BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030302
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2
SV=1
Length = 177
Score = 263 bits (671), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/180 (85%), Positives = 164/180 (91%), Gaps = 4/180 (2%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
MII E NR+EICKYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP GDR RGPPR DGDR
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120
Query: 121 PRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRGGGGY-GAAPSGSGFP 179
PRFGDR+GYRGGPRGGD EKGGAPADFQPSF+G GGRPGFGRG GGY AAPSGSGFP
Sbjct: 121 PRFGDRDGYRGGPRGGD---EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAAAPSGSGFP 177
>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10
PE=2 SV=2
Length = 183
Score = 254 bits (648), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/159 (86%), Positives = 146/159 (91%), Gaps = 3/159 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
MIIP+KNR EICKYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETF+
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGG-PGGDRPRGPPRFDGD 119
W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P GRP G P GDRPRGPPRF+GD
Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120
Query: 120 RPRFGDREGYRGGPRG--GDFGGEKGGAPADFQPSFRGS 156
RPRFGDR+GYRGGPRG GDFGGEKGGAPA+FQPSFR S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSS 159
>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2
SV=2
Length = 179
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/180 (80%), Positives = 156/180 (86%), Gaps = 2/180 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
MII E NRKEICKYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKS+EYVRETFA
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP GRP GGP GDR RGP GDR
Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120
Query: 121 PRFGDREGYRGGPRG-GDFGGEKGGAPADFQPSFRGSGGRPGFGRGGGGYGAAPSGSGFP 179
PRFGDR+GYR GPR G+FGGEKGGAPAD+QPSF+GSG G G GG AAPSGSG P
Sbjct: 121 PRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRGAGGYS-AAAPSGSGLP 179
>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2
SV=1
Length = 180
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/152 (69%), Positives = 120/152 (78%), Gaps = 3/152 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
MII E NR+EI KYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKS+EYVRETF
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGD 119
AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK KP GRP GG G
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGP--PRGDG 118
Query: 120 RPRFGDREGYRGGPRGGDFGGEKGGAPADFQP 151
RFGDR+GYRGGP+ G G+K GAPAD+QP
Sbjct: 119 ERRFGDRDGYRGGPKSGGEYGDKAGAPADYQP 150
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1
Length = 156
Score = 149 bits (377), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 108/167 (64%), Gaps = 19/167 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M++ +KNR I +YLF+EGV AKKD++L KH EIDVPNL VI+ MQS SR YV+E F
Sbjct: 1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFC 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
W HYYWYL N+GI++LR +L+LP EIVPATLK+ +P RPR P+ R
Sbjct: 61 WRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRPE--------AARPR--PKEGAPR 110
Query: 121 PRFG-DREGYRGGPRGGDFGGEKG-GAPADFQPSFRGSGGRPGFGRG 165
+ G DR GYR G G D GE G GA +FQ FRG GFGRG
Sbjct: 111 AQVGEDRAGYRRGFGGSDKKGEAGAGADTNFQ--FRG-----GFGRG 150
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2
SV=1
Length = 158
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 106/169 (62%), Gaps = 19/169 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
M++P++NR I +YLF+EGV AKKDY+ KHP+++ +PNLQVIK MQS KSR YV+E F
Sbjct: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGD 119
AW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S + G G RP P R
Sbjct: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRAETVRRGAVG--RPDAPAR---- 114
Query: 120 RPRFGDREGYRGGPR---GGDFGGEKGGAPADFQPSFRGSGGRPGFGRG 165
DR YR P D + G AD + FRG GFGRG
Sbjct: 115 --SAEDRSAYRRAPTTPAAHDKKADVGPGSADLE--FRG-----GFGRG 154
>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1
Length = 165
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 104/157 (66%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+GP +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKGP---E 110
Query: 118 GDRP-RF----GDREGYR--GGPRGGDFGGEKGGAPA 147
G+RP RF DR+ YR P G D E G A
Sbjct: 111 GERPARFTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1
Length = 165
Score = 146 bits (368), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 104/157 (66%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+GP +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKGP---E 110
Query: 118 GDRP-RF----GDREGYR--GGPRGGDFGGEKGGAPA 147
G+RP RF DR+ YR P G D E G A
Sbjct: 111 GERPARFTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1
Length = 165
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 102/157 (64%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+G +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKG---LE 110
Query: 118 GDRP-RF----GDREGYR--GGPRGGDFGGEKGGAPA 147
G+RP R DR+ YR P G D E G A
Sbjct: 111 GERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1
Length = 165
Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 102/157 (64%), Gaps = 20/157 (12%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFD 117
FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S GRP RP+G +
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRP-------RPKG---LE 110
Query: 118 GDRP-RF----GDREGYR--GGPRGGDFGGEKGGAPA 147
G+RP R DR+ YR P G D E G A
Sbjct: 111 GERPARLTRGEADRDTYRRSAVPPGADKKAEAGAGSA 147
>sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b
PE=1 SV=2
Length = 160
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 105/168 (62%), Gaps = 14/168 (8%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
M +P+ +R I +YLF+EGV AKKD++ KHPE++ +PNL VIK MQS SR V+E F
Sbjct: 1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAG-RPMGGPGGDRPRGPPRFDG 118
AW HYYWYLTN+GIE LR+YL+LP EIVP+TLK+ A+ RP GG PRGP G
Sbjct: 61 AWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPARSETVRPRPAVGG--PRGP----G 114
Query: 119 DRPRFG-DREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRPGFGRG 165
D + G DR YR P G + P + FRG GFGRG
Sbjct: 115 DASKTGEDRSAYRRAPGGSGVDKKGDVGPGAGEVEFRG-----GFGRG 157
>sp|O13614|RS10B_SCHPO 40S ribosomal protein S10-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10b PE=3 SV=1
Length = 147
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 101/160 (63%), Gaps = 16/160 (10%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M+IP++NRK I + LFQ+GV AKKD+NL KHPE+ VPNLQVIK QS SR Y++ +
Sbjct: 1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYN 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
W +Y+ LTN+G+E+LR YL+LP+E+VPAT K+ +PA P RP PR +R
Sbjct: 61 WGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPA-----APRAGRPE--PR---ER 110
Query: 121 PRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRP 160
D GYR + D G AP F PSFRG GRP
Sbjct: 111 SSAAD-AGYRRAEKKDD-----GAAPGGFAPSFRGGFGRP 144
>sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1
Length = 166
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 100/148 (67%), Gaps = 21/148 (14%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD +LAKHPE+ +VPNL V+K MQS KS YV+E
Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP-AGRPMGGPGGDRPRGPPRF 116
FAW H+YWYLTN+GI++LR +L+LP EIVPATL++ +P RP RP+G
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRPETARP-------RPKG---L 110
Query: 117 DGDRP-RF----GDREGYR--GGPRGGD 137
+G+RP R GDR+ YR P G D
Sbjct: 111 EGERPARLARGEGDRDAYRRSAAPPGAD 138
>sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1
Length = 165
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 91/124 (73%), Gaps = 4/124 (3%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+K+R I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR YV+E
Sbjct: 1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM-GGPGGDRPRGPPRF 116
FAW H+YWYLTN+GI++LR +L+LP EIVPATL++S GRP G G+RP PR
Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRSRPETGRPRPKGLEGERPPRLPRG 120
Query: 117 DGDR 120
+ DR
Sbjct: 121 ETDR 124
>sp|O14112|RS10A_SCHPO 40S ribosomal protein S10-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps10a PE=3 SV=1
Length = 144
Score = 136 bits (342), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 98/160 (61%), Gaps = 17/160 (10%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M+IP++NRK I + LF +GV AKKD+NL KHPE+ VPNLQVIK QS SR Y++ +
Sbjct: 1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYN 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDR 120
W +Y+ LTN+G+E+LR YL+LP+E+VPAT K+ +P P RP R D
Sbjct: 61 WGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPT-----APRAGRPEPRERASAD- 114
Query: 121 PRFGDREGYRGGPRGGDFGGEKGGAPADFQPSFRGSGGRP 160
GYR + ++G AP+ F PSFRG GRP
Sbjct: 115 ------AGYRRAEK-----KDEGAAPSGFAPSFRGGFGRP 143
>sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like OS=Homo sapiens GN=RPS10P5
PE=5 SV=1
Length = 176
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 100/163 (61%), Gaps = 14/163 (8%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRE 57
M++P+KNR I + LF+EGV AKKD ++ KHPE+ +VPNL V+K MQS KSR V+E
Sbjct: 1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKE 60
Query: 58 TFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKK--SAKPAGRPMGGPGGDRPRGPPR 115
FAW H+YWYLTN+G ++LR YL+LP EIVPATL PA P RPR P
Sbjct: 61 QFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATLHLPPEIVPATLHRSRPETGRPR-PKG 119
Query: 116 FDGDRP-----RFGDREGYR--GGPRGGDFGGEKG-GAPADFQ 150
+G RP R DR+ YR P G D E G G+ +FQ
Sbjct: 120 LEGKRPARLTRREADRDTYRRCSVPPGADKKAEAGAGSATEFQ 162
>sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a
PE=2 SV=1
Length = 163
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETF 59
M IP+ NR I +YLF+EGV AKKD + KH E+D +PNLQVIK+MQS SR +V+E F
Sbjct: 1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQF 60
Query: 60 AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 96
AW H+YW LTN+GIE LR YL+LP EIVP+TL ++ +
Sbjct: 61 AWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97
>sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10
PE=1 SV=3
Length = 154
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 2 IIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFA 60
+IP +N+ I +YLFQEGV A KD++LAKHP+I+ V NL V+++++SFKSR++V ETF
Sbjct: 3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFN 62
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSA 95
W +YYW LT +GI++LRTYL +P +VPAT+KK A
Sbjct: 63 WQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97
>sp|Q08745|RS10A_YEAST 40S ribosomal protein S10-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10A PE=1 SV=1
Length = 105
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 72/101 (71%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M++P+++R +I +YLFQEGV AKKD+N AKH EID NL VIK +QS S+ YV+ F+
Sbjct: 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRP 101
W +YY+ LT +G+E+LR YLNLP IVP T + P RP
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQRP 101
>sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS10B PE=1 SV=1
Length = 105
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 72/101 (71%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60
M++P++ R +I +YLFQEGV AKKD+N AKH EID NL VIK +QS S+ YV+ F+
Sbjct: 1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFS 60
Query: 61 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRP 101
W +YY+ LT +G+E+LR YLNLP IVP T + P+ RP
Sbjct: 61 WQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPSQRP 101
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2
Length = 4687
Score = 115 bits (288), Expect = 1e-25, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 97/178 (54%), Gaps = 26/178 (14%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEI-DVPNLQVIKLMQSFKSREYVRET 58
M++P + I + LF+EGV AKKD + HP + V NLQV++ M S K+R VRET
Sbjct: 5 MLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRET 64
Query: 59 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAG------------RPMGGPG 106
FAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++ +P + M GP
Sbjct: 65 FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRRSPHVQTMQGPL 124
Query: 107 GDRP-RGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPAD--FQPSFRGSGGRPG 161
G P RGP + P +R+ YR R + GAP + G+ RPG
Sbjct: 125 GCPPKRGP--LPAEDPAREERQVYRRKER-------EEGAPETPVVSATIVGTLARPG 173
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 114 bits (286), Expect = 3e-25, Method: Composition-based stats.
Identities = 72/178 (40%), Positives = 97/178 (54%), Gaps = 26/178 (14%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEI-DVPNLQVIKLMQSFKSREYVRET 58
M++P + I + LF+EGV AKKD + HP + V NLQV++ M S K+R VRET
Sbjct: 5 MLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRET 64
Query: 59 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAG------------RPMGGPG 106
FAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++ +P + M GP
Sbjct: 65 FAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRPVAMVIPARRRSPHVQTMQGPL 124
Query: 107 GDRP-RGPPRFDGDRPRFGDREGYRGGPRGGDFGGEKGGAPAD--FQPSFRGSGGRPG 161
G P RGP + P +R+ YR R + GAP + G+ RPG
Sbjct: 125 GCPPKRGP--LPAEDPAREERQVYRRKER-------EEGAPETPVVSATTVGTLARPG 173
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 109 bits (273), Expect = 8e-24, Method: Composition-based stats.
Identities = 59/127 (46%), Positives = 77/127 (60%), Gaps = 14/127 (11%)
Query: 1 MIIPEKNRKEICKYLFQEGVCYAKKDYN-LAKHPEI-DVPNLQVIKLMQSFKSREYVRET 58
M++P + I + LF+EGV AKKD + HP + V NLQV++ M S ++R VRET
Sbjct: 5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRET 64
Query: 59 FAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM-----------GGPGG 107
FAW H+YWYLTN+GI LR YL+LP EIVPA+L++ +P M GP G
Sbjct: 65 FAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQAVQGPLG 124
Query: 108 DRP-RGP 113
P RGP
Sbjct: 125 SPPKRGP 131
>sp|Q9AC25|IF2_CAUCR Translation initiation factor IF-2 OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=infB PE=3 SV=2
Length = 1009
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 23/33 (69%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 105 PGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGD 137
P GDRPRG PR DGDRP+ GDR GYRG GD
Sbjct: 253 PEGDRPRG-PRPDGDRPQ-GDRGGYRGDRPQGD 283
>sp|B8HG54|IF2_ARTCA Translation initiation factor IF-2 OS=Arthrobacter chlorophenolicus
(strain A6 / ATCC 700700 / DSM 12829 / JCM 12360)
GN=infB PE=3 SV=1
Length = 954
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 95 AKPAGRPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGGPRGGD------------FGGEK 142
AKP RP GP + P PR G G GGPR G+ GG+
Sbjct: 121 AKPGARP--GPKAETPAPAPRQGGSSQ--GSSAPRPGGPRPGNNPFATSQGMPRGRGGDG 176
Query: 143 GGAPADFQPSFRGSGGRPGFGRGGG 167
AP F S G P GR G
Sbjct: 177 DRAPRPGNNPFATSQGMPRPGRSDG 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.145 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,420,984
Number of Sequences: 539616
Number of extensions: 5399292
Number of successful extensions: 39971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 962
Number of HSP's that attempted gapping in prelim test: 19259
Number of HSP's gapped (non-prelim): 11462
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)