Query 030302
Match_columns 179
No_of_seqs 140 out of 245
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:54:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_7 Plectin/S10 domain cont 100.0 5.9E-68 2E-72 430.2 9.6 122 1-132 1-125 (162)
2 3u5c_K 40S ribosomal protein S 100.0 1.1E-65 3.6E-70 393.5 7.7 102 1-102 1-102 (105)
3 1ub9_A Hypothetical protein PH 96.7 0.00096 3.3E-08 45.6 2.7 72 4-80 14-88 (100)
4 3cuo_A Uncharacterized HTH-typ 96.5 0.0016 5.6E-08 44.5 2.9 72 4-80 22-93 (99)
5 3f6o_A Probable transcriptiona 96.3 0.0038 1.3E-07 45.4 4.3 73 3-81 15-87 (118)
6 2oqg_A Possible transcriptiona 96.2 0.0021 7.1E-08 45.3 2.3 72 4-81 19-90 (114)
7 3f6v_A Possible transcriptiona 96.1 0.0054 1.9E-07 47.4 4.5 72 4-81 56-127 (151)
8 3jth_A Transcription activator 96.0 0.0026 8.9E-08 44.2 2.0 72 3-80 20-91 (98)
9 1tbx_A ORF F-93, hypothetical 95.7 0.011 3.6E-07 41.0 4.1 72 8-80 10-81 (99)
10 2kko_A Possible transcriptiona 95.2 0.0051 1.8E-07 44.2 1.0 71 4-80 23-93 (108)
11 2jsc_A Transcriptional regulat 95.1 0.026 8.8E-07 41.1 4.5 73 4-82 19-92 (118)
12 2qvo_A Uncharacterized protein 94.8 0.031 1.1E-06 38.9 4.0 46 35-80 40-85 (95)
13 3pqk_A Biofilm growth-associat 94.7 0.0075 2.6E-07 42.3 0.8 72 3-80 20-91 (102)
14 2zkz_A Transcriptional repress 94.7 0.022 7.4E-07 40.3 3.2 72 4-81 25-96 (99)
15 1u2w_A CADC repressor, cadmium 94.4 0.016 5.6E-07 42.4 2.0 69 5-78 41-109 (122)
16 3b73_A PHIH1 repressor-like pr 94.3 0.013 4.5E-07 43.9 1.2 71 6-82 13-83 (111)
17 1xmk_A Double-stranded RNA-spe 94.2 0.011 3.6E-07 42.4 0.6 65 6-76 11-76 (79)
18 2bv6_A MGRA, HTH-type transcri 93.9 0.05 1.7E-06 38.9 3.6 68 8-80 39-109 (142)
19 2hgc_A YJCQ protein; SR346, st 93.6 0.038 1.3E-06 41.6 2.7 64 7-78 6-75 (102)
20 2gxg_A 146AA long hypothetical 93.3 0.076 2.6E-06 37.8 3.8 45 36-80 61-108 (146)
21 2nnn_A Probable transcriptiona 93.3 0.083 2.9E-06 37.2 3.9 46 35-80 62-110 (140)
22 2fbi_A Probable transcriptiona 93.1 0.087 3E-06 37.2 3.8 67 8-79 38-107 (142)
23 1r1u_A CZRA, repressor protein 93.1 0.035 1.2E-06 39.3 1.6 69 4-78 24-93 (106)
24 3df8_A Possible HXLR family tr 92.7 0.087 3E-06 38.1 3.4 69 3-77 24-94 (111)
25 3bdd_A Regulatory protein MARR 92.7 0.079 2.7E-06 37.5 3.1 42 35-76 55-99 (142)
26 3tgn_A ADC operon repressor AD 92.6 0.059 2E-06 38.6 2.4 68 7-80 39-109 (146)
27 1r7j_A Conserved hypothetical 92.6 0.077 2.6E-06 38.1 3.0 41 35-79 30-70 (95)
28 2eth_A Transcriptional regulat 92.4 0.11 3.9E-06 37.8 3.7 45 36-80 69-116 (154)
29 3oop_A LIN2960 protein; protei 92.3 0.096 3.3E-06 37.5 3.2 45 36-80 62-109 (143)
30 2rdp_A Putative transcriptiona 92.3 0.11 3.9E-06 37.2 3.6 45 36-80 67-114 (150)
31 2esh_A Conserved hypothetical 92.2 0.14 4.6E-06 37.4 3.9 46 37-82 46-96 (118)
32 2hr3_A Probable transcriptiona 92.2 0.11 3.9E-06 37.1 3.4 45 36-80 61-108 (147)
33 1q1h_A TFE, transcription fact 92.2 0.03 1E-06 39.6 0.3 65 6-74 18-88 (110)
34 3bja_A Transcriptional regulat 91.9 0.14 4.7E-06 36.1 3.5 68 8-80 35-105 (139)
35 2a61_A Transcriptional regulat 91.9 0.14 4.9E-06 36.3 3.6 45 36-80 58-105 (145)
36 1z7u_A Hypothetical protein EF 91.9 0.16 5.4E-06 36.4 3.8 70 3-78 19-92 (112)
37 2qww_A Transcriptional regulat 91.6 0.11 3.6E-06 37.6 2.7 47 36-82 66-117 (154)
38 3bpv_A Transcriptional regulat 91.6 0.11 3.9E-06 36.5 2.8 45 36-80 54-101 (138)
39 1jgs_A Multiple antibiotic res 91.5 0.16 5.6E-06 35.8 3.6 46 35-80 58-106 (138)
40 3l7w_A Putative uncharacterize 91.5 0.22 7.5E-06 35.8 4.3 48 35-82 36-87 (108)
41 1yyv_A Putative transcriptiona 91.3 0.084 2.9E-06 39.5 2.0 70 4-79 33-106 (131)
42 3eco_A MEPR; mutlidrug efflux 91.3 0.18 6E-06 35.8 3.6 45 36-80 58-105 (139)
43 1lj9_A Transcriptional regulat 91.2 0.17 5.9E-06 36.0 3.5 45 36-80 54-101 (144)
44 3f8b_A Transcriptional regulat 91.1 0.28 9.6E-06 35.9 4.6 47 35-81 43-94 (116)
45 3cjn_A Transcriptional regulat 91.1 0.18 6.3E-06 36.8 3.5 68 8-80 54-124 (162)
46 2fbh_A Transcriptional regulat 90.9 0.17 5.8E-06 35.9 3.1 44 36-79 63-109 (146)
47 2hzt_A Putative HTH-type trans 90.8 0.14 4.9E-06 36.3 2.7 69 3-77 11-83 (107)
48 1xma_A Predicted transcription 90.8 0.26 8.8E-06 37.8 4.3 47 36-82 73-124 (145)
49 2dql_A PEX protein; circadian 90.7 0.27 9.3E-06 36.1 4.2 46 35-80 52-103 (115)
50 3elk_A Putative transcriptiona 90.7 0.23 7.9E-06 36.6 3.8 47 37-83 45-96 (117)
51 2fa5_A Transcriptional regulat 90.6 0.13 4.4E-06 37.5 2.3 45 36-80 74-121 (162)
52 3cdh_A Transcriptional regulat 90.5 0.17 5.9E-06 36.6 3.0 45 36-80 68-115 (155)
53 2pg4_A Uncharacterized protein 90.5 0.17 5.8E-06 34.9 2.7 44 36-79 41-86 (95)
54 3g3z_A NMB1585, transcriptiona 90.4 0.16 5.4E-06 36.5 2.6 45 36-80 56-103 (145)
55 3bro_A Transcriptional regulat 90.2 0.16 5.3E-06 36.0 2.4 45 36-80 61-108 (141)
56 1s3j_A YUSO protein; structura 90.2 0.24 8.2E-06 35.6 3.4 46 35-80 61-109 (155)
57 3u2r_A Regulatory protein MARR 90.0 0.34 1.2E-05 35.8 4.3 46 36-81 73-121 (168)
58 3boq_A Transcriptional regulat 89.9 0.16 5.5E-06 36.9 2.4 45 36-80 73-120 (160)
59 3bj6_A Transcriptional regulat 89.9 0.22 7.5E-06 35.8 3.0 44 36-79 65-111 (152)
60 2nyx_A Probable transcriptiona 89.8 0.27 9.2E-06 36.6 3.6 45 35-79 69-116 (168)
61 2co5_A Viral protein F93; vira 89.8 0.24 8.2E-06 36.1 3.2 48 36-83 41-88 (99)
62 3s2w_A Transcriptional regulat 89.7 0.29 9.8E-06 35.8 3.6 45 36-80 75-122 (159)
63 3hsr_A HTH-type transcriptiona 89.7 0.19 6.6E-06 36.1 2.6 45 36-80 61-108 (140)
64 1yg2_A Gene activator APHA; vi 89.4 0.25 8.6E-06 38.2 3.3 50 36-85 34-88 (179)
65 3e6m_A MARR family transcripti 89.4 0.27 9.3E-06 36.1 3.3 46 35-80 77-125 (161)
66 3hhh_A Transcriptional regulat 89.4 0.4 1.4E-05 35.4 4.2 47 36-82 43-94 (116)
67 4esf_A PADR-like transcription 89.3 0.36 1.2E-05 35.6 3.9 48 36-83 41-93 (117)
68 1z91_A Organic hydroperoxide r 89.3 0.13 4.4E-06 36.8 1.4 67 8-79 42-111 (147)
69 3deu_A Transcriptional regulat 89.3 0.26 8.8E-06 37.0 3.1 45 36-80 79-126 (166)
70 3f3x_A Transcriptional regulat 89.2 0.32 1.1E-05 34.7 3.5 46 35-80 60-108 (144)
71 1sfx_A Conserved hypothetical 89.1 0.34 1.2E-05 32.6 3.4 69 6-79 20-90 (109)
72 2pex_A Transcriptional regulat 89.0 0.18 6E-06 36.5 1.9 45 35-79 71-118 (153)
73 3u1d_A Uncharacterized protein 88.6 0.31 1.1E-05 38.6 3.3 77 3-84 26-113 (151)
74 3k0l_A Repressor protein; heli 88.6 0.35 1.2E-05 35.5 3.4 45 36-80 71-118 (162)
75 4hbl_A Transcriptional regulat 88.6 0.25 8.7E-06 35.8 2.6 45 36-80 66-113 (149)
76 3ech_A MEXR, multidrug resista 88.3 0.22 7.7E-06 35.6 2.1 45 36-80 62-109 (142)
77 1okr_A MECI, methicillin resis 88.3 0.36 1.2E-05 34.0 3.2 71 8-79 12-83 (123)
78 2frh_A SARA, staphylococcal ac 88.1 0.26 8.8E-06 35.6 2.4 45 36-80 64-111 (127)
79 3jw4_A Transcriptional regulat 87.9 0.19 6.4E-06 36.3 1.5 45 36-80 68-115 (148)
80 1on2_A Transcriptional regulat 87.8 0.32 1.1E-05 35.2 2.7 41 35-78 32-72 (142)
81 4esb_A Transcriptional regulat 87.7 0.56 1.9E-05 34.4 4.0 47 36-82 39-90 (115)
82 3l4g_A Phenylalanyl-tRNA synth 87.5 0.11 3.7E-06 48.2 0.0 50 35-87 30-80 (508)
83 2d1h_A ST1889, 109AA long hypo 87.4 0.54 1.9E-05 31.6 3.5 48 34-81 45-98 (109)
84 3nrv_A Putative transcriptiona 87.4 0.31 1.1E-05 34.9 2.4 45 36-80 65-112 (148)
85 2x4h_A Hypothetical protein SS 87.2 0.37 1.3E-05 34.6 2.7 41 35-79 41-81 (139)
86 3kp7_A Transcriptional regulat 87.0 0.32 1.1E-05 35.1 2.3 45 36-80 62-111 (151)
87 1y0u_A Arsenical resistance op 86.1 0.1 3.5E-06 36.2 -0.8 59 4-73 29-87 (96)
88 2fsw_A PG_0823 protein; alpha- 86.1 0.36 1.2E-05 34.1 2.1 69 3-77 22-94 (107)
89 2e1n_A PEX, period extender; c 85.8 0.46 1.6E-05 36.4 2.7 48 35-82 64-117 (138)
90 3ri2_A Transcriptional regulat 85.8 0.8 2.7E-05 34.3 4.0 47 35-81 48-98 (123)
91 3fm5_A Transcriptional regulat 85.5 0.49 1.7E-05 34.1 2.6 45 36-80 65-112 (150)
92 2fxa_A Protease production reg 85.4 0.58 2E-05 36.8 3.2 47 36-82 73-122 (207)
93 2htj_A P fimbrial regulatory p 85.4 0.12 4.3E-06 34.9 -0.6 61 8-73 2-64 (81)
94 1r1t_A Transcriptional repress 85.1 0.8 2.7E-05 33.5 3.7 68 5-78 45-113 (122)
95 3nqo_A MARR-family transcripti 83.7 0.91 3.1E-05 34.7 3.6 45 36-80 68-115 (189)
96 3aaf_A Werner syndrome ATP-dep 83.6 1.1 3.9E-05 34.0 4.0 51 37-87 65-117 (134)
97 4aik_A Transcriptional regulat 82.3 1.1 3.8E-05 33.3 3.5 44 36-79 57-103 (151)
98 4b8x_A SCO5413, possible MARR- 81.8 1.2 4E-05 32.8 3.4 44 36-79 62-108 (147)
99 2fbk_A Transcriptional regulat 81.2 0.4 1.4E-05 36.1 0.7 44 36-79 97-143 (181)
100 3l9f_A Putative uncharacterize 80.2 1.4 4.7E-05 35.7 3.6 50 36-85 68-122 (204)
101 2qq9_A Diphtheria toxin repres 79.9 0.93 3.2E-05 36.2 2.5 48 35-85 34-95 (226)
102 2qlz_A Transcription factor PF 78.7 1.1 3.6E-05 37.1 2.5 66 4-75 10-81 (232)
103 3hrs_A Metalloregulator SCAR; 78.5 1.2 4.1E-05 35.5 2.7 72 8-87 8-93 (214)
104 2lkp_A Transcriptional regulat 78.4 2 6.8E-05 30.2 3.6 70 5-80 31-101 (119)
105 2f2e_A PA1607; transcription f 75.7 1 3.5E-05 33.9 1.5 67 3-75 21-89 (146)
106 2zfw_A PEX; five alpha-helices 75.4 0.76 2.6E-05 35.7 0.7 47 35-81 74-126 (148)
107 2wte_A CSA3; antiviral protein 74.0 1.7 5.8E-05 35.9 2.5 70 7-83 153-222 (244)
108 1fx7_A Iron-dependent represso 71.8 1.9 6.6E-05 34.3 2.3 40 35-77 34-73 (230)
109 2h09_A Transcriptional regulat 69.9 2.8 9.5E-05 30.7 2.6 41 36-79 65-105 (155)
110 2p4w_A Transcriptional regulat 69.9 1.2 4.2E-05 35.7 0.7 66 4-75 13-83 (202)
111 2dk5_A DNA-directed RNA polyme 68.6 1.3 4.5E-05 31.7 0.6 48 7-60 21-71 (91)
112 2vxz_A Pyrsv_GP04; viral prote 68.4 2.6 8.8E-05 34.3 2.3 60 6-71 11-70 (165)
113 2heo_A Z-DNA binding protein 1 68.2 1.4 4.7E-05 29.4 0.6 56 7-69 11-66 (67)
114 3cta_A Riboflavin kinase; stru 65.5 5.3 0.00018 31.5 3.6 74 6-79 7-81 (230)
115 2xvc_A ESCRT-III, SSO0910; cel 65.3 1.3 4.6E-05 30.6 0.1 44 9-56 13-56 (59)
116 4fx0_A Probable transcriptiona 65.0 3.2 0.00011 30.6 2.1 44 36-79 63-108 (148)
117 2g9w_A Conserved hypothetical 64.8 4.7 0.00016 29.4 3.0 66 7-73 10-78 (138)
118 4a5n_A Uncharacterized HTH-typ 64.7 3.7 0.00013 31.0 2.4 68 3-76 23-94 (131)
119 2yu3_A DNA-directed RNA polyme 59.1 1.5 5E-05 32.3 -0.7 50 7-60 38-88 (95)
120 2p8t_A Hypothetical protein PH 59.0 4.8 0.00017 33.1 2.3 44 34-81 39-82 (200)
121 1bm9_A RTP, TER, replication t 58.0 11 0.00037 28.9 4.0 45 34-80 49-104 (122)
122 3r0a_A Putative transcriptiona 43.8 16 0.00054 26.4 2.8 49 6-58 26-75 (123)
123 1ku9_A Hypothetical protein MJ 43.6 16 0.00054 25.3 2.7 34 36-69 52-88 (152)
124 1qbj_A Protein (double-strande 43.1 4.7 0.00016 28.3 -0.2 62 3-70 7-71 (81)
125 2o0m_A Transcriptional regulat 40.3 5.9 0.0002 33.5 0.0 60 7-76 21-81 (345)
126 2fu4_A Ferric uptake regulatio 38.8 4.4 0.00015 26.9 -0.9 59 5-68 16-82 (83)
127 1whz_A Hypothetical protein; a 37.8 19 0.00064 23.8 2.2 22 1-23 1-22 (70)
128 1oyi_A Double-stranded RNA-bin 37.8 9.4 0.00032 27.4 0.7 60 5-71 16-75 (82)
129 1sd4_A Penicillinase repressor 37.7 31 0.0011 23.9 3.4 64 8-72 12-76 (126)
130 3lwf_A LIN1550 protein, putati 37.5 5.9 0.0002 30.7 -0.4 56 1-60 20-79 (159)
131 3l09_A Putative transcriptiona 37.3 28 0.00094 29.5 3.7 42 36-77 56-97 (266)
132 1p6r_A Penicillinase repressor 36.8 21 0.00073 23.4 2.4 61 6-67 9-69 (82)
133 3t8r_A Staphylococcus aureus C 31.1 5.5 0.00019 29.9 -1.5 55 1-59 4-62 (143)
134 3qph_A TRMB, A global transcri 30.9 17 0.00058 31.1 1.4 58 9-71 21-78 (342)
135 1p4x_A Staphylococcal accessor 30.8 35 0.0012 27.9 3.2 44 36-79 185-231 (250)
136 4ev1_A Anabena TIC22; TIC22 fo 27.0 74 0.0025 26.9 4.6 60 1-78 161-221 (252)
137 1hsj_A Fusion protein consisti 26.8 42 0.0014 28.5 3.1 44 36-79 431-477 (487)
138 2o03_A Probable zinc uptake re 23.4 9.6 0.00033 27.8 -1.4 54 5-60 10-66 (131)
139 2lnb_A Z-DNA-binding protein 1 22.7 36 0.0012 24.7 1.6 56 8-70 21-76 (80)
140 1z6r_A MLC protein; transcript 22.7 13 0.00045 31.4 -0.8 50 3-57 13-62 (406)
141 1mkm_A ICLR transcriptional re 21.4 55 0.0019 26.0 2.6 39 35-76 33-71 (249)
142 3mwm_A ZUR, putative metal upt 20.9 11 0.00038 28.0 -1.5 54 4-59 12-68 (139)
143 3m8e_A Putative DNA-binding pr 20.6 97 0.0033 23.4 3.7 43 36-78 71-113 (124)
144 3nvo_A Zinc transport protein 20.6 43 0.0015 26.5 1.8 36 56-92 39-74 (264)
145 2y75_A HTH-type transcriptiona 20.4 15 0.00053 26.2 -0.8 35 36-71 37-71 (129)
146 3eyy_A Putative iron uptake re 20.1 11 0.00037 28.3 -1.7 53 4-59 17-72 (145)
147 2ld4_A Anamorsin; methyltransf 20.0 2.1E+02 0.0071 20.4 5.4 77 6-87 82-158 (176)
No 1
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=100.00 E-value=5.9e-68 Score=430.22 Aligned_cols=122 Identities=34% Similarity=0.582 Sum_probs=97.4
Q ss_pred Cc-cchhhHHHHHHHhhhcccEEEeecCCCCCCCccc-cCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHH
Q 030302 1 MI-IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (179)
Q Consensus 1 Ml-ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~-VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~ 78 (179)
|| |||+||++||++||||||||||||++ +||||+ ||||||||+||||+|||||||||||||||||||||||+|||+
T Consensus 1 Ml~ipK~nR~~IYe~LFkeGV~VaKKD~~--kHpel~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (162)
T 2xzm_7 1 MVHVLKATKIRIYKQLLQDGVFVLKKDFE--GHHEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKT 78 (162)
T ss_dssp -CCCCHHHHHHHHHHHHHHTEEEEESCSS--SBCTTTCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHhhcCcEEEecccc--CCCcccCcCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHH
Confidence 99 99999999999999999999999999 999997 999999999999999999999999999999999999999999
Q ss_pred hhCCCCC-CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 030302 79 YLNLPSE-IVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFGDREGYRGG 132 (179)
Q Consensus 79 yLhLP~e-iVPaTlk~~~~~~~rp~~~~~g~r~~~~~r~~~~~~~~~dR~~YRr~ 132 (179)
|||||+| |||+||+++.+++.||+++ +++.+.++ ...+||++|||+
T Consensus 79 yLhLP~e~IVPaTlk~~~~~~~rp~~~---~~~~r~~r-----~~~~dR~~YRr~ 125 (162)
T 2xzm_7 79 KLGISADNVIPKTFKASNVNFISKEED---EEERPRRQ-----FNKGGRTGERDG 125 (162)
T ss_dssp HHCSSTTSCCCGGGSCCCCCCCCCCCC----------------------------
T ss_pred HhCCCccccccchhccccCCCCCCCCC---CCCCCCCC-----CCCCChhhhhcc
Confidence 9999999 9999999998887777542 11111111 112689999985
No 2
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=100.00 E-value=1.1e-65 Score=393.52 Aligned_cols=102 Identities=53% Similarity=0.952 Sum_probs=95.4
Q ss_pred CccchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 1 MlipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
|||||+||++|||+||||||||||||+++|+|||++||||||||+||||+|||||||||||||||||||||||+|||+||
T Consensus 1 MlipK~~r~~IYe~LFkEGV~vakKD~~~~kH~el~vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yL 80 (105)
T 3u5c_K 1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYL 80 (105)
T ss_dssp CCCCHHHHHHHHHHHHHHSEEECCSCSCCSSCSSSSSCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHT
T ss_pred CCccchhHHHHHHHHhhCCcEEEEcCCCCCCCCccCccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCCCCCC
Q 030302 81 NLPSEIVPATLKKSAKPAGRPM 102 (179)
Q Consensus 81 hLP~eiVPaTlk~~~~~~~rp~ 102 (179)
|||+|||||||++++++++||+
T Consensus 81 hLP~eivPaTl~~~~~~~~rp~ 102 (105)
T 3u5c_K 81 NLPEHIVPGTYIQERNPTQRPQ 102 (105)
T ss_dssp CCCSSCCSSCSCCSCC------
T ss_pred CCCchhcCccccccCCCCCCCC
Confidence 9999999999999888877773
No 3
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.65 E-value=0.00096 Score=45.56 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=54.5
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
...++..|..+|.+++-+- -.+.. ..++|+.=.|...++.|...|+|...- .-+..||.||++|.+.+.+++
T Consensus 14 ~~~~~~~iL~~L~~~~~~~-~~ela----~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRRKAP-FSQIQ----KVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp HSHHHHHHHHHHHHHSEEE-HHHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhcCCcC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 4567889999998766442 22322 134578888999999999999998655 568899999999988777654
No 4
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.48 E-value=0.0016 Score=44.46 Aligned_cols=72 Identities=7% Similarity=0.034 Sum_probs=54.2
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
...++..|+..|.+.+-+- -+|.. ..++|+.=.|-..++.|.+.|+|...-.=+..||.||++|++.|-+.|
T Consensus 22 ~~~~~~~il~~l~~~~~~s-~~ela----~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 22 SHPKRLLILCMLSGSPGTS-AGELT----RITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp CSHHHHHHHHHHTTCCSEE-HHHHH----HHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCCcC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 4567888998887654332 22221 134588888999999999999998877788999999999998776655
No 5
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.33 E-value=0.0038 Score=45.36 Aligned_cols=73 Identities=10% Similarity=0.161 Sum_probs=57.1
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhC
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLh 81 (179)
+...+|..|..+|.+ |-+. -.|.. ..++|+.=.|-+.|+.|...|+|+..-.-++.||.||+++++-|.++|.
T Consensus 15 l~~~~R~~Il~~L~~-~~~~-~~eLa----~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 15 LADPTRRAVLGRLSR-GPAT-VSELA----KPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp HTSHHHHHHHHHHHT-CCEE-HHHHH----TTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHh-CCCC-HHHHH----HHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 345789999999984 4442 23332 2456888889999999999999998877899999999999987776654
No 6
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.21 E-value=0.0021 Score=45.26 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=52.7
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhC
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLh 81 (179)
...+|..|...| .+|-+ .-.|. ...++|+.=.|...++.|...|+|...-.-|..||.||++|++.+.+.+.
T Consensus 19 ~~~~r~~IL~~L-~~~~~-~~~el----a~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 19 SDETRWEILTEL-GRADQ-SASSL----ATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLE 90 (114)
T ss_dssp TCHHHHHHHHHH-HHSCB-CHHHH----HHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred CChHHHHHHHHH-HcCCC-CHHHH----HHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence 345778888888 55532 11121 11345888889999999999999987666789999999999987766553
No 7
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.14 E-value=0.0054 Score=47.36 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=57.5
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhC
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLh 81 (179)
...+|..|...|.+ |-+. -.+.. ..++|+.=.|-..|+-|+..|+|+..-..|..||.||++|++-|.+.|.
T Consensus 56 ~~p~R~~IL~~L~~-~~~t-~~eLa----~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~ 127 (151)
T 3f6v_A 56 AEPTRRRLVQLLTS-GEQT-VNNLA----AHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFD 127 (151)
T ss_dssp TSHHHHHHHHHGGG-CCEE-HHHHH----TTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-CCCC-HHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 45679999999984 4332 22322 2456888889999999999999998888999999999999999988763
No 8
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.03 E-value=0.0026 Score=44.24 Aligned_cols=72 Identities=10% Similarity=0.151 Sum_probs=55.3
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
+...+|..|.++|.+ |-+-+ .|.. ..++|+.=.|-+.|+.|...|+|+..-.-++.||.||+++++.|-++|
T Consensus 20 l~~~~r~~Il~~L~~-~~~~~-~ela----~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 20 MANERRLQILCMLHN-QELSV-GELC----AKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp HCSHHHHHHHHHTTT-SCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhc-CCCCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 345678899999876 53321 1211 134588888999999999999998888888999999999998877765
No 9
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.74 E-value=0.011 Score=41.05 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
...|...|.+.|-+- .+|...-.-..+.|+.=.|.++++.|..+|||.....=|..+++||++|.+++.+..
T Consensus 10 q~~iL~~l~~~~~~~-~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIA-TYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp HHHHHHHHTTCTTCB-HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcC-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 345666776654321 122100000134577778999999999999999887779999999999999987653
No 10
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.19 E-value=0.0051 Score=44.22 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=53.5
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
....|..|...|.+ |-+ .-+|.. ..++|+.=.|-+.++.|+..|+|+..-.-+..||.||++++.-|-+.|
T Consensus 23 ~~~~r~~IL~~L~~-~~~-s~~eLa----~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l 93 (108)
T 2kko_A 23 ANGRRLQILDLLAQ-GER-AVEAIA----TATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALV 93 (108)
T ss_dssp TTSTTHHHHHHHTT-CCE-EHHHHH----HHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCc-CHHHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 34567889988864 433 222321 234688889999999999999998777778899999999997776665
No 11
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.09 E-value=0.026 Score=41.08 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=51.3
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHH-HHHhhCC
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEF-LRTYLNL 82 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~Y-LR~yLhL 82 (179)
....|..|...|. +|-+- -.|. -..++|+.=.|-+.++.|+..|+|...-.-++.||.||+++++- |...+.+
T Consensus 19 ~~~~r~~IL~~L~-~~~~~-~~eL----a~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~~~ 92 (118)
T 2jsc_A 19 ADPTRCRILVALL-DGVCY-PGQL----AAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELVQV 92 (118)
T ss_dssp SSHHHHHHHHHHH-TTCCS-TTTH----HHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCCSS
T ss_pred CCHHHHHHHHHHH-cCCCC-HHHH----HHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHHHH
Confidence 3467889999886 33210 0111 11235888899999999999999987766788999999999954 4444444
No 12
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.78 E-value=0.031 Score=38.90 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=39.5
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
+.|+.=.|..+++.|..+|||...-.-|-.+++||++|.+++.+..
T Consensus 40 l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 40 VNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence 4588889999999999999996666678889999999999987643
No 13
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.75 E-value=0.0075 Score=42.27 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=53.3
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhh
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yL 80 (179)
+....|..|..+|.+ |-+- -.|. -..++|+.=.|-+.|+.|...|+|...-.-++.||.||+++++-|-+.|
T Consensus 20 l~~~~r~~Il~~L~~-~~~~-~~el----a~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l 91 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE-GEFS-VGEL----EQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNAL 91 (102)
T ss_dssp HCSHHHHHHHHHHHT-CCBC-HHHH----HHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCC-HHHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHH
Confidence 346788999999964 4321 1121 1123577888999999999999998877778999999999997766654
No 14
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.72 E-value=0.022 Score=40.29 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=55.4
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhC
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLh 81 (179)
...+|.+|...|..+|-+.+ .+.. ..++++.=.|-+.++.|... +|...-.-++.||.||+++++-|.++|.
T Consensus 25 ~~~~Rl~IL~~l~~~~~~~~-~ela----~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHKALNV-TQII----QILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp CSHHHHHHHHHHHHHSCEEH-HHHH----HHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 34678899988877664422 1221 23468888999999999999 9987778899999999999988887764
No 15
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=94.42 E-value=0.016 Score=42.38 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=48.6
Q ss_pred hhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHH
Q 030302 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (179)
Q Consensus 5 K~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~ 78 (179)
..+|..|...|.++|-+-+ .|.. ..++|+.=.|-+.++.|...|+|...-.-++.||.||+++|.-|-+
T Consensus 41 ~~~rl~IL~~L~~~~~~s~-~eLa----~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCV-CDIA----NILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEH-HHHH----HHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCH-HHHH----HHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 4568889999986654422 2221 2346888889999999999999987666688999999999865443
No 16
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=94.26 E-value=0.013 Score=43.89 Aligned_cols=71 Identities=15% Similarity=0.270 Sum_probs=51.2
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhCC
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLhL 82 (179)
....+|.+.|-++|-+-+ .+.. .+-++.|.--.|-+.|+.|...|+|+.. . |. +|.||++|.+||.+.+.-
T Consensus 13 ~~d~~IL~~L~~~g~~s~-~eLA--~~l~~giS~~aVs~rL~~Le~~GLV~~~-~-rg-~Y~LT~~G~~~l~~~~d~ 83 (111)
T 3b73_A 13 IWDDRILEIIHEEGNGSP-KELE--DRDEIRISKSSVSRRLKKLADHDLLQPL-A-NG-VYVITEEGEAYLNGEYDA 83 (111)
T ss_dssp HHHHHHHHHHHHHSCBCH-HHHH--TSTTCCSCHHHHHHHHHHHHHTTSEEEC-S-TT-CEEECHHHHHHHTTCEET
T ss_pred HHHHHHHHHHHHcCCCCH-HHHH--HHHhcCCCHHHHHHHHHHHHHCCCEEec-C-Cc-eEEECchHHHHHHHHHHH
Confidence 345689999988885422 2221 2212267888999999999999999875 3 33 999999999999865443
No 17
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=94.20 E-value=0.011 Score=42.40 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=49.5
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCH-HHHHHhhhcccccccceeeeceeeeeeechhhHHHH
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNL-QVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFL 76 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL-~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YL 76 (179)
.++.+|+.+|.+.|=+-|+ |.- .+|+|+-- .|-+.|++|...|+|..+=.=|- +|.||++|-+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~-eiA----~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP-~w~LT~~g~~~~ 76 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSAL-NLA----KNIGLTKARDINAVLIDMERQGDVYRQGTTPP-IWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHH-HHH----HHHCGGGHHHHHHHHHHHHHTTSEEEECSSSC-EEEECHHHHTTT
T ss_pred hHHHHHHHHHHHcCCcCHH-HHH----HHcCCCcHHHHHHHHHHHHHCCCEEecCCCCC-CeEeCHhHHhHh
Confidence 5688999999999876533 221 24568888 99999999999999974423355 999999997654
No 18
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.86 E-value=0.05 Score=38.85 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
...|...|.+.+-+ ..+|.. ..+.|+.=.|.++++.|.++|||...-. -|..|+.||++|.+++.+..
T Consensus 39 ~~~iL~~l~~~~~~-~~~ela----~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 39 QFLVLTILWDESPV-NVKKVV----TELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHHHHHHHHHSSEE-EHHHHH----HHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCc-CHHHHH----HHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 34566667665532 233322 1234666778999999999999988765 78899999999999988754
No 19
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=93.62 E-value=0.038 Score=41.63 Aligned_cols=64 Identities=22% Similarity=0.196 Sum_probs=48.9
Q ss_pred hHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeee------eeechhhHHHHHH
Q 030302 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYY------WYLTNDGIEFLRT 78 (179)
Q Consensus 7 nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Y------w~LTneGI~YLR~ 78 (179)
...+|..+|.+++. ++ .+..+.|+.-....+++.|...||++-..-|+.-+ =.+|-+||+||.+
T Consensus 6 iiYkIL~~L~~~~~-------~i-s~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~E 75 (102)
T 2hgc_A 6 LRYAILKEIFEGNT-------PL-SENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKE 75 (102)
T ss_dssp CHHHHHHHHHHHCS-------CC-CHHHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHH
T ss_pred eHHHHHHHHHhCCC-------cC-CHHhcCCCHHHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHH
Confidence 45678888888432 22 23456799999999999999999999876665422 2489999999998
No 20
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.30 E-value=0.076 Score=37.82 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=38.3
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...-. -|..|+.||++|.+++.+..
T Consensus 61 ~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 61 FVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 4777889999999999999987643 78899999999999987643
No 21
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=93.29 E-value=0.083 Score=37.24 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=38.5
Q ss_pred cccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
+.|+.=.|.++++.|.++|||...- .-|..++.||++|.+++.+..
T Consensus 62 l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (140)
T 2nnn_A 62 TAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL 110 (140)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH
Confidence 3578888999999999999998753 468899999999999887643
No 22
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.09 E-value=0.087 Score=37.23 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=47.5
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~y 79 (179)
...|...|.+.+-+ ..+|.. ..+.|+.=.|.++++.|..+|||...- .-|..|++||++|.+++.+.
T Consensus 38 ~~~iL~~l~~~~~~-t~~ela----~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 38 QWRVIRILRQQGEM-ESYQLA----NQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp HHHHHHHHHHHCSE-EHHHHH----HHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHH----HHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 34566666654432 222321 123577788999999999999998653 46889999999999988754
No 23
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=93.07 E-value=0.035 Score=39.34 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=49.5
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhH-HHHHH
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI-EFLRT 78 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI-~YLR~ 78 (179)
....|..|...|.+.++-+ .|. -..++|+.=.|-+.++.|...|+|...-.=++.||.||++++ +++..
T Consensus 24 ~~~~r~~IL~~L~~~~~~~--~el----a~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~ 93 (106)
T 1r1u_A 24 GDYNRIRIMELLSVSEASV--GHI----SHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQ 93 (106)
T ss_dssp CSHHHHHHHHHHHHCCBCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 3467888999887432211 111 112358888899999999999999876666899999999998 45544
No 24
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=92.73 E-value=0.087 Score=38.12 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=50.7
Q ss_pred cchhhHHHHHHHhhhcccEE-EeecCCCCCCCcc-ccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHH
Q 030302 3 IPEKNRKEICKYLFQEGVCY-AKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLR 77 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~V-akKD~~~p~Hpel-~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR 77 (179)
+..+.+..|...|. +|-+- --.|.. ..+ .|..=.|.+.++.|...|+|+..-. +..+|.||++|.+.+.
T Consensus 24 l~~~wrl~IL~~L~-~g~~~~~~~eL~----~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 24 LGKKYTMLIISVLG-NGSTRQNFNDIR----SSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRN 94 (111)
T ss_dssp HHSTTHHHHHHHHT-SSSSCBCHHHHH----HTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHH
T ss_pred HcCccHHHHHHHHh-cCCCCCCHHHHH----HHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHH
Confidence 34567888888887 55431 112221 245 4778889999999999999988777 9999999999976543
No 25
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=92.68 E-value=0.079 Score=37.46 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=37.3
Q ss_pred cccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHH
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFL 76 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YL 76 (179)
+.|+.=.|..+++.|..+|||...-. -|..++.||++|.+++
T Consensus 55 l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 55 LQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 35788889999999999999987765 7889999999999998
No 26
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=92.64 E-value=0.059 Score=38.56 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=45.2
Q ss_pred hHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 7 nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
....|...|...+ +..+|.. ..+.|+.=.|..+++.|..+|||...- .-|..|+.||++|.+++.+..
T Consensus 39 ~~~~iL~~l~~~~--~t~~eLa----~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 39 TQEHILMLLSEES--LTNSELA----RRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHHHTTCC--CCHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCHHHHH----HHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 3456667776655 2233321 123588889999999999999998766 688999999999999988764
No 27
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.63 E-value=0.077 Score=38.09 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=34.4
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~y 79 (179)
++++.=.|-+.+..|+++|||... ... |.||++|.++|..+
T Consensus 30 ~~ls~~~~~~~l~~L~~~GLI~~~-~~~---~~LT~kG~~~l~~l 70 (95)
T 1r7j_A 30 ANLSYALTGRYIKMLMDLEIIRQE-GKQ---YMLTKKGEELLEDI 70 (95)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE-TTE---EEECHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHCCCeEEE-CCe---eEEChhHHHHHHHH
Confidence 358888999999999999999876 333 78999999888754
No 28
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.43 E-value=0.11 Score=37.83 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=38.5
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||...- .-|..+++||++|.+++.+..
T Consensus 69 ~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 69 STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 478889999999999999998764 467889999999999987643
No 29
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=92.33 E-value=0.096 Score=37.52 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=38.0
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||...- .-|..++.||++|.+++.+..
T Consensus 62 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 109 (143)
T 3oop_A 62 KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR 109 (143)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence 578888999999999999998764 567899999999999987643
No 30
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=92.31 E-value=0.11 Score=37.17 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=36.4
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .-|..|++||++|.+.+.+..
T Consensus 67 ~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 67 YLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 578888999999999999998754 468889999999999887654
No 31
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=92.23 E-value=0.14 Score=37.38 Aligned_cols=46 Identities=11% Similarity=0.263 Sum_probs=36.7
Q ss_pred cCC-HHHHHHhhhcccccccceeee----ceeeeeeechhhHHHHHHhhCC
Q 030302 37 VPN-LQVIKLMQSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 37 VpN-L~ViK~mqSLkSrGyVkEqFa----Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
|.. =.|..+|+.|...|||+..-. =+.-||.||++|.+.|.+.+..
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 555 667889999999999987542 2456779999999999987654
No 32
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=92.21 E-value=0.11 Score=37.08 Aligned_cols=45 Identities=9% Similarity=0.029 Sum_probs=36.2
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 61 ~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 61 RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 478888999999999999998763 468899999999999887643
No 33
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.20 E-value=0.03 Score=39.65 Aligned_cols=65 Identities=17% Similarity=0.413 Sum_probs=48.2
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhccccccccee------eeceeeeeeechhhHH
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRET------FAWMHYYWYLTNDGIE 74 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEq------FaWrh~Yw~LTneGI~ 74 (179)
.++..|...|++.|--+...+.. ..++|+.-.|-++++.|.+.|+|... -.|..+||.|+.+.|.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa----~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~ 88 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIA----NQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQIN 88 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHH----HTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC
T ss_pred hHHHHHHHHHHHcCCCCCHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHH
Confidence 46778888888776222223321 24568888999999999999999754 5788889999998773
No 34
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=91.91 E-value=0.14 Score=36.06 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=46.7
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
...|...|.+.+-+ ..+|.. ..+.|+.=.|..+++.|..+|||...- .-|..|++||++|.+++.+..
T Consensus 35 ~~~iL~~l~~~~~~-~~~ela----~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 35 QFGVIQVLAKSGKV-SMSKLI----ENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp HHHHHHHHHHSCSE-EHHHHH----HHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-CHHHHH----HHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 34566666654432 122221 123467778899999999999998653 468899999999999887643
No 35
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.91 E-value=0.14 Score=36.34 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=38.3
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .-|..++.||++|.+++.+..
T Consensus 58 ~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 58 GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 577888999999999999998864 457889999999999887643
No 36
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=91.86 E-value=0.16 Score=36.42 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=49.9
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCcc-ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHH
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRT 78 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel-~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~ 78 (179)
+..+.+..|...|.+ |-+ .-.|.. ..+ .|..=.|...++.|...|||...-. -|..||.||++|.+.+..
T Consensus 19 l~~~~~~~IL~~L~~-~~~-~~~eLa----~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~ 92 (112)
T 1z7u_A 19 INGKWKLSLMDELFQ-GTK-RNGELM----RALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYDA 92 (112)
T ss_dssp TCSTTHHHHHHHHHH-SCB-CHHHHH----HHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHH
T ss_pred HcCccHHHHHHHHHh-CCC-CHHHHH----HHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHH
Confidence 345556677777775 432 122221 234 5788889999999999999987654 588999999999977653
No 37
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=91.63 E-value=0.11 Score=37.62 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=39.8
Q ss_pred ccCCHHHHHHhhhcccccccce-----eeeceeeeeeechhhHHHHHHhhCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkE-----qFaWrh~Yw~LTneGI~YLR~yLhL 82 (179)
.|+.=.|..+++.|..+|||.. .-.-|.+|+.||++|.+++.+....
T Consensus 66 ~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 66 IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 4777789999999999999987 3457889999999999998876543
No 38
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=91.56 E-value=0.11 Score=36.54 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=38.0
Q ss_pred ccCCHHHHHHhhhccccccccee---eeceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEq---FaWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||... ..-|..|+.||++|.+++.+..
T Consensus 54 ~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 54 HVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 47778899999999999999875 3468899999999998887643
No 39
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=91.51 E-value=0.16 Score=35.82 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=38.7
Q ss_pred cccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
+.++.=.|.++++.|..+|||...- .-|..|++||++|.+++.+..
T Consensus 58 l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 58 LSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 3577788999999999999998753 468889999999999987654
No 40
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=91.49 E-value=0.22 Score=35.80 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=38.9
Q ss_pred cccCCHHHHHHhhhcccccccceeee----ceeeeeeechhhHHHHHHhhCC
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa----Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
++|..=.|..+++.|...|||...-. =+.-||.||++|.+.|.+....
T Consensus 36 ~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 36 ASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred hCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 45777889999999999999987532 2477899999999999886543
No 41
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=91.35 E-value=0.084 Score=39.52 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=50.3
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCcc-ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHh
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel-~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~y 79 (179)
..+.+..|...|. +|-+- -.+.. ..+ .|..=.|...++.|...|||...-. =|..||.||++|.+.+...
T Consensus 33 ~~~w~l~IL~~L~-~g~~~-~~eLa----~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l 106 (131)
T 1yyv_A 33 TSRWGVLILVALR-DGTHR-FSDLR----RXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXV 106 (131)
T ss_dssp HSHHHHHHHHHGG-GCCEE-HHHHH----HHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred cCCcHHHHHHHHH-cCCCC-HHHHH----HHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHH
Confidence 3455667888887 55442 22322 134 3788889999999999999987654 5889999999998866543
No 42
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=91.33 E-value=0.18 Score=35.83 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=37.3
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|..+++.|..+|||...- .-|..|..||++|.+.+.+..
T Consensus 58 ~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 58 QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 477788999999999999998764 478899999999999987643
No 43
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=91.23 E-value=0.17 Score=35.95 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=38.3
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .-|..|+.||++|.+++.+..
T Consensus 54 ~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 54 KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence 477788999999999999998765 468899999999999887543
No 44
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=91.06 E-value=0.28 Score=35.90 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=38.2
Q ss_pred cccCCHHHHHHhhhcccccccceee-----eceeeeeeechhhHHHHHHhhC
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETF-----AWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqF-----aWrh~Yw~LTneGI~YLR~yLh 81 (179)
++|..=.|..+++.|...|||+... .=+--||.||++|.++|.+.+.
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~ 94 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFE 94 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 4577778999999999999998653 1356788999999999988664
No 45
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=91.05 E-value=0.18 Score=36.76 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=48.0
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
...|...|.+.+-+ ..+|.. ..+.|+.=.|.++++.|..+|||...- .-|..++.||++|.+++.+..
T Consensus 54 ~~~iL~~l~~~~~~-t~~ela----~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 54 KMRALAILSAKDGL-PIGTLG----IFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp HHHHHHHHHHSCSE-EHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHH----HHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 34566666654432 222221 123578888999999999999998754 578899999999999887643
No 46
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.87 E-value=0.17 Score=35.86 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.9
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~y 79 (179)
.|+.=.|..+++.|..+|||...- .-|..|++||++|.+++.+.
T Consensus 63 ~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 63 GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 478888999999999999998754 36888999999999988764
No 47
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=90.83 E-value=0.14 Score=36.34 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=49.6
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCcc-ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHH
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLR 77 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel-~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR 77 (179)
+..+.+..|...|. +|-+- -.|.. ..+ .|..=.|...++.|...|+|+..-. =|..||.||++|.+++.
T Consensus 11 l~~~~~~~IL~~L~-~~~~~-~~eLa----~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 11 IGGKWKXVILXHLT-HGKKR-TSELK----RLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HCSTTHHHHHHHHT-TCCBC-HHHHH----HHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HcCccHHHHHHHHH-hCCCC-HHHHH----HHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 45566777888887 44331 12221 234 5777889999999999999987654 67899999999977554
No 48
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=90.78 E-value=0.26 Score=37.77 Aligned_cols=47 Identities=11% Similarity=0.324 Sum_probs=37.9
Q ss_pred ccCCHHHHHHhhhcccccccceeee-----ceeeeeeechhhHHHHHHhhCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa-----Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
.|..=.|..+|+.|...|||+..-. =+--||.||++|.+.|.+++..
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 124 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 124 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 4677788999999999999977542 1456779999999999987644
No 49
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=90.74 E-value=0.27 Score=36.10 Aligned_cols=46 Identities=0% Similarity=-0.002 Sum_probs=37.9
Q ss_pred cccCCHHHHHHhhhcccccccceeee------ceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa------Wrh~Yw~LTneGI~YLR~yL 80 (179)
++|..=.|..+|+.|...|||...-. =+.-||.||++|.+.|.+++
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~ 103 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLA 103 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHH
Confidence 45777889999999999999986532 13578999999999998876
No 50
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=90.67 E-value=0.23 Score=36.65 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=37.7
Q ss_pred cCCHHHHHHhhhcccccccceeee-----ceeeeeeechhhHHHHHHhhCCC
Q 030302 37 VPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP 83 (179)
Q Consensus 37 VpNL~ViK~mqSLkSrGyVkEqFa-----Wrh~Yw~LTneGI~YLR~yLhLP 83 (179)
++.=.|..+|+.|...|||..... =+--||.||++|.++|.+++..-
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~ 96 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQAL 96 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTH
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 555688999999999999986532 24568899999999999887653
No 51
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=90.58 E-value=0.13 Score=37.51 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=34.3
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||...- .-|..++.||++|.+++.+..
T Consensus 74 ~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 74 AMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 478888999999999999998654 467788999999999887643
No 52
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=90.54 E-value=0.17 Score=36.65 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .-|..+++||++|.+++.+..
T Consensus 68 ~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 68 LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 478888999999999999998653 467889999999999887643
No 53
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=90.46 E-value=0.17 Score=34.86 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=36.7
Q ss_pred ccCCHH-HHHHhhhcccccccce-eeeceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQ-VIKLMQSFKSREYVRE-TFAWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~-ViK~mqSLkSrGyVkE-qFaWrh~Yw~LTneGI~YLR~y 79 (179)
.|+.=. |..+++.|..+|||+. ...-|..++.||++|.+.+.+.
T Consensus 41 ~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~ 86 (95)
T 2pg4_A 41 GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECL 86 (95)
T ss_dssp CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHH
Confidence 478888 9999999999999972 2345788999999999988764
No 54
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=90.35 E-value=0.16 Score=36.47 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=37.9
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .-|..|+.||++|.+++.+..
T Consensus 56 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 56 SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 477888999999999999998643 468899999999999886543
No 55
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=90.17 E-value=0.16 Score=35.96 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=37.4
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||...-. -|..|..||++|.+.+.+..
T Consensus 61 ~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~ 108 (141)
T 3bro_A 61 SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH
Confidence 4777889999999999999987653 67889999999987776543
No 56
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.15 E-value=0.24 Score=35.64 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=38.5
Q ss_pred cccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
+.|+.=.|..+++.|..+|||...-. -|..++.||++|.+++.+..
T Consensus 61 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (155)
T 1s3j_A 61 MEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL 109 (155)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 35788899999999999999987643 57889999999998887643
No 57
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=89.97 E-value=0.34 Score=35.81 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=36.9
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhhC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yLh 81 (179)
.|..=.|..+++.|..+|||...-. =|..+.+||++|.+.+.+...
T Consensus 73 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 73 ISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp ---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 4777789999999999999987654 688999999999988876543
No 58
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=89.92 E-value=0.16 Score=36.87 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=34.3
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|.++++.|..+|||..+- .-|..|++||++|.+++.+..
T Consensus 73 ~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 73 KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp SSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 467777899999999999998753 568899999999999987643
No 59
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=89.89 E-value=0.22 Score=35.75 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=37.6
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~y 79 (179)
.|+.=.|..+++.|..+|||...-. =|..++.||++|.+++.+.
T Consensus 65 ~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 65 QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 5777889999999999999988653 6788999999999988764
No 60
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=89.80 E-value=0.27 Score=36.60 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=38.0
Q ss_pred cccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~y 79 (179)
+.|+.=.|..+++.|..+|||...-. -|..++.||++|.+.+.+.
T Consensus 69 l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 69 LGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 35788889999999999999987543 7889999999999887653
No 61
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=89.79 E-value=0.24 Score=36.07 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=38.6
Q ss_pred ccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhCCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP 83 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLhLP 83 (179)
++..=.+.-+++.|...|||...-.=+--||.||++|.++|.+.+.-+
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 466778899999999999998753224568899999999999987543
No 62
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=89.69 E-value=0.29 Score=35.82 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|.++++.|..+|||...- .-|..+.+||++|.+.+.+..
T Consensus 75 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 122 (159)
T 3s2w_A 75 KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK 122 (159)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 477788999999999999998765 567899999999999887643
No 63
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=89.69 E-value=0.19 Score=36.10 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=35.8
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|.++++.|..+|||..+- .=|..+.+||++|.+++.+..
T Consensus 61 ~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 61 FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 478888999999999999998764 458899999999999887643
No 64
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=89.42 E-value=0.25 Score=38.22 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=39.3
Q ss_pred ccCCHHHHHHhhhcccccccceeeec-----eeeeeeechhhHHHHHHhhCCCCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFAW-----MHYYWYLTNDGIEFLRTYLNLPSE 85 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFaW-----rh~Yw~LTneGI~YLR~yLhLP~e 85 (179)
++..=+|..+++.|...|+|...-.= +--+|.||++|.+.|.+++.-|.+
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~ 88 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA 88 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCccc
Confidence 47778999999999999999864321 345679999999999999988754
No 65
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=89.38 E-value=0.27 Score=36.13 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=38.5
Q ss_pred cccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
+.|+.=.|..+++.|..+|||...-. -|..+.+||++|.+.+.+..
T Consensus 77 l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 77 GVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 35788889999999999999986643 67899999999999887654
No 66
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=89.36 E-value=0.4 Score=35.39 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=37.5
Q ss_pred ccCCHHHHHHhhhcccccccceeee-----ceeeeeeechhhHHHHHHhhCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa-----Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
+|..=.|..+|+.|...|+|..... =+--||.||++|.++|.+.+..
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 4677789999999999999986531 1356889999999999887643
No 67
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=89.34 E-value=0.36 Score=35.62 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=38.2
Q ss_pred ccCCHHHHHHhhhcccccccceeee-----ceeeeeeechhhHHHHHHhhCCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP 83 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa-----Wrh~Yw~LTneGI~YLR~yLhLP 83 (179)
+|..=.|..+|+.|...|+|..... =+--||.||++|.++|.+.+...
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~ 93 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKW 93 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 4566689999999999999987631 13568899999999999877554
No 68
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=89.30 E-value=0.13 Score=36.78 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=47.9
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~y 79 (179)
...|...|.+.+-+ ..+|.. ..+.|+.=.|.++++.|..+|||...-. -|..|++||++|.+++.+.
T Consensus 42 ~~~iL~~l~~~~~~-~~~~la----~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 42 QYLALLLLWEHETL-TVKKMG----EQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp HHHHHHHHHHHSEE-EHHHHH----HTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HHHHHHHHHHCCCC-CHHHHH----HHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 34566666665532 233322 1245788889999999999999987543 6889999999999887653
No 69
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=89.25 E-value=0.26 Score=36.97 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=35.2
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|..+++.|..+|||...- .-|..+.+||++|.+.+.+..
T Consensus 79 ~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 79 GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 578888999999999999998765 567899999999999887643
No 70
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=89.21 E-value=0.32 Score=34.73 Aligned_cols=46 Identities=13% Similarity=0.043 Sum_probs=38.7
Q ss_pred cccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
+.|+.=.|..+++.|..+|||...- .=|..++.||++|.+.+.+..
T Consensus 60 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 60 YFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 3577888999999999999998764 468899999999999887643
No 71
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.15 E-value=0.34 Score=32.56 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=49.4
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee--ceeeeeeechhhHHHHHHh
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA--WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa--Wrh~Yw~LTneGI~YLR~y 79 (179)
..+..|+.+|.+.+-+- -++. ...++|+.=.|..+++.|..+|+|...-. -|..|.+||++|.+.+...
T Consensus 20 ~~~~~il~~l~~~~~~s-~~el----a~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMR-VSEI----ARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp HHHHHHHHHHHHHCCBC-HHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-HHHH----HHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 45678888887654321 1111 11235888899999999999999987553 6678899999999887754
No 72
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=88.96 E-value=0.18 Score=36.53 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=35.2
Q ss_pred cccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~y 79 (179)
+.|+.=.|..+++.|..+|||...- .=|..++.||++|.+++.+.
T Consensus 71 l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 71 LYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred hCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 3578888999999999999998764 45788999999999887654
No 73
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=88.65 E-value=0.31 Score=38.61 Aligned_cols=77 Identities=13% Similarity=0.202 Sum_probs=53.8
Q ss_pred cchhhHHHHHHHhhhc--ccEEEeecCCCCCCCccc-cCCHHHHHHhhhccccccccee-eec-------eeeeeeechh
Q 030302 3 IPEKNRKEICKYLFQE--GVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRET-FAW-------MHYYWYLTND 71 (179)
Q Consensus 3 ipK~nr~~IYe~LFkE--GV~VakKD~~~p~Hpel~-VpNL~ViK~mqSLkSrGyVkEq-FaW-------rh~Yw~LTne 71 (179)
+-..+|.+|+++|+.. +.+.+. +.. ..+. |.-=-|-..|+.|+.-|+|++. +.| -+.||.||++
T Consensus 26 l~~~tR~~IL~~Ll~~p~~~~ta~-eL~----~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~ 100 (151)
T 3u1d_A 26 VLHETRLDVLHQILAQPDGVLSVE-ELL----YRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGE 100 (151)
T ss_dssp HCCHHHHHHHHHHHHSTTSCBCHH-HHH----HHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHH
T ss_pred hcchHHHHHHHHHHcCCCCCCCHH-HHH----HhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHH
Confidence 3456899999999864 222211 111 1122 5556789999999999999854 566 3569999999
Q ss_pred hHHHHHHhhCCCC
Q 030302 72 GIEFLRTYLNLPS 84 (179)
Q Consensus 72 GI~YLR~yLhLP~ 84 (179)
|.+.|.+|=-|-.
T Consensus 101 Gr~~l~~y~~la~ 113 (151)
T 3u1d_A 101 GIALLRAVSMYEE 113 (151)
T ss_dssp HHHHHHHTTCSTH
T ss_pred HHHHHHHhHHHhH
Confidence 9999998655543
No 74
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=88.63 E-value=0.35 Score=35.53 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=38.6
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..-.|.++++.|..+|||...- .-|-.+.+||++|.+++.+..
T Consensus 71 ~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 71 FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 477778999999999999998765 568899999999999887644
No 75
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=88.56 E-value=0.25 Score=35.83 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=34.7
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|..+++.|..+|||...- .=|..++.||++|.+++.+..
T Consensus 66 ~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 113 (149)
T 4hbl_A 66 DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVF 113 (149)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHH
Confidence 478888999999999999998764 368889999999999987654
No 76
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=88.30 E-value=0.22 Score=35.61 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=31.1
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|..+++.|..+|||+..-. -|..+.+||++|.+.+.+..
T Consensus 62 ~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 62 CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp C---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 4777789999999999999987554 58899999999999887643
No 77
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=88.27 E-value=0.36 Score=33.98 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhccccccccee-eeceeeeeeechhhHHHHHHh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRET-FAWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEq-FaWrh~Yw~LTneGI~YLR~y 79 (179)
...|...|.+.+-+ ..+|..--..-+.+|+.=.|..+++.|..+|||.-. -.=+..|..||++|.+.+.+.
T Consensus 12 ~~~vL~~l~~~~~~-t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 12 EWEVMNIIWMKKYA-SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHHHHHHSSE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc-CHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 44667777654433 222322100000115677899999999999999654 356677789999998776543
No 78
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=88.14 E-value=0.26 Score=35.57 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=37.5
Q ss_pred ccCCHHHHHHhhhccccccccee---eeceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEq---FaWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||... -.=|-.+.+||++|.+.+.+..
T Consensus 64 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 64 NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 47778899999999999999863 3467888999999999987653
No 79
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=87.88 E-value=0.19 Score=36.27 Aligned_cols=45 Identities=9% Similarity=0.267 Sum_probs=31.0
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|..+++.|..+|||...- .-|..|.+||++|.+.+.+..
T Consensus 68 ~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 68 GRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp -----CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 466667889999999999998664 567889999999999987643
No 80
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=87.77 E-value=0.32 Score=35.23 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=34.3
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHH
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~ 78 (179)
++|+.=.|.++++.|..+|||.-. +..+++||++|.+.+..
T Consensus 32 l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 32 LAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHH
Confidence 358888999999999999999765 34689999999877654
No 81
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=87.66 E-value=0.56 Score=34.36 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=38.0
Q ss_pred ccCCHHHHHHhhhcccccccceeee-----ceeeeeeechhhHHHHHHhhCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa-----Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
+|..=.|..+|+.|...|+|..... =+--||.||++|.++|.+.+..
T Consensus 39 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 90 (115)
T 4esb_A 39 FVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS 90 (115)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 4677789999999999999986531 1456889999999999987654
No 82
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=87.49 E-value=0.11 Score=48.24 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred cccCCHHHHHHhhhccccc-ccceeeeceeeeeeechhhHHHHHHhhCCCCCCc
Q 030302 35 IDVPNLQVIKLMQSFKSRE-YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIV 87 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrG-yVkEqFaWrh~Yw~LTneGI~YLR~yLhLP~eiV 87 (179)
++++--.|+.++.||.|+| +|+-.-- -.-+|.||+||.+|+. -+||+..|
T Consensus 30 ~~~~~~~v~~~~~~L~~~~~~v~~~~~-~~~~~~Lt~eg~~~~~--~G~pE~~~ 80 (508)
T 3l4g_A 30 LGMEHQAVVGAVKSLQALGEVIEAELR-STKHWELTAEGEEIAR--EGSHEARV 80 (508)
T ss_dssp ------------------------------------------------------
T ss_pred cCCCHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEECHHHHHHHH--cCCHHHHH
Confidence 3577888999999999998 7653222 3457899999999998 46676443
No 83
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=87.39 E-value=0.54 Score=31.63 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=38.7
Q ss_pred ccccCCHHHHHHhhhcccccccceeee------ceeeeeeechhhHHHHHHhhC
Q 030302 34 EIDVPNLQVIKLMQSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 34 el~VpNL~ViK~mqSLkSrGyVkEqFa------Wrh~Yw~LTneGI~YLR~yLh 81 (179)
.++|+.=.|..+++.|...|||...-. .+.++|.||++.++.+...+.
T Consensus 45 ~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 45 IFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 346888899999999999999987654 456789999998888877653
No 84
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=87.36 E-value=0.31 Score=34.88 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 65 ~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 65 GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 477888999999999999998653 367789999999999987644
No 85
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=87.21 E-value=0.37 Score=34.65 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=33.6
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHh
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~y 79 (179)
++|+.=.|.++++.|..+|||...- .+|+||++|.+.+.+.
T Consensus 41 l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 41 LKIAPSSVFEEVSHLEEKGLVKKKE----DGVWITNNGTRSINYL 81 (139)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEET----TEEEECHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHCCCEEecC----CeEEEChhHHHHHHHH
Confidence 3588889999999999999997643 4688999999876544
No 86
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=87.04 E-value=0.32 Score=35.14 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=34.1
Q ss_pred ccCCHHHHHHhhhcccccccce-----eeeceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkE-----qFaWrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|.++++.|..+|||.- .-.=|.+|.+||++|.+.+.+..
T Consensus 62 ~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 62 GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp CSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 4778889999999999999984 35578899999999999887643
No 87
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.11 E-value=0.1 Score=36.17 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=41.7
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhH
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI 73 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI 73 (179)
...+|..|.+.| +.. +- -.|. ...++|+.-.|.+.++.|...|+|...- . ||.||++|.
T Consensus 29 ~~~~r~~Il~~L-~~~-~~-~~eL----a~~l~is~~tv~~~L~~L~~~Glv~~~~--g--~y~l~~~g~ 87 (96)
T 1y0u_A 29 TNPVRRKILRML-DKG-RS-EEEI----MQTLSLSKKQLDYHLKVLEAGFCIERVG--E--RWVVTDAGK 87 (96)
T ss_dssp SCHHHHHHHHHH-HTT-CC-HHHH----HHHHTCCHHHHHHHHHHHHHTTSEEEET--T--EEEECTTTC
T ss_pred CCHHHHHHHHHH-cCC-CC-HHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEC--C--EEEECCCch
Confidence 346678899888 433 21 1121 1234688888999999999999998755 2 889999884
No 88
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=86.06 E-value=0.36 Score=34.15 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=48.5
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCccc-cCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHH
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLR 77 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~-VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR 77 (179)
+..+.+..|...|. +|-+- -.|.. ..+. |..=.|...++.|...|+|...-. =|..||.||++|.+.+.
T Consensus 22 l~~~~~~~IL~~L~-~~~~~-~~eL~----~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 22 FAGKWTLLIIFQIN-RRIIR-YGELK----RAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HTSSSHHHHHHHHT-TSCEE-HHHHH----HHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HcCccHHHHHHHHH-hCCcC-HHHHH----HHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 34456677888887 55432 22322 2344 778889999999999999986543 57899999999976443
No 89
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=85.81 E-value=0.46 Score=36.35 Aligned_cols=48 Identities=6% Similarity=0.105 Sum_probs=38.8
Q ss_pred cccCCHHHHHHhhhcccccccceeee------ceeeeeeechhhHHHHHHhhCC
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa------Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
++|..=.+..+|+.|...|||+..-. =+.-||.||++|.++|.+++.-
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~ 117 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 117 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 45777789999999999999986531 2467999999999999887653
No 90
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=85.76 E-value=0.8 Score=34.28 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=37.2
Q ss_pred cccCCHHHHHHhhhcccccccceeee----ceeeeeeechhhHHHHHHhhC
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFa----Wrh~Yw~LTneGI~YLR~yLh 81 (179)
+++..=.|.-+|+.|...|||..... =+--||.||++|.++|.+.+.
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~ 98 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEA 98 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 45666788999999999999986421 245689999999999998653
No 91
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=85.51 E-value=0.49 Score=34.12 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=32.8
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~yL 80 (179)
.|+.=.|..+++.|..+|||...- .=|-.+.+||++|.+.+.+..
T Consensus 65 ~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 65 GLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp TCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 478889999999999999998644 357889999999999887643
No 92
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=85.37 E-value=0.58 Score=36.77 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=37.5
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhhCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLNL 82 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yLhL 82 (179)
.|..=.|..+++.|..+|||...-. -|..|.+||++|.+.+.+....
T Consensus 73 ~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (207)
T 2fxa_A 73 VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEE 122 (207)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 4777889999999999999987654 7889999999999998876643
No 93
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=85.35 E-value=0.12 Score=34.92 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=42.9
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccce--eeeceeeeeeechhhH
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRE--TFAWMHYYWYLTNDGI 73 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkE--qFaWrh~Yw~LTneGI 73 (179)
+..|.++|.+.|-+ .-.|.. ..++|+.-.|-+.++.|.+.|+|.. .-..+..||.|+++.+
T Consensus 2 r~~Il~~L~~~~~~-s~~eLa----~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~~~ 64 (81)
T 2htj_A 2 KNEILEFLNRHNGG-KTAEIA----EALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGEKQ 64 (81)
T ss_dssp HHHHHHHHHHSCCC-CHHHHH----HHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSCSS
T ss_pred HHHHHHHHHHcCCC-CHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChhhh
Confidence 56889988876532 111111 1235888899999999999999983 3456788999987644
No 94
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=85.10 E-value=0.8 Score=33.54 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=48.2
Q ss_pred hhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhH-HHHHH
Q 030302 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI-EFLRT 78 (179)
Q Consensus 5 K~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI-~YLR~ 78 (179)
..+|..|...|.+..+-+ .+. -..++|+.=.|-+.++.|...|+|...-.-++.||+||+++| ++++.
T Consensus 45 ~~~rl~IL~~L~~~~~s~--~el----a~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~ 113 (122)
T 1r1t_A 45 DPNRLRLLSLLARSELCV--GDL----AQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQN 113 (122)
T ss_dssp CHHHHHHHHHHTTCCBCH--HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCH--HHH----HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 456778888886422111 111 112357888899999999999999877677889999999998 45444
No 95
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=83.71 E-value=0.91 Score=34.70 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=37.7
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHhh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 80 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~yL 80 (179)
.|..=.|..+++.|..+|||...-+ -|..|.+||++|.+.+.+..
T Consensus 68 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 68 GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4777889999999999999987654 57799999999998877544
No 96
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=83.57 E-value=1.1 Score=33.98 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=40.1
Q ss_pred cCCHHHHHHhhhcccccccceeeecee--eeeeechhhHHHHHHhhCCCCCCc
Q 030302 37 VPNLQVIKLMQSFKSREYVRETFAWMH--YYWYLTNDGIEFLRTYLNLPSEIV 87 (179)
Q Consensus 37 VpNL~ViK~mqSLkSrGyVkEqFaWrh--~Yw~LTneGI~YLR~yLhLP~eiV 87 (179)
.+.=++..+++.|...||+.+...-.. -+..||++|-++|+.....|++++
T Consensus 65 ~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~~~~l~ 117 (134)
T 3aaf_A 65 QTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSLI 117 (134)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTSCCCCE
T ss_pred CCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccCCCcee
Confidence 677788999999999999999773211 248999999999999877554443
No 97
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=82.30 E-value=1.1 Score=33.26 Aligned_cols=44 Identities=5% Similarity=0.126 Sum_probs=37.8
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~y 79 (179)
.|..=.|..+++.|..+|||.-.-+ =|-.+.+||++|.+.+.+.
T Consensus 57 ~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 57 GIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 4888899999999999999986554 6889999999999887653
No 98
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=81.82 E-value=1.2 Score=32.81 Aligned_cols=44 Identities=14% Similarity=0.023 Sum_probs=36.8
Q ss_pred ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YLR~y 79 (179)
.|..=.|..++..|..+|||...-+ =|-.+.+||++|.+.+.+.
T Consensus 62 ~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 62 MVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 4788889999999999999987766 4789999999999988753
No 99
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=81.18 E-value=0.4 Score=36.08 Aligned_cols=44 Identities=7% Similarity=0.028 Sum_probs=34.1
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~y 79 (179)
.|+.=.|.++++.|..+|||...- .-|..+.+||++|.+++.+.
T Consensus 97 ~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 143 (181)
T 2fbk_A 97 AISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHL 143 (181)
T ss_dssp SCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 467777888999999999998753 46788999999999988764
No 100
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=80.23 E-value=1.4 Score=35.71 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=40.8
Q ss_pred ccCCHHHHHHhhhcccccccceeee----c-eeeeeeechhhHHHHHHhhCCCCC
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA----W-MHYYWYLTNDGIEFLRTYLNLPSE 85 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa----W-rh~Yw~LTneGI~YLR~yLhLP~e 85 (179)
++..=+|..+|+.|...|+|...-. - .--||.||++|.+.|+++|.=|.+
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~~~ 122 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDVN 122 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSCCC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhcccC
Confidence 4667789999999999999986531 1 246899999999999999987755
No 101
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=79.93 E-value=0.93 Score=36.25 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=37.9
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHH--------------HHHhhCCCCC
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEF--------------LRTYLNLPSE 85 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~Y--------------LR~yLhLP~e 85 (179)
+.|..=.|..+++.|..+|||.-.- +.+++||++|.+. |.+.|+|+++
T Consensus 34 l~vs~~tvs~~l~~Le~~GlV~r~~---~~~v~LT~~G~~~~~~~~~~~~~~e~~l~~~lgl~~e 95 (226)
T 2qq9_A 34 LEQSGPTVSQTVARMERDGLVVVAS---DRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDIN 95 (226)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECT---TSBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HCCCHHHHHHHHHHHHHCCCEEEeC---CCCeEECHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4588888999999999999997753 4689999999763 3345588865
No 102
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.75 E-value=1.1 Score=37.14 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=47.8
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccce-eeece-----eeeeeechhhHHH
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRE-TFAWM-----HYYWYLTNDGIEF 75 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkE-qFaWr-----h~Yw~LTneGI~Y 75 (179)
-..+|..|+..|.+ |-+. -.+ + ...++|+.=.|.+.|+.|...|+|.. .-.-+ ..||.||++|+..
T Consensus 10 ~~~~R~~IL~~L~~-g~~s-~~E--L--a~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~ 81 (232)
T 2qlz_A 10 GNKVRRDLLSHLTC-MECY-FSL--L--SSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSYV 81 (232)
T ss_dssp TSHHHHHHHHHHTT-TTTC-SSS--S--CTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEEEE
T ss_pred CCHHHHHHHHHHHh-CCCC-HHH--H--HHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchhhH
Confidence 35689999999985 4321 111 1 22356788889999999999999998 44446 8899999999754
No 103
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=78.48 E-value=1.2 Score=35.48 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=48.5
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHH-------------
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIE------------- 74 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~------------- 74 (179)
..+||+..-+.+-+ ..+|.- ..++|..=.|.++++.|..+|||.-.= +.+++||++|.+
T Consensus 8 L~~I~~l~~~~~~~-~~~~lA----~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~G~~~~~~~~~~h~~~e 79 (214)
T 3hrs_A 8 LKCLYELGTRHNKI-TNKEIA----QLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDLGLKLVSDLYRKHRLIE 79 (214)
T ss_dssp HHHHHHTTSSCSCC-CHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCc-CHHHHH----HHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHHHHHHHHHHHHHHHHHH
Confidence 46788765433322 122221 134688899999999999999997653 357899999976
Q ss_pred -HHHHhhCCCCCCc
Q 030302 75 -FLRTYLNLPSEIV 87 (179)
Q Consensus 75 -YLR~yLhLP~eiV 87 (179)
||.+.|+++++.+
T Consensus 80 ~~l~~~lg~~~~e~ 93 (214)
T 3hrs_A 80 VFLVHHLGYTTEEI 93 (214)
T ss_dssp HHHHHTTCCCHHHH
T ss_pred HHHHHHhCCCHHHH
Confidence 3445678887643
No 104
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=78.42 E-value=2 Score=30.25 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=48.8
Q ss_pred hhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhH-HHHHHhh
Q 030302 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGI-EFLRTYL 80 (179)
Q Consensus 5 K~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI-~YLR~yL 80 (179)
...+..|+..|.+ +-+ .-.+. -..++|+.=.|-+.++.|...|+|...-.-|+.||+||.+.+ +.++..+
T Consensus 31 ~~~~~~il~~L~~-~~~-s~~el----a~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~ 101 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPL-PVTDL----AEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAI 101 (119)
T ss_dssp CHHHHHHHHHHHH-CCC-CHHHH----HHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-CCC-CHHHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHH
Confidence 4567788888875 311 01111 113468888999999999999999877788999999996654 6666543
No 105
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=75.67 E-value=1 Score=33.86 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee--ceeeeeeechhhHHH
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA--WMHYYWYLTNDGIEF 75 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa--Wrh~Yw~LTneGI~Y 75 (179)
+..+.+..|...|+ +|.+- -+|+ ...+.|..=.|.+.++.|...|+|...-. =+..+|.||++|.+.
T Consensus 21 l~~~w~l~IL~~L~-~g~~~-~~eL----a~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l 89 (146)
T 2f2e_A 21 IGDGWSMLIVRDAF-EGLTR-FGEF----QKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRAL 89 (146)
T ss_dssp HCSSSHHHHHHHHH-TTCCS-HHHH----HHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTT
T ss_pred hCCchHHHHHHHHH-hCCCC-HHHH----HHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHH
Confidence 34456677888887 45431 1121 11346888899999999999999986542 115788999999643
No 106
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=75.43 E-value=0.76 Score=35.69 Aligned_cols=47 Identities=4% Similarity=0.085 Sum_probs=37.8
Q ss_pred cccCCHHHHHHhhhcccccccceee------eceeeeeeechhhHHHHHHhhC
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETF------AWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqF------aWrh~Yw~LTneGI~YLR~yLh 81 (179)
++|..=.+..+|+.|...|||+... .=+.-||.||++|.+.|.+++.
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 126 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 126 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 4577788999999999999998653 1346799999999988777654
No 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=73.99 E-value=1.7 Score=35.91 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=45.7
Q ss_pred hHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhCCC
Q 030302 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP 83 (179)
Q Consensus 7 nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLhLP 83 (179)
....|.+.|.+++-+ .-+|.. ..++++.=.|.+.++.|...|||+.. =|...|.||++|.+.+..+..+|
T Consensus 153 ~~~~IL~~L~~~~~~-s~~eLA----~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~ 222 (244)
T 2wte_A 153 EEMKLLNVLYETKGT-GITELA----KMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVI 222 (244)
T ss_dssp HHHHHHHHHHHHTCB-CHHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHcCCC-CHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhccc
Confidence 345666666544432 111111 12357888899999999999999875 24567889999999888755553
No 108
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=71.85 E-value=1.9 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=33.5
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHH
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLR 77 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR 77 (179)
+.|..=.|..+++.|..+|||.-.-. -+++||++|.+.+.
T Consensus 34 l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 34 LDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAI 73 (230)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHH
Confidence 35788889999999999999987654 47899999987754
No 109
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=69.90 E-value=2.8 Score=30.66 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=33.5
Q ss_pred ccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~y 79 (179)
.|..-.|-++++.|..+|||...-. ..++||++|.+.+.+.
T Consensus 65 ~vs~~tvs~~l~~Le~~Glv~r~~~---~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 65 GVSQPTVAKMLKRLATMGLIEMIPW---RGVFLTAEGEKLAQES 105 (155)
T ss_dssp TSCHHHHHHHHHHHHHTTCEEEETT---TEEEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCEEEecC---CceEEChhHHHHHHHH
Confidence 5888889999999999999976532 4688999999876653
No 110
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=69.89 E-value=1.2 Score=35.67 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=48.7
Q ss_pred chhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee-----ceeeeeeechhhHHH
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA-----WMHYYWYLTNDGIEF 75 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa-----Wrh~Yw~LTneGI~Y 75 (179)
...+|..|...|- +|-+- -.+.. ..++|+.=.|...|+.|...|+|+..-. -+..||.||++|+.-
T Consensus 13 ~~~~rl~IL~~L~-~~~~s-~~eLa----~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~ 83 (202)
T 2p4w_A 13 GNETRRRILFLLT-KRPYF-VSELS----RELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (202)
T ss_dssp HSHHHHHHHHHHH-HSCEE-HHHHH----HHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred CCHHHHHHHHHHH-hCCCC-HHHHH----HHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHHHH
Confidence 4567889999885 44332 12211 1345888889999999999999988665 788999999999853
No 111
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=68.65 E-value=1.3 Score=31.71 Aligned_cols=48 Identities=13% Similarity=0.337 Sum_probs=35.4
Q ss_pred hHHHHHHHhhh---cccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee
Q 030302 7 NRKEICKYLFQ---EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60 (179)
Q Consensus 7 nr~~IYe~LFk---EGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa 60 (179)
....||.+|.. +|+ ..+|.. ..+++++=.|.+++++|.++|||+.+=+
T Consensus 21 ~q~~Vl~~I~~~g~~gi--~qkeLa----~~~~l~~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGI--WSRDVR----YKSNLPLTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp SHHHHHHHHHHHCTTCE--EHHHHH----HHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHcCCCCc--CHHHHH----HHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 45689999995 353 456643 1346788889999999999999995433
No 112
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=68.36 E-value=2.6 Score=34.34 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=47.3
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechh
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTne 71 (179)
.-+++|+|+|- +|++-.-+=.+ .+++.-=+|--++..|.--|.|+|.=-=+--||+|.+.
T Consensus 11 erk~~ILE~Lk-~G~~~t~~Iak-----~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s 70 (165)
T 2vxz_A 11 VRLRDILALLA-DGCKTTSLIQQ-----RLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD 70 (165)
T ss_dssp HHHHHHHHHHT-TCCEEHHHHHH-----HHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH
T ss_pred HHHHHHHHHHH-hCCccHHHHHH-----HhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH
Confidence 34679999999 99874322211 34577778888999999999999999999999999755
No 113
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=68.20 E-value=1.4 Score=29.35 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred hHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeec
Q 030302 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLT 69 (179)
Q Consensus 7 nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LT 69 (179)
.+..|.+.|-+++--+.-.|.. ..++|+-=.|-++|+.|+..|||... +.-||.|+
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA----~~lglsr~tv~~~l~~L~~~G~I~~~---~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLV----KKCQVPKKTLNQVLYRLKKEDRVSSP---SPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHH----HHHCSCHHHHHHHHHHHHHTTSEEEE---ETTEEEEC
T ss_pred HHHHHHHHHHHcCCCcCHHHHH----HHHCcCHHHHHHHHHHHHHCCcEecC---CCceEeeC
Confidence 4668999987654323333322 13468999999999999999997542 23577775
No 114
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=65.51 E-value=5.3 Score=31.55 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=51.3
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCC-CCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHh
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAK-HPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~-Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~y 79 (179)
.+...|+..|-+.|.+......++.. -..+.|..=.|-+.++.|...||+.-.-.-|.....||++|.+++...
T Consensus 7 ~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 7 DQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 34566777777766553332222110 012357888899999999999998776556889999999999887654
No 115
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=65.29 E-value=1.3 Score=30.62 Aligned_cols=44 Identities=18% Similarity=0.434 Sum_probs=33.5
Q ss_pred HHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccc
Q 030302 9 KEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVR 56 (179)
Q Consensus 9 ~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVk 56 (179)
..||+|+-..|=++--.+|.. ...|+.=.|+++|++|.++|+++
T Consensus 13 ~~lL~yIr~sGGildI~~~a~----kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSK----VYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHH----HHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHH----HhCCCHHHHHHHHHHHHHCCCee
Confidence 478999888866653334321 34699999999999999999986
No 116
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=65.03 E-value=3.2 Score=30.62 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=30.7
Q ss_pred ccCCHHHHHHhhhcccccccceeee--ceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFA--WMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFa--Wrh~Yw~LTneGI~YLR~y 79 (179)
.|..=.|..+++.|..+|||...-. =|-.+-+||++|.+.+.+-
T Consensus 63 ~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 63 GVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 3677789999999999999965433 3667889999999988764
No 117
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=64.80 E-value=4.7 Score=29.43 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=39.8
Q ss_pred hHHHHHHHhhh-cccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeee--eechhhH
Q 030302 7 NRKEICKYLFQ-EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYW--YLTNDGI 73 (179)
Q Consensus 7 nr~~IYe~LFk-EGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw--~LTneGI 73 (179)
....|..+|.+ ++-+ .-+|..--...+-+|..=.|..+++.|..+|||+-.-.-|.+.| +||.+|.
T Consensus 10 ~e~~vL~~L~~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQ-TVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHHHHTCSSCE-EHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 35578888886 3433 23343210011112566789999999999999986655554444 4788885
No 118
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=64.74 E-value=3.7 Score=31.03 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCcc-ccCCHHHHHHhhhcccccccceeee---ceeeeeeechhhHHHH
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI-DVPNLQVIKLMQSFKSREYVRETFA---WMHYYWYLTNDGIEFL 76 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel-~VpNL~ViK~mqSLkSrGyVkEqFa---Wrh~Yw~LTneGI~YL 76 (179)
|-.+-+..|...|+ +|.+ .|. -....+ .|..=.+...|+.|...|+|...-. =+..+|.||++|.+.+
T Consensus 23 lg~kW~l~IL~~L~-~g~~----rf~-eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 23 IGGKWKGILFYHMI-DGKK----RFN-EFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HCSSSHHHHHHHHT-TSCB----CHH-HHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HcCcCHHHHHHHHh-cCCc----CHH-HHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 33455667777777 5543 111 001133 4677789999999999999976642 2578999999996543
No 119
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.05 E-value=1.5 Score=32.27 Aligned_cols=50 Identities=12% Similarity=0.278 Sum_probs=35.1
Q ss_pred hHHHHHHHhhhcccE-EEeecCCCCCCCccccCCHHHHHHhhhcccccccceeee
Q 030302 7 NRKEICKYLFQEGVC-YAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60 (179)
Q Consensus 7 nr~~IYe~LFkEGV~-VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa 60 (179)
.-..||.++.+-|=. |+.+|... .++++.-.|.+++++|.+++|||++=+
T Consensus 38 ~E~lVy~~I~~aGn~GIw~kdL~~----~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 38 QEKLVYQIIEDAGNKGIWSRDVRY----KSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHH----HHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHH----HhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 445788888763321 34566442 345677789999999999999998643
No 120
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=58.97 E-value=4.8 Score=33.07 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=35.0
Q ss_pred ccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhC
Q 030302 34 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 81 (179)
Q Consensus 34 el~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLh 81 (179)
.|+|..=.|..+|+-|+++|||.-.= -+-+||++|.+++.+-..
T Consensus 39 ~LgvS~~SV~~~lkkL~e~GLV~~~~----~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 39 RLELGEGSVRTLLRKLSHLDIIRSKQ----RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHCCCEEEeC----CCeEECHHHHHHHHHHHH
Confidence 34688899999999999999996443 488999999988766544
No 121
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=58.01 E-value=11 Score=28.92 Aligned_cols=45 Identities=2% Similarity=0.110 Sum_probs=37.7
Q ss_pred ccccCCHHHHHHhhhcccccccceeeecee---------eeeeechhhHH--HHHHhh
Q 030302 34 EIDVPNLQVIKLMQSFKSREYVRETFAWMH---------YYWYLTNDGIE--FLRTYL 80 (179)
Q Consensus 34 el~VpNL~ViK~mqSLkSrGyVkEqFaWrh---------~Yw~LTneGI~--YLR~yL 80 (179)
.++|+.=.|..+|..|...|||+. -|+- -||.||++|-+ ||.++.
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~--~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~ 104 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQ--IKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLK 104 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEE--EEEECTTSTTCEEEEEEESCHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHCCCeEE--EEeecCCCCCCceeEEEEChhhhhHHHHHHHH
Confidence 346788899999999999999976 4563 89999999999 988754
No 122
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=43.80 E-value=16 Score=26.38 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=34.1
Q ss_pred hhHHHHHHHhhhcccE-EEeecCCCCCCCccccCCHHHHHHhhhccccccccee
Q 030302 6 KNRKEICKYLFQEGVC-YAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRET 58 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~-VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEq 58 (179)
.....||..|.+.+-- +.-.+.. ..++++.=.|..+++.|..+|||...
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa----~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALS----KSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHH----HHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4567899999865431 1222221 13458888999999999999999865
No 123
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=43.60 E-value=16 Score=25.33 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=27.2
Q ss_pred ccCCHHHHHHhhhccccccccee---eeceeeeeeec
Q 030302 36 DVPNLQVIKLMQSFKSREYVRET---FAWMHYYWYLT 69 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEq---FaWrh~Yw~LT 69 (179)
+++.=.|..+++.|..+|||... -..|.+|-.||
T Consensus 52 ~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~ 88 (152)
T 1ku9_A 52 KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVD 88 (152)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECC
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecc
Confidence 57888999999999999999874 34667766663
No 124
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=43.13 E-value=4.7 Score=28.28 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=41.9
Q ss_pred cchhhHHHHHHHhhhcc---cEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeech
Q 030302 3 IPEKNRKEICKYLFQEG---VCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTN 70 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEG---V~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTn 70 (179)
+..+....|.++|.+.+ -+-+ ++. -..|+|+-=.|-+.|.+|+..|+|+-+= =+--||+++.
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~-~eL----A~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~ 71 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTA-HDL----SGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCH-HHH----HHHHTCCHHHHHHHHHHHHHTTSEEEES-SSSCEEEEC-
T ss_pred cchHHHHHHHHHHHHcCCCCCcCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCeeEEeC
Confidence 44555678898888766 3311 111 1134688889999999999999997653 3457888765
No 125
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=40.26 E-value=5.9 Score=33.50 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccc-eeeeceeeeeeechhhHHHH
Q 030302 7 NRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVR-ETFAWMHYYWYLTNDGIEFL 76 (179)
Q Consensus 7 nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVk-EqFaWrh~Yw~LTneGI~YL 76 (179)
.+..|.++|..++-+ -.+|.. ..++|..-.|-..++.|..+|+|+ .. +.-+||++|.+.+
T Consensus 21 r~~~iL~~l~~~~~~-t~~eLa----~~l~vs~~Tv~r~l~~Le~~Glv~~~~-----~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 21 ERFQILRNIYWMQPI-GRRSLS----ETMGITERVLRTETDVLKQLNLIEPSK-----SGMTLTERGLEVY 81 (345)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCC-CHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEEEe-----cceEEcHHHHHHH
Confidence 345666666655533 222321 245688889999999999999997 43 3488999997544
No 126
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=38.76 E-value=4.4 Score=26.87 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=37.8
Q ss_pred hhhHHHHHHHhhhc--ccEEEeecCCCCCCCcc-----ccCCHHHHHHhhhcccccccceeee-ceeeeeee
Q 030302 5 EKNRKEICKYLFQE--GVCYAKKDYNLAKHPEI-----DVPNLQVIKLMQSFKSREYVRETFA-WMHYYWYL 68 (179)
Q Consensus 5 K~nr~~IYe~LFkE--GV~VakKD~~~p~Hpel-----~VpNL~ViK~mqSLkSrGyVkEqFa-Wrh~Yw~L 68 (179)
...|.+|.+.|.+. +-+-+ +|.. ..+ +|+--.|...|+.|...|+|...-. -...||-|
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~-~el~----~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSA-EDLY----KRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCH-HHHH----HHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCH-HHHH----HHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence 45688999998864 22221 2221 112 4666789999999999999987654 34444444
No 127
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=37.81 E-value=19 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=17.9
Q ss_pred CccchhhHHHHHHHhhhcccEEE
Q 030302 1 MIIPEKNRKEICKYLFQEGVCYA 23 (179)
Q Consensus 1 MlipK~nr~~IYe~LFkEGV~Va 23 (179)
|.||.+ .+.+-..|-+.|..+.
T Consensus 1 ~~mp~~-~~elik~L~~~G~~~~ 22 (70)
T 1whz_A 1 MWMPPR-PEEVARKLRRLGFVER 22 (70)
T ss_dssp CCCCCC-HHHHHHHHHHTTCEEE
T ss_pred CCCCCC-HHHHHHHHHHCCCEEe
Confidence 899986 4588899999998754
No 128
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.75 E-value=9.4 Score=27.35 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=42.3
Q ss_pred hhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechh
Q 030302 5 EKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (179)
Q Consensus 5 K~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTne 71 (179)
...+..|.++|.++| + .-++.- .+|+|+--.|-+.|.+|...|+|..+ .=.-==|+||.+
T Consensus 16 ~~~~~~IL~lL~~~g-~-sa~eLA----k~LgiSk~aVr~~L~~Le~eG~I~~~-~~~PP~W~~~~~ 75 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG-A-TAAQLT----RQLNMEKREVNKALYDLQRSAMVYSS-DDIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHHSSST-E-EHHHHH----HHSSSCHHHHHHHHHHHHHHTSSEEC-SSSSCEEESCC-
T ss_pred HHHHHHHHHHHHHcC-C-CHHHHH----HHHCcCHHHHHHHHHHHHHCCCEEeC-CCCCCcceeccC
Confidence 467889999999999 2 223322 24678889999999999999999775 333345666543
No 129
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=37.68 E-value=31 Score=23.87 Aligned_cols=64 Identities=6% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeecee-eeeeechhh
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMH-YYWYLTNDG 72 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh-~Yw~LTneG 72 (179)
...|...|.+.|=+ ..+|..--.+-+-++..=.|..+++.|..+|||.-.-.=|- .|+.++.++
T Consensus 12 q~~vL~~L~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~ 76 (126)
T 1sd4_A 12 EWDVMNIIWDKKSV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKED 76 (126)
T ss_dssp HHHHHHHHHHSSSE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHH
Confidence 44677777766543 23333210000012456689999999999999976554444 455455544
No 130
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=37.48 E-value=5.9 Score=30.69 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=38.0
Q ss_pred CccchhhHHHHHHHhhhcccEEEeecCCCCCCCcc----ccCCHHHHHHhhhcccccccceeee
Q 030302 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI----DVPNLQVIKLMQSFKSREYVRETFA 60 (179)
Q Consensus 1 MlipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel----~VpNL~ViK~mqSLkSrGyVkEqFa 60 (179)
|-|+++.+.+|--.++ |....+-....-.+| +||--+|-|+|+.|+..|+|..+=+
T Consensus 20 M~lS~~~~yAlr~L~~----LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG 79 (159)
T 3lwf_A 20 MKITTKGRYGLTITLE----LAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 79 (159)
T ss_dssp SCCCHHHHHHHHHHHH----HHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred eeCchHHHHHHHHHHH----HHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 7788888888877655 221112111122233 5899999999999999999987643
No 131
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=37.34 E-value=28 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=34.8
Q ss_pred ccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHH
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLR 77 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR 77 (179)
.|..=.|--+|.-|+++|++.-.=.=|--||.||+.|.+-|+
T Consensus 56 Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 56 GLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 466667888999999999988775556669999999999985
No 132
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=36.81 E-value=21 Score=23.39 Aligned_cols=61 Identities=3% Similarity=0.016 Sum_probs=35.4
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeee
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWY 67 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~ 67 (179)
..+..|.+.|.++|-+ .-+|..--.+.+-++..=.|..+++.|..+|||...=.=|.++|+
T Consensus 9 ~~e~~vL~~L~~~~~~-t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~ 69 (82)
T 1p6r_A 9 DAELEVMKVIWKHSSI-NTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVYT 69 (82)
T ss_dssp HHHHHHHHHHHTSSSE-EHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCCEEEEE
Confidence 3456788888876533 222322100000014556799999999999999765433334443
No 133
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=31.15 E-value=5.5 Score=29.89 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=33.0
Q ss_pred CccchhhHHHHHHHhh--h--cccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceee
Q 030302 1 MIIPEKNRKEICKYLF--Q--EGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETF 59 (179)
Q Consensus 1 MlipK~nr~~IYe~LF--k--EGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF 59 (179)
|-|+++.+.+|--.++ . ++-.|.-++.. ..++||--+|-|+|+.|+..|+|+.+=
T Consensus 4 M~ls~~~~yAl~~L~~La~~~~~~~~s~~~IA----~~~~i~~~~l~kil~~L~~aGlv~s~r 62 (143)
T 3t8r_A 4 MKISTKGRYGLTLMISLAKKEGQGCISLKSIA----EENNLSDLYLEQLVGPLRNAGLIRSVR 62 (143)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTSCCEEHHHHH----HHTTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cccChHHHHHHHHHHHHHhCCCCCCcCHHHHH----HHHCcCHHHHHHHHHHHHHCCEEEecC
Confidence 7778888887766544 1 11111111111 123589999999999999999998753
No 134
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=30.95 E-value=17 Score=31.14 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechh
Q 030302 9 KEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (179)
Q Consensus 9 ~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTne 71 (179)
.+||..|.+.|-+-+ .+. ...++||-=.|..+|++|..+|+|..+-++...|.....+
T Consensus 21 a~vY~~Ll~~g~~t~-~ei----a~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~ 78 (342)
T 3qph_A 21 ILTYWTLLVYGPSTA-KEI----STKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSPR 78 (342)
T ss_dssp TSCSHHHHHHHHHHH-SCC----SSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECCHH
T ss_pred HHHHHHHHHcCCCCH-HHH----HHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcCHH
Confidence 357888888776643 222 3356789999999999999999999998888777776654
No 135
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.84 E-value=35 Score=27.87 Aligned_cols=44 Identities=7% Similarity=0.079 Sum_probs=38.0
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~y 79 (179)
.|..=.|..++..|..+|||.-.- -=|-.+=+||++|.+.+.+-
T Consensus 185 ~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 185 HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 478888999999999999998765 46889999999999988754
No 136
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=27.00 E-value=74 Score=26.87 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=39.8
Q ss_pred CccchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHH-HHHHhhhcccccccceeeeceeeeeeechhhHHHHHH
Q 030302 1 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQ-VIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (179)
Q Consensus 1 MlipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~-ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~ 78 (179)
|+..|++-..+++.+-++ -|. ++|.|-+|+ ||+.|+. ++.-.|+.+=++-.-|-|+|||+
T Consensus 161 lFF~KedL~~~l~~~kkq----------~P~-~~I~V~~Le~vI~~m~~-------~~d~~~~~ivfiPs~es~e~i~~ 221 (252)
T 4ev1_A 161 LFLSKQDAQGLLGQVKPK----------HPK-ADIQVLDIDGVLQTLQD-------KNDTWLNQVVLVPSPESREYIRT 221 (252)
T ss_dssp EESSHHHHHHHHHHHTTT----------CTT-CEEEEEEHHHHHHHHHH-------CCCGGGGGEEEECCHHHHHHHHT
T ss_pred eEecHHHHHHHHHHHHHh----------CCC-CcEEEeeHHHHHHHHhc-------CcccccceEEEECCHHHHHHHHh
Confidence 345566666666655432 133 677777776 4555553 23346999999999999999995
No 137
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=26.85 E-value=42 Score=28.49 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=36.9
Q ss_pred ccCCHHHHHHhhhcccccccceee---eceeeeeeechhhHHHHHHh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 79 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqF---aWrh~Yw~LTneGI~YLR~y 79 (179)
.+..=.|..+++.|..+|||...- -=|-.+=+||++|.+-+.+-
T Consensus 431 ~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~ 477 (487)
T 1hsj_A 431 EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 477 (487)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHH
Confidence 477788999999999999997754 36889999999999877653
No 138
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.44 E-value=9.6 Score=27.84 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=34.9
Q ss_pred hhhHHHHHHHhhhcccEEEeecCCC---CCCCccccCCHHHHHHhhhcccccccceeee
Q 030302 5 EKNRKEICKYLFQEGVCYAKKDYNL---AKHPEIDVPNLQVIKLMQSFKSREYVRETFA 60 (179)
Q Consensus 5 K~nr~~IYe~LFkEGV~VakKD~~~---p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFa 60 (179)
.+.|.+|++.|.+..--+.-.|... ...| +|.--.|...|+.|...|+|.+.-.
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~--~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGE--NIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTC--CCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC--CCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 5789999999986432222222210 1112 2455579999999999999988653
No 139
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=22.75 E-value=36 Score=24.67 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=39.8
Q ss_pred HHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeech
Q 030302 8 RKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTN 70 (179)
Q Consensus 8 r~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTn 70 (179)
...|.+.|-+.|-=|--.|+- ..+.|+.=.|-|+|..||..|.|... .=.||.|+.
T Consensus 21 eekVLe~LkeaG~PlkageIa----e~~GvdKKeVdKaik~LKkEgkI~SP---kRCyw~~~~ 76 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLV----KECQAPKRELNQVLYRMKKELKVSLT---SPATWCLGG 76 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHH----HHHTSCHHHHHHHHHHHHHTTSEEEE---ETTEEEESS
T ss_pred HHHHHHHHHHcCCCCCHHHHH----HHHCCCHHHHHHHHHHHHHcCCccCC---CCceeeCCC
Confidence 557888887766544333322 12359999999999999999997554 667898874
No 140
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=22.65 E-value=13 Score=31.39 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=37.4
Q ss_pred cchhhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccce
Q 030302 3 IPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRE 57 (179)
Q Consensus 3 ipK~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkE 57 (179)
|-..|+..|++.|+++|-+ ...|.. ..+.+..-.|.++++.|.+.|+|+|
T Consensus 13 ~r~~n~~~il~~l~~~~~~-sr~~la----~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 13 IKQTNAGAVYRLIDQLGPV-SRIDLS----RLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHHHHHSSCSC-CHHHHH----HHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHhHHHHHHHHHHHcCCc-CHHHHH----HHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4467889999999987764 233322 1234777889999999999999988
No 141
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=21.39 E-value=55 Score=25.97 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=30.7
Q ss_pred cccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHH
Q 030302 35 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFL 76 (179)
Q Consensus 35 l~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YL 76 (179)
++++.=.|..+|++|...|||... +.-.|.|+...++.-
T Consensus 33 ~gl~~stv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~~~l~ 71 (249)
T 1mkm_A 33 FNMSVSNAYKYMVVLEEKGFVLRK---KDKRYVPGYKLIEYG 71 (249)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEC---TTSCEEECTHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHCCcEEEC---CCCcEEECHHHHHHH
Confidence 358899999999999999999876 444668888766543
No 142
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.95 E-value=11 Score=28.01 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=34.9
Q ss_pred chhhHHHHHHHhhhcccEEEeecCC--C-CCCCccccCCHHHHHHhhhcccccccceee
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYN--L-AKHPEIDVPNLQVIKLMQSFKSREYVRETF 59 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~--~-p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF 59 (179)
..+.|.+|++.|.+..--+.-.|.. + ..+| +|.---|...|+.|...|+|.+.-
T Consensus 12 ~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~--~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 12 ATRQRAAVSAALQEVEEFRSAQELHDMLKHKGD--AVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999998643222222221 0 1122 244457999999999999998854
No 143
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A 4aso_A 4ass_A
Probab=20.61 E-value=97 Score=23.42 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=38.2
Q ss_pred ccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHH
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 78 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~ 78 (179)
.+..-.|...+.|+.--||+.|+-.-|.--|+|.+-|++-...
T Consensus 71 qlskptvfatvnsfycagyidetrvgrskiytlsdlgveivec 113 (124)
T 3m8e_A 71 QLSKPTVFATVNSFYCAGYIDETRVGRSKIYTLSDLGVEIVEC 113 (124)
T ss_dssp SSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHT
T ss_pred HhcCCceEEEeeeeeeeeecchhhcchheeEehhhcchHHHHH
Confidence 3567788999999999999999999999999999999987654
No 144
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=20.60 E-value=43 Score=26.52 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=29.8
Q ss_pred ceeeeceeeeeeechhhHHHHHHhhCCCCCCcccccc
Q 030302 56 RETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLK 92 (179)
Q Consensus 56 kEqFaWrh~Yw~LTneGI~YLR~yLhLP~eiVPaTlk 92 (179)
.+.|.|=|++- .|.+=+++|.+.++|++.++=..+.
T Consensus 39 ~~~~~Wi~l~~-p~~~e~~~l~~~~~l~~l~~ed~~~ 74 (264)
T 3nvo_A 39 SQHPCWLHLNY-THPDSARWLASTPLLPNNVRDALAG 74 (264)
T ss_dssp TTSCEEEEEET-TSHHHHHHHHHCTTSCTTTHHHHTT
T ss_pred CCCCEEEEeCC-CCHHHHHHHHhccCCCHHHHHHHhC
Confidence 45689999876 8999999999999999877765554
No 145
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.37 E-value=15 Score=26.21 Aligned_cols=35 Identities=9% Similarity=0.138 Sum_probs=25.0
Q ss_pred ccCCHHHHHHhhhcccccccceeeeceeeeeeechh
Q 030302 36 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTND 71 (179)
Q Consensus 36 ~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTne 71 (179)
+||--+|-++|+.|+..|||..+=. +.-.|.|+..
T Consensus 37 ~i~~~~v~~il~~L~~~Glv~~~~g-~~ggy~L~~~ 71 (129)
T 2y75_A 37 NLSEHYLEQLVSPLRNAGLVKSIRG-AYGGYVLGSE 71 (129)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CcCHHHHHHHHHHHHHCCceEecCC-CCCceEeCCC
Confidence 5899999999999999999976532 3344556543
No 146
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.05 E-value=11 Score=28.26 Aligned_cols=53 Identities=8% Similarity=0.008 Sum_probs=34.4
Q ss_pred chhhHHHHHHHhhhcccEEEeecCC---CCCCCccccCCHHHHHHhhhcccccccceee
Q 030302 4 PEKNRKEICKYLFQEGVCYAKKDYN---LAKHPEIDVPNLQVIKLMQSFKSREYVRETF 59 (179)
Q Consensus 4 pK~nr~~IYe~LFkEGV~VakKD~~---~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqF 59 (179)
..+.|.+|++.|.+.+-+ .-.|.. ....| +|.---|...|..|...|+|.+.-
T Consensus 17 ~T~qR~~Il~~l~~~~h~-ta~ei~~~l~~~~~--~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 17 LTPQRQLVLEAVDTLEHA-TPDDILGEVRKTAS--GINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp CCHHHHHHHHHHHHHSSB-CHHHHHHHHHTTCT--TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred cCHHHHHHHHHHHhcCCC-CHHHHHHHHHhhCC--CCCHhHHHHHHHHHHHCCcEEEEE
Confidence 357899999999865422 111111 01122 244457999999999999998864
No 147
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=20.04 E-value=2.1e+02 Score=20.35 Aligned_cols=77 Identities=19% Similarity=0.118 Sum_probs=47.0
Q ss_pred hhHHHHHHHhhhcccEEEeecCCCCCCCccccCCHHHHHHhhhcccccccceeeeceeeeeeechhhHHHHHHhhCCCCC
Q 030302 6 KNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSE 85 (179)
Q Consensus 6 ~nr~~IYe~LFkEGV~VakKD~~~p~Hpel~VpNL~ViK~mqSLkSrGyVkEqFaWrh~Yw~LTneGI~YLR~yLhLP~e 85 (179)
+--..|++.|-..|.++........... .......-...+.|+.-||| + .....+.-|+.+-++++++.++.+.+
T Consensus 82 ~~l~~~~r~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGfi-~--~~~~~~~~~~~~~~~~~~~~~g~~~~ 156 (176)
T 2ld4_A 82 EILAEIARILRPGGCLFLKEPVETAVDN--NSKVKTASKLCSALTLSGLV-E--VKELQREPLTPEEVQSVREHLGHESD 156 (176)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEESSSCS--SSSSCCHHHHHHHHHHTTCE-E--EEEEEEECCCHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHCCCCEEEEEEccccccccc--ccccCCHHHHHHHHHHCCCc-E--eecCcccCCCHHHHHHHHHHhcccCC
Confidence 4456788889889999884221110000 01111233455667778993 3 22244567899999999999998876
Q ss_pred Cc
Q 030302 86 IV 87 (179)
Q Consensus 86 iV 87 (179)
-+
T Consensus 157 ~~ 158 (176)
T 2ld4_A 157 NL 158 (176)
T ss_dssp SE
T ss_pred ce
Confidence 33
Done!