Query 030301
Match_columns 179
No_of_seqs 165 out of 1114
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 70.9 41 0.0014 27.3 11.8 31 135-165 305-335 (438)
2 1pw4_A Glycerol-3-phosphate tr 45.1 1.1E+02 0.0036 24.8 8.5 39 135-173 298-338 (451)
3 2lx0_A Membrane fusion protein 44.0 32 0.0011 19.2 3.4 18 21-38 10-27 (32)
4 4av3_A K(+)-stimulated pyropho 20.2 5.6E+02 0.019 24.3 10.4 24 135-158 93-116 (735)
5 2i68_A Protein EMRE; transmemb 14.7 1.3E+02 0.0046 22.0 3.3 16 24-39 88-103 (137)
6 1btq_A BAND 3 anion transport 14.1 82 0.0028 17.1 1.4 13 23-35 2-14 (26)
7 1bh9_B TAFII28; histone fold, 11.0 2.5E+02 0.0084 19.3 3.5 26 145-170 27-52 (89)
8 2jwa_A Receptor tyrosine-prote 10.9 2.1E+02 0.0073 17.3 2.7 28 122-149 9-36 (44)
9 4gc0_A D-xylose-proton symport 10.2 5.7E+02 0.02 20.7 6.2 33 140-172 70-102 (491)
10 2jo1_A Phospholemman; FXYD1, N 9.6 2E+02 0.0069 19.3 2.5 17 23-40 22-38 (72)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=70.90 E-value=41 Score=27.34 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 030301 135 ALCTTAAVIGGKSLASQISEKIVALSGGVLF 165 (179)
Q Consensus 135 ~l~t~lav~~G~~l~~~l~~~~i~~~~g~lF 165 (179)
.++..++.+++.++.+|+..+.+-..+.++.
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455566666777778888887766555444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=45.14 E-value=1.1e+02 Score=24.84 Aligned_cols=39 Identities=0% Similarity=-0.053 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHh
Q 030301 135 ALCTTAAVIGGKSLASQI--SEKIVALSGGVLFIVFGIQSF 173 (179)
Q Consensus 135 ~l~t~lav~~G~~l~~~l--~~~~i~~~~g~lFl~fg~~~l 173 (179)
.++..++.++...+.+|+ +.+....++.++....+...+
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 345555555556666777 666666666655554555443
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=43.97 E-value=32 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 030301 21 THHITTVLFFGFGLWSLW 38 (179)
Q Consensus 21 ~~~~aa~lF~~FG~~~L~ 38 (179)
.-+++-+.|+.||.|+..
T Consensus 10 aglvalltflafgfwlfk 27 (32)
T 2lx0_A 10 AGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566789999999875
No 4
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=20.21 E-value=5.6e+02 Score=24.29 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHH
Q 030301 135 ALCTTAAVIGGKSLASQISEKIVA 158 (179)
Q Consensus 135 ~l~t~lav~~G~~l~~~l~~~~i~ 158 (179)
.++|.++-++|-+++.|-+.|+-+
T Consensus 93 a~~S~~aGyiGM~vAt~ANvRTA~ 116 (735)
T 4av3_A 93 AVMSASAGIVGMKMATRANVRVAE 116 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888887766666543
No 5
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=14.73 E-value=1.3e+02 Score=22.03 Aligned_cols=16 Identities=13% Similarity=0.138 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhh
Q 030301 24 ITTVLFFGFGLWSLWD 39 (179)
Q Consensus 24 ~aa~lF~~FG~~~L~~ 39 (179)
+.++..++.|+..+.-
T Consensus 88 ~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 88 IIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5667777889888763
No 6
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=14.09 E-value=82 Score=17.06 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 030301 23 HITTVLFFGFGLW 35 (179)
Q Consensus 23 ~~aa~lF~~FG~~ 35 (179)
.+++.+|++|+..
T Consensus 2 ~laa~~FlyFa~l 14 (26)
T 1btq_A 2 VLAAVIFIYFAAL 14 (26)
T ss_pred hHHHHHHHHHHHH
Confidence 4678889998864
No 7
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=11.04 E-value=2.5e+02 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHHH
Q 030301 145 GKSLASQISEKIVALSGGVLFIVFGI 170 (179)
Q Consensus 145 G~~l~~~l~~~~i~~~~g~lFl~fg~ 170 (179)
...+...+|+..+..++|+.+.+.|=
T Consensus 27 ~~~~~~~v~~~v~i~v~glaKvfVge 52 (89)
T 1bh9_B 27 QSITGTSVSQNVVIAMSGISKVFVGE 52 (89)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHH
Confidence 33455678888888888888888774
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.89 E-value=2.1e+02 Score=17.28 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=15.6
Q ss_pred CCcEeehHHHHHHHHHHHHHHHHHHHHh
Q 030301 122 NPFGVVLGGIIGQALCTTAAVIGGKSLA 149 (179)
Q Consensus 122 ~~~~V~~G~~~a~~l~t~lav~~G~~l~ 149 (179)
+|.+.++|...|.++.-.++...+-++-
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhhee
Confidence 4455566777775555555555555443
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=10.20 E-value=5.7e+02 Score=20.74 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Q 030301 140 AAVIGGKSLASQISEKIVALSGGVLFIVFGIQS 172 (179)
Q Consensus 140 lav~~G~~l~~~l~~~~i~~~~g~lFl~fg~~~ 172 (179)
++.+++-.+++|+-.|.+-.++.++|.+.++..
T Consensus 70 iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~ 102 (491)
T 4gc0_A 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGS 102 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 344445556666777777777777777766543
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.55 E-value=2e+02 Score=19.26 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 030301 23 HITTVLFFGFGLWSLWDA 40 (179)
Q Consensus 23 ~~aa~lF~~FG~~~L~~~ 40 (179)
+.+++|| +.|+.++...
T Consensus 22 ifA~vLf-i~GI~iilS~ 38 (72)
T 2jo1_A 22 VIAGILF-ILGILIVLSR 38 (72)
T ss_dssp HHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHcC
Confidence 3455666 7787776644
Done!