Query 030301
Match_columns 179
No_of_seqs 165 out of 1114
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 18:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 39.4 60 0.0044 23.1 10.2 29 137-165 271-299 (417)
2 d2r6gg1 f.58.1.1 (G:7-296) Mal 10.9 2.7E+02 0.02 19.9 7.0 19 91-109 206-224 (290)
3 d1kqfb2 f.23.22.1 (B:246-290) 10.1 87 0.0063 17.7 2.3 13 20-32 11-23 (45)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 9.4 3.1E+02 0.023 19.6 8.8 75 92-167 25-101 (447)
5 d2r6gf2 f.58.1.1 (F:261-504) M 5.5 4.6E+02 0.033 18.1 5.9 25 90-114 162-186 (244)
6 d1jb0i_ f.23.17.1 (I:) Subunit 4.7 2.6E+02 0.019 14.9 2.3 30 9-38 3-33 (38)
7 d1jb0k_ f.30.1.1 (K:) Photosys 4.5 1.2E+02 0.0086 18.0 0.8 15 136-150 2-16 (58)
8 d2bl8a1 a.29.8.2 (A:4-103) Ent 4.4 69 0.005 21.2 -0.5 12 101-112 89-100 (100)
9 d1rlra1 a.98.1.1 (A:10-221) R1 3.8 1.7E+02 0.012 20.9 1.4 14 28-41 133-146 (212)
10 d1q90m_ f.23.25.1 (M:) PetM su 3.7 3.3E+02 0.024 13.9 3.2 24 127-150 5-28 (34)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=39.43 E-value=60 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 030301 137 CTTAAVIGGKSLASQISEKIVALSGGVLF 165 (179)
Q Consensus 137 ~t~lav~~G~~l~~~l~~~~i~~~~g~lF 165 (179)
+..++......+.+|...+.+-.++.++.
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~ 299 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccccchhhhHHHH
Confidence 33444444445556666665555554444
No 2
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=10.91 E-value=2.7e+02 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHhcccCcH
Q 030301 91 SPIFLKAFSITFFGEWGDK 109 (179)
Q Consensus 91 ~~~~~~af~~~flaE~GDK 109 (179)
.|....++++.|+.-|+|=
T Consensus 206 ~p~i~~~~il~fi~~~~~f 224 (290)
T d2r6gg1 206 VPILAVVFILSFIAAITEV 224 (290)
T ss_dssp HHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHhhhhcccc
Confidence 4778888888888888774
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=10.13 E-value=87 Score=17.71 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 030301 20 LTHHITTVLFFGF 32 (179)
Q Consensus 20 ~~~~~aa~lF~~F 32 (179)
+++.++.+.|..-
T Consensus 11 v~Kpl~~~~~~~~ 23 (45)
T d1kqfb2 11 ALKPLAAAGFIAT 23 (45)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3455555555433
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.38 E-value=3.1e+02 Score=19.60 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHh-cccCCcEeehHHH-HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 030301 92 PIFLKAFSITFFGEWGDKSQLATIGLA-ADENPFGVVLGGI-IGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIV 167 (179)
Q Consensus 92 ~~~~~af~~~flaE~GDKTQl~t~~La-a~~~~~~V~~G~~-~a~~l~t~lav~~G~~l~~~l~~~~i~~~~g~lFl~ 167 (179)
..+...|. .+.....|++-+..+.-- .+.+.-..-+|-. ....+...++...+-.+.+|...|.+-.++.++..+
T Consensus 25 ~i~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 25 QIFLGIFF-GYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHH-HHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 44444443 455555676554433222 2333333344443 233444556666666777888888876666555433
No 5
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.53 E-value=4.6e+02 Score=18.06 Aligned_cols=25 Identities=4% Similarity=-0.019 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHhcccCcHHHHHH
Q 030301 90 FSPIFLKAFSITFFGEWGDKSQLAT 114 (179)
Q Consensus 90 ~~~~~~~af~~~flaE~GDKTQl~t 114 (179)
..+....++++.|+.=++|=.....
T Consensus 162 ~~p~i~~~~il~fi~~~~~f~~~~~ 186 (244)
T d2r6gf2 162 LIKPLTPLMIASFAFNFNNFVLIQL 186 (244)
T ss_dssp THHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcchhhHhhh
Confidence 3578888899999998888664433
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=4.66 E-value=2.6e+02 Score=14.91 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=18.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHH-HHHHHHhh
Q 030301 9 GWVAPNLISRKLTHHITTVLFF-GFGLWSLW 38 (179)
Q Consensus 9 G~~l~~~lp~~~~~~~aa~lF~-~FG~~~L~ 38 (179)
|.+..+++|--.+..+.-.+.. .+|+..+|
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHhee
Confidence 4555667777666666655554 56665555
No 7
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=4.53 E-value=1.2e+02 Score=18.03 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhh
Q 030301 136 LCTTAAVIGGKSLAS 150 (179)
Q Consensus 136 l~t~lav~~G~~l~~ 150 (179)
+|+++++.+|++--+
T Consensus 2 ~cN~lai~ig~~tI~ 16 (58)
T d1jb0k_ 2 LCNLFAIALGRYAIQ 16 (58)
T ss_dssp HHHHHHHHHHHC-CC
T ss_pred eehhHHHHHHHHHHc
Confidence 689999999998543
No 8
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=4.36 E-value=69 Score=21.21 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=8.7
Q ss_pred HHhcccCcHHHH
Q 030301 101 TFFGEWGDKSQL 112 (179)
Q Consensus 101 ~flaE~GDKTQl 112 (179)
+.+|-++||+||
T Consensus 89 vY~s~~~dksQF 100 (100)
T d2bl8a1 89 LYRADYGDKSQF 100 (100)
T ss_dssp CCSSSTTCGGGC
T ss_pred eeecCCchhccC
Confidence 456778888885
No 9
>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=1.7e+02 Score=20.86 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhh
Q 030301 28 LFFGFGLWSLWDAF 41 (179)
Q Consensus 28 lF~~FG~~~L~~~~ 41 (179)
.|=+||+++|++.|
T Consensus 133 ~f~YfG~kTL~~~Y 146 (212)
T d1rlra1 133 TFSYAAVKQLEGKY 146 (212)
T ss_dssp GCCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHhh
Confidence 47799999999998
No 10
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.72 E-value=3.3e+02 Score=13.92 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=0.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHhh
Q 030301 127 VLGGIIGQALCTTAAVIGGKSLAS 150 (179)
Q Consensus 127 ~~G~~~a~~l~t~lav~~G~~l~~ 150 (179)
+.|..+-|+-+|.++...|-.+-+
T Consensus 5 iagta~tmig~tl~glaigfvllr 28 (34)
T d1q90m_ 5 IAGTALTMVGMTLVGLAIGFVLLR 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHHHHHHHhhee
Done!