=60.85 E-value=96 Score=25.72 Aligned_cols=76 Identities=12% Similarity=0.064 Sum_probs=47.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-----------CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-----------IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-----------~~~v~~i~gDi~~~~~~~~ 110 (179)
+.++|=.|++.| ....++.++.. .+..|+.++.++... -..+.++.+|+++.+..++
T Consensus 46 ~k~iLItGasgg-IG~~la~~l~~-----------~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 46 GKVALITGGDSG-IGRAVAVLFAK-----------EGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHH-----------CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 567888887555 44444444431 146788887764210 1247788999999876655
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -..+|+|++....
T Consensus 114 ~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 114 AVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 544321 1368999988753
No 416
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=60.79 E-value=10 Score=33.47 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=19.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLY 64 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~ 64 (179)
-+..+|+|+|.|.-+..+....+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp 200 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP 200 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC
Confidence 37889999999999999888654
No 417
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=60.79 E-value=46 Score=28.95 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=43.0
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
|+=||| |...+.+++.+... .+...|+..|.++.+ ...++..++.|+.+.+.++++.+
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~---------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--- 66 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARR---------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--- 66 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCT---------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT---
T ss_pred CEEEcC--cHHHHHHHHHHhcC---------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh---
Confidence 455777 77777776665321 011278999988742 34689999999999876655542
Q ss_pred CCCccEEeeCCCCC
Q 030299 117 GCKADLVVCDGAPD 130 (179)
Q Consensus 117 ~~~~D~VlsD~~~~ 130 (179)
..|+|++-..|.
T Consensus 67 --~~dvVin~~gp~ 78 (386)
T PF03435_consen 67 --GCDVVINCAGPF 78 (386)
T ss_dssp --TSSEEEE-SSGG
T ss_pred --cCCEEEECCccc
Confidence 459999876653
No 418
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=60.66 E-value=21 Score=30.51 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=37.0
Q ss_pred CCEEEEEccCCChHHHHHHH-HhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C---CCCeeEEeccccchhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSR-KLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P---IEGVIQVQGDITNART 107 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~-~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~---~~~v~~i~gDi~~~~~ 107 (179)
..+|+=||+||==.|..... +.+. +..|+++|+.|.. . -.+++|+.+|+.+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~------------~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~ 188 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGP------------GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY 188 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--------------EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G
T ss_pred cceEEEEcCCCcchHHHHHHHHhCC------------CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc
Confidence 35999999999988876554 3332 4689999999941 1 2478999999987532
Q ss_pred HHHHHhhcCCCCccEEeeCCC
Q 030299 108 AEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 108 ~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.-..||+|+.-.-
T Consensus 189 --------dl~~~DvV~lAal 201 (276)
T PF03059_consen 189 --------DLKEYDVVFLAAL 201 (276)
T ss_dssp --------G----SEEEE-TT
T ss_pred --------ccccCCEEEEhhh
Confidence 1247999987553
No 419
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=60.63 E-value=72 Score=25.50 Aligned_cols=77 Identities=16% Similarity=0.082 Sum_probs=47.3
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.+||=.|++.| ....+++++.. .+..|+.++..+.. . -..+.++.+|+++.+..++
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~-----------~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~ 77 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFAT-----------AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSA 77 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 3678999997765 44444444321 14578877765421 0 1246678999999876555
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+.+|.|++..+.
T Consensus 78 ~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 78 LADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHHHHcCCCCEEEECCCC
Confidence 444321 1368999998764
No 420
>PRK07576 short chain dehydrogenase; Provisional
Probab=60.46 E-value=90 Score=25.26 Aligned_cols=76 Identities=12% Similarity=0.052 Sum_probs=47.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~ 110 (179)
++.++|=.|++ |+....+++.+.. .+..|+.+|.++-. ...++.++.+|+++.+..++
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 75 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFAR-----------AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEA 75 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHH
Confidence 46688888864 4455544444432 14689999876521 11246678999999876555
Q ss_pred HHhhcC--CCCccEEeeCCC
Q 030299 111 VIRHFD--GCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~ 128 (179)
+.+... -.++|.|++..+
T Consensus 76 ~~~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 76 AFAQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 544321 136899998764
No 421
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=60.40 E-value=28 Score=28.62 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=28.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
-+|+++|+|.|..+..++..+... .+ .-.....++-|++||.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~---~p--~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKF---SP--EVYKRLRYHIVEISPY 61 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCT---TH--HHHTTCEEEEE-TTCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHh---Ch--hhhhcceEEEEcCCHH
Confidence 589999999999999988877520 00 0011357888999984
No 422
>PRK06482 short chain dehydrogenase; Provisional
Probab=60.29 E-value=80 Score=25.57 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=48.3
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhhcC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+||=.|| .|+....+++++.. .+..|++++.++.. ...++.++++|+++.+...++.....
T Consensus 4 ~vlVtGa-sg~IG~~la~~L~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 4 TWFITGA-SSGFGRGMTERLLA-----------RGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred EEEEecC-CCHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHH
Confidence 5665565 56777777666532 14678888766521 12468889999999876555443211
Q ss_pred --CCCccEEeeCCCCCC
Q 030299 117 --GCKADLVVCDGAPDV 131 (179)
Q Consensus 117 --~~~~D~VlsD~~~~~ 131 (179)
..++|.|++..+...
T Consensus 72 ~~~~~id~vi~~ag~~~ 88 (276)
T PRK06482 72 AALGRIDVVVSNAGYGL 88 (276)
T ss_pred HHcCCCCEEEECCCCCC
Confidence 136899999876543
No 423
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.17 E-value=41 Score=26.72 Aligned_cols=74 Identities=12% Similarity=-0.021 Sum_probs=47.5
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+||=.| |.|+....+++.+.. .+..|+.+|..+.. ...++.++++|+++.+...++.
T Consensus 4 ~vlItG-~sg~iG~~la~~L~~-----------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (256)
T PRK12745 4 VALVTG-GRRGIGLGIARALAA-----------AGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAML 71 (256)
T ss_pred EEEEeC-CCchHHHHHHHHHHH-----------CCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 466556 567777777666542 14689988865421 1135788999999987655555
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+.+|.|++..+.
T Consensus 72 ~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 72 DAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred HHHHHhcCCCCEEEECCcc
Confidence 4331 1368999998753
No 424
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.15 E-value=29 Score=28.25 Aligned_cols=77 Identities=9% Similarity=-0.039 Sum_probs=48.9
Q ss_pred CCEEEEEcc-CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------CCCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCA-APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------APIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLga-gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~~~~~v~~i~gDi~~~~~~~~l 111 (179)
++++|=.|+ |.+|.-..+++++.. ....|+.++.... +.......+++|+++.+..+++
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 74 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKR-----------EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDAL 74 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHH-----------CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHH
Confidence 567888898 577777777766642 1456776653211 1122344678999998866655
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -+.+|+++++...
T Consensus 75 ~~~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 75 FASLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred HHHHHHHhCCCcEEEEcccc
Confidence 54432 1479999998754
No 425
>PRK09134 short chain dehydrogenase; Provisional
Probab=59.88 E-value=89 Score=25.00 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=47.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------CCCCeeEEeccccchhhHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~~~~v~~i~gDi~~~~~~~ 109 (179)
.++++|=.|++ |+....+++++.. .+..|+.++..... ....+.++++|+++.+...
T Consensus 8 ~~k~vlItGas-~giG~~la~~l~~-----------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 75 (258)
T PRK09134 8 APRAALVTGAA-RRIGRAIALDLAA-----------HGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVR 75 (258)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHH-----------CCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 35678888876 5565666655532 14567766543211 1235778899999987666
Q ss_pred HHHhhcC--CCCccEEeeCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~ 129 (179)
++.+... -..+|+|++..+.
T Consensus 76 ~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 76 ALVARASAALGPITLLVNNASL 97 (258)
T ss_pred HHHHHHHHHcCCCCEEEECCcC
Confidence 5554321 1368999999864
No 426
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=59.85 E-value=7.5 Score=34.80 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.0
Q ss_pred CCEEEEEccCCChHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVL 59 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l 59 (179)
.-+|+|+|||+|..|..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 558999999999888654
No 427
>PRK08226 short chain dehydrogenase; Provisional
Probab=59.82 E-value=89 Score=24.98 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=49.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+.++|=.|++ |+....+++++-. .+..|+.++.++-. ....+.++++|+++.+..+++.
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~-----------~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 73 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFAR-----------HGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAI 73 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHH
Confidence 5678877775 5566666665532 24678888876520 1124678899999987665554
Q ss_pred hhcC--CCCccEEeeCCCCC
Q 030299 113 RHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~~ 130 (179)
+... -+..|.|++..+..
T Consensus 74 ~~~~~~~~~id~vi~~ag~~ 93 (263)
T PRK08226 74 KRAKEKEGRIDILVNNAGVC 93 (263)
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 4321 13689999988643
No 428
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=59.79 E-value=37 Score=27.17 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHhhcC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIRHFD 116 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~~~~ 116 (179)
+|+=.|++- +....+++++.. .+..|+.++.++-. . ..++.++.+|+++.+..+++.+...
T Consensus 2 ~vlItGasg-~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~ 69 (248)
T PRK10538 2 IVLVTGATA-GFGECITRRFIQ-----------QGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLP 69 (248)
T ss_pred EEEEECCCc-hHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHH
Confidence 345555544 445555555432 24689999887631 1 1367788999999876655544322
Q ss_pred --CCCccEEeeCCCC
Q 030299 117 --GCKADLVVCDGAP 129 (179)
Q Consensus 117 --~~~~D~VlsD~~~ 129 (179)
-+++|.|++..+.
T Consensus 70 ~~~~~id~vi~~ag~ 84 (248)
T PRK10538 70 AEWRNIDVLVNNAGL 84 (248)
T ss_pred HHcCCCCEEEECCCc
Confidence 1368999987753
No 429
>PRK08265 short chain dehydrogenase; Provisional
Probab=59.55 E-value=92 Score=25.10 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=48.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.++|=.|++. +....+++.+.. .+..|+.+|.++.. . ...+.++++|+++.+..+++.+.
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVA-----------AGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 56788778655 455555554432 14689988877631 1 13578889999998765555443
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
.. -+..|+++++...
T Consensus 74 ~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 21 1368999998764
No 430
>PRK05884 short chain dehydrogenase; Provisional
Probab=59.51 E-value=34 Score=27.16 Aligned_cols=73 Identities=15% Similarity=0.065 Sum_probs=46.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
+++=.||+.| .-..+++.+.. .+..|+.++.++.+ ...++..+++|+++.+..+++.+.+. .
T Consensus 2 ~vlItGas~g-iG~~ia~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~-~ 68 (223)
T PRK05884 2 EVLVTGGDTD-LGRTIAEGFRN-----------DGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFP-H 68 (223)
T ss_pred eEEEEeCCch-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHh-h
Confidence 4555666654 44545554431 14688888876521 11256788999999887777666544 2
Q ss_pred CccEEeeCCCC
Q 030299 119 KADLVVCDGAP 129 (179)
Q Consensus 119 ~~D~VlsD~~~ 129 (179)
.+|++++...+
T Consensus 69 ~id~lv~~ag~ 79 (223)
T PRK05884 69 HLDTIVNVPAP 79 (223)
T ss_pred cCcEEEECCCc
Confidence 68999987653
No 431
>PRK06139 short chain dehydrogenase; Provisional
Probab=59.49 E-value=79 Score=27.09 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=49.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l 111 (179)
+.+||=.|++. |.-..+++++.. .+..|+.++.++.. . -..+.++.+|+++.+..+++
T Consensus 7 ~k~vlITGAs~-GIG~aia~~la~-----------~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 74 (330)
T PRK06139 7 GAVVVITGASS-GIGQATAEAFAR-----------RGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKAL 74 (330)
T ss_pred CCEEEEcCCCC-HHHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHH
Confidence 56778777764 455555554432 14678888876521 1 12466789999998866665
Q ss_pred HhhcC--CCCccEEeeCCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDVT 132 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~~ 132 (179)
.+... .+++|+++++......
T Consensus 75 ~~~~~~~~g~iD~lVnnAG~~~~ 97 (330)
T PRK06139 75 ATQAASFGGRIDVWVNNVGVGAV 97 (330)
T ss_pred HHHHHHhcCCCCEEEECCCcCCC
Confidence 54321 1469999998865433
No 432
>PRK07578 short chain dehydrogenase; Provisional
Probab=59.31 E-value=61 Score=24.88 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=44.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEE
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~V 123 (179)
++|=.|++ ||....+++++.. . ..|+.++.++- .+++|+++.+..+++.+.+ +++|.|
T Consensus 2 ~vlItGas-~giG~~la~~l~~-----------~-~~vi~~~r~~~-------~~~~D~~~~~~~~~~~~~~--~~id~l 59 (199)
T PRK07578 2 KILVIGAS-GTIGRAVVAELSK-----------R-HEVITAGRSSG-------DVQVDITDPASIRALFEKV--GKVDAV 59 (199)
T ss_pred eEEEEcCC-cHHHHHHHHHHHh-----------c-CcEEEEecCCC-------ceEecCCChHHHHHHHHhc--CCCCEE
Confidence 46677764 5666666666642 1 57888776532 4689999988877777665 368999
Q ss_pred eeCCCC
Q 030299 124 VCDGAP 129 (179)
Q Consensus 124 lsD~~~ 129 (179)
++....
T Consensus 60 v~~ag~ 65 (199)
T PRK07578 60 VSAAGK 65 (199)
T ss_pred EECCCC
Confidence 998764
No 433
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.61 E-value=45 Score=27.79 Aligned_cols=77 Identities=12% Similarity=0.168 Sum_probs=48.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+.+||=.|++.| ....+++.+.. .+..|+.++.++.. ....+.++++|+++.+...++
T Consensus 40 ~k~vlItGasgg-IG~~la~~La~-----------~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~ 107 (293)
T PRK05866 40 GKRILLTGASSG-IGEAAAEQFAR-----------RGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDAL 107 (293)
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 467888887654 55555554431 14689988877521 012466889999998766665
Q ss_pred HhhcC--CCCccEEeeCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~ 130 (179)
.+... -+.+|+|++..+..
T Consensus 108 ~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 108 VADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 55321 13689999987543
No 434
>PRK08303 short chain dehydrogenase; Provisional
Probab=58.43 E-value=61 Score=27.36 Aligned_cols=75 Identities=16% Similarity=0.061 Sum_probs=47.1
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC---------C----------CC-CCeeEEec
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM---------A----------PI-EGVIQVQG 100 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~---------~----------~~-~~v~~i~g 100 (179)
.+.++|-.|++.| .-..+++++.. .+..|+.++.+.. + .. ..+.++++
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~-----------~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGA-----------AGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQV 74 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH-----------CCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEc
Confidence 3678888897766 44444454431 1468888876521 0 01 13667899
Q ss_pred cccchhhHHHHHhhcCC--CCccEEeeCC
Q 030299 101 DITNARTAEVVIRHFDG--CKADLVVCDG 127 (179)
Q Consensus 101 Di~~~~~~~~l~~~~~~--~~~D~VlsD~ 127 (179)
|+++.+..+++.+...+ +..|+++++.
T Consensus 75 Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 75 DHLVPEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred CCCCHHHHHHHHHHHHHHcCCccEEEECC
Confidence 99998766655543211 3689999986
No 435
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.32 E-value=39 Score=27.93 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=50.3
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----CCCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----PIEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~----~~~~v~~i~gDi~~~~~~~~ 110 (179)
.+++||=.|++. +|.-..+++++.. .+..|+.++.+.. + ...+-..+++|+++.+..++
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~-----------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE-----------QGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH-----------CCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 356888889874 5677766666542 1467887776531 1 11111467999999887666
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+.+... -+.+|+++++...
T Consensus 73 ~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 73 LAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHHHHHcCCCCEEEECCcc
Confidence 655432 1479999998764
No 436
>PRK08324 short chain dehydrogenase; Validated
Probab=57.79 E-value=82 Score=29.92 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC---CCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI---EGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~---~~v~~i~gDi~~~~~~~~l 111 (179)
+|++||=.|++ |+....+++.+.. .+..|+.+|.++-. .+ .++.++++|+++.+..+++
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~-----------~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~ 488 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAA-----------EGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAA 488 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHH-----------CcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHH
Confidence 36788887765 4455555554432 14689999987631 11 2678889999998765555
Q ss_pred HhhcC--CCCccEEeeCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~ 131 (179)
.+... .+++|+|++..+...
T Consensus 489 ~~~~~~~~g~iDvvI~~AG~~~ 510 (681)
T PRK08324 489 FEEAALAFGGVDIVVSNAGIAI 510 (681)
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 44321 136999999876443
No 437
>PRK08628 short chain dehydrogenase; Provisional
Probab=57.52 E-value=96 Score=24.68 Aligned_cols=77 Identities=16% Similarity=0.016 Sum_probs=47.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~~~~v~~i~gDi~~~~~~~~l 111 (179)
++.++|=.|++ |+....+++.+.. ....|+.++.++-. ...++.++.+|+++.+..+++
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAE-----------EGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDA 73 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH-----------cCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 35577777875 5555555555432 14567777665521 123577889999998765554
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -+++|.|++....
T Consensus 74 ~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 74 VEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHhcCCCCEEEECCcc
Confidence 44321 1368999998763
No 438
>PRK09242 tropinone reductase; Provisional
Probab=57.10 E-value=97 Score=24.70 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=47.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------C--CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------P--IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~--~~~v~~i~gDi~~~~~~ 108 (179)
.+.++|=.|++.| ....+++++.. .+..|+.++.++.. . ...+.++++|+++.+..
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~ 75 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLG-----------LGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDR 75 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHH
Confidence 4678888888655 44444444432 14678888876521 1 12467789999998765
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+++.+... -+++|.|++....
T Consensus 76 ~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 76 RAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55444321 1368999988764
No 439
>PRK07035 short chain dehydrogenase; Provisional
Probab=57.05 E-value=52 Score=26.17 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=46.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+.+||=.|++.|.-...+ +++.. .+..|+.++.++-. ....+.++++|+.+.+..+++
T Consensus 8 ~k~vlItGas~gIG~~l~-~~l~~-----------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 75 (252)
T PRK07035 8 GKIALVTGASRGIGEAIA-KLLAQ-----------QGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDAL 75 (252)
T ss_pred CCEEEEECCCcHHHHHHH-HHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 457787888766544443 33321 14689999976521 012467889999998765544
Q ss_pred HhhcC--CCCccEEeeCCC
Q 030299 112 IRHFD--GCKADLVVCDGA 128 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~ 128 (179)
.+... -+++|+|++..+
T Consensus 76 ~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 76 FAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHcCCCCEEEECCC
Confidence 43321 135899998775
No 440
>PRK09291 short chain dehydrogenase; Provisional
Probab=56.67 E-value=78 Score=25.10 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=45.9
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~ 112 (179)
.+||=.||+ |+....+++.+.. .+..|++++.++.. ...++.++++|+++.+...+..
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLAR-----------KGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAA 70 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHh
Confidence 467777764 5566655555432 14688888765421 1235788899999987654432
Q ss_pred hhcCCCCccEEeeCCCCC
Q 030299 113 RHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~~ 130 (179)
..++|+|+++....
T Consensus 71 ----~~~id~vi~~ag~~ 84 (257)
T PRK09291 71 ----EWDVDVLLNNAGIG 84 (257)
T ss_pred ----cCCCCEEEECCCcC
Confidence 23799999987644
No 441
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.64 E-value=28 Score=31.30 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=40.0
Q ss_pred HHHhCCC-CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEecc
Q 030299 33 DEEFNIF-EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGD 101 (179)
Q Consensus 33 d~~~~ll-~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gD 101 (179)
.+..+++ .++..+++.|||-|-+|.|++.-.+.+ +...++-+|-.... +.+-++-++.|
T Consensus 173 lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~----------~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riD 242 (420)
T KOG2811|consen 173 LEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQIQ----------NVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRID 242 (420)
T ss_pred HHhccccCCCcceEEEecCCchHHHHHHHHHhccc----------cEEEEEeecccchhhhhhhhhhccCcchhheeEee
Confidence 3444444 456889999999999999999877531 11222335554421 12345666888
Q ss_pred ccchh
Q 030299 102 ITNAR 106 (179)
Q Consensus 102 i~~~~ 106 (179)
|.|..
T Consensus 243 I~dLk 247 (420)
T KOG2811|consen 243 IEDLK 247 (420)
T ss_pred HHhcC
Confidence 88764
No 442
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=56.48 E-value=1e+02 Score=24.64 Aligned_cols=77 Identities=21% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-C--------CCCCeeEEeccccchhhHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-A--------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-~--------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.+.+||=.|++.| ....+++++.. .+..|+.++.... + ....+.++++|+++.+..+++
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 81 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAK-----------AGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKV 81 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHH-----------CCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 4678888888765 44444444421 1467777776531 1 123577889999998765555
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -+.+|.+++..+.
T Consensus 82 ~~~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 82 VKEALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 44321 1368999998754
No 443
>PRK13699 putative methylase; Provisional
Probab=56.34 E-value=16 Score=29.94 Aligned_cols=49 Identities=16% Similarity=0.028 Sum_probs=33.5
Q ss_pred hhcHHhHHHHh-C-CCCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 26 AFKLLQIDEEF-N-IFEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 26 a~KL~eid~~~-~-ll~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+-|-.++.+++ . ..++|+.|||--||.|.-...+ .+.+ -..+|+|+++.
T Consensus 146 ~~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa-~~~~--------------r~~~g~e~~~~ 196 (227)
T PRK13699 146 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAA-LQSG--------------RRYIGIELLEQ 196 (227)
T ss_pred CCCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHH-HHcC--------------CCEEEEecCHH
Confidence 44445554443 1 2378999999999999755554 4543 57999999983
No 444
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.93 E-value=93 Score=27.52 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=48.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCC-------CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAP-------IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~-------~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
++.++|=.|++ |+....+++.+.. ...+|+.+|...... -.+...+++|+++.+..+++.+
T Consensus 209 ~g~~vlItGas-ggIG~~la~~l~~-----------~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 276 (450)
T PRK08261 209 AGKVALVTGAA-RGIGAAIAEVLAR-----------DGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAE 276 (450)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHH-----------CCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 35678888865 4455555554432 256899998754210 1245678999999877666655
Q ss_pred hcC--CCCccEEeeCCCC
Q 030299 114 HFD--GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~ 129 (179)
... ..++|.|++....
T Consensus 277 ~~~~~~g~id~vi~~AG~ 294 (450)
T PRK08261 277 HLAERHGGLDIVVHNAGI 294 (450)
T ss_pred HHHHhCCCCCEEEECCCc
Confidence 432 1368999998764
No 445
>PRK05855 short chain dehydrogenase; Validated
Probab=55.88 E-value=1.1e+02 Score=27.34 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+.++|=.|++ ||....+++++.. .+..|+.++.++-. .-.++.++++|+++.+..+++
T Consensus 315 ~~~~lv~G~s-~giG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 315 GKLVVVTGAG-SGIGRETALAFAR-----------EGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred CCEEEEECCc-CHHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 4577777774 5555555555532 24678888877521 013577889999998876666
Q ss_pred HhhcC--CCCccEEeeCCCCCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAPDVTG 133 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~~~~g 133 (179)
.+... .+.+|+|+++.+....+
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~~~~~ 406 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGIGMAG 406 (582)
T ss_pred HHHHHHhcCCCcEEEECCccCCCC
Confidence 55432 24689999998764433
No 446
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=55.67 E-value=3.8 Score=35.76 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=54.4
Q ss_pred hHHHHhCCC---CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C------CCCee---
Q 030299 31 QIDEEFNIF---EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P------IEGVI--- 96 (179)
Q Consensus 31 eid~~~~ll---~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~------~~~v~--- 96 (179)
++-++..++ -.+..|+||=||-|.||.-.+=+.+ ...|+|+|.+|.. . ..||.
T Consensus 181 N~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~ag-------------Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~ 247 (351)
T KOG1227|consen 181 NIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAG-------------AKTVFACEWNPWSVEALRRNAEANNVMDRC 247 (351)
T ss_pred cHHHHHHhhhcccccchhhhhhcccceEEeehhhccC-------------ccEEEEEecCHHHHHHHHHHHHhcchHHHH
Confidence 444555443 3478999999999999983333333 4789999999942 1 12221
Q ss_pred -EEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCc
Q 030299 97 -QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD 136 (179)
Q Consensus 97 -~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~ 136 (179)
.+.||-+... +....|.|-.-+-|+..+.|.
T Consensus 248 ~i~~gd~R~~~---------~~~~AdrVnLGLlPSse~~W~ 279 (351)
T KOG1227|consen 248 RITEGDNRNPK---------PRLRADRVNLGLLPSSEQGWP 279 (351)
T ss_pred HhhhccccccC---------ccccchheeeccccccccchH
Confidence 2234433321 235689999999999988874
No 447
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=54.87 E-value=12 Score=32.63 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=15.1
Q ss_pred CCCEEEEEccCCChHHHHHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSR 61 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~ 61 (179)
+.-+|+|+||+.|.-|..+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHHH
Confidence 445899999999999986544
No 448
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=54.86 E-value=35 Score=29.15 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=38.3
Q ss_pred CCCCCEEEEEccCCChHHHH---HHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHH
Q 030299 39 FEGVKRVVDLCAAPGSWSQV---LSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~---l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++|++||=.|+ |+..+. +++..+ ..+|+++|.++.+ .-.|+..+ -|..+.+..+++
T Consensus 174 ~~~g~~VlV~G~--g~vG~~a~~~ak~~G-------------~~~Vi~~~~~~~~~~~~~~~Ga~~~-i~~~~~~~~~~i 237 (358)
T TIGR03451 174 VKRGDSVAVIGC--GGVGDAAIAGAALAG-------------ASKIIAVDIDDRKLEWAREFGATHT-VNSSGTDPVEAI 237 (358)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC-------------CCeEEEEcCCHHHHHHHHHcCCceE-EcCCCcCHHHHH
Confidence 478999998876 444444 444443 1359999987742 11233211 122233333445
Q ss_pred HhhcCCCCccEEee
Q 030299 112 IRHFDGCKADLVVC 125 (179)
Q Consensus 112 ~~~~~~~~~D~Vls 125 (179)
.+...+.++|+|+-
T Consensus 238 ~~~~~~~g~d~vid 251 (358)
T TIGR03451 238 RALTGGFGADVVID 251 (358)
T ss_pred HHHhCCCCCCEEEE
Confidence 44444457898873
No 449
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=54.64 E-value=71 Score=25.73 Aligned_cols=77 Identities=10% Similarity=-0.045 Sum_probs=45.7
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC----------CC--CCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM----------AP--IEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~----------~~--~~~v~~i~gDi~~~~~~ 108 (179)
+++++|=.|++.|.-.. +++++.. .+..|+.+..... .. -..+.++++|+++.+..
T Consensus 7 ~~k~vlItGas~gIG~~-ia~~l~~-----------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 74 (260)
T PRK08416 7 KGKTLVISGGTRGIGKA-IVYEFAQ-----------SGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETY 74 (260)
T ss_pred CCCEEEEeCCCchHHHH-HHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 35688888887664443 3343321 1456766643221 01 12467889999998766
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+++.+.+. -+.+|+++++...
T Consensus 75 ~~~~~~~~~~~g~id~lv~nAg~ 97 (260)
T PRK08416 75 KELFKKIDEDFDRVDFFISNAII 97 (260)
T ss_pred HHHHHHHHHhcCCccEEEECccc
Confidence 55554332 1368999998753
No 450
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=54.64 E-value=1.1e+02 Score=24.41 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-------CCCCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.+||=.|++ |+....+++++.. .+.+|+.+|.++.. ....+.++++|+++.+..+++.+.
T Consensus 6 ~~~vlItGas-~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 6 GKVALLTGAA-SGIGEAVAERYLA-----------EGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----------cCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 4567777754 5566666655532 14689888877631 123577889999998876665554
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
.. -++.|+|++..+.
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 74 AVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 31 1368999987653
No 451
>PRK05599 hypothetical protein; Provisional
Probab=54.54 E-value=62 Score=25.97 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=45.4
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C--CCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P--IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~--~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+||=.|++.| ....+++++.. ...|+.++.++-. . ...+.++++|+.+.+..+++.
T Consensus 2 ~vlItGas~G-IG~aia~~l~~------------g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~ 68 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCH------------GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELV 68 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhC------------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHH
Confidence 4666777655 45555555432 4677777765421 1 123778899999988766655
Q ss_pred hhcC--CCCccEEeeCCCC
Q 030299 113 RHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 113 ~~~~--~~~~D~VlsD~~~ 129 (179)
+... -+++|+++++.+.
T Consensus 69 ~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 69 KQTQELAGEISLAVVAFGI 87 (246)
T ss_pred HHHHHhcCCCCEEEEecCc
Confidence 4432 1468999987653
No 452
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.26 E-value=1.1e+02 Score=24.20 Aligned_cols=76 Identities=18% Similarity=0.048 Sum_probs=49.8
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+.+||=.|+ .|+....+++++.. .+..|+.++.++.. ...++..+.+|+++.+..+++
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAK-----------EGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 456776665 56677777766542 24689988887631 123577889999998866555
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... .+.+|+|++..+.
T Consensus 72 ~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 72 IDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 54321 1368999998753
No 453
>PLN02427 UDP-apiose/xylose synthase
Probab=54.18 E-value=1.4e+02 Score=25.66 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=48.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----C------CCCeeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----P------IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~------~~~v~~i~gDi~~~~~~~~ 110 (179)
.++||=.| |+|-...++++++-.. +...|+++|.++.. + .++++++.+|+++.+...+
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~----------~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 82 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTE----------TPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEG 82 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhc----------CCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHH
Confidence 35777555 6788888887776420 12579999965421 0 1368999999999766544
Q ss_pred HHhhcCCCCccEEeeCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~ 129 (179)
+. . .+|+|++-++.
T Consensus 83 ~~---~--~~d~ViHlAa~ 96 (386)
T PLN02427 83 LI---K--MADLTINLAAI 96 (386)
T ss_pred Hh---h--cCCEEEEcccc
Confidence 33 2 48999998764
No 454
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=54.10 E-value=70 Score=28.86 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=50.7
Q ss_pred CCCCEEEEEccCCChHHHH-HHHHhCCCCCCCCCCCCCCCCeEEEEeCCC--CC------------------CCCC--ee
Q 030299 40 EGVKRVVDLCAAPGSWSQV-LSRKLYLPAKLSPDSREGDLPLIVAIDLQP--MA------------------PIEG--VI 96 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~-l~~~~~~~~~~~~~~~~~~~~~VvavD~~~--~~------------------~~~~--v~ 96 (179)
+.++++|=.|++.|.-.-+ ++..+.. +..|++++... .. .-.| +.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~~------------GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~ 106 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFGA------------GADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAK 106 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHHc------------CCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceE
Confidence 5578999999998754332 4555521 46788887532 11 0113 45
Q ss_pred EEeccccchhhHHHHHhhcCC--CCccEEeeCCCCC
Q 030299 97 QVQGDITNARTAEVVIRHFDG--CKADLVVCDGAPD 130 (179)
Q Consensus 97 ~i~gDi~~~~~~~~l~~~~~~--~~~D~VlsD~~~~ 130 (179)
.+.+|+++.+..+++.+...+ +++|+++++.+..
T Consensus 107 ~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 107 SINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred EEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 779999998866555544321 4699999998765
No 455
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=54.07 E-value=1.1e+02 Score=24.50 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=48.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
.+.++|=.|++.|.- ..++.++.. .+..|+.++.++.. . ...+.++++|+++.+..++
T Consensus 9 ~~k~~lItGa~~~iG-~~ia~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 76 (265)
T PRK07097 9 KGKIALITGASYGIG-FAIAKAYAK-----------AGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQA 76 (265)
T ss_pred CCCEEEEeCCCchHH-HHHHHHHHH-----------CCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 456788888886544 444443321 14678888776531 1 1247788999999886655
Q ss_pred HHhhcC--CCCccEEeeCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~ 129 (179)
+..... -+++|.|++..+.
T Consensus 77 ~~~~~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 77 MVSQIEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHHHHHhCCCCCEEEECCCC
Confidence 554321 1368999998764
No 456
>PRK06484 short chain dehydrogenase; Validated
Probab=54.02 E-value=49 Score=29.71 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=48.8
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C-CCCeeEEeccccchhhHHHHHh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P-IEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~-~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+++++|=.|++.|.-. .+++++.. ....|+.++.++.. . -.++.++++|+++.+..+++.+
T Consensus 4 ~~k~~lITGas~gIG~-aia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 71 (520)
T PRK06484 4 QSRVVLVTGAAGGIGR-AACQRFAR-----------AGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFE 71 (520)
T ss_pred CCeEEEEECCCcHHHH-HHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHH
Confidence 4667888888776444 34444332 14688888876531 1 1356678999999876655554
Q ss_pred hcC--CCCccEEeeCCCC
Q 030299 114 HFD--GCKADLVVCDGAP 129 (179)
Q Consensus 114 ~~~--~~~~D~VlsD~~~ 129 (179)
... -+++|+++++.+.
T Consensus 72 ~~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 72 QLHREFGRIDVLVNNAGV 89 (520)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 322 1368999998653
No 457
>PLN02650 dihydroflavonol-4-reductase
Probab=53.91 E-value=98 Score=26.22 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=45.4
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CC----CCeeEEeccccchhhHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PI----EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~----~~v~~i~gDi~~~~~~~~ 110 (179)
.+||=.| |+|....++++++-. .+.+|++++..+.. .. .+++++.+|+++.+...+
T Consensus 6 k~iLVTG-atGfIGs~l~~~L~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 6 ETVCVTG-ASGFIGSWLVMRLLE-----------RGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CEEEEeC-CcHHHHHHHHHHHHH-----------CCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence 3555444 567777777776632 14578887665421 01 247889999999876555
Q ss_pred HHhhcCCCCccEEeeCCCCC
Q 030299 111 VIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~~~~~D~VlsD~~~~ 130 (179)
+.+ .+|.|++-+++.
T Consensus 74 ~~~-----~~d~ViH~A~~~ 88 (351)
T PLN02650 74 AIR-----GCTGVFHVATPM 88 (351)
T ss_pred HHh-----CCCEEEEeCCCC
Confidence 442 489999987653
No 458
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=52.97 E-value=37 Score=29.73 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCeEEEEeCCCCC---CCCC--eeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCCCCCCCccc
Q 030299 78 LPLIVAIDLQPMA---PIEG--VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 138 (179)
Q Consensus 78 ~~~VvavD~~~~~---~~~~--v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~~~g~~~~d 138 (179)
+-.|+.+|...-- .+.. +.|++||+.|.+.++++.+ +.++|.|++-++...-|....+
T Consensus 24 G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~---~~~idaViHFAa~~~VgESv~~ 86 (329)
T COG1087 24 GHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFE---ENKIDAVVHFAASISVGESVQN 86 (329)
T ss_pred CCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHH---hcCCCEEEECccccccchhhhC
Confidence 5689999987632 2233 6899999999887777654 4689999999887666655443
No 459
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=52.96 E-value=53 Score=27.54 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=38.9
Q ss_pred CEEEEEccCCCh-HHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCC-e-eEEecc-ccchhhHHHHHhhcCCC
Q 030299 43 KRVVDLCAAPGS-WSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEG-V-IQVQGD-ITNARTAEVVIRHFDGC 118 (179)
Q Consensus 43 ~~VlDLgagpGg-~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~-v-~~i~gD-i~~~~~~~~l~~~~~~~ 118 (179)
.+||=+|+|++. ....+.+. + .+.+|+++|.++..+... + .+...+ ..+....+.+.+.....
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~-~------------~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~ 68 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKS-L------------LKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKE 68 (326)
T ss_pred ceEEEecCCccHHHHHHHHHh-c------------cCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHh
Confidence 478889999995 33344332 2 137899999998653211 0 122222 22332333444433445
Q ss_pred CccEEeeC
Q 030299 119 KADLVVCD 126 (179)
Q Consensus 119 ~~D~VlsD 126 (179)
++|.|+.-
T Consensus 69 ~id~ii~~ 76 (326)
T PRK12767 69 KIDLLIPL 76 (326)
T ss_pred CCCEEEEC
Confidence 78999863
No 460
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=52.88 E-value=63 Score=25.18 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=48.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
+++||=.|+ .|+....+++.+.. .+..|+.++-++.. ....+.++.+|+++.+....+
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 72 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAA-----------DGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRAL 72 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----------CCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 457887776 57777776665532 13568888877632 112467888999998765554
Q ss_pred HhhcC--CCCccEEeeCCCC
Q 030299 112 IRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~--~~~~D~VlsD~~~ 129 (179)
.+... -.++|.|++..+.
T Consensus 73 ~~~~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 73 IEAAVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHHHHhCCCCEEEECCCc
Confidence 44321 1368999988753
No 461
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=52.73 E-value=20 Score=33.72 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=44.1
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
++|+=+| -|.+.+.+++.+.. .+..++.+|.+|.. .-.|...+.||.++++..++ ..-.
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~----agi~ 463 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMA-----------NKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA----AGAE 463 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh----cCCc
Confidence 4555544 55566777766532 14689999999842 23578889999999886543 2334
Q ss_pred CccEEeeCC
Q 030299 119 KADLVVCDG 127 (179)
Q Consensus 119 ~~D~VlsD~ 127 (179)
..|.|++-.
T Consensus 464 ~A~~vv~~~ 472 (601)
T PRK03659 464 KAEAIVITC 472 (601)
T ss_pred cCCEEEEEe
Confidence 577777643
No 462
>PRK07985 oxidoreductase; Provisional
Probab=51.99 E-value=95 Score=25.81 Aligned_cols=77 Identities=6% Similarity=-0.002 Sum_probs=46.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~ 108 (179)
.+.++|=.|++. +....+++++.. .+..|+.++..... .-..+.++++|+++.+..
T Consensus 48 ~~k~vlITGas~-gIG~aia~~L~~-----------~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 115 (294)
T PRK07985 48 KDRKALVTGGDS-GIGRAAAIAYAR-----------EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFA 115 (294)
T ss_pred CCCEEEEECCCC-cHHHHHHHHHHH-----------CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHH
Confidence 356889889764 455555555432 14678877654311 012466789999998765
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
.++.+... -+.+|++++....
T Consensus 116 ~~~~~~~~~~~g~id~lv~~Ag~ 138 (294)
T PRK07985 116 RSLVHEAHKALGGLDIMALVAGK 138 (294)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 55443321 1368999987653
No 463
>PRK08017 oxidoreductase; Provisional
Probab=51.92 E-value=55 Score=26.00 Aligned_cols=74 Identities=9% Similarity=-0.033 Sum_probs=45.8
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--C--CCCeeEEeccccchhhHHHHHhhc---C
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--P--IEGVIQVQGDITNARTAEVVIRHF---D 116 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--~--~~~v~~i~gDi~~~~~~~~l~~~~---~ 116 (179)
+||=.|| .|+....+++.+.. .+..|++++.++.. . ..++..+++|+++.+....+.+.. .
T Consensus 4 ~vlVtGa-sg~IG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~ 71 (256)
T PRK08017 4 SVLITGC-SSGIGLEAALELKR-----------RGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALT 71 (256)
T ss_pred EEEEECC-CChHHHHHHHHHHH-----------CCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhc
Confidence 5777777 45666666555432 14588888876532 1 136788899999876544433322 1
Q ss_pred CCCccEEeeCCCC
Q 030299 117 GCKADLVVCDGAP 129 (179)
Q Consensus 117 ~~~~D~VlsD~~~ 129 (179)
.+.+|.+++.++.
T Consensus 72 ~~~~~~ii~~ag~ 84 (256)
T PRK08017 72 DNRLYGLFNNAGF 84 (256)
T ss_pred CCCCeEEEECCCC
Confidence 2468888888764
No 464
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=51.60 E-value=1.1e+02 Score=29.31 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=49.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~~ 109 (179)
+++||=.|++. +....+++++.. .+..|+.+|.++.. ....+..+++|+++.+..+
T Consensus 414 gkvvLVTGasg-gIG~aiA~~La~-----------~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~ 481 (676)
T TIGR02632 414 RRVAFVTGGAG-GIGRETARRLAA-----------EGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVK 481 (676)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHh-----------CCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHH
Confidence 56788777764 455555555432 14689999987521 1124667899999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~~~ 131 (179)
++.+... -+++|+|++..+...
T Consensus 482 ~a~~~i~~~~g~iDilV~nAG~~~ 505 (676)
T TIGR02632 482 AAFADVALAYGGVDIVVNNAGIAT 505 (676)
T ss_pred HHHHHHHHhcCCCcEEEECCCCCC
Confidence 5444221 136899999887533
No 465
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.21 E-value=1.2e+02 Score=23.84 Aligned_cols=76 Identities=9% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC-CCeeEEeccccchhhHHHHHhh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI-EGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~-~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+.+||=.|++ |+....+++++.. ....|+.++.++-. .+ ..+.++++|+++.+....+.+.
T Consensus 6 ~k~vlItGas-g~iG~~la~~l~~-----------~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 6 GKTALITGGT-SGIGLETARQFLA-----------EGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----------CCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHH
Confidence 4567777765 5555555555432 14688888876421 11 2467789999987755544433
Q ss_pred cC--CCCccEEeeCCCC
Q 030299 115 FD--GCKADLVVCDGAP 129 (179)
Q Consensus 115 ~~--~~~~D~VlsD~~~ 129 (179)
.. .+++|.|++..+.
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 74 LAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 21 1368999998754
No 466
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=51.13 E-value=26 Score=31.30 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=29.5
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
++|+++||-|.+|--+-..|+... | .+|+|||++|-
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~-P--------------~~I~aVDlNp~ 68 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAG-P--------------KRIHAVDLNPA 68 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcC-C--------------ceEEEEeCCHH
Confidence 478999999998888877776542 2 68999999995
No 467
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=50.89 E-value=34 Score=30.19 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=46.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
.++|+=+|+ |...+.+++.+.. .+..|+.+|.++.. ..+++.++.||.++.+..++ .
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~-----------~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~----~ 293 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEK-----------EGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEE----E 293 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHh-----------CCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHh----c
Confidence 456776666 6677777776642 24689999988742 23578889999998876433 2
Q ss_pred CCCCccEEeeCC
Q 030299 116 DGCKADLVVCDG 127 (179)
Q Consensus 116 ~~~~~D~VlsD~ 127 (179)
.-..+|.|++-.
T Consensus 294 ~~~~a~~vi~~~ 305 (453)
T PRK09496 294 GIDEADAFIALT 305 (453)
T ss_pred CCccCCEEEECC
Confidence 234688888743
No 468
>PRK06914 short chain dehydrogenase; Provisional
Probab=50.31 E-value=1.3e+02 Score=24.21 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=46.2
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----------C-CCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----------P-IEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----------~-~~~v~~i~gDi~~~~~~~ 109 (179)
+.++|=.|++. +....+++.+-. .+..|++++.++.. . ..++.++++|+++.+..+
T Consensus 3 ~k~~lItGasg-~iG~~la~~l~~-----------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~ 70 (280)
T PRK06914 3 KKIAIVTGASS-GFGLLTTLELAK-----------KGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIH 70 (280)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHh-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHH
Confidence 34667777554 455555444421 24688888866521 0 135788899999987654
Q ss_pred HHHhhcC-CCCccEEeeCCCCCC
Q 030299 110 VVIRHFD-GCKADLVVCDGAPDV 131 (179)
Q Consensus 110 ~l~~~~~-~~~~D~VlsD~~~~~ 131 (179)
.+.+... -+++|.|++......
T Consensus 71 ~~~~~~~~~~~id~vv~~ag~~~ 93 (280)
T PRK06914 71 NFQLVLKEIGRIDLLVNNAGYAN 93 (280)
T ss_pred HHHHHHHhcCCeeEEEECCcccc
Confidence 4222111 136899999876443
No 469
>PRK12742 oxidoreductase; Provisional
Probab=50.28 E-value=98 Score=24.18 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=45.7
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHF 115 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~ 115 (179)
+++||=.|+ .|+....+++.+.. .+..|+..+....+ ...++.++.+|+++.+...++.+.+
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~-----------~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~ 73 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVT-----------DGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKS 73 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----------CCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHh
Confidence 567887777 44555555555432 14577766543211 1125677889999987665555543
Q ss_pred CCCCccEEeeCCCCC
Q 030299 116 DGCKADLVVCDGAPD 130 (179)
Q Consensus 116 ~~~~~D~VlsD~~~~ 130 (179)
.++|+|++.....
T Consensus 74 --~~id~li~~ag~~ 86 (237)
T PRK12742 74 --GALDILVVNAGIA 86 (237)
T ss_pred --CCCcEEEECCCCC
Confidence 3689999887543
No 470
>PRK05854 short chain dehydrogenase; Provisional
Probab=50.17 E-value=1.5e+02 Score=24.82 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=49.2
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~ 108 (179)
.+.+++=.|++.| .-..+++.+.. .+.+|+.++.++.. +-.++.++++|+.+.+..
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~-----------~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv 80 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAA-----------AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASV 80 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHH
Confidence 3567887787655 44444444432 14678877765421 112578899999998876
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+++.+.+. ...+|+++++.+.
T Consensus 81 ~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 81 AALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHhCCCccEEEECCcc
Confidence 66655432 2468999998764
No 471
>PRK07831 short chain dehydrogenase; Provisional
Probab=50.02 E-value=1.3e+02 Score=24.03 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=47.5
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-C--CCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-I--EGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~--~~v~~i~gDi~~~~~~ 108 (179)
++.++|=.|++-.|....+++.+.. .+..|+.+|..+.. . . ..+.++++|+++.+..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~-----------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 84 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALE-----------EGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQV 84 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHH
Confidence 4667888887522344444444321 14578888876521 0 1 2477889999998766
Q ss_pred HHHHhhcC--CCCccEEeeCCCC
Q 030299 109 EVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 109 ~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
+++.+... -+++|+|++....
T Consensus 85 ~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 85 DALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 55554321 1368999998864
No 472
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=49.96 E-value=36 Score=27.32 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=36.7
Q ss_pred CCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhcCCCCccEEeeCCCCC
Q 030299 78 LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 78 ~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
+..|+.+|..+... ....++++|+++.+..+++.+... +++|+|+++.+..
T Consensus 9 G~~Vv~~~r~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~ 59 (241)
T PRK12428 9 GARVIGVDRREPGM-TLDGFIQADLGDPASIDAAVAALP-GRIDALFNIAGVP 59 (241)
T ss_pred CCEEEEEeCCcchh-hhhHhhcccCCCHHHHHHHHHHhc-CCCeEEEECCCCC
Confidence 46788888776431 234567999999887777776554 4799999988643
No 473
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=49.38 E-value=59 Score=28.18 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=41.5
Q ss_pred CCCCEEEEEccCCChHH-HHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHh
Q 030299 40 EGVKRVVDLCAAPGSWS-QVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s-~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
.++.+|+=+||||=|.. ..+++..+ ...|+++|.++.+ ..-+...+.-.-.+ .....+..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-------------a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~ 232 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-------------ASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILE 232 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-------------CceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHH
Confidence 34559999999996665 45555555 4899999999842 11233222111111 22333333
Q ss_pred hcCCCCccEEee
Q 030299 114 HFDGCKADLVVC 125 (179)
Q Consensus 114 ~~~~~~~D~Vls 125 (179)
...+..+|+|+=
T Consensus 233 ~t~g~g~D~vie 244 (350)
T COG1063 233 LTGGRGADVVIE 244 (350)
T ss_pred HhCCCCCCEEEE
Confidence 344457999873
No 474
>PRK08862 short chain dehydrogenase; Provisional
Probab=49.09 E-value=75 Score=25.43 Aligned_cols=76 Identities=9% Similarity=-0.014 Sum_probs=47.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
++.++|=.|++.|.-...+ .++.. .+..|+.++.++.. . ...+..++.|+++.+..++
T Consensus 4 ~~k~~lVtGas~GIG~aia-~~la~-----------~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 4 KSSIILITSAGSVLGRTIS-CHFAR-----------LGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred CCeEEEEECCccHHHHHHH-HHHHH-----------CCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 3568888888887644443 33321 15678888766531 1 1245677899999876655
Q ss_pred HHhhcC---CCCccEEeeCCC
Q 030299 111 VIRHFD---GCKADLVVCDGA 128 (179)
Q Consensus 111 l~~~~~---~~~~D~VlsD~~ 128 (179)
+.+... +..+|+++++.+
T Consensus 72 ~~~~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 72 LFDAIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHHHHHHhCCCCCEEEECCc
Confidence 554322 226999999874
No 475
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.86 E-value=85 Score=24.77 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=43.9
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHh
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+.++|=.|++.| ....+++++.. ....|+.++..... ....+.++++|+++.+...++.+
T Consensus 5 ~k~ilItGas~g-IG~~la~~l~~-----------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (253)
T PRK08642 5 EQTVLVTGGSRG-LGAAIARAFAR-----------EGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFA 72 (253)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHH-----------CCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHH
Confidence 456777777544 55555554432 13567665433211 01357788999999876555443
Q ss_pred hcC---CCCccEEeeCCC
Q 030299 114 HFD---GCKADLVVCDGA 128 (179)
Q Consensus 114 ~~~---~~~~D~VlsD~~ 128 (179)
... +.++|.|+++..
T Consensus 73 ~~~~~~g~~id~li~~ag 90 (253)
T PRK08642 73 TATEHFGKPITTVVNNAL 90 (253)
T ss_pred HHHHHhCCCCeEEEECCC
Confidence 321 234999999875
No 476
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.23 E-value=11 Score=33.89 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=12.9
Q ss_pred CCEEEEEccCCChHHHH
Q 030299 42 VKRVVDLCAAPGSWSQV 58 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~ 58 (179)
.+++||+|+|||.-.-.
T Consensus 114 pqsiLDvG~GPgtgl~A 130 (484)
T COG5459 114 PQSILDVGAGPGTGLWA 130 (484)
T ss_pred cchhhccCCCCchhhhh
Confidence 35699999999965443
No 477
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=48.20 E-value=1.4e+02 Score=23.75 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CC----CCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PI----EGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~----~~v~~i~gDi~~~~~~~~ 110 (179)
.+.+||=.|+ .|+....+++++.. .+..|+.++.++.. .+ ..+..+++|+++.+..++
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~-----------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 76 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQ-----------AGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRA 76 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHH
Confidence 4668888885 56666666666532 24688888876521 01 236778999999876665
Q ss_pred HHhhcC--CCCccEEeeCCCCC
Q 030299 111 VIRHFD--GCKADLVVCDGAPD 130 (179)
Q Consensus 111 l~~~~~--~~~~D~VlsD~~~~ 130 (179)
+.+... -...|.|++..+..
T Consensus 77 ~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 77 AIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 554321 13689999987654
No 478
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=48.09 E-value=8.3 Score=32.23 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.6
Q ss_pred CEEEEEccCCChHHHHHHHHh
Q 030299 43 KRVVDLCAAPGSWSQVLSRKL 63 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~ 63 (179)
.++||||||-|-.|..++..+
T Consensus 114 ~~lLDlGAGdGeit~~m~p~f 134 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTF 134 (288)
T ss_pred eeEEeccCCCcchhhhhcchH
Confidence 589999999999988776554
No 479
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=47.75 E-value=23 Score=30.64 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=41.8
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCe-eEEeccccchhhHHHHHhh
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGV-IQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v-~~i~gDi~~~~~~~~l~~~ 114 (179)
..|..++|.|||-|-.+-. . +...++++|+.... .-.|. ....+|+.+.+
T Consensus 44 ~~gsv~~d~gCGngky~~~---~--------------p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p-------- 98 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---N--------------PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLP-------- 98 (293)
T ss_pred CCcceeeecccCCcccCcC---C--------------CcceeeecchhhhhccccccCCCceeehhhhhcCC--------
Confidence 4588999999999953221 1 24689999999742 12233 46678888765
Q ss_pred cCCCCccEEeeC
Q 030299 115 FDGCKADLVVCD 126 (179)
Q Consensus 115 ~~~~~~D~VlsD 126 (179)
+.+..||..++-
T Consensus 99 ~~~~s~d~~lsi 110 (293)
T KOG1331|consen 99 FREESFDAALSI 110 (293)
T ss_pred CCCCccccchhh
Confidence 345678888764
No 480
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=47.62 E-value=1.4e+02 Score=25.26 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=43.6
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCC-eEEEEeCCCC----C---C---CCCeeEEeccccchhhHHHHH
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLP-LIVAIDLQPM----A---P---IEGVIQVQGDITNARTAEVVI 112 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~-~VvavD~~~~----~---~---~~~v~~i~gDi~~~~~~~~l~ 112 (179)
+||=.| |+|....++++.+-. ... .|+.+|..+- . + ...+.++.+|+++.+..+++.
T Consensus 3 ~vlVtG-atGfIG~~l~~~L~~-----------~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 70 (355)
T PRK10217 3 KILITG-GAGFIGSALVRYIIN-----------ETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVF 70 (355)
T ss_pred EEEEEc-CCcHHHHHHHHHHHH-----------cCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHH
Confidence 445444 566777777776632 122 3555664321 0 1 124778899999987665554
Q ss_pred hhcCCCCccEEeeCCCCC
Q 030299 113 RHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 113 ~~~~~~~~D~VlsD~~~~ 130 (179)
+ +..+|.|++.++..
T Consensus 71 ~---~~~~D~Vih~A~~~ 85 (355)
T PRK10217 71 T---EHQPDCVMHLAAES 85 (355)
T ss_pred h---hcCCCEEEECCccc
Confidence 3 23689999998753
No 481
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=47.39 E-value=21 Score=33.08 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=24.3
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQ 87 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~ 87 (179)
.|||+|+|+|-.|..++...+ -.|+|++.-
T Consensus 69 ~vLdigtGTGLLSmMAvraga--------------D~vtA~Evf 98 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--------------DSVTACEVF 98 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--------------CeEEeehhh
Confidence 479999999999998887753 358888765
No 482
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=46.77 E-value=70 Score=28.21 Aligned_cols=67 Identities=18% Similarity=0.135 Sum_probs=44.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-----CCCCeeEEeccccchhhHHHHHhhcCCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-----PIEGVIQVQGDITNARTAEVVIRHFDGC 118 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-----~~~~v~~i~gDi~~~~~~~~l~~~~~~~ 118 (179)
+|+=+|+ |.+.+.+++.+.. .+..|+.+|.++.. ...++..+.||.++....++ ..-.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~-----------~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~----~~~~ 64 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSG-----------ENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLRE----AGAE 64 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHh-----------CCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHH----cCCC
Confidence 4555555 8888888887642 24689999987732 12478889999998765433 2224
Q ss_pred CccEEeeCC
Q 030299 119 KADLVVCDG 127 (179)
Q Consensus 119 ~~D~VlsD~ 127 (179)
.+|.|++-.
T Consensus 65 ~a~~vi~~~ 73 (453)
T PRK09496 65 DADLLIAVT 73 (453)
T ss_pred cCCEEEEec
Confidence 678777743
No 483
>PRK07577 short chain dehydrogenase; Provisional
Probab=46.29 E-value=1.4e+02 Score=23.22 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=46.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCCCCCCeeEEeccccchhhHHHHHhhc-CCCCc
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHF-DGCKA 120 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~~~~~v~~i~gDi~~~~~~~~l~~~~-~~~~~ 120 (179)
+.+||=.| |.|+....+++.+.. .+.+|++++..+....+ ..++++|+++.+..+++.+.. .....
T Consensus 3 ~k~vlItG-~s~~iG~~ia~~l~~-----------~G~~v~~~~r~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~ 69 (234)
T PRK07577 3 SRTVLVTG-ATKGIGLALSLRLAN-----------LGHQVIGIARSAIDDFP-GELFACDLADIEQTAATLAQINEIHPV 69 (234)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHH-----------CCCEEEEEeCCcccccC-ceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence 45666444 455666666665532 14689988877654332 357899999987655444322 12257
Q ss_pred cEEeeCCCC
Q 030299 121 DLVVCDGAP 129 (179)
Q Consensus 121 D~VlsD~~~ 129 (179)
|.|++..+.
T Consensus 70 d~vi~~ag~ 78 (234)
T PRK07577 70 DAIVNNVGI 78 (234)
T ss_pred cEEEECCCC
Confidence 999998764
No 484
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=45.75 E-value=69 Score=29.11 Aligned_cols=69 Identities=22% Similarity=0.174 Sum_probs=50.9
Q ss_pred CCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC--C----------------CCCCeeEEecc
Q 030299 40 EGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM--A----------------PIEGVIQVQGD 101 (179)
Q Consensus 40 ~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~--~----------------~~~~v~~i~gD 101 (179)
+.-.+||=||.|-|--.+.+.+. | +..+|+-||+.|. + .-|.|+.+..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P------------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-P------------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-C------------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 44578999999999888887664 2 2578999999992 0 12578888888
Q ss_pred ccchhhHHHHHhhcCCCCccEEeeCCC
Q 030299 102 ITNARTAEVVIRHFDGCKADLVVCDGA 128 (179)
Q Consensus 102 i~~~~~~~~l~~~~~~~~~D~VlsD~~ 128 (179)
.+++-. -....||+|+.|..
T Consensus 355 Af~wlr-------~a~~~fD~vIVDl~ 374 (508)
T COG4262 355 AFQWLR-------TAADMFDVVIVDLP 374 (508)
T ss_pred HHHHHH-------hhcccccEEEEeCC
Confidence 887531 12358999999985
No 485
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=45.59 E-value=11 Score=33.37 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=31.0
Q ss_pred CCCCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC
Q 030299 39 FEGVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM 89 (179)
Q Consensus 39 l~~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~ 89 (179)
+.++..++|+|||-|+.+.++..-. ...++|+|.++.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--------------~~~~~Gl~~n~~ 144 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--------------KAGVVGLDNNAY 144 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--------------cCCccCCCcCHH
Confidence 3678899999999999999997653 478999999884
No 486
>PLN02780 ketoreductase/ oxidoreductase
Probab=45.31 E-value=1.1e+02 Score=26.04 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=47.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CC--CCeeEEeccccc--hh
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PI--EGVIQVQGDITN--AR 106 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~--~~v~~i~gDi~~--~~ 106 (179)
.|..+|=.||+.|. ...+++++.. .+..|+.++.++.. .. ..+..+.+|+++ .+
T Consensus 52 ~g~~~lITGAs~GI-G~alA~~La~-----------~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~ 119 (320)
T PLN02780 52 YGSWALVTGPTDGI-GKGFAFQLAR-----------KGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDE 119 (320)
T ss_pred cCCEEEEeCCCcHH-HHHHHHHHHH-----------CCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHH
Confidence 47788888876654 4444444432 14578888877621 11 235667889875 23
Q ss_pred hHHHHHhhcCCCCccEEeeCCCCC
Q 030299 107 TAEVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 107 ~~~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
..+++.+.+.+..+|+++++.+..
T Consensus 120 ~~~~l~~~~~~~didilVnnAG~~ 143 (320)
T PLN02780 120 GVKRIKETIEGLDVGVLINNVGVS 143 (320)
T ss_pred HHHHHHHHhcCCCccEEEEecCcC
Confidence 445555555544577999887643
No 487
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.50 E-value=1.6e+02 Score=23.53 Aligned_cols=78 Identities=12% Similarity=-0.003 Sum_probs=48.2
Q ss_pred CCCEEEEEccCC-ChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----------------CC----CCCeeEE
Q 030299 41 GVKRVVDLCAAP-GSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----------------AP----IEGVIQV 98 (179)
Q Consensus 41 ~g~~VlDLgagp-Gg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----------------~~----~~~v~~i 98 (179)
++.+||=.|++. +|....+++++.. .+..|+..+.+.. +. -..+.++
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~-----------~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 73 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAE-----------AGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSM 73 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHH-----------CCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEE
Confidence 367888899984 5666666655532 1456776643210 00 1246678
Q ss_pred eccccchhhHHHHHhhcC--CCCccEEeeCCCC
Q 030299 99 QGDITNARTAEVVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 99 ~gDi~~~~~~~~l~~~~~--~~~~D~VlsD~~~ 129 (179)
++|+++.+...++..... -+..|+|+++...
T Consensus 74 ~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 106 (256)
T PRK12859 74 ELDLTQNDAPKELLNKVTEQLGYPHILVNNAAY 106 (256)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 999999887666665432 1358999998764
No 488
>PRK07041 short chain dehydrogenase; Provisional
Probab=44.50 E-value=1.5e+02 Score=23.04 Aligned_cols=66 Identities=15% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------C---CCCeeEEeccccchhhHHHHHhhcCCCCcc
Q 030299 51 APGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------P---IEGVIQVQGDITNARTAEVVIRHFDGCKAD 121 (179)
Q Consensus 51 gpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~---~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D 121 (179)
|.|+....+++++.. .+..|+.++.++.. . ..++.++.+|+++.+...++.+.+ +++|
T Consensus 5 as~~iG~~~a~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~id 71 (230)
T PRK07041 5 GSSGIGLALARAFAA-----------EGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEA--GPFD 71 (230)
T ss_pred CCChHHHHHHHHHHH-----------CCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhc--CCCC
Confidence 445666666655532 14688888876421 1 236788899999998877777654 4689
Q ss_pred EEeeCCCC
Q 030299 122 LVVCDGAP 129 (179)
Q Consensus 122 ~VlsD~~~ 129 (179)
.+++....
T Consensus 72 ~li~~ag~ 79 (230)
T PRK07041 72 HVVITAAD 79 (230)
T ss_pred EEEECCCC
Confidence 99998754
No 489
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=44.27 E-value=49 Score=30.72 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=43.3
Q ss_pred CCCchHHHHHHhhCCcchhhhcHHhHHHHh-C-C-----CCCCCEEEEEccCCChHHH-HHHHHhCCCCCCCCCCCCCCC
Q 030299 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEF-N-I-----FEGVKRVVDLCAAPGSWSQ-VLSRKLYLPAKLSPDSREGDL 78 (179)
Q Consensus 7 ~~~d~y~~~a~~~~~~sRaa~KL~eid~~~-~-l-----l~~g~~VlDLgagpGg~s~-~l~~~~~~~~~~~~~~~~~~~ 78 (179)
++-|-+..++.-.||++ ..--.+...++ . . ..++.+|+=+||||=|..- ..+..++
T Consensus 125 q~~d~lssma~IAGy~A--v~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lG-------------- 188 (509)
T PRK09424 125 QSLDALSSMANIAGYRA--VIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLG-------------- 188 (509)
T ss_pred CCcccccchhhhhHHHH--HHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCC--------------
Confidence 66677778888888763 11111211221 1 0 1468999999999977644 5566654
Q ss_pred CeEEEEeCCCC
Q 030299 79 PLIVAIDLQPM 89 (179)
Q Consensus 79 ~~VvavD~~~~ 89 (179)
..|+++|.++.
T Consensus 189 A~V~a~D~~~~ 199 (509)
T PRK09424 189 AIVRAFDTRPE 199 (509)
T ss_pred CEEEEEeCCHH
Confidence 58999999984
No 490
>PRK06128 oxidoreductase; Provisional
Probab=43.95 E-value=1.9e+02 Score=23.98 Aligned_cols=76 Identities=11% Similarity=0.026 Sum_probs=46.0
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTAE 109 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~~ 109 (179)
+.+||=.|++.| .-..+++++.. .+..|+.++..+.. ....+.++++|+++.+..+
T Consensus 55 ~k~vlITGas~g-IG~~~a~~l~~-----------~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~ 122 (300)
T PRK06128 55 GRKALITGADSG-IGRATAIAFAR-----------EGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCR 122 (300)
T ss_pred CCEEEEecCCCc-HHHHHHHHHHH-----------cCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 568888887555 44555554432 14567766554311 0124667899999987655
Q ss_pred HHHhhcC--CCCccEEeeCCCC
Q 030299 110 VVIRHFD--GCKADLVVCDGAP 129 (179)
Q Consensus 110 ~l~~~~~--~~~~D~VlsD~~~ 129 (179)
++.+... -+++|+|+++.+.
T Consensus 123 ~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 123 QLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHHHHHhCCCCEEEECCcc
Confidence 5544321 1368999998864
No 491
>PRK12320 hypothetical protein; Provisional
Probab=43.83 E-value=1.3e+02 Score=29.12 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=43.1
Q ss_pred EEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC-CCCCeeEEeccccchhhHHHHHhhcCCCCccEE
Q 030299 45 VVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA-PIEGVIQVQGDITNARTAEVVIRHFDGCKADLV 123 (179)
Q Consensus 45 VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~-~~~~v~~i~gDi~~~~~~~~l~~~~~~~~~D~V 123 (179)
||=.| |+|.....+++++-. .+..|+++|..+.. ..++++++++|+++.. ..++ + .++|.|
T Consensus 3 ILVTG-AaGFIGs~La~~Ll~-----------~G~~Vi~ldr~~~~~~~~~ve~v~~Dl~d~~-l~~a---l--~~~D~V 64 (699)
T PRK12320 3 ILVTD-ATGAVGRSVTRQLIA-----------AGHTVSGIAQHPHDALDPRVDYVCASLRNPV-LQEL---A--GEADAV 64 (699)
T ss_pred EEEEC-CCCHHHHHHHHHHHh-----------CCCEEEEEeCChhhcccCCceEEEccCCCHH-HHHH---h--cCCCEE
Confidence 44333 466667777666532 14689999976532 2357889999999874 2222 2 258999
Q ss_pred eeCCCC
Q 030299 124 VCDGAP 129 (179)
Q Consensus 124 lsD~~~ 129 (179)
++-.+.
T Consensus 65 IHLAa~ 70 (699)
T PRK12320 65 IHLAPV 70 (699)
T ss_pred EEcCcc
Confidence 998765
No 492
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=43.80 E-value=1.9e+02 Score=24.03 Aligned_cols=73 Identities=21% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------------CCCCeeEEeccccchhhH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------------PIEGVIQVQGDITNARTA 108 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------------~~~~v~~i~gDi~~~~~~ 108 (179)
.|.+||=.| |+|.....+++++-. .+..|+++.-++.. ...+++++.+|+++.+..
T Consensus 4 ~~~~vlVTG-atG~iG~~l~~~L~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 71 (322)
T PLN02986 4 GGKLVCVTG-ASGYIASWIVKLLLL-----------RGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSF 71 (322)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-----------CCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchH
Confidence 355666655 566777776665532 13567755333211 123688999999998765
Q ss_pred HHHHhhcCCCCccEEeeCCCCC
Q 030299 109 EVVIRHFDGCKADLVVCDGAPD 130 (179)
Q Consensus 109 ~~l~~~~~~~~~D~VlsD~~~~ 130 (179)
.++.+ .+|.|++-+++.
T Consensus 72 ~~~~~-----~~d~vih~A~~~ 88 (322)
T PLN02986 72 EQAIE-----GCDAVFHTASPV 88 (322)
T ss_pred HHHHh-----CCCEEEEeCCCc
Confidence 54432 489999988763
No 493
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=43.65 E-value=13 Score=30.74 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=34.3
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCC-----C----C-CCC-eeEEeccccchhhHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPM-----A----P-IEG-VIQVQGDITNARTAEV 110 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~-----~----~-~~~-v~~i~gDi~~~~~~~~ 110 (179)
-.++||.|||-|..|..++-.+ .-+|--||..+- . . ..+ .++.+.-+.+..+
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--------------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P--- 118 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--------------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP--- 118 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---------------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------
T ss_pred cceEEecccccchhHHHHHHHh--------------cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC---
Confidence 4689999999999999775432 357877887762 1 1 122 2334444444331
Q ss_pred HHhhcCCCCccEEee
Q 030299 111 VIRHFDGCKADLVVC 125 (179)
Q Consensus 111 l~~~~~~~~~D~Vls 125 (179)
...+||+|.+
T Consensus 119 -----~~~~YDlIW~ 128 (218)
T PF05891_consen 119 -----EEGKYDLIWI 128 (218)
T ss_dssp ------TT-EEEEEE
T ss_pred -----CCCcEeEEEe
Confidence 1358999987
No 494
>PRK06720 hypothetical protein; Provisional
Probab=43.41 E-value=1.4e+02 Score=22.96 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=45.6
Q ss_pred CCCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHH
Q 030299 41 GVKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEV 110 (179)
Q Consensus 41 ~g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~ 110 (179)
++..++=.|++.|.-... +..+.. .+..|+.+|.++-. . ...+.++++|+++.+..++
T Consensus 15 ~gk~~lVTGa~~GIG~ai-a~~l~~-----------~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 82 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNT-ALLLAK-----------QGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQR 82 (169)
T ss_pred CCCEEEEecCCChHHHHH-HHHHHH-----------CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 466788888876554443 333321 14678888876421 0 1235678999998765444
Q ss_pred HH----hhcCCCCccEEeeCCCC
Q 030299 111 VI----RHFDGCKADLVVCDGAP 129 (179)
Q Consensus 111 l~----~~~~~~~~D~VlsD~~~ 129 (179)
+. +.+ +..|.++++...
T Consensus 83 ~v~~~~~~~--G~iDilVnnAG~ 103 (169)
T PRK06720 83 VISITLNAF--SRIDMLFQNAGL 103 (169)
T ss_pred HHHHHHHHc--CCCCEEEECCCc
Confidence 33 233 368999998653
No 495
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=43.03 E-value=32 Score=32.48 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=44.1
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
.++|+=+|+|+ +.+.+++.+.. .+-.++.+|.++.. .-.|...+.||.++++..++ ..-
T Consensus 400 ~~~vII~G~Gr--~G~~va~~L~~-----------~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~----agi 462 (621)
T PRK03562 400 QPRVIIAGFGR--FGQIVGRLLLS-----------SGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLES----AGA 462 (621)
T ss_pred cCcEEEEecCh--HHHHHHHHHHh-----------CCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHh----cCC
Confidence 35677766665 55666665432 14579999999842 23578889999999886433 222
Q ss_pred CCccEEeeC
Q 030299 118 CKADLVVCD 126 (179)
Q Consensus 118 ~~~D~VlsD 126 (179)
...|.|++-
T Consensus 463 ~~A~~vvv~ 471 (621)
T PRK03562 463 AKAEVLINA 471 (621)
T ss_pred CcCCEEEEE
Confidence 357777764
No 496
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.66 E-value=1.6e+02 Score=22.91 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=48.0
Q ss_pred CEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEE-eCCCCC----------CCCCeeEEeccccchhhHHHH
Q 030299 43 KRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAI-DLQPMA----------PIEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 43 ~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~Vvav-D~~~~~----------~~~~v~~i~gDi~~~~~~~~l 111 (179)
.++|=.|+ +|+....+++.+.. .+..|+.+ +.++.. .-..+.++.+|+++.+..+++
T Consensus 6 ~~ilI~Ga-sg~iG~~la~~l~~-----------~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (247)
T PRK05565 6 KVAIVTGA-SGGIGRAIAELLAK-----------EGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENL 73 (247)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHH-----------CCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 46666665 56676666655431 13577777 765421 012477889999998866555
Q ss_pred HhhcCC--CCccEEeeCCCCCC
Q 030299 112 IRHFDG--CKADLVVCDGAPDV 131 (179)
Q Consensus 112 ~~~~~~--~~~D~VlsD~~~~~ 131 (179)
.+.... .++|.|++..+...
T Consensus 74 ~~~~~~~~~~id~vi~~ag~~~ 95 (247)
T PRK05565 74 VEQIVEKFGKIDILVNNAGISN 95 (247)
T ss_pred HHHHHHHhCCCCEEEECCCcCC
Confidence 543211 36999999887543
No 497
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=42.54 E-value=1.1e+02 Score=25.84 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=44.2
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC----------CCCCeeEEeccccchhhHHHHHh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA----------PIEGVIQVQGDITNARTAEVVIR 113 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~----------~~~~v~~i~gDi~~~~~~~~l~~ 113 (179)
+||=.| |+|.....+++++... +...|+++|..... +..++.++.+|+++.+..+++.+
T Consensus 2 kilITG-gtG~iG~~l~~~L~~~----------g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 70 (352)
T PRK10084 2 KILVTG-GAGFIGSAVVRHIINN----------TQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFA 70 (352)
T ss_pred eEEEEC-CCcHHhHHHHHHHHHh----------CCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHH
Confidence 344444 5566667776665320 01247777754310 11346788999999876655554
Q ss_pred hcCCCCccEEeeCCCCC
Q 030299 114 HFDGCKADLVVCDGAPD 130 (179)
Q Consensus 114 ~~~~~~~D~VlsD~~~~ 130 (179)
. ..+|.|++.++..
T Consensus 71 ~---~~~d~vih~A~~~ 84 (352)
T PRK10084 71 Q---HQPDAVMHLAAES 84 (352)
T ss_pred h---cCCCEEEECCccc
Confidence 2 3689999988753
No 498
>PRK06924 short chain dehydrogenase; Provisional
Probab=42.49 E-value=1.3e+02 Score=23.83 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=38.1
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC--------CCCCeeEEeccccchhhHHHHHhh
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA--------PIEGVIQVQGDITNARTAEVVIRH 114 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~--------~~~~v~~i~gDi~~~~~~~~l~~~ 114 (179)
+||=.| |.|+....+++.+.. .+..|+.++..+.+ ...++.++++|+++.+..+++.+.
T Consensus 3 ~vlItG-asggiG~~ia~~l~~-----------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 69 (251)
T PRK06924 3 YVIITG-TSQGLGEAIANQLLE-----------KGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNE 69 (251)
T ss_pred EEEEec-CCchHHHHHHHHHHh-----------cCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHH
Confidence 455566 456666666666642 14688888876621 123677889999998776665543
No 499
>PRK12939 short chain dehydrogenase; Provisional
Probab=42.45 E-value=1.6e+02 Score=22.96 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=49.6
Q ss_pred CCEEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC---------C-CCCeeEEeccccchhhHHHH
Q 030299 42 VKRVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA---------P-IEGVIQVQGDITNARTAEVV 111 (179)
Q Consensus 42 g~~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~---------~-~~~v~~i~gDi~~~~~~~~l 111 (179)
+.++|=.|+ .|+....+++.+.. .+..|+.++.++.. . ..++.++++|+++.+..+++
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~-----------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAE-----------AGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRF 74 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHH-----------cCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 567776665 56777777766532 14678888866531 0 13578889999998876655
Q ss_pred HhhcCC--CCccEEeeCCCC
Q 030299 112 IRHFDG--CKADLVVCDGAP 129 (179)
Q Consensus 112 ~~~~~~--~~~D~VlsD~~~ 129 (179)
.+.... +++|.|++....
T Consensus 75 ~~~~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 75 FDAAAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 543211 368999988754
No 500
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=42.34 E-value=73 Score=25.96 Aligned_cols=67 Identities=22% Similarity=0.139 Sum_probs=44.8
Q ss_pred EEEEEccCCChHHHHHHHHhCCCCCCCCCCCCCCCCeEEEEeCCCCC------CCCCeeEEeccccchhhHHHHHhhcCC
Q 030299 44 RVVDLCAAPGSWSQVLSRKLYLPAKLSPDSREGDLPLIVAIDLQPMA------PIEGVIQVQGDITNARTAEVVIRHFDG 117 (179)
Q Consensus 44 ~VlDLgagpGg~s~~l~~~~~~~~~~~~~~~~~~~~~VvavD~~~~~------~~~~v~~i~gDi~~~~~~~~l~~~~~~ 117 (179)
+++=+|||. +...+++.+.. .+..|+.+|..+.. .-..+..+++|.++.+++++ ..-
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~-----------~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~----agi 64 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSE-----------EGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEE----AGI 64 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHh-----------CCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHh----cCC
Confidence 344555554 55566666543 14589999999842 12578888999999887554 334
Q ss_pred CCccEEeeCC
Q 030299 118 CKADLVVCDG 127 (179)
Q Consensus 118 ~~~D~VlsD~ 127 (179)
..+|.+++.-
T Consensus 65 ~~aD~vva~t 74 (225)
T COG0569 65 DDADAVVAAT 74 (225)
T ss_pred CcCCEEEEee
Confidence 5789998853
Done!