BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030301
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C6M1|GDT14_ARATH GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1
Length = 230
Score = 266 bits (679), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 139/180 (77%), Positives = 156/180 (86%), Gaps = 1/180 (0%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGE-AEEFEEVEKKLDA 59
MTILSA +GW APNLISRK THHITT+LFFGFGLWSLWD F +GG +EE EVE +LDA
Sbjct: 51 MTILSATLGWAAPNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDA 110
Query: 60 DFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAA 119
D KAN + K+ SK +DE KKQ R FL QFFSPIFLKAFSI FFGEWGDKSQLATIGLAA
Sbjct: 111 DLKANGKSPKDSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAA 170
Query: 120 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
DENPFGVVLGG++ Q LCTTAAVIGGKSLASQISE+IVALSGG+LFI+FGIQS+L+ V++
Sbjct: 171 DENPFGVVLGGVVAQFLCTTAAVIGGKSLASQISERIVALSGGMLFIIFGIQSYLTSVEA 230
>sp|Q9SX28|GDT15_ARATH GDT1-like protein 5 OS=Arabidopsis thaliana GN=At1g68650 PE=2 SV=1
Length = 228
Score = 260 bits (665), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/179 (75%), Positives = 151/179 (84%), Gaps = 1/179 (0%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MTILSA +GW APNLISRK THHITT LFFGFGLWSLWD F +GG +EE EVE +LD+D
Sbjct: 51 MTILSATLGWAAPNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSD 110
Query: 61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
K +K SK +DE KKQ+RPFL FFSPIFLKAFSI FFGEWGDKSQLATIGLAAD
Sbjct: 111 LKKTNDQSKN-SKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAAD 169
Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVKS 179
ENP GVVLGGI+ Q LCTTAAV+GGKSLASQISE+IVALSGG+LFI+FGIQS L+PV +
Sbjct: 170 ENPLGVVLGGIVAQTLCTTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTPVDA 228
>sp|B9G125|GDT15_ORYSJ GDT1-like protein 5 OS=Oryza sativa subsp. japonica GN=Os08g0433100
PE=2 SV=1
Length = 232
Score = 253 bits (646), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 128/175 (73%), Positives = 153/175 (87%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MT LS +GWVAPNLISRK THH+TT+LFF FG+ SLW+ F + G++EE EVE +LDA+
Sbjct: 52 MTALSVSLGWVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDAN 111
Query: 61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
FK+N +K SKA+D+ KKQ+RPF+LQFFSPIF+KAFSITFFGEWGDKSQ+ATIGLAAD
Sbjct: 112 FKSNKAESKSKSKANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAAD 171
Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 175
ENPFGVVLGG++ QALCTTAAV+GGKSLASQISEK+V LS GVLF++FGI S+LS
Sbjct: 172 ENPFGVVLGGVLAQALCTTAAVMGGKSLASQISEKMVGLSSGVLFLLFGIMSYLS 226
>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1
Length = 324
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 112/188 (59%), Gaps = 19/188 (10%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE--- 54
MT LS + G+ A +I R T++++TVLF FG+ L + D G+ EE EEV+
Sbjct: 140 MTCLSVLFGY-ATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQ-EELEEVQAEL 197
Query: 55 KKLDADFKAN-----AGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDK 109
KK D +F+ G + G+ KK L F SPIF++A ++TF EWGD+
Sbjct: 198 KKKDEEFQRTKLLNGPGDVETGTSITVPQKK-----WLHFISPIFVQALTLTFLAEWGDR 252
Query: 110 SQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 169
SQL TI LAA E+P+GV +GG +G LCT AVIGG+ +A +IS + V + GG++F+ F
Sbjct: 253 SQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFA 312
Query: 170 IQS-FLSP 176
+ F+SP
Sbjct: 313 FSALFISP 320
>sp|Q2R4J1|GDT13_ORYSJ GDT1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0472500
PE=2 SV=1
Length = 279
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 13/176 (7%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MT+LS +G + PNLISRK T+ TVL+ FGL L+ A+ + + +E+E+ +
Sbjct: 115 MTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKL 174
Query: 61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
K R F +F +PIFL+AF +TF EWGD+SQ+ATI LA
Sbjct: 175 ESGQG-------------KSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATH 221
Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
+N GV +G +G +CT+ AVIGG LAS+IS++ VA GGVLF+ F + S+ P
Sbjct: 222 KNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277
>sp|A2ZE50|GDT13_ORYSI GDT1-like protein 3 OS=Oryza sativa subsp. indica GN=OsI_36063 PE=3
SV=1
Length = 279
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 103/176 (58%), Gaps = 13/176 (7%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MT+LS +G + PNLISRK T+ TVL+ FGL L+ A+ + + +E+E+ +
Sbjct: 115 MTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKL 174
Query: 61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
K R F +F +PIFL+AF +TF EWGD+SQ+ATI LA
Sbjct: 175 ESGQG-------------KSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATH 221
Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
+N GV +G +G +CT+ AVIGG LAS+IS++ VA GGVLF+ F + S+ P
Sbjct: 222 KNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277
>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1
Length = 293
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 18/179 (10%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MTILS +G + PNLISRK T+ TVL+ FGL L+ A+ D
Sbjct: 128 MTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRS---------------TD 172
Query: 61 FKANAGATKEGSKADDELKKQRRPF---LLQFFSPIFLKAFSITFFGEWGDKSQLATIGL 117
K+N E + E + + PF +F +PIFL++F +TF EWGD+SQ+ATI L
Sbjct: 173 SKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIAL 232
Query: 118 AADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
A +N GV +G IG +CT+ AV+GG LAS+IS++ VA GG+LF+ F + S+ P
Sbjct: 233 ATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYFYP 291
>sp|Q4V899|TM165_RAT Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1
Length = 323
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 18/186 (9%)
Query: 2 TILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---K 55
T LS + G+ A +I R T++++T LF FG+ L + D G+ EE EEV+ K
Sbjct: 141 TCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELK 198
Query: 56 KLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQ 111
K D +F+ N + G+ KK L F SPIF++A ++TF EWGD+SQ
Sbjct: 199 KKDEEFQRTKLLNGPDVETGTSTAIPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQ 253
Query: 112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171
L TI LAA E+P+GV +GG +G LCT AVIGG+ +A +IS + V + GG++F+ F
Sbjct: 254 LTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFS 313
Query: 172 S-FLSP 176
+ F+SP
Sbjct: 314 ALFISP 319
>sp|P52875|TM165_MOUSE Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2
Length = 323
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 110/186 (59%), Gaps = 18/186 (9%)
Query: 2 TILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGEAEEFEEVE---K 55
T LS + G+ A +I R T++++T LF FG+ L + D G+ EE EEV+ K
Sbjct: 141 TCLSVLFGY-ATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ-EELEEVQAELK 198
Query: 56 KLDADFKA----NAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQ 111
K D +F+ N + G+ KK L F SPIF++A ++TF EWGD+SQ
Sbjct: 199 KKDEEFQRTKLLNGPDVETGTSTAIPQKK-----WLHFISPIFVQALTLTFLAEWGDRSQ 253
Query: 112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171
L TI LAA E+P+GV +GG +G LCT AVIGG+ +A +IS + V + GG++F+ F
Sbjct: 254 LTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFS 313
Query: 172 S-FLSP 176
+ F+SP
Sbjct: 314 ALFISP 319
>sp|Q10320|YD68_SCHPO GDT1-like protein C17G8.08c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC17G8.08c PE=3 SV=1
Length = 287
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 107/190 (56%), Gaps = 17/190 (8%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA--FSDGGEA--EEFEEVEKK 56
MT+L ++G AP L RKLT + VLF FG+ L +A D E+ +EF+ V +
Sbjct: 93 MTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNE 152
Query: 57 LDA----DFKANAGA---------TKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFF 103
+ A D GA ++ G +LK + R + FSP+F+KAF++TF
Sbjct: 153 IAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFV 212
Query: 104 GEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGV 163
EWGD+SQ+ATI +AA +N +GV +G +G A CT AVI GK ++++I V GG+
Sbjct: 213 SEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGI 272
Query: 164 LFIVFGIQSF 173
LFI FG+ F
Sbjct: 273 LFIAFGLVYF 282
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 53 VEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQL 112
V KK+ + A+ A K +E+ R FL S IF + S+ F E GDK+ +
Sbjct: 18 VAKKIVGEGMADVSAIKH----PEEVHPTNRDFLR---SLIF--SISMIFGCEIGDKTFI 68
Query: 113 ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS 172
LA + + V G + T V+ G + K+ + GGVLF++FGI+
Sbjct: 69 VAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKM 128
Query: 173 FL 174
+
Sbjct: 129 LM 130
>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500
PE=2 SV=1
Length = 282
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 13/176 (7%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MTILS +G + PNLISRK T+ TVL+ FGL L+ A+ +A + +E+E+ +
Sbjct: 118 MTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKL 177
Query: 61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
K R +F +PIFL++F +TF EWGD+SQ+ATI LA
Sbjct: 178 EAGQG-------------KSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATH 224
Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
+N GV +G +G +CT+ AV+GG LAS+IS+ VA GG+LF+ F + S+ P
Sbjct: 225 KNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYP 280
>sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3
SV=1
Length = 281
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 13/176 (7%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDAD 60
MTILS +G + PNLISRK T+ TVL+ FGL L+ A+ +A + +E+E+ +
Sbjct: 117 MTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKL 176
Query: 61 FKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
K R +F +PIFL++F +TF EWGD+SQ+ATI LA
Sbjct: 177 EAGQG-------------KSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATH 223
Query: 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176
+N GV +G +G +CT+ AV+GG LAS+IS+ VA GG+LF+ F + S+ P
Sbjct: 224 KNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYP 279
>sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll0615 PE=3 SV=1
Length = 206
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 98/179 (54%), Gaps = 23/179 (12%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA--EEFEEVEKKLD 58
MTILS ++G + L +R + ++ LF FG LWDA A EE E+ EK +
Sbjct: 48 MTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDARRIKATANLEEMEDAEKAI- 105
Query: 59 ADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLA 118
+ + +LK R + I +++F++TF EWGD++Q+ATI LA
Sbjct: 106 -------------ASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALA 146
Query: 119 ADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177
A N +GV G I+G +C AV+GGK +A +ISEK V L GG+LF +F + S+ + +
Sbjct: 147 ASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205
>sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana
GN=At4g13590 PE=1 SV=2
Length = 359
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 1 MTILSAVVGWVAPNLISR-----KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEK 55
MTILS V+G + ++ ++ + + L FGL S+ DA+ + VE
Sbjct: 189 MTILSVVIGKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAW-------DLPPVEA 241
Query: 56 KLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATI 115
K + G E +EL K++ L I K+FS+ FF EWGD+S LAT+
Sbjct: 242 KNGEETGIELGEYSEA----EELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATV 297
Query: 116 GLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173
L A ++P GV G I G + T A++GG LA+ ISEK+V GG LF+VF +F
Sbjct: 298 ALGAAQSPLGVASGAIAGHLVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATF 355
>sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os11g0544500 PE=2 SV=1
Length = 347
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 19/179 (10%)
Query: 1 MTILSAVVGWVAPNLISR-----KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEK 55
MTI+S ++G + ++ ++ + + L FG S+ DA+ ++
Sbjct: 178 MTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAW----------QLPD 227
Query: 56 KLDADFKANAGATKEGSKAD-DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLAT 114
+ + + N ++ G A+ +EL K++ L + K+FS+ FF EWGD+S LAT
Sbjct: 228 NANGNLQGN---SESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLAT 284
Query: 115 IGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173
I L A ++PFGV G I G + T A++GG LA+ +SEK+V L GGVLF++F + +F
Sbjct: 285 IALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKLVGLIGGVLFLLFAVATF 343
>sp|P38301|GDT1_YEAST GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1
Length = 280
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 23/190 (12%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEA------------- 47
MTILS VVG A +S + T +LF FG + +A
Sbjct: 85 MTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEI 144
Query: 48 ------EEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSIT 101
++ ++VEK D + G K ++ + F+ FSP++++ F +
Sbjct: 145 AIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIR-ELASFM---FSPVWVQIFLMV 200
Query: 102 FFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSG 161
F GE GD+SQ++ I +A D + + V+ G +IG A+C+ AV+GGK LA++IS + + L+
Sbjct: 201 FLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLAS 260
Query: 162 GVLFIVFGIQ 171
+LF +F +
Sbjct: 261 SLLFFIFALM 270
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 94 FLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQIS 153
FL + S+ E GDK+ L +A V A+ T + + G S + +S
Sbjct: 42 FLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLS 101
Query: 154 EKIVALSGGVLFIVFGIQ 171
E+ A G+LF+VFG +
Sbjct: 102 ERYTAFFAGILFLVFGYK 119
>sp|Q9P7Q0|YLY5_SCHPO GDT1-like protein C186.05c OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPAC186.05c PE=3 SV=1
Length = 262
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 16/186 (8%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAF----SDGGEAEEFEEVEKK 56
MT + +VG AP L + +TH + LF FG+ L ++ S EF++VEK
Sbjct: 70 MTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKI 129
Query: 57 L--DADFKAN-----AGATKEGSKADDELKK-----QRRPFLLQFFSPIFLKAFSITFFG 104
+ + D K + + S D+ K + + FS F+KAF++ F
Sbjct: 130 IVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVS 189
Query: 105 EWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVL 164
E GD+SQ+ATI ++A E V +G IG LCT AVI G+ ++++I V GG++
Sbjct: 190 ELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAVIVGRYISNKIEMYKVLFFGGIV 249
Query: 165 FIVFGI 170
F++FGI
Sbjct: 250 FMIFGI 255
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 105 EWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVL 164
E GDKS + T LA V G + T+ AV+ G++ + I + GG L
Sbjct: 38 ELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTL 97
Query: 165 FIVFGIQ 171
F++FG++
Sbjct: 98 FLIFGVK 104
>sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0221700 PE=3 SV=2
Length = 341
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 98 FSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIV 157
F + F EWGDKS +TI LAA +P GV+ G + G A+ T AV+GG L + +SEKIV
Sbjct: 260 FVLVFIAEWGDKSFFSTIALAAASSPLGVIAGSLAGHAVATLIAVLGGSLLGTFLSEKIV 319
Query: 158 ALSGGVLFIVFGIQSFLSPVKS 179
A GG LF+ F + + V S
Sbjct: 320 AYIGGSLFLAFAAVTLVEIVNS 341
>sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica
GN=OsI_00941 PE=3 SV=2
Length = 341
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 98 FSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIV 157
F + F EWGDKS +TI LAA +P GV+ G + G A+ T AV+GG L + +SEKIV
Sbjct: 260 FVLVFIAEWGDKSFFSTIALAAASSPLGVIAGSLAGHAVATLIAVLGGSLLGTFLSEKIV 319
Query: 158 ALSGGVLFIVFGIQSFLSPVKS 179
A GG LF+ F + + V S
Sbjct: 320 AYIGGSLFLAFAAVTLVEIVNS 341
>sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana
GN=At1g64150 PE=2 SV=2
Length = 370
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 86/188 (45%), Gaps = 47/188 (25%)
Query: 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFG-------------------LWSLWDAF 41
MTI+S V+G + H++ VL F FG + +L DA
Sbjct: 202 MTIISVVLG---------RTFHYVDEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAV 252
Query: 42 SDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAFSIT 101
SD G+A+E E+ E +L + GA + + + F++
Sbjct: 253 SDEGKADE-EQKEAELAVSELSGNGAGIVAA------------------ANTIISTFALV 293
Query: 102 FFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSG 161
F EWGDKS +TI LAA +P GV+ G + G T AV+GG L + +SEK +A G
Sbjct: 294 FVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLAVLGGSLLGNFLSEKAIAYVG 353
Query: 162 GVLFIVFG 169
GVLF+VF
Sbjct: 354 GVLFLVFA 361
>sp|B6H768|UTP25_PENCW U3 small nucleolar RNA-associated protein 25 OS=Penicillium
chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin
54-1255) GN=utp25 PE=3 SV=1
Length = 715
Score = 33.1 bits (74), Expect = 0.93, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 42 SDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPF--LLQFFSP 92
S GGE + E+ +++LD D + EGS +D+E + RP+ LLQ P
Sbjct: 50 SSGGEDDASEQSQEELDDDTLMD-----EGSSSDEEDENTERPYNELLQLLQP 97
>sp|Q8DRA5|DPO3_STRR6 DNA polymerase III PolC-type OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=polC PE=3 SV=1
Length = 1463
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 16 ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKAD 75
I R + H I+ V F F FS+ E F E++K L +F +K G+KA
Sbjct: 29 IERVVVHKISKVWEFHF-------VFSNILPIEIFLELKKGLSEEF------SKTGNKAV 75
Query: 76 DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN 122
E+K + + F Q + +AFS G KS + + A+ N
Sbjct: 76 FEIKARSQEFSNQLLQSYYREAFSEGPCASQGFKSLYQNLQVRAEGN 122
>sp|Q97SQ2|DPO3_STRPN DNA polymerase III PolC-type OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=polC PE=3 SV=1
Length = 1463
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 16 ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKAD 75
I R + H I+ V F F FS+ E F E++K L +F +K G+KA
Sbjct: 29 IERVVVHKISKVWEFHF-------VFSNILPIEIFLELKKGLSEEF------SKTGNKAV 75
Query: 76 DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN 122
E+K + + F Q + +AFS G KS + + A+ N
Sbjct: 76 FEIKARSQEFSNQLLQSYYREAFSEGPCASQGFKSLYQNLQVRAEGN 122
>sp|Q04MH6|DPO3_STRP2 DNA polymerase III PolC-type OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=polC PE=3 SV=1
Length = 1463
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 16 ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKAD 75
I R + H I+ V F F FS+ E F E++K L +F +K G+KA
Sbjct: 29 IERVVVHKISKVWEFHF-------VFSNILPIEIFLELKKGLSEEF------SKTGNKAV 75
Query: 76 DELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN 122
E+K + + F Q + +AFS G KS + + A+ N
Sbjct: 76 FEIKARSQEFSNQLLQSYYREAFSEGPCASQGFKSLYQNLQVRAEGN 122
>sp|Q21MU7|GCP_SACD2 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
DSM 17024) GN=gcp PE=3 SV=1
Length = 341
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 23 HITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQR 82
H V G G + L D E F++ K +D D+ K +K D K
Sbjct: 138 HTQLVEVQGIGKYVLLGESLDDAAGEAFDKAAKMMDLDYPGGPNIAKLATKGDVSRFKFP 197
Query: 83 RPFLLQF---FSPIFLKAFSITFFGEWGDKSQLATIGLAAD 120
RP + FS LK F++ ++ D++ L AD
Sbjct: 198 RPMTDRPGLDFSFSGLKTFTLNTVAKYADETGLPDDQTCAD 238
>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1
Length = 582
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 4 LSAVVGWVAPNLISRK---LTHHI----TTVLFFGF---GLWSLWDAFSDGGEAEEFEEV 53
++AV WV+ ++S LTH + T +LF GF GL+ +W + + +FEEV
Sbjct: 498 IAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFFIWLLVPET-KGLQFEEV 556
Query: 54 EKKLDADFKANAGATKE 70
EK L+ FK + +E
Sbjct: 557 EKLLEVGFKPSLLRRRE 573
>sp|Q2L2R8|HLDD_BORA1 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Bordetella avium
(strain 197N) GN=hldD PE=3 SV=1
Length = 332
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 34 LWSLWDAFSDGGEAEEFEEVEKKLDADFK 62
L+S WD ++DGG++ +F VE +D +
Sbjct: 198 LFSGWDGYADGGQSRDFISVEDVVDVNLH 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,495,802
Number of Sequences: 539616
Number of extensions: 2724184
Number of successful extensions: 7544
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 7482
Number of HSP's gapped (non-prelim): 56
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)