Query 030301
Match_columns 179
No_of_seqs 165 out of 1114
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 11:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 3.4E-47 7.4E-52 321.7 11.9 179 1-179 112-294 (294)
2 COG2119 Predicted membrane pro 100.0 6.2E-37 1.3E-41 248.3 13.5 139 1-177 47-186 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 6.2E-27 1.3E-31 167.1 6.8 76 94-169 1-78 (78)
4 COG2119 Predicted membrane pro 99.8 7.5E-20 1.6E-24 148.8 9.5 84 93-176 3-86 (190)
5 KOG2881 Predicted membrane pro 99.8 4.4E-19 9.5E-24 150.9 7.2 89 90-178 65-153 (294)
6 PRK11469 hypothetical protein; 98.6 1.1E-06 2.4E-11 72.1 12.4 136 1-177 50-186 (188)
7 TIGR02840 spore_YtaF putative 98.4 7.9E-06 1.7E-10 67.8 11.9 44 1-44 43-86 (206)
8 COG1971 Predicted membrane pro 98.2 5.4E-05 1.2E-09 62.4 13.2 41 3-43 48-91 (190)
9 PF01169 UPF0016: Uncharacteri 97.7 3.7E-05 8E-10 54.8 3.2 33 1-33 46-78 (78)
10 PF01810 LysE: LysE type trans 97.5 0.0035 7.6E-08 50.0 13.2 126 19-176 60-191 (191)
11 COG4280 Predicted membrane pro 97.4 0.00058 1.3E-08 57.1 7.3 144 3-176 49-199 (236)
12 COG0730 Predicted permeases [G 95.7 0.19 4.2E-06 42.1 11.0 159 3-177 84-255 (258)
13 PF01925 TauE: Sulfite exporte 95.6 0.43 9.4E-06 39.0 12.7 45 127-171 195-239 (240)
14 PRK10621 hypothetical protein; 95.5 0.82 1.8E-05 38.7 14.5 46 131-176 209-254 (266)
15 COG4280 Predicted membrane pro 95.2 0.034 7.3E-07 46.7 4.7 67 109-176 17-85 (236)
16 TIGR02840 spore_YtaF putative 95.1 0.041 8.8E-07 45.7 5.1 54 124-177 30-83 (206)
17 TIGR00949 2A76 The Resistance 95.1 1.1 2.4E-05 35.5 13.2 27 14-40 48-76 (185)
18 PF01914 MarC: MarC family int 94.7 0.49 1.1E-05 39.1 10.5 139 3-177 52-199 (203)
19 PF03741 TerC: Integral membra 94.6 1.3 2.8E-05 36.1 12.6 58 112-174 125-182 (183)
20 PRK10995 inner membrane protei 94.6 0.65 1.4E-05 38.8 11.1 39 3-41 56-96 (221)
21 PF03596 Cad: Cadmium resistan 94.0 0.17 3.6E-06 41.9 6.2 135 5-176 43-182 (191)
22 TIGR03718 R_switched_Alx integ 93.9 2.9 6.2E-05 37.0 14.1 72 102-176 196-270 (302)
23 TIGR03716 R_switched_YkoY inte 93.9 1.4 3E-05 37.1 11.5 54 120-176 121-174 (215)
24 TIGR03717 R_switched_YjbE inte 93.3 2.8 6E-05 34.0 12.1 122 4-175 49-175 (176)
25 COG4300 CadD Predicted permeas 92.4 0.28 6E-06 40.7 5.0 38 3-40 51-88 (205)
26 COG1280 RhtB Putative threonin 92.0 4.6 9.9E-05 33.2 12.0 23 154-176 185-207 (208)
27 PRK11469 hypothetical protein; 92.0 0.3 6.4E-06 40.1 4.8 42 135-177 48-89 (188)
28 PRK10229 threonine efflux syst 91.8 5.9 0.00013 32.0 12.3 21 155-175 185-205 (206)
29 PRK10019 nickel/cobalt efflux 91.0 10 0.00022 33.2 13.8 71 100-177 199-274 (279)
30 PRK10958 leucine export protei 90.6 8.4 0.00018 31.6 14.1 21 155-175 190-210 (212)
31 PRK11111 hypothetical protein; 90.4 8.8 0.00019 32.1 12.2 38 3-40 58-97 (214)
32 TIGR00427 membrane protein, Ma 89.9 5.3 0.00011 33.0 10.4 138 3-176 55-200 (201)
33 PRK09304 arginine exporter pro 89.5 10 0.00022 30.9 13.5 24 154-177 180-203 (207)
34 PF02659 DUF204: Domain of unk 87.1 1.9 4E-05 29.1 5.0 37 132-169 31-67 (67)
35 PRK10520 rhtB homoserine/homos 86.9 15 0.00032 29.7 12.8 22 154-175 182-203 (205)
36 PF03239 FTR1: Iron permease F 86.8 20 0.00044 31.2 12.6 81 91-174 133-215 (306)
37 PRK00293 dipZ thiol:disulfide 84.7 37 0.0008 32.3 14.9 33 5-37 230-262 (571)
38 PF03596 Cad: Cadmium resistan 82.8 9.6 0.00021 31.5 8.2 56 121-177 23-78 (191)
39 PRK10739 putative antibiotic t 82.5 14 0.0003 30.5 9.1 38 3-40 52-91 (197)
40 COG2095 MarC Multiple antibiot 81.1 13 0.00028 31.0 8.4 134 4-176 56-195 (203)
41 PRK10323 cysteine/O-acetylseri 80.7 28 0.00061 28.0 14.7 35 138-174 161-195 (195)
42 PF02659 DUF204: Domain of unk 80.2 2.4 5.2E-05 28.5 3.2 32 1-33 36-67 (67)
43 TIGR00779 cad cadmium resistan 79.7 8.7 0.00019 31.9 6.9 56 120-176 21-76 (193)
44 COG1971 Predicted membrane pro 78.1 4.5 9.7E-05 33.6 4.7 43 135-178 48-90 (190)
45 TIGR00145 FTR1 family protein. 74.7 58 0.0013 28.4 14.2 47 127-174 154-200 (283)
46 PF13386 DsbD_2: Cytochrome C 68.1 62 0.0013 26.0 12.4 40 127-171 160-199 (199)
47 COG0730 Predicted permeases [G 67.4 28 0.00061 29.0 7.3 55 122-176 67-121 (258)
48 PRK10621 hypothetical protein; 65.9 19 0.0004 30.5 6.0 49 126-174 75-123 (266)
49 PF01810 LysE: LysE type trans 62.9 27 0.00058 27.5 6.0 56 122-177 25-82 (191)
50 COG0861 TerC Membrane protein 62.6 1E+02 0.0022 26.6 13.1 62 110-176 151-212 (254)
51 PF01925 TauE: Sulfite exporte 62.5 17 0.00036 29.5 4.9 45 131-175 66-110 (240)
52 TIGR00704 NaPi_cotrn_rel Na/Pi 61.5 1.2E+02 0.0025 26.9 10.4 24 19-42 3-26 (307)
53 PRK00259 intracellular septati 60.8 27 0.00059 28.4 5.8 46 127-174 22-67 (179)
54 PF07690 MFS_1: Major Facilita 60.0 47 0.001 27.2 7.3 19 16-34 148-166 (352)
55 COG2215 ABC-type uncharacteriz 58.7 1.1E+02 0.0025 27.1 9.6 29 14-42 126-154 (303)
56 COG4300 CadD Predicted permeas 58.0 1.1E+02 0.0024 25.6 9.6 75 102-177 12-89 (205)
57 TIGR00704 NaPi_cotrn_rel Na/Pi 55.3 71 0.0015 28.2 7.9 46 123-168 208-255 (307)
58 TIGR00949 2A76 The Resistance 54.2 40 0.00087 26.4 5.7 54 122-175 20-75 (185)
59 PRK00293 dipZ thiol:disulfide 54.0 39 0.00084 32.2 6.4 48 126-173 215-262 (571)
60 COG1283 NptA Na+/phosphate sym 53.9 1.7E+02 0.0037 28.1 10.6 95 19-143 6-105 (533)
61 PRK10995 inner membrane protei 50.8 72 0.0016 26.5 6.9 37 140-176 57-95 (221)
62 TIGR00779 cad cadmium resistan 50.4 33 0.00071 28.5 4.7 35 6-40 42-76 (193)
63 COG1238 Predicted membrane pro 48.6 1.4E+02 0.003 24.0 7.9 64 91-155 20-83 (161)
64 PRK10019 nickel/cobalt efflux 47.1 41 0.0009 29.4 5.0 24 154-177 87-110 (279)
65 TIGR00948 2a75 L-lysine export 46.7 1.4E+02 0.003 23.3 11.3 22 20-41 57-78 (177)
66 PF14007 YtpI: YtpI-like prote 43.4 49 0.0011 24.1 4.2 28 15-42 52-79 (89)
67 PRK10229 threonine efflux syst 41.9 1.8E+02 0.0039 23.2 8.0 74 102-176 15-93 (206)
68 TIGR00997 ispZ intracellular s 41.0 79 0.0017 25.8 5.5 46 127-174 22-67 (178)
69 PF02683 DsbD: Cytochrome C bi 38.4 1.2E+02 0.0025 24.6 6.2 46 126-173 47-92 (211)
70 COG2215 ABC-type uncharacteriz 38.1 95 0.0021 27.6 5.9 73 104-176 70-152 (303)
71 COG2917 Intracellular septatio 38.1 1E+02 0.0022 25.4 5.7 47 127-175 22-68 (180)
72 TIGR03717 R_switched_YjbE inte 37.1 44 0.00096 27.0 3.5 50 123-176 33-82 (176)
73 PF13150 DUF3989: Protein of u 36.7 60 0.0013 23.4 3.8 28 148-175 18-45 (85)
74 PF01914 MarC: MarC family int 36.0 1.7E+02 0.0038 23.9 6.9 38 140-177 53-92 (203)
75 TIGR00948 2a75 L-lysine export 35.9 1.3E+02 0.0028 23.5 6.0 62 115-176 13-77 (177)
76 PF04955 HupE_UreJ: HupE / Ure 35.8 1E+02 0.0023 25.0 5.5 47 124-171 133-179 (180)
77 PF08229 SHR3_chaperone: ER me 35.2 62 0.0013 27.0 4.1 15 27-41 140-154 (196)
78 PF14007 YtpI: YtpI-like prote 35.2 80 0.0017 23.0 4.2 24 153-176 54-77 (89)
79 TIGR02230 ATPase_gene1 F0F1-AT 34.7 84 0.0018 23.4 4.3 24 133-156 51-74 (100)
80 PF02683 DsbD: Cytochrome C bi 33.7 2.5E+02 0.0055 22.6 13.7 21 154-174 191-211 (211)
81 PF13347 MFS_2: MFS/sugar tran 33.2 2.4E+02 0.0053 24.7 7.9 40 133-172 268-307 (428)
82 PF11118 DUF2627: Protein of u 32.3 1.9E+02 0.0041 20.7 5.8 31 142-173 27-57 (77)
83 COG3817 Predicted membrane pro 31.9 73 0.0016 28.1 4.1 25 16-40 3-27 (313)
84 COG0395 UgpE ABC-type sugar tr 31.0 3.5E+02 0.0075 23.4 8.3 18 91-108 197-214 (281)
85 PRK11102 bicyclomycin/multidru 30.9 3.2E+02 0.0069 22.9 12.7 29 137-165 242-270 (377)
86 PF11139 DUF2910: Protein of u 30.8 2.9E+02 0.0063 22.4 13.0 24 17-40 67-90 (214)
87 KOG0569 Permease of the major 29.7 4.8E+02 0.01 24.6 12.0 41 130-170 310-350 (485)
88 COG1280 RhtB Putative threonin 29.7 1.6E+02 0.0035 24.0 5.7 55 122-176 38-94 (208)
89 TIGR03758 conj_TIGR03758 integ 29.3 95 0.0021 21.4 3.6 31 11-42 14-44 (65)
90 PF11139 DUF2910: Protein of u 29.3 2E+02 0.0042 23.4 6.2 54 123-176 31-90 (214)
91 PRK10323 cysteine/O-acetylseri 28.9 2E+02 0.0043 23.0 6.1 67 110-176 23-94 (195)
92 PF11295 DUF3096: Protein of u 27.3 1.6E+02 0.0035 18.3 4.7 34 3-38 2-35 (39)
93 PRK00944 hypothetical protein; 27.1 2.4E+02 0.0051 23.6 6.1 49 127-176 125-173 (195)
94 PF03741 TerC: Integral membra 27.0 2.6E+02 0.0056 22.6 6.4 53 121-176 29-81 (183)
95 TIGR00900 2A0121 H+ Antiporter 26.6 3.5E+02 0.0077 22.0 13.9 27 9-35 148-174 (365)
96 COG2814 AraJ Arabinose efflux 26.2 5.1E+02 0.011 23.7 11.8 38 2-39 150-189 (394)
97 PRK10520 rhtB homoserine/homos 25.7 2.4E+02 0.0053 22.5 6.1 75 101-176 15-94 (205)
98 PF06166 DUF979: Protein of un 25.4 1.1E+02 0.0025 27.2 4.3 22 19-40 2-23 (308)
99 PF06166 DUF979: Protein of un 24.4 3.9E+02 0.0084 23.9 7.4 50 90-150 94-143 (308)
100 TIGR00901 2A0125 AmpG-related 24.3 4.2E+02 0.0091 22.1 13.7 26 138-163 258-283 (356)
101 PF05360 YiaAB: yiaA/B two hel 24.2 2.1E+02 0.0045 18.5 6.1 48 130-177 4-51 (53)
102 PF02535 Zip: ZIP Zinc transpo 22.2 4.1E+02 0.0088 22.2 7.0 44 130-173 235-285 (317)
103 PRK09509 fieF ferrous iron eff 22.0 3.6E+02 0.0079 23.0 6.8 43 16-58 177-223 (299)
104 PRK10739 putative antibiotic t 21.9 4.4E+02 0.0096 21.6 6.9 37 140-176 53-91 (197)
105 PF09930 DUF2162: Predicted tr 21.9 4.9E+02 0.011 22.0 8.7 21 20-40 69-89 (224)
106 PF10063 DUF2301: Uncharacteri 21.5 1.6E+02 0.0035 23.1 4.0 35 6-41 86-123 (135)
107 PF06724 DUF1206: Domain of Un 21.3 1.3E+02 0.0029 20.2 3.2 24 19-42 47-70 (73)
108 PRK03557 zinc transporter ZitB 21.2 2.8E+02 0.006 24.0 5.9 26 17-42 185-210 (312)
109 TIGR00145 FTR1 family protein. 20.9 2.6E+02 0.0055 24.4 5.6 51 123-173 38-95 (283)
110 PF09527 ATPase_gene1: Putativ 20.8 2.4E+02 0.0051 17.9 4.9 44 131-174 7-51 (55)
111 PRK11111 hypothetical protein; 20.1 4.9E+02 0.011 21.6 6.9 36 140-175 59-96 (214)
112 PRK11195 lysophospholipid tran 20.0 2.9E+02 0.0064 24.0 5.9 69 99-167 10-80 (393)
113 PF04279 IspA: Intracellular s 20.0 2.8E+02 0.0061 22.3 5.3 44 129-174 24-67 (176)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.4e-47 Score=321.74 Aligned_cols=179 Identities=52% Similarity=0.797 Sum_probs=157.9
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc--CCCChhhHHHHHHhhhhhhhhccc--cccCCCCCch
Q 030301 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS--DGGEAEEFEEVEKKLDADFKANAG--ATKEGSKADD 76 (179)
Q Consensus 1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~--~~~~~ee~~E~~~~~~~~~~~~~~--~~~~~~~~~~ 76 (179)
||+||+++|+..|+++|+.|+++++++||++||+|||+|+++ +++.+||.||+|+|++.++.+.+. +...+....+
T Consensus 112 MTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~ 191 (294)
T KOG2881|consen 112 MTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELAKREDELDRLEEGLPGSAETG 191 (294)
T ss_pred HHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHhccchhhhhhhcCCCCCccc
Confidence 899999999999999999999999999999999999999986 455689999999999877655431 1111111122
Q ss_pred HhhhhhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHH
Q 030301 77 ELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKI 156 (179)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~ 156 (179)
+.+++.|+.++.+++|.|+++|.++|++|||||||++|++||++.||++|++|+.+||.+||++||+.|++++++|++|.
T Consensus 192 ~~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rt 271 (294)
T KOG2881|consen 192 SQKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRT 271 (294)
T ss_pred hhhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEE
Confidence 33356688888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccCC
Q 030301 157 VALSGGVLFIVFGIQSFLSPVKS 179 (179)
Q Consensus 157 i~~~~g~lFl~fg~~~l~~~~~~ 179 (179)
+.+++|++|+.||+..+++.++.
T Consensus 272 Vt~~ggi~Fi~Fgl~~i~~~~~~ 294 (294)
T KOG2881|consen 272 VTLIGGILFIIFGLVYIFQGFDA 294 (294)
T ss_pred EEEecchhHHHHHHHHHhcCCCC
Confidence 99999999999999999998863
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.2e-37 Score=248.32 Aligned_cols=139 Identities=32% Similarity=0.588 Sum_probs=123.8
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhh
Q 030301 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 80 (179)
Q Consensus 1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
||.+|+++|++.++++|+++++|..+.+|++||+|+++|+.. ++|| .+
T Consensus 47 m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk~---~~~e---~~-------------------------- 94 (190)
T COG2119 47 MHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDKE---DDEE---AQ-------------------------- 94 (190)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccccc---cccc---cc--------------------------
Confidence 899999999999999999999999999999999999999832 1221 10
Q ss_pred hhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccC-CcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 030301 81 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVAL 159 (179)
Q Consensus 81 ~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~-~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~ 159 (179)
..++ +.+|.++|.++|++|||||||++|++||++|+ |+.|++|+++||++||+++|++|+++++|+|+|.++.
T Consensus 95 ~~~~------~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~ 168 (190)
T COG2119 95 AASP------RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRF 168 (190)
T ss_pred cccc------ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 0011 25899999999999999999999999999975 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 030301 160 SGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 160 ~~g~lFl~fg~~~l~~~~ 177 (179)
++|++|++||+..+|+..
T Consensus 169 ~aallFl~fal~~~~~~~ 186 (190)
T COG2119 169 IAALLFLIFALVLLWQVF 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998888754
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.94 E-value=6.2e-27 Score=167.05 Aligned_cols=76 Identities=47% Similarity=0.727 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhccc--CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 030301 94 FLKAFSITFFGEWGDKSQLATIGLAADE--NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 169 (179)
Q Consensus 94 ~~~af~~~flaE~GDKTQl~t~~Laa~~--~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg 169 (179)
|+++|.++|++|||||||++|+.||+|| +|++|++|+.+|++++|++++++|+++.+++|++++++++|++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999999999997
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.81 E-value=7.5e-20 Score=148.79 Aligned_cols=84 Identities=29% Similarity=0.386 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 030301 93 IFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS 172 (179)
Q Consensus 93 ~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~ 172 (179)
.+..+..++++||+|||||+.++.||+||+|++|+.|...+++.+|.+++++|++....+|+++.++.++++|++||+|+
T Consensus 3 ~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~ 82 (190)
T COG2119 3 ALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWM 82 (190)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 030301 173 FLSP 176 (179)
Q Consensus 173 l~~~ 176 (179)
+++.
T Consensus 83 l~ed 86 (190)
T COG2119 83 LIED 86 (190)
T ss_pred hccc
Confidence 9876
No 5
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.77 E-value=4.4e-19 Score=150.95 Aligned_cols=89 Identities=25% Similarity=0.318 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 030301 90 FSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 169 (179)
Q Consensus 90 ~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg 169 (179)
+.+.|..++.++|++|+||||+++++.||+||+...|+.|+..|++++|.+++.+|+.-.+.+|.++.+++++++|++||
T Consensus 65 ~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFG 144 (294)
T KOG2881|consen 65 FLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFG 144 (294)
T ss_pred HHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccC
Q 030301 170 IQSFLSPVK 178 (179)
Q Consensus 170 ~~~l~~~~~ 178 (179)
+++|+++++
T Consensus 145 lkmL~eg~~ 153 (294)
T KOG2881|consen 145 LKMLKEGWE 153 (294)
T ss_pred HHHHHHhhc
Confidence 999999864
No 6
>PRK11469 hypothetical protein; Provisional
Probab=98.59 E-value=1.1e-06 Score=72.10 Aligned_cols=136 Identities=20% Similarity=0.295 Sum_probs=82.6
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhh
Q 030301 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 80 (179)
Q Consensus 1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
|+.++-.+|+.+.+++|+ +.||++..+.++.|.||++|++++++++++ +.+ . +
T Consensus 50 m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~~~~~~~--~~~---~---------------------~ 102 (188)
T PRK11469 50 TPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRGADDEDE--EPR---R---------------------R 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccccc--ccc---c---------------------C
Confidence 678889999999888777 779999999999999999999864322111 000 0 0
Q ss_pred hhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcc-cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 030301 81 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVAL 159 (179)
Q Consensus 81 ~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~-~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~ 159 (179)
.+. +..+..++.+-. ..--+-++++.- .|++...+-.-+--++++..++..|+.+++++ .++..+
T Consensus 103 --~~~-----~~~l~LaiAtSi------DAlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~ 168 (188)
T PRK11469 103 --HGF-----WLLVTTAIATSL------DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEI 168 (188)
T ss_pred --CCH-----HHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 000 011111111000 000111222211 24444444444555667777777888777654 567899
Q ss_pred HHHHHHHHHHHHHhcccc
Q 030301 160 SGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 160 ~~g~lFl~fg~~~l~~~~ 177 (179)
++|++.++.|++.+++..
T Consensus 169 lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 169 LGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999987653
No 7
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=98.35 E-value=7.9e-06 Score=67.81 Aligned_cols=44 Identities=18% Similarity=0.539 Sum_probs=40.7
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 030301 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDG 44 (179)
Q Consensus 1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~ 44 (179)
||.++..+|+.+..++|+++.+|++++++++.|+||++|.++++
T Consensus 43 ~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 43 FIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68899999999999999999999999999999999999998643
No 8
>COG1971 Predicted membrane protein [Function unknown]
Probab=98.19 E-value=5.4e-05 Score=62.43 Aligned_cols=41 Identities=24% Similarity=0.534 Sum_probs=35.4
Q ss_pred hHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHHhhhhhcC
Q 030301 3 ILSAVVGWVAPNLIS---RKLTHHITTVLFFGFGLWSLWDAFSD 43 (179)
Q Consensus 3 ~lsv~~G~~l~~~lp---~~~~~~~aa~lF~~FG~~~L~~~~~~ 43 (179)
.++-++|.+...++| ..+-||++.++..+.|+||++|+.++
T Consensus 48 ~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~ 91 (190)
T COG1971 48 AIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKN 91 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 466677888877777 78899999999999999999999874
No 9
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=97.68 E-value=3.7e-05 Score=54.76 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=31.7
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 030301 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 33 (179)
Q Consensus 1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG 33 (179)
||.+++.+|+++++.+|+++++++++++|++||
T Consensus 46 ~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 46 ATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 589999999999999999999999999999997
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=97.54 E-value=0.0035 Score=50.04 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhchhhhhhhhH---HHH
Q 030301 19 KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSP---IFL 95 (179)
Q Consensus 19 ~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 95 (179)
.+++++.++.++++|.+++++..++++++++..+ + .+. .+.-.+.......+| +|+
T Consensus 60 ~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~-~------~~~--------------~~~f~~g~~~~~~NPk~il~~ 118 (191)
T PF01810_consen 60 MILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAK-K------QSK--------------SKSFLTGFLLNLLNPKAILFW 118 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhc-c------ccH--------------HHHHHHHHHHHHHhHHHHHHH
Confidence 4689999999999999999987543221111100 0 000 000000011111122 455
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccH---HHHHHHHHHHHHHHHHHH
Q 030301 96 KAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISE---KIVALSGGVLFIVFGIQS 172 (179)
Q Consensus 96 ~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~---~~i~~~~g~lFl~fg~~~ 172 (179)
.++...|+..-.+.+|.....+ |...+.++...+-...++.+.+++.. +++++++|++++.+|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l 187 (191)
T PF01810_consen 119 LAVFPQFISPEYSSTQFLVFIL-----------GIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYL 187 (191)
T ss_pred HHhhhcccCccccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555556665334444444433 33333334444444444444444433 388999999999999999
Q ss_pred hccc
Q 030301 173 FLSP 176 (179)
Q Consensus 173 l~~~ 176 (179)
++++
T Consensus 188 ~~~g 191 (191)
T PF01810_consen 188 LYSG 191 (191)
T ss_pred HHcC
Confidence 8864
No 11
>COG4280 Predicted membrane protein [Function unknown]
Probab=97.42 E-value=0.00058 Score=57.08 Aligned_cols=144 Identities=23% Similarity=0.319 Sum_probs=93.4
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc------CCCChhhHHHHHHhhhhhhhhccccccCCCCCch
Q 030301 3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFS------DGGEAEEFEEVEKKLDADFKANAGATKEGSKADD 76 (179)
Q Consensus 3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~------~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~ 76 (179)
.++.++|..+ +++|-++.+++++++.+.||.+-.|.... ...+||..| |.+..+.++.
T Consensus 49 ~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~le---E~~~ldq~e~------------ 112 (236)
T COG4280 49 ILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEKLE---EGIVLDQEEE------------ 112 (236)
T ss_pred HHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhhHh---hhhhcccccc------------
Confidence 3566778887 88999999999999999999999997642 112222222 2222111100
Q ss_pred HhhhhhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhccc-CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 030301 77 ELKKQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEK 155 (179)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~-~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~ 155 (179)
. -+ +-.+..+|-...+ | |=.-.++.++|.+.+ ++..-..|+..|.++.-.++.++-+.++ |+|+.
T Consensus 113 ----g-~~------~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pla-rvpe~ 178 (236)
T COG4280 113 ----G-FS------KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLA-RVPEP 178 (236)
T ss_pred ----c-ch------hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh-hCCch
Confidence 0 00 0123333332221 1 222234556666554 5667788899999888888888888885 69999
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q 030301 156 IVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 156 ~i~~~~g~lFl~fg~~~l~~~ 176 (179)
.+++.+|.+...||.+=+-++
T Consensus 179 ~lKfvag~lL~sfGtfWlgeg 199 (236)
T COG4280 179 HLKFVAGALLFSFGTFWLGEG 199 (236)
T ss_pred hHHHHHHHHHHHhhHHHhccc
Confidence 999999999999998665443
No 12
>COG0730 Predicted permeases [General function prediction only]
Probab=95.66 E-value=0.19 Score=42.08 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=87.1
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhh
Q 030301 3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQR 82 (179)
Q Consensus 3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
++.+.+|.++...+|+++.+.+.+.+.++.++++++...+..+ +++.++. ...... ........
T Consensus 84 ~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~------------~~~~~g~~ 147 (258)
T COG0730 84 LIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKA-EDRAARL---RPLLFA------------LALLIGFL 147 (258)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccc---CcchhH------------HHHHHHHH
Confidence 4677888888889999999999999999999999997642000 0000000 000000 00000000
Q ss_pred chhhhhhhh--HHHHHHHHHHHhcccCcHHHHHHHHHh---------cccC--CcEeehHHHHHHHHHHHHHHHHHHHHh
Q 030301 83 RPFLLQFFS--PIFLKAFSITFFGEWGDKSQLATIGLA---------ADEN--PFGVVLGGIIGQALCTTAAVIGGKSLA 149 (179)
Q Consensus 83 ~~~~~~~~~--~~~~~af~~~flaE~GDKTQl~t~~La---------a~~~--~~~V~~G~~~a~~l~t~lav~~G~~l~ 149 (179)
-...+..+. ..+...-.+..+....+|--.+|-... ..|. .-.+-......+.+.+.++...|.++.
T Consensus 148 ~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~ 227 (258)
T COG0730 148 AGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGARLA 227 (258)
T ss_pred HHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 001222223344444433322222111 1111 111112222278899999999999999
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 150 SQISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 150 ~~l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
+++|++.++++-+.+.+..+++++++..
T Consensus 228 ~~~~~~~lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 228 RRLSPKVLRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998876643
No 13
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=95.60 E-value=0.43 Score=38.99 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=39.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~ 171 (179)
.+...+.+...+.++..+|+++.+++|+++++++..++.++.|+.
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 455556688889999999999999999999999999998888875
No 14
>PRK10621 hypothetical protein; Provisional
Probab=95.53 E-value=0.82 Score=38.75 Aligned_cols=46 Identities=9% Similarity=-0.036 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 131 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 131 ~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
.+.+...+.++...|..+.+++|++.++++...+-+..|+.++++.
T Consensus 209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~ 254 (266)
T PRK10621 209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDS 254 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHH
Confidence 3446677889999999999999999999999999999999887654
No 15
>COG4280 Predicted membrane protein [Function unknown]
Probab=95.17 E-value=0.034 Score=46.68 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcc--cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 109 KSQLATIGLAAD--ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 109 KTQl~t~~Laa~--~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
-+-..+++.+-. |++..-+.|+.+|+++.-.++..+|+.+ ..+|.+++++++|++.+.||-.-.+++
T Consensus 17 lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsa 85 (236)
T COG4280 17 LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSA 85 (236)
T ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777743 6788889999999999999999999998 589999999999999999998655544
No 16
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=95.14 E-value=0.041 Score=45.65 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=45.1
Q ss_pred cEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 124 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 124 ~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
+...+-...-+.+++.++..+|+.+.+++|+++-+++++++++++|+++++++.
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444556899999999999999999999999999999999999998763
No 17
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=95.11 E-value=1.1 Score=35.51 Aligned_cols=27 Identities=7% Similarity=0.045 Sum_probs=20.6
Q ss_pred hhhhH--HHHHHHHHHHHHHHHHHHhhhh
Q 030301 14 NLISR--KLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 14 ~~lp~--~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
+..|. .+++++.++-.+++|.+++++.
T Consensus 48 ~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 48 SKSVILFTVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33463 5678888888889999999864
No 18
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=94.75 E-value=0.49 Score=39.15 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=86.4
Q ss_pred hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhhhcCCC-ChhhHHHHHHhhhhhhhhccccccCCCCCchHhh
Q 030301 3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFSDGG-EAEEFEEVEKKLDADFKANAGATKEGSKADDELK 79 (179)
Q Consensus 3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~~~~~~-~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
++..++|+++-+++ +..-.++..+++.+..|+.|++...++++ .++|.+|.+ +..+
T Consensus 52 l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~------~~~~--------------- 110 (203)
T PF01914_consen 52 LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAK------DAED--------------- 110 (203)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhc------cccc---------------
Confidence 35667788876644 77788999999999999999996643211 111111100 0000
Q ss_pred hhhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCC---cEeehHHHHHHHHHHHHHHHHHHHHhhhccH--
Q 030301 80 KQRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVIGGKSLASQISE-- 154 (179)
Q Consensus 80 ~~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~---~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~-- 154 (179)
.... | +. +--=-|.-|=-+++.++++++. ....+++.+...+.+.+.-..++.+.+++.+
T Consensus 111 ~ai~--------P-La------~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g 175 (203)
T PF01914_consen 111 IAIV--------P-LA------IPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTG 175 (203)
T ss_pred ceec--------c-cc------hhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence 0000 0 11 1111355555556666766653 3456666777777788888888888877754
Q ss_pred -HHHHHHHHHHHHHHHHHHhcccc
Q 030301 155 -KIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 155 -~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
+.+.++.|++-..+|+.+..++.
T Consensus 176 ~~vi~Ri~Glil~aiavq~i~~Gl 199 (203)
T PF01914_consen 176 LQVITRIMGLILAAIAVQMILSGL 199 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999998877653
No 19
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=94.65 E-value=1.3 Score=36.14 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=46.7
Q ss_pred HHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 112 LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 112 l~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
++.++++ .+++.++.|...+...+-..+-.+.+.+.++ .++++.++.+-...|+.++.
T Consensus 125 ~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 125 LAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 4555555 7889999999999999999999999998763 67788888888888887764
No 20
>PRK10995 inner membrane protein; Provisional
Probab=94.64 E-value=0.65 Score=38.79 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=31.1
Q ss_pred hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhhh
Q 030301 3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAF 41 (179)
Q Consensus 3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~~ 41 (179)
++..+.|..+-+++ +....++..+++.+.+|++|+++..
T Consensus 56 l~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~ 96 (221)
T PRK10995 56 MVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQ 96 (221)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45677788876655 5667899999999999999998653
No 21
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=94.01 E-value=0.17 Score=41.90 Aligned_cols=135 Identities=15% Similarity=0.140 Sum_probs=72.9
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhch
Q 030301 5 SAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRP 84 (179)
Q Consensus 5 sv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (179)
|...+.. ..++|++|+--+.+.+=++.|+|.+..+ ++||| +|++++.++ ++.+
T Consensus 43 Sl~~~~~-l~~ip~~wiLGlLGliPI~lGi~~l~~~---~~~~e--~~~~~~~~~--------------------~~~~- 95 (191)
T PF03596_consen 43 SLLGAFG-LLFIPPEWILGLLGLIPIYLGIKALFSG---EDDDE--EEAEEKLNS--------------------PKSN- 95 (191)
T ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHcC---CCccc--ccccccccc--------------------cccc-
Confidence 4444444 4689999997888899999999988864 21111 112211110 0001
Q ss_pred hhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhh-----ccHHHHHH
Q 030301 85 FLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQ-----ISEKIVAL 159 (179)
Q Consensus 85 ~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~-----l~~~~i~~ 159 (179)
+.+ -+...+.+|-=||+==+=+=.+|+.. +.=+.-...-..++.++-+.+++.++++ +=+|+=++
T Consensus 96 -------~~i-~~Va~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~ 165 (191)
T PF03596_consen 96 -------SLI-LTVAAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRW 165 (191)
T ss_pred -------chh-HHhhhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhccc
Confidence 111 11122333334443211111111110 1111223344556677778888887643 23677789
Q ss_pred HHHHHHHHHHHHHhccc
Q 030301 160 SGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 160 ~~g~lFl~fg~~~l~~~ 176 (179)
+.-++|+..|++.++++
T Consensus 166 l~p~v~I~LGi~Il~es 182 (191)
T PF03596_consen 166 LVPIVYIGLGIYILIES 182 (191)
T ss_pred HHHHHHHHhCceeeEeC
Confidence 99999999999888764
No 22
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=93.93 E-value=2.9 Score=37.02 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=51.0
Q ss_pred HhcccCcHHHH---HHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 102 FFGEWGDKSQL---ATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 102 flaE~GDKTQl---~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
..-|.=|-.+= ..+..|...+|+.|+.+...|....-.+.-++.+.+.+ -.++++.++.+-...|+.++.+.
T Consensus 196 i~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~r---f~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 196 VLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLER---FHYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455565442 23444555789999999998887766666667777755 36788888888889999888763
No 23
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=93.90 E-value=1.4 Score=37.11 Aligned_cols=54 Identities=28% Similarity=0.254 Sum_probs=43.8
Q ss_pred ccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 120 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 120 ~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
..+|+.++.|...+...+-..+-.+.+++.++ .++++.++.+-...|+.++.++
T Consensus 121 t~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~ 174 (215)
T TIGR03716 121 SGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLET 174 (215)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999888888888887653 5677788888888888888753
No 24
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=93.31 E-value=2.8 Score=34.02 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=73.7
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhc
Q 030301 4 LSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRR 83 (179)
Q Consensus 4 lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (179)
+..++|.++-+ -.+.++..|++.++.|.+|+++.. + +++. + + +..+
T Consensus 49 if~~~G~~ll~---~~~~~iaGGllLl~ia~~ml~~~~---~-~~~~---~---~---------------------~~~~ 94 (176)
T TIGR03717 49 LLTAVAVYLLA---IPFLKLIGGLLLLWIGWKLLLEEE---E-EQGG---D---V---------------------KGST 94 (176)
T ss_pred HHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhccc---c-cccc---c---c---------------------cccC
Confidence 44566777645 477899999999999999987641 1 1110 0 0 0001
Q ss_pred hhhhhhhhHHHHHHHHHHHhcccCcHHH-----HHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 030301 84 PFLLQFFSPIFLKAFSITFFGEWGDKSQ-----LATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVA 158 (179)
Q Consensus 84 ~~~~~~~~~~~~~af~~~flaE~GDKTQ-----l~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~ 158 (179)
.++.+... -|+=|-.+ ++.++. ++.+.+.++.|..++..++-..+-++.+++.++ .+++
T Consensus 95 ---------~~~~~v~~---I~~~D~~fS~DsV~a~~~~-~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~---p~l~ 158 (176)
T TIGR03717 95 ---------TLWAAIKT---IVIADAVMSLDNVLAVAGA-AHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF---PWII 158 (176)
T ss_pred ---------cHHHHHHH---HHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 12222221 23333332 222222 335778888898888888877777777777653 5677
Q ss_pred HHHHHHHHHHHHHHhcc
Q 030301 159 LSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 159 ~~~g~lFl~fg~~~l~~ 175 (179)
+.++..-...|+.++++
T Consensus 159 ~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 159 YIGAALLGYVAGEMIVT 175 (176)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777777888887753
No 25
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=92.38 E-value=0.28 Score=40.67 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=32.1
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 030301 3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
+++.+++.+...++|++++--+.++.=++-|+|-++.+
T Consensus 51 ilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~ 88 (205)
T COG4300 51 ILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILG 88 (205)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence 45666777777899999999889999999999998865
No 26
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=92.02 E-value=4.6 Score=33.19 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 030301 154 EKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 154 ~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
.+++++..|.+|+.+|++++++.
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999988754
No 27
>PRK11469 hypothetical protein; Provisional
Probab=91.98 E-value=0.3 Score=40.07 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 135 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 135 ~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
.+++.++-..|+.+.+++|+ +-|++++.+.+..|.++++++.
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999777 6699999999999999999874
No 28
>PRK10229 threonine efflux system; Provisional
Probab=91.77 E-value=5.9 Score=31.98 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 030301 155 KIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 155 ~~i~~~~g~lFl~fg~~~l~~ 175 (179)
+++++++|++++.+|++.+++
T Consensus 185 ~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 185 KWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 578899999999999998765
No 29
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=91.02 E-value=10 Score=33.19 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=50.2
Q ss_pred HHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhc--cHHHHH---HHHHHHHHHHHHHHhc
Q 030301 100 ITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQI--SEKIVA---LSGGVLFIVFGIQSFL 174 (179)
Q Consensus 100 ~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l--~~~~i~---~~~g~lFl~fg~~~l~ 174 (179)
+.|..-+|+-+.=....++. -+|..+.+.+...+++...+...++. ..++++ ++++.+=+++|+++.|
T Consensus 199 LL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~ 271 (279)
T PRK10019 199 LLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV 271 (279)
T ss_pred HHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666655555555443 25888888888888766666666666 455666 9999999999999988
Q ss_pred ccc
Q 030301 175 SPV 177 (179)
Q Consensus 175 ~~~ 177 (179)
+.+
T Consensus 272 ~~~ 274 (279)
T PRK10019 272 HGF 274 (279)
T ss_pred HHH
Confidence 764
No 30
>PRK10958 leucine export protein LeuE; Provisional
Probab=90.61 E-value=8.4 Score=31.58 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 030301 155 KIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 155 ~~i~~~~g~lFl~fg~~~l~~ 175 (179)
++++++.|++|+.+|++++.+
T Consensus 190 ~~i~~~~g~~l~~~~i~l~~~ 210 (212)
T PRK10958 190 AGGNSLVGLLFVGFAAKLATA 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999988654
No 31
>PRK11111 hypothetical protein; Provisional
Probab=90.35 E-value=8.8 Score=32.10 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=31.0
Q ss_pred hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhh
Q 030301 3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
++..++|+++-+++ +..-.++..+++.+..|+.|++..
T Consensus 58 l~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 58 LISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678888887654 666789999999999999999754
No 32
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=89.89 E-value=5.3 Score=33.00 Aligned_cols=138 Identities=17% Similarity=0.059 Sum_probs=73.6
Q ss_pred hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhh
Q 030301 3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKK 80 (179)
Q Consensus 3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
++..++|.++-+++ +-.-.++..+++.+..|++|++...+.++.++|.++.+ +.++ .
T Consensus 55 l~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~------~~~~---------------i 113 (201)
T TIGR00427 55 LIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGEGEDKQHKDEKEESA------EIDS---------------I 113 (201)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCCccccccccccccc------cccC---------------e
Confidence 35567788776544 66678999999999999999976422111111100000 0000 0
Q ss_pred hhchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCC---cEeehHHHHHHHHHHHHHHHHHHHHhhhcc---H
Q 030301 81 QRRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENP---FGVVLGGIIGQALCTTAAVIGGKSLASQIS---E 154 (179)
Q Consensus 81 ~~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~---~~V~~G~~~a~~l~t~lav~~G~~l~~~l~---~ 154 (179)
..-+ +.. --=-|.-|=-+.+.++.+++. ....+.+.....+.+.+.-..++++.+++. .
T Consensus 114 aivP---------La~------PllaGPGaIttvi~l~~~~~~~~~~~~~~~ai~~~~~~~~~~l~~s~~l~~~LG~~g~ 178 (201)
T TIGR00427 114 AVVP---------LAL------PLIAGPGAITTTMVLGARASSIGYKFLVVLAIALVALITWLLFRYSAFIIRRLGRTGI 178 (201)
T ss_pred eeee---------ccc------ccccCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0000 000 000122222233333333221 112333444455566666666777777764 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 030301 155 KIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 155 ~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+.+.++.|++-..+|+.++.++
T Consensus 179 ~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 179 NVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 6778999999999999887765
No 33
>PRK09304 arginine exporter protein; Provisional
Probab=89.49 E-value=10 Score=30.86 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 030301 154 EKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 154 ~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
.++++++.|++++.+|++.+.++.
T Consensus 180 ~~~in~~~g~~l~~~~~~l~~~~~ 203 (207)
T PRK09304 180 QRIINLFVGCVMWFIALQLARQGI 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 368889999999999999987754
No 34
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=87.07 E-value=1.9 Score=29.06 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 030301 132 IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFG 169 (179)
Q Consensus 132 ~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg 169 (179)
.-..+++.++...|+.+.+++ .++.+++++++++++|
T Consensus 31 ~~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 31 IFQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 345678888999999998855 5779999999998875
No 35
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=86.89 E-value=15 Score=29.66 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 030301 154 EKIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 154 ~~~i~~~~g~lFl~fg~~~l~~ 175 (179)
.++++++.|.+|+.+|++++.+
T Consensus 182 ~~~i~~~~g~~li~~~~~l~~~ 203 (205)
T PRK10520 182 MKALNKIFGSLFMLVGALLASA 203 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999988764
No 36
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=86.83 E-value=20 Score=31.22 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcccCcHHHHHHHHHhcccC--CcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Q 030301 91 SPIFLKAFSITFFGEWGDKSQLATIGLAADEN--PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVF 168 (179)
Q Consensus 91 ~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~--~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~f 168 (179)
+..+..+|+ +.+=| |=-|=+.-.++.+..+ ...+..|+..|.++..+++.++-+.. .++|.+..-...+++-++.
T Consensus 133 ~~l~~~afl-~vlRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~-~~i~~~~~f~~~~~~ll~~ 209 (306)
T PF03239_consen 133 WALFLLAFL-IVLRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGL-IRISLRSFFIITGVLLLLI 209 (306)
T ss_pred hHHHHHHHH-HHHHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHHH
Confidence 356677774 33344 5556566666665533 67888999999999888888886654 5689888877777765555
Q ss_pred HHHHhc
Q 030301 169 GIQSFL 174 (179)
Q Consensus 169 g~~~l~ 174 (179)
+..+++
T Consensus 210 aa~L~~ 215 (306)
T PF03239_consen 210 AAGLLG 215 (306)
T ss_pred HHHHHH
Confidence 554443
No 37
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=84.75 E-value=37 Score=32.29 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=22.5
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 030301 5 SAVVGWVAPNLISRKLTHHITTVLFFGFGLWSL 37 (179)
Q Consensus 5 sv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L 37 (179)
+..+|..+...+-..+..+..+++|++||+.|+
T Consensus 230 a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 230 VAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 334454443334445777888999999999886
No 38
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=82.81 E-value=9.6 Score=31.50 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=48.0
Q ss_pred cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 121 ~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
.+++.+.+|-.+|..+--..+..++..+. .+|+.|+--.-|++=+.+|++.+++..
T Consensus 23 ~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 23 FRRRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35789999999999888888888777764 899999988899999999999887654
No 39
>PRK10739 putative antibiotic transporter; Provisional
Probab=82.45 E-value=14 Score=30.52 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=30.0
Q ss_pred hHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhh
Q 030301 3 ILSAVVGWVAPNLI--SRKLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 3 ~lsv~~G~~l~~~l--p~~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
++..++|+.+-+++ +..-.++..+++.+..|+.|+++.
T Consensus 52 l~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 52 LVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35567788776644 677789999999999999999764
No 40
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=81.06 E-value=13 Score=31.00 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=82.2
Q ss_pred HHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhh
Q 030301 4 LSAVVGWVAPNL--ISRKLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQ 81 (179)
Q Consensus 4 lsv~~G~~l~~~--lp~~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (179)
+...+|..+-++ ++..-.++..+++-+..|++|+.+..+.++.+. ||.+ ++ +- .
T Consensus 56 ~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~~~~~~~~~--e~~~---~~----~i--------------a- 111 (203)
T COG2095 56 VFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGPTSRPKKKR--EEGQ---ED----SI--------------A- 111 (203)
T ss_pred HHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCCcCcCCCCc--ccCc---cC----Ce--------------e-
Confidence 456677777653 477788999999999999999997653221110 0000 00 00 0
Q ss_pred hchhhhhhhhHHHHHHHHHHHhcccCcHHHHHHHHHhcccC-CcEeehHHHHHHHHHHHHHHHHHHHHhhhc---cHHHH
Q 030301 82 RRPFLLQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADEN-PFGVVLGGIIGQALCTTAAVIGGKSLASQI---SEKIV 157 (179)
Q Consensus 82 ~~~~~~~~~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~-~~~V~~G~~~a~~l~t~lav~~G~~l~~~l---~~~~i 157 (179)
.- ++..- -=-|+-|-=+++.++.+++ ...+.+++.+...+.+.+.-.....+.+++ ..+.+
T Consensus 112 iv---------PLA~P------liaGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~ 176 (203)
T COG2095 112 IV---------PLAIP------LIAGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNAL 176 (203)
T ss_pred ee---------cccCc------cccCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 1125555556666776654 345556666666666677777777776665 46688
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 030301 158 ALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 158 ~~~~g~lFl~fg~~~l~~~ 176 (179)
.++-|++-..+|+.+..++
T Consensus 177 ~RimGllL~al~vq~i~~G 195 (203)
T COG2095 177 TRIMGLLLAALGVQMILDG 195 (203)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999877654
No 41
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=80.72 E-value=28 Score=28.03 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 138 TTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 138 t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
...+....+.+.+ ..++++++.|.+|+.+|+++.|
T Consensus 161 ~~~~~~~~~~~~~--~~~~i~~~~g~~l~~~a~~l~~ 195 (195)
T PRK10323 161 ALAGHLFQRLFRQ--YGRQLNIVLALLLVYCAVRIFY 195 (195)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 3333344444432 4578999999999999998765
No 42
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=80.18 E-value=2.4 Score=28.51 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.4
Q ss_pred ChhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 030301 1 MTILSAVVGWVAPNLISRKLTHHITTVLFFGFG 33 (179)
Q Consensus 1 MT~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG 33 (179)
|+.++..+|+.+.+ ...++.+|++++++++.|
T Consensus 36 ~~~~G~~~G~~~~~-~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 36 MPLLGLLLGRRLGR-FIGSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHC
Confidence 56788888888887 455779999999987765
No 43
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=79.71 E-value=8.7 Score=31.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=46.2
Q ss_pred ccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 120 DENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 120 ~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+++++.+.+|-.+|..+--..++.++..+ ..+|++|+.-.-|++=+.+|++.+++.
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~~~ 76 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAIKG 76 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHhcc
Confidence 57899999999999988777777755554 589999998888898899999887764
No 44
>COG1971 Predicted membrane protein [Function unknown]
Probab=78.07 E-value=4.5 Score=33.58 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccccC
Q 030301 135 ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPVK 178 (179)
Q Consensus 135 ~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~~ 178 (179)
+++-.++-..|+.+++ .+..+-||+++++....|+++++++.+
T Consensus 48 ~i~pliG~~~g~~~s~-~i~~~~~wigf~lL~~lG~~mI~e~f~ 90 (190)
T COG1971 48 AIMPLIGWFIGKFLST-FIAEWAHWIGFVLLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555543 236788999999999999999998754
No 45
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=74.68 E-value=58 Score=28.44 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=34.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
..|..+|.++...++.++=+. ..|+|.+..-.+.+++-++++.-++-
T Consensus 154 ~gg~~~Gl~~~~~~g~li~~~-~~~i~l~~FF~~t~~lL~llAagl~~ 200 (283)
T TIGR00145 154 IGPAVAGLIVAVVVGVLLYRG-GSRLSLKIFFILSSSLLLFIAAGLLG 200 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 335778877776666665544 57899999988888887777766553
No 46
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=68.10 E-value=62 Score=26.01 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=23.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~ 171 (179)
.+|+...+.+...++- ++.++...++. ++++++++++|+|
T Consensus 160 gLGT~p~ll~~~~~~~----~l~~~~~~~~~-r~~g~~~i~~G~~ 199 (199)
T PF13386_consen 160 GLGTLPALLLAGLLAG----KLSRRLRRRLL-RLAGVLLIILGIY 199 (199)
T ss_pred HHhHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHC
Confidence 3455555555444433 34444454554 5889999999975
No 47
>COG0730 Predicted permeases [General function prediction only]
Probab=67.41 E-value=28 Score=28.97 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=46.0
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 122 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 122 ~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+.-.+-.-...-+.....++..+|.++..++|++..+..-+++.+..++++++..
T Consensus 67 k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 121 (258)
T COG0730 67 KRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP 121 (258)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344666677777788899999999999999999999999999999999988763
No 48
>PRK10621 hypothetical protein; Provisional
Probab=65.85 E-value=19 Score=30.45 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=41.1
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 126 VVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 126 V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
+=.-...-+.+.+.+++..|.++.+++|++.++.+-+++.+..++++++
T Consensus 75 v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~ 123 (266)
T PRK10621 75 VNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLL 123 (266)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677888999999999999999999999999888888887764
No 49
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=62.91 E-value=27 Score=27.49 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=45.9
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHhcccc
Q 030301 122 NPFGVVLGGIIGQALCTTAAVIGGKSLASQIS--EKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 122 ~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~--~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
+-..+.+|...+-.+...+++++-..+.+..| ..++++++++..+.+|..++++.+
T Consensus 25 ~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~ 82 (191)
T PF01810_consen 25 AGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF 82 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35678899999999999999888888755443 467899999999999999987654
No 50
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=62.62 E-value=1e+02 Score=26.57 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=48.4
Q ss_pred HHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 110 SQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 110 TQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
|=++.++++ .+|+.++.|.+.|...+=..+=.+.+++.++ .++.+.+..+-+..|+.++.++
T Consensus 151 SV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 151 SVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred HHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555 6788899999999999998888888888653 5677777777778888887765
No 51
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=62.51 E-value=17 Score=29.54 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcc
Q 030301 131 IIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 131 ~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~ 175 (179)
..-+.+...+++..|.++..++|+++++..-++.-+.++.++++.
T Consensus 66 ~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~ 110 (240)
T PF01925_consen 66 VLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLK 110 (240)
T ss_pred hhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777888999999999999999999999999999988764
No 52
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=61.49 E-value=1.2e+02 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 030301 19 KLTHHITTVLFFGFGLWSLWDAFS 42 (179)
Q Consensus 19 ~~~~~~aa~lF~~FG~~~L~~~~~ 42 (179)
...+.+.++..+++|+++++++.+
T Consensus 3 ~~~~llgGlgl~l~Gl~~~~~~l~ 26 (307)
T TIGR00704 3 TLLHLLSAVAFLLWGMHIVRTGVM 26 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999875
No 53
>PRK00259 intracellular septation protein A; Reviewed
Probab=60.80 E-value=27 Score=28.44 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=37.7
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
+..++.+.+.++.+++....+..+++|.. ++++.++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHH
Confidence 55677788889999999999988877765 88888888889888774
No 54
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=60.02 E-value=47 Score=27.25 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 030301 16 ISRKLTHHITTVLFFGFGL 34 (179)
Q Consensus 16 lp~~~~~~~aa~lF~~FG~ 34 (179)
..-++.-++.+++.++..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 148 FGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp CHHCCHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhh
Confidence 3445566666666666655
No 55
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=58.66 E-value=1.1e+02 Score=27.12 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 030301 14 NLISRKLTHHITTVLFFGFGLWSLWDAFS 42 (179)
Q Consensus 14 ~~lp~~~~~~~aa~lF~~FG~~~L~~~~~ 42 (179)
.-....|+..++.++-+.+|+|+++...+
T Consensus 126 ~~~s~~~lE~~S~~Ll~~~G~w~~~r~lr 154 (303)
T COG2215 126 FALSEPWLELISFLLLILLGLWLLWRTLR 154 (303)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999997643
No 56
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=58.04 E-value=1.1e+02 Score=25.56 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=54.2
Q ss_pred HhcccCcHHHHHHHHHhcc---cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 102 FFGEWGDKSQLATIGLAAD---ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 102 flaE~GDKTQl~t~~Laa~---~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
|.|-==|--=+..+.+|.+ .+.+.+++|-.+|.+.--+.+.. +.+..+.+|++++--.-|.+=+..|++.++.+.
T Consensus 12 y~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d 89 (205)
T COG4300 12 YIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILGD 89 (205)
T ss_pred HHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhccc
Confidence 4444445555555666643 46789999999887766554444 344668899999999999999999999887654
No 57
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=55.34 E-value=71 Score=28.18 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=31.5
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHHHHHHHHHH
Q 030301 123 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKI--VALSGGVLFIVF 168 (179)
Q Consensus 123 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~--i~~~~g~lFl~f 168 (179)
..++.+|+-+|-.+...++.+.++.-++|+.--. .+.++.++|+.+
T Consensus 208 a~~lvlGaNiGT~~ta~las~g~~~~arr~Alahllfn~~g~ll~lp~ 255 (307)
T TIGR00704 208 ALCLVLGSNLGSGILAMLAASAANAAARRVALGHVLFNVVGSLIILPF 255 (307)
T ss_pred HHHHHHhcchhHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887777666664443 355555655543
No 58
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=54.23 E-value=40 Score=26.42 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=42.5
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHhcc
Q 030301 122 NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 122 ~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~--~~i~~~~g~lFl~fg~~~l~~ 175 (179)
+.+.+.+|..+|..+...++++.-..+-+..|. ..++++++...+.+|..++.+
T Consensus 20 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 20 AGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456788899999999988888877766666674 677888888778899887763
No 59
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=53.96 E-value=39 Score=32.17 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=35.6
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHh
Q 030301 126 VVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 126 V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l 173 (179)
-.+|.++.+.+...++..+|..+...+...++.+..+++|+++|+.++
T Consensus 215 y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 215 YVQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666777777776555556888899999999999875
No 60
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=53.94 E-value=1.7e+02 Score=28.05 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCChhhHHHHHHhhhhhhhhccccccCCCCCchHhhhhhchhhhhhhhHHHHHHH
Q 030301 19 KLTHHITTVLFFGFGLWSLWDAFSDGGEAEEFEEVEKKLDADFKANAGATKEGSKADDELKKQRRPFLLQFFSPIFLKAF 98 (179)
Q Consensus 19 ~~~~~~aa~lF~~FG~~~L~~~~~~~~~~ee~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 98 (179)
.+.+.+.++..+.||.++++++.+.... |. .++.+. +..++ ....++..+
T Consensus 6 ~~l~l~g~v~l~L~g~~~m~~Gv~~~~G-~~---lr~~L~---------------------~~t~n-----p~~gvl~Gi 55 (533)
T COG1283 6 VLLNLLGAVALLLFGIKMVGDGVQRAAG-DR---LRKILA---------------------RFTSN-----PILGVLAGI 55 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HH---HHHHHH---------------------HhcCC-----cHHHHHHHH
Confidence 5788999999999999999999642111 11 111111 01111 023466666
Q ss_pred HHHHhcccCcHHHHHHHHHhcc-c----CCcEeehHHHHHHHHHHHHHHH
Q 030301 99 SITFFGEWGDKSQLATIGLAAD-E----NPFGVVLGGIIGQALCTTAAVI 143 (179)
Q Consensus 99 ~~~flaE~GDKTQl~t~~Laa~-~----~~~~V~~G~~~a~~l~t~lav~ 143 (179)
+++-+----+-|-+.|+.+.++ + ...+|.+|+-.|-.+.+-+-.+
T Consensus 56 ~~T~llQSStatt~lt~gfV~aGl~sl~~Ai~vilGANIGTt~Ta~iva~ 105 (533)
T COG1283 56 VATALLQSSTATTVLTIGFVAAGLLSLKQAIGVILGANIGTTVTAWIVAL 105 (533)
T ss_pred HHHHHHHhcchHHHHHHHHHhccccchhhhhhheeccchhHHHHHHHHHH
Confidence 6677777778888899999876 2 3578999998888776655443
No 61
>PRK10995 inner membrane protein; Provisional
Probab=50.85 E-value=72 Score=26.46 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 140 AAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 140 lav~~G~~l~~~--l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+..++|+.+-+. ++....++.+|++.+.+|+.++++.
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556665554 4788999999999999999998754
No 62
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=50.36 E-value=33 Score=28.51 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=26.3
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Q 030301 6 AVVGWVAPNLISRKLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 6 v~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
.++|.....++|++|+--+.+.+=++.|+|-++++
T Consensus 42 Sl~~a~gl~~iP~~wIlGlLGliPI~lGi~~l~~~ 76 (193)
T TIGR00779 42 SLLLAFGVNLIPEKWVLGLLGLIPIYLGIKVAIKG 76 (193)
T ss_pred HHHHHHHHHhCCHHHHHhHHhHHHHHHHHHHHhcc
Confidence 34444444789999997777888889999988874
No 63
>COG1238 Predicted membrane protein [Function unknown]
Probab=48.59 E-value=1.4e+02 Score=24.04 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHH
Q 030301 91 SPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEK 155 (179)
Q Consensus 91 ~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~ 155 (179)
...|..+|+-..+-=.+.---++.+.++- ++++....=+++|..+-+...-++|+...+.+..+
T Consensus 20 ~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~ 83 (161)
T COG1238 20 AGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIARR 83 (161)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHH
Confidence 35677888777777778888888888888 89998888888888888888888888877666553
No 64
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=47.13 E-value=41 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 030301 154 EKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 154 ~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
..++..+++++-+.+|+|++|...
T Consensus 87 ~~~le~~S~~lii~lGl~ll~r~~ 110 (279)
T PRK10019 87 EPWLQLISAVIIISTAFWMFWRTW 110 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999998643
No 65
>TIGR00948 2a75 L-lysine exporter.
Probab=46.72 E-value=1.4e+02 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 030301 20 LTHHITTVLFFGFGLWSLWDAF 41 (179)
Q Consensus 20 ~~~~~aa~lF~~FG~~~L~~~~ 41 (179)
+++++.++-.++.|.+++|+..
T Consensus 57 ~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 57 VLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677777777889999999764
No 66
>PF14007 YtpI: YtpI-like protein
Probab=43.43 E-value=49 Score=24.14 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 030301 15 LISRKLTHHITTVLFFGFGLWSLWDAFS 42 (179)
Q Consensus 15 ~lp~~~~~~~aa~lF~~FG~~~L~~~~~ 42 (179)
++....+.++.++.|+++|+-.++.+++
T Consensus 52 ~~~~st~~~iV~~ifl~lG~~n~~~G~r 79 (89)
T PF14007_consen 52 FLFGSTVRLIVGAIFLVLGLFNLFAGIR 79 (89)
T ss_pred HHcccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578889999999999999999998864
No 67
>PRK10229 threonine efflux system; Provisional
Probab=41.93 E-value=1.8e+02 Score=23.23 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=52.0
Q ss_pred HhcccCcHHHHHHHHHhcccC---CcEeehHHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHhccc
Q 030301 102 FFGEWGDKSQLATIGLAADEN---PFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 102 flaE~GDKTQl~t~~Laa~~~---~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~--~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
...--|. ..+.++.-+.++. .....+|...|..+...++.++-..+.+..|. ..+++++++-.+.+|..++.+.
T Consensus 15 ~~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~~~ 93 (206)
T PRK10229 15 ALMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLRGA 93 (206)
T ss_pred HhcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344565 5666666666653 45677899999999988888888777777763 4667766666677888777654
No 68
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=41.03 E-value=79 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
+.=++.+++.++.+++.......+++| ..+++++++=++||..+++
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~~~~v~--~m~~is~~lv~vFGglTl~ 67 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVKYKKVE--KMQWISFVLIVVFGGLTLI 67 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHHHHHH
Confidence 444667788888889988888888665 5678888888889988775
No 69
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=38.37 E-value=1.2e+02 Score=24.59 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=33.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHh
Q 030301 126 VVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 126 V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l 173 (179)
...|..+.+.+.......+|+.+.+ ..+++..+.|++.+++|+.++
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~~--~~~~~~~i~g~~~i~~Gl~~l 92 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFGQ--ISPWLYIIAGVLLILFGLSLL 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667777777763 246888899999999998765
No 70
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=38.15 E-value=95 Score=27.62 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=47.2
Q ss_pred cccC-cHHHHHHHHHhcccC-CcEeehHHHHHH--------HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHh
Q 030301 104 GEWG-DKSQLATIGLAADEN-PFGVVLGGIIGQ--------ALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 104 aE~G-DKTQl~t~~Laa~~~-~~~V~~G~~~a~--------~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l 173 (179)
.|-| -|+-++|-..+.+-+ +.++.++-.+++ ++.-...|+-++.+.-..++.++.+++.++-+.+|+|++
T Consensus 70 lgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~ 149 (303)
T COG2215 70 LGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLL 149 (303)
T ss_pred cCCCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444 366666666665533 334444433322 222233455556666777899999999999999999999
Q ss_pred ccc
Q 030301 174 LSP 176 (179)
Q Consensus 174 ~~~ 176 (179)
|+.
T Consensus 150 ~r~ 152 (303)
T COG2215 150 WRT 152 (303)
T ss_pred HHH
Confidence 875
No 71
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=38.05 E-value=1e+02 Score=25.39 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=37.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcc
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~ 175 (179)
+-.++..++++|++++......-++++ .++++++++-++||..+++-
T Consensus 22 I~~AT~~livAt~i~l~~~w~~~rkv~--km~l~s~~~v~vFG~lTl~f 68 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIKYRKVE--KMQLISGVVVVVFGGLTLIF 68 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHhchhHhhc
Confidence 445667788899999999988888764 57888999999999988864
No 72
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=37.13 E-value=44 Score=26.99 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=39.1
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 123 PFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 123 ~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
......|...|.++.......+...+. ..+.++.+|++-+..|..++.+.
T Consensus 33 ~~~~~~G~~~A~vlr~if~~~G~~ll~----~~~~~iaGGllLl~ia~~ml~~~ 82 (176)
T TIGR03717 33 KKAIFWGTAGAIVLRILLTAVAVYLLA----IPFLKLIGGLLLLWIGWKLLLEE 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHhcc
Confidence 366788888888888777766665554 48889999999999999988643
No 73
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=36.73 E-value=60 Score=23.38 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.6
Q ss_pred HhhhccHHHHHHHHHHHHHHHHHHHhcc
Q 030301 148 LASQISEKIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 148 l~~~l~~~~i~~~~g~lFl~fg~~~l~~ 175 (179)
...++|++.-..+.-++|++|++..+|.
T Consensus 18 ~c~~Lsp~~R~~vvl~ml~~fa~l~ly~ 45 (85)
T PF13150_consen 18 YCGRLSPKQRLRVVLVMLVLFAALCLYM 45 (85)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999877763
No 74
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=36.04 E-value=1.7e+02 Score=23.95 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 140 AAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 140 lav~~G~~l~~~--l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
+..++|+.+-+. ++....++.+|++.+..|+.++....
T Consensus 53 ~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 53 IFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566665544 58899999999999999999987543
No 75
>TIGR00948 2a75 L-lysine exporter.
Probab=35.93 E-value=1.3e+02 Score=23.49 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=42.9
Q ss_pred HHHhccc-CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHhccc
Q 030301 115 IGLAADE-NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 115 ~~Laa~~-~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~--~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+.-+.++ +-....+|..+|..+...+++++-..+-+..|. ..+++++++-.+.+|..++++.
T Consensus 13 i~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 13 LRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 345677888888888888888877777665554 3567777777777998887654
No 76
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=35.84 E-value=1e+02 Score=24.95 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=35.2
Q ss_pred cEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Q 030301 124 FGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQ 171 (179)
Q Consensus 124 ~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~ 171 (179)
+.-+.|..++..+....+...|+.+.++.+.+ ..+..|......|++
T Consensus 133 ~~y~~G~~~at~~l~~~g~~~~~~~~~~~~~~-~~r~~G~~ia~~G~~ 179 (180)
T PF04955_consen 133 LLYAAGFVLATALLHAAGLALGRLLRRRWAAR-AVRAAGGAIAAAGLM 179 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHh
Confidence 34567777888888888888888887766666 777777787787765
No 77
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=35.22 E-value=62 Score=26.97 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhhh
Q 030301 27 VLFFGFGLWSLWDAF 41 (179)
Q Consensus 27 ~lF~~FG~~~L~~~~ 41 (179)
+.|+..|+..|--++
T Consensus 140 i~~~LvGVLvLQaG~ 154 (196)
T PF08229_consen 140 IALVLVGVLVLQAGQ 154 (196)
T ss_pred HHHHHHHHHHHHhhH
Confidence 567788888888553
No 78
>PF14007 YtpI: YtpI-like protein
Probab=35.18 E-value=80 Score=23.03 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccc
Q 030301 153 SEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 153 ~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
.+.+++++.|++|+++|+..++.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G 77 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAG 77 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHH
Confidence 678889999999999999877654
No 79
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.74 E-value=84 Score=23.41 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHH
Q 030301 133 GQALCTTAAVIGGKSLASQISEKI 156 (179)
Q Consensus 133 a~~l~t~lav~~G~~l~~~l~~~~ 156 (179)
.+++.+.+++++|.++-++.|-+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCc
Confidence 456778889999999998887544
No 80
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=33.67 E-value=2.5e+02 Score=22.57 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 030301 154 EKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 154 ~~~i~~~~g~lFl~fg~~~l~ 174 (179)
.+++++++|++.+.+|++.++
T Consensus 191 ~~~i~~~~G~lli~~g~~~l~ 211 (211)
T PF02683_consen 191 SRWIKRISGILLIALGLYLLT 211 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHC
Confidence 568899999999999999863
No 81
>PF13347 MFS_2: MFS/sugar transport protein
Probab=33.18 E-value=2.4e+02 Score=24.66 Aligned_cols=40 Identities=13% Similarity=-0.088 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 030301 133 GQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS 172 (179)
Q Consensus 133 a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~ 172 (179)
...+.+.++..+...+.+|+..+..-..+.+++....++.
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~ 307 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL 307 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH
Confidence 4456666777777888888888877777777766655543
No 82
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=32.33 E-value=1.9e+02 Score=20.68 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=22.9
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHh
Q 030301 142 VIGGKSLASQISEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 142 v~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l 173 (179)
.++|... .-.|.-|++.++|.++++.|++.+
T Consensus 27 ~~F~~~~-~p~~~lwlqfl~G~~lf~~G~~Fi 57 (77)
T PF11118_consen 27 TVFGILF-SPFPSLWLQFLAGLLLFAIGVGFI 57 (77)
T ss_pred HHHHHhc-CCchhHHHHHHHHHHHHHHHHHHH
Confidence 3444444 345888999999999999998654
No 83
>COG3817 Predicted membrane protein [Function unknown]
Probab=31.86 E-value=73 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Q 030301 16 ISRKLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 16 lp~~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
+.-++++|++++.|+.+++.+.+|.
T Consensus 3 ~~l~~lY~l~Gi~f~~~a~~sf~dk 27 (313)
T COG3817 3 ISLELLYILIGIQFLHTAVLSFKDK 27 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccc
Confidence 4568999999999999998887764
No 84
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=31.04 E-value=3.5e+02 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHhcccCc
Q 030301 91 SPIFLKAFSITFFGEWGD 108 (179)
Q Consensus 91 ~~~~~~af~~~flaE~GD 108 (179)
.|.+.++.+..|+..|-|
T Consensus 197 ~P~laa~~I~~fi~~WN~ 214 (281)
T COG0395 197 KPGLAAVAIFTFIGAWNE 214 (281)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 366777777788877754
No 85
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=30.89 E-value=3.2e+02 Score=22.88 Aligned_cols=29 Identities=7% Similarity=-0.088 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 030301 137 CTTAAVIGGKSLASQISEKIVALSGGVLF 165 (179)
Q Consensus 137 ~t~lav~~G~~l~~~l~~~~i~~~~g~lF 165 (179)
...++.+.+.++.+|+..+.+...+.++.
T Consensus 242 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~ 270 (377)
T PRK11102 242 FLFVMTIINSRFVRRVGALNMLRFGLWIQ 270 (377)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34444455555667777776655554443
No 86
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=30.83 E-value=2.9e+02 Score=22.36 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhh
Q 030301 17 SRKLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 17 p~~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
...+++++.+++++.+|++..+..
T Consensus 67 ~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 67 VVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345789999999999999998865
No 87
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=29.74 E-value=4.8e+02 Score=24.56 Aligned_cols=41 Identities=12% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHH
Q 030301 130 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 170 (179)
Q Consensus 130 ~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~ 170 (179)
+..+....+.+..+.|-++-+|++.|.+.+.+..+-.++-+
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~ 350 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALL 350 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 44556666667777777777777777777777665544443
No 88
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=29.72 E-value=1.6e+02 Score=23.97 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=38.9
Q ss_pred CCcEeehHHHHHHHHHHHHHHHH-HHHHhhh-ccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 122 NPFGVVLGGIIGQALCTTAAVIG-GKSLASQ-ISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 122 ~~~~V~~G~~~a~~l~t~lav~~-G~~l~~~-l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+-+.+.+|..+|..+...++++. +..+.+. .=-..++++++.-.+.+|+.+++..
T Consensus 38 ~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~ra~ 94 (208)
T COG1280 38 AGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALRAG 94 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778899999998888888775 3333221 1235678888888888888888754
No 89
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.35 E-value=95 Score=21.43 Aligned_cols=31 Identities=26% Similarity=0.608 Sum_probs=23.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 030301 11 VAPNLISRKLTHHITTVLFFGFGLWSLWDAFS 42 (179)
Q Consensus 11 ~l~~~lp~~~~~~~aa~lF~~FG~~~L~~~~~ 42 (179)
+-|+.+....+-.+.+++| ..+.|.+++.|+
T Consensus 14 ~~p~~l~~l~lG~~~~vll-LW~aWal~~ayr 44 (65)
T TIGR03758 14 IDPQAMNTLILGLVLAVLF-LWGAWALLTAYR 44 (65)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3355566666777777887 788999999985
No 90
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=29.35 E-value=2e+02 Score=23.38 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHHHHhh------hccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 123 PFGVVLGGIIGQALCTTAAVIGGKSLAS------QISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 123 ~~~V~~G~~~a~~l~t~lav~~G~~l~~------~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
-+..++|..++..........+.+.+.. .-...+++++.|++++.+|++.....
T Consensus 31 ~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 31 LLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455667777777777777777777763 33456889999999999999887654
No 91
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=28.89 E-value=2e+02 Score=23.02 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHHHHHHhccc---CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHhccc
Q 030301 110 SQLATIGLAADE---NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 110 TQl~t~~Laa~~---~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~--~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+.+..+.-+.++ +.+...+|...|..+...++..+...+.+..|. ..++++++.-.+.+|..++.+.
T Consensus 23 ~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 23 NNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445443 456788999999999877777555455544443 3456665555566898887653
No 92
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=27.30 E-value=1.6e+02 Score=18.34 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=25.5
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 030301 3 ILSAVVGWVAPNLISRKLTHHITTVLFFGFGLWSLW 38 (179)
Q Consensus 3 ~lsv~~G~~l~~~lp~~~~~~~aa~lF~~FG~~~L~ 38 (179)
++|...|-.+ ++-+++..|+.++-.++.|+.-|.
T Consensus 2 i~aliaGiLi--Li~PrllnyiVaiyLI~~G~lgL~ 35 (39)
T PF11295_consen 2 ILALIAGILI--LIMPRLLNYIVAIYLIVIGLLGLF 35 (39)
T ss_pred HHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566777665 455678889999999999987665
No 93
>PRK00944 hypothetical protein; Provisional
Probab=27.05 E-value=2.4e+02 Score=23.56 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
..|.....-..+.++..+|-++++|+|. +++..-++.|=++..+..++.
T Consensus 125 Y~GDSVlNSv~D~~~M~~GF~~A~rlPv-~vtv~lai~fEl~~~~~IRDn 173 (195)
T PRK00944 125 YYGDSILNSVMDTLAMVLGFLFAARLPV-WLTVAIAIFFEIFTGWLIRDN 173 (195)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhccc
Confidence 4588888999999999999999999986 456667777777777766653
No 94
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=26.97 E-value=2.6e+02 Score=22.64 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=40.6
Q ss_pred cCCcEeehHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 121 ENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 121 ~~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+++...+.|...|+++-...-..+...+.. . .+++.++|+.-+..|...+.+.
T Consensus 29 ~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~-~--~~i~~igG~~Ll~~a~k~~~~~ 81 (183)
T PF03741_consen 29 QRRKALFWGIIGAIVLRIIFIFLASWLLSI-F--PWILLIGGLFLLYIAIKLLHEE 81 (183)
T ss_pred HhhhhHHHhHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999998777776666555543 2 7889999988888888887664
No 95
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=26.64 E-value=3.5e+02 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=13.4
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 030301 9 GWVAPNLISRKLTHHITTVLFFGFGLW 35 (179)
Q Consensus 9 G~~l~~~lp~~~~~~~aa~lF~~FG~~ 35 (179)
|.++.+..+-++.-++.++.++...+.
T Consensus 148 ~~~l~~~~g~~~~~~~~~~~~~~~~~~ 174 (365)
T TIGR00900 148 GGLMYATLGIKWAIWVDAVGFAISALL 174 (365)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333333444555556666655554443
No 96
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=26.16 E-value=5.1e+02 Score=23.72 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=21.3
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHHHH--HHHHHhhh
Q 030301 2 TILSAVVGWVAPNLISRKLTHHITTVLFFG--FGLWSLWD 39 (179)
Q Consensus 2 T~lsv~~G~~l~~~lp~~~~~~~aa~lF~~--FG~~~L~~ 39 (179)
|++.+=+|.++.+++-=|.+-++.+++=++ ..+|.+.+
T Consensus 150 ~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 150 TVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355666777777777666665555544333 33343434
No 97
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=25.71 E-value=2.4e+02 Score=22.48 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHhcccCcHHHHHHHHHhccc---CCcEeehHHHHHHHHHHHHHHHHHHHHhhhccH--HHHHHHHHHHHHHHHHHHhcc
Q 030301 101 TFFGEWGDKSQLATIGLAADE---NPFGVVLGGIIGQALCTTAAVIGGKSLASQISE--KIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 101 ~flaE~GDKTQl~t~~Laa~~---~~~~V~~G~~~a~~l~t~lav~~G~~l~~~l~~--~~i~~~~g~lFl~fg~~~l~~ 175 (179)
+...--|. ..+..+.-+.++ +-+...+|...|..+...++.++-..+-+..|. ..++++++.-.+.+|..++++
T Consensus 15 ~~~~sPGP-~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s 93 (205)
T PRK10520 15 ILSLSPGS-GAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRA 93 (205)
T ss_pred HHhcCCch-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444 334444445443 456778899999999988888877766655554 356777777777899988865
Q ss_pred c
Q 030301 176 P 176 (179)
Q Consensus 176 ~ 176 (179)
.
T Consensus 94 ~ 94 (205)
T PRK10520 94 A 94 (205)
T ss_pred C
Confidence 3
No 98
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=25.42 E-value=1.1e+02 Score=27.18 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 030301 19 KLTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 19 ~~~~~~aa~lF~~FG~~~L~~~ 40 (179)
++..++.++.|++++++.++|.
T Consensus 2 e~~Y~l~Gl~~~~~a~~~~~Dk 23 (308)
T PF06166_consen 2 EIFYILIGLVFIITAVRSLRDK 23 (308)
T ss_pred ccHHHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999999985
No 99
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=24.45 E-value=3.9e+02 Score=23.90 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHhcccCcHHHHHHHHHhcccCCcEeehHHHHHHHHHHHHHHHHHHHHhh
Q 030301 90 FSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLAS 150 (179)
Q Consensus 90 ~~~~~~~af~~~flaE~GDKTQl~t~~Laa~~~~~~V~~G~~~a~~l~t~lav~~G~~l~~ 150 (179)
|.|++....+.+..+-+-.+. .| .+|- -|+..++.+.+.++.+..-.+.+
T Consensus 94 FiPal~i~v~a~~~a~~~~~l-----~l---~d~~---~~tlv~lgig~i~Ali~a~~itk 143 (308)
T PF06166_consen 94 FIPALLIPVVAVIGAQLFTKL-----PL---LDPK---NGTLVGLGIGAIVALIVALIITK 143 (308)
T ss_pred hHHHHHHHHHHHHHHHHhccc-----cc---cCCC---cchHHHHHHHHHHHHHHHHHHhC
Confidence 456666666655555432222 00 1111 16666777777777777666643
No 100
>TIGR00901 2A0125 AmpG-related permease.
Probab=24.31 E-value=4.2e+02 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHH
Q 030301 138 TTAAVIGGKSLASQISEKIVALSGGV 163 (179)
Q Consensus 138 t~lav~~G~~l~~~l~~~~i~~~~g~ 163 (179)
..++.+++.++.+|++.+..-..+.+
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~~~~~ 283 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALLLFGI 283 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34555556666677776555444333
No 101
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=24.23 E-value=2.1e+02 Score=18.54 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhcccc
Q 030301 130 GIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 177 (179)
Q Consensus 130 ~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~~~~ 177 (179)
..-..+..+.....+|-+-...-+-..--+..+.+|.+++..++-...
T Consensus 4 ~~~~~f~i~~~~~~iGl~~~~~~l~~KGy~~~~~l~~l~s~~tl~K~v 51 (53)
T PF05360_consen 4 QSWISFGISIVLMLIGLWNAPLDLSEKGYYAMGLLFLLFSAFTLQKTV 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 344555666677777877766555666678889999999998875543
No 102
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.18 E-value=4.1e+02 Score=22.23 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hhhccHHHHHHHHHHHHHHHHHHHh
Q 030301 130 GIIGQALCTTAAVIGGKSL-------ASQISEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 130 ~~~a~~l~t~lav~~G~~l-------~~~l~~~~i~~~~g~lFl~fg~~~l 173 (179)
..+...+++-+++++|.++ ....-..++.-+++..|+..++..+
T Consensus 235 ~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~~~el 285 (317)
T PF02535_consen 235 LLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVAFVEL 285 (317)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888889999999998 2333344556667777777777644
No 103
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=22.03 E-value=3.6e+02 Score=23.01 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhc---CC-CChhhHHHHHHhhh
Q 030301 16 ISRKLTHHITTVLFFGFGLWSLWDAFS---DG-GEAEEFEEVEKKLD 58 (179)
Q Consensus 16 lp~~~~~~~aa~lF~~FG~~~L~~~~~---~~-~~~ee~~E~~~~~~ 58 (179)
..+....++.+++.+.-|.+++++..+ +. .++|..+++.+.+.
T Consensus 177 ~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~ 223 (299)
T PRK09509 177 RADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVT 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 355566777777777889999998764 22 23444455555443
No 104
>PRK10739 putative antibiotic transporter; Provisional
Probab=21.95 E-value=4.4e+02 Score=21.62 Aligned_cols=37 Identities=16% Similarity=0.496 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHhccc
Q 030301 140 AAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLSP 176 (179)
Q Consensus 140 lav~~G~~l~~~--l~~~~i~~~~g~lFl~fg~~~l~~~ 176 (179)
+..++|+.+-+. ++....++.+|++-+.+|+.++...
T Consensus 53 ~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 53 VFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445666666554 4889999999999999999998654
No 105
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=21.88 E-value=4.9e+02 Score=21.98 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 030301 20 LTHHITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 20 ~~~~~aa~lF~~FG~~~L~~~ 40 (179)
+.|.+-++.-++.|+++.|+.
T Consensus 69 ~~h~imal~li~~Gi~ti~~W 89 (224)
T PF09930_consen 69 VIHLIMALLLIYAGIYTIKKW 89 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999987
No 106
>PF10063 DUF2301: Uncharacterized integral membrane protein (DUF2301); InterPro: IPR019275 This family contains uncharacterised integral membrane proteins.
Probab=21.50 E-value=1.6e+02 Score=23.14 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHHhhhhhhhhHHH-HHHHH--HHHHHHHHHHHhhhhh
Q 030301 6 AVVGWVAPNLISRKL-THHIT--TVLFFGFGLWSLWDAF 41 (179)
Q Consensus 6 v~~G~~l~~~lp~~~-~~~~a--a~lF~~FG~~~L~~~~ 41 (179)
.++|+++ .+.|... ...++ +++|++|+++=.+...
T Consensus 86 llLghl~-g~~~~~~~~~ll~~~~~L~~i~A~rK~~mPl 123 (135)
T PF10063_consen 86 LLLGHLF-GLLPASVELALLGIWALLFLIFAIRKWRMPL 123 (135)
T ss_pred HHHHHHH-CCCcHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4567776 4445444 34444 7999999988777544
No 107
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=21.33 E-value=1.3e+02 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 030301 19 KLTHHITTVLFFGFGLWSLWDAFS 42 (179)
Q Consensus 19 ~~~~~~aa~lF~~FG~~~L~~~~~ 42 (179)
+++-++.++-++.+|+|.+++++.
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~a~~ 70 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVKAVY 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999998864
No 108
>PRK03557 zinc transporter ZitB; Provisional
Probab=21.17 E-value=2.8e+02 Score=24.04 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc
Q 030301 17 SRKLTHHITTVLFFGFGLWSLWDAFS 42 (179)
Q Consensus 17 p~~~~~~~aa~lF~~FG~~~L~~~~~ 42 (179)
.+.+..++.+++.+.-|++++|+...
T Consensus 185 ~Dpi~~ilis~~i~~~~~~l~~~~~~ 210 (312)
T PRK03557 185 ADPILSILVSVLVLRSAWRLLKESVN 210 (312)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888889999998854
No 109
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=20.90 E-value=2.6e+02 Score=24.43 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=36.4
Q ss_pred CcEeehHHHHHHHHHHHHHHHHHHHHhh-------hccHHHHHHHHHHHHHHHHHHHh
Q 030301 123 PFGVVLGGIIGQALCTTAAVIGGKSLAS-------QISEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 123 ~~~V~~G~~~a~~l~t~lav~~G~~l~~-------~l~~~~i~~~~g~lFl~fg~~~l 173 (179)
..+|+.|..+|+++|-++++.+-..... .+=+..+..++.++-...++|+.
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~ 95 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWML 95 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998877776554322 22234567777888888888886
No 110
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=20.83 E-value=2.4e+02 Score=17.91 Aligned_cols=44 Identities=18% Similarity=0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHhc
Q 030301 131 IIGQALCTTAAVIGGKSLASQISE-KIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 131 ~~a~~l~t~lav~~G~~l~~~l~~-~~i~~~~g~lFl~fg~~~l~ 174 (179)
..-++.+..+...+|+++-++.+. .+...++.++=+.-|++.++
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~ 51 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNVY 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH
Confidence 345667777888899999888866 33333333333333444443
No 111
>PRK11111 hypothetical protein; Provisional
Probab=20.12 E-value=4.9e+02 Score=21.62 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHhcc
Q 030301 140 AAVIGGKSLASQ--ISEKIVALSGGVLFIVFGIQSFLS 175 (179)
Q Consensus 140 lav~~G~~l~~~--l~~~~i~~~~g~lFl~fg~~~l~~ 175 (179)
+..+.|+++-+. ++....++.+|++.+..|+.|+..
T Consensus 59 ~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 59 ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 456777776655 488899999999999999999853
No 112
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=20.03 E-value=2.9e+02 Score=23.97 Aligned_cols=69 Identities=10% Similarity=-0.045 Sum_probs=35.4
Q ss_pred HHHHhcccCcHHHHHHHHHhcc-cCCcEeehHHH-HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 030301 99 SITFFGEWGDKSQLATIGLAAD-ENPFGVVLGGI-IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIV 167 (179)
Q Consensus 99 ~~~flaE~GDKTQl~t~~Laa~-~~~~~V~~G~~-~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~ 167 (179)
...|++.+||..+...+..-.+ .+.-...+|.. .+..+...+....+-.+.+|.+.|.+-..+-++|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 3456677788766554433322 22111122222 233344444444444667788888777766666644
No 113
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=20.01 E-value=2.8e+02 Score=22.31 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhc
Q 030301 129 GGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFL 174 (179)
Q Consensus 129 G~~~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~l~ 174 (179)
-++.+.+.++.+.+.......+++ +..+++++++=++||..+++
T Consensus 24 ~At~~~i~~~~~~v~~~~~~~r~v--~~~~~is~~lv~vfG~lTl~ 67 (176)
T PF04279_consen 24 VATAVLIVATLAQVAYSWIRRRKV--PKMQWISLVLVLVFGGLTLL 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC--chhHHHHHHHHHHHHHHHHH
Confidence 345555666677777666666654 45677888888888877765
Done!