Query 030303
Match_columns 179
No_of_seqs 129 out of 252
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 18:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fjk_A Cardiac phospholamban; 19.4 43 0.0015 22.5 1.3 14 14-27 39-52 (52)
2 2nr9_A Protein GLPG homolog; i 17.6 40 0.0014 26.1 1.0 27 1-29 1-27 (196)
3 1rz2_A Conserved hypothetical 13.5 40 0.0014 27.4 0.0 25 5-29 5-29 (254)
4 3arc_L Photosystem II reaction 12.7 35 0.0012 21.7 -0.5 15 15-29 19-33 (37)
5 3lqv_P Splicing factor 3B subu 6.9 28 0.00096 22.4 -2.6 22 138-161 15-38 (39)
6 3j1r_A Archaeal adhesion filam 6.6 2.9E+02 0.01 16.2 1.9 14 10-23 3-16 (26)
7 2lbo_A Microneme protein 3; ap 6.3 2.4E+02 0.0082 21.7 1.9 46 107-157 62-121 (123)
8 2ww9_C Protein transport prote 6.0 2.3E+02 0.0077 20.7 1.5 15 12-26 64-78 (87)
9 2wwb_C SEC61BETA, protein tran 5.8 2.1E+02 0.007 21.3 1.2 15 12-26 73-87 (96)
10 2d9k_A FLN29 gene product; zin 5.7 1.7E+02 0.0057 18.8 0.6 15 138-152 7-21 (75)
No 1
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=19.40 E-value=43 Score=22.48 Aligned_cols=14 Identities=43% Similarity=0.883 Sum_probs=8.7
Q ss_pred HHHHHHHhhhheee
Q 030303 14 ALLLLLLTVVVFLL 27 (179)
Q Consensus 14 ~l~~lli~vt~~l~ 27 (179)
.+.+||||+.+.|+
T Consensus 39 licllli~iivmll 52 (52)
T 1fjk_A 39 LIFLLLICIIVMLL 52 (52)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 34566777776653
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=17.60 E-value=40 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=16.3
Q ss_pred CcccccccchHHHHHHHHHHhhhheeeec
Q 030303 1 MDFITHRKYPFIVALLLLLLTVVVFLLSS 29 (179)
Q Consensus 1 ~~~~~~rk~~~i~~l~~lli~vt~~l~~~ 29 (179)
|+=++.|+.| +|..+++++|.+|++..
T Consensus 1 ~~~~~~~~~p--vt~~li~~~v~vfll~~ 27 (196)
T 2nr9_A 1 MENFLAQQGK--ITLILTALCVLIYIAQQ 27 (196)
T ss_dssp ---CCTTSCH--HHHHHHHHHHHHHHHHH
T ss_pred CCcccccccc--HHHHHHHHHHHHHHHHH
Confidence 4557788888 45566666777766654
No 3
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, P structure initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=13.54 E-value=40 Score=27.42 Aligned_cols=25 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred ccccchHHHHHHHHHHhhhheeeec
Q 030303 5 THRKYPFIVALLLLLLTVVVFLLSS 29 (179)
Q Consensus 5 ~~rk~~~i~~l~~lli~vt~~l~~~ 29 (179)
|.||+-=|+..++++|++.+||++-
T Consensus 5 ~~~~mkk~i~~lli~i~l~~~l~~~ 29 (254)
T 1rz2_A 5 KERKKKIFFQRILTVVFLGTFFYSV 29 (254)
T ss_dssp -------------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666654
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=12.67 E-value=35 Score=21.71 Aligned_cols=15 Identities=53% Similarity=0.684 Sum_probs=9.4
Q ss_pred HHHHHHhhhheeeec
Q 030303 15 LLLLLLTVVVFLLSS 29 (179)
Q Consensus 15 l~~lli~vt~~l~~~ 29 (179)
+-+|||.|+..||+|
T Consensus 19 ~GLLlifvlavlFss 33 (37)
T 3arc_L 19 LGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 345667777767664
No 5
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=6.85 E-value=28 Score=22.36 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=15.9
Q ss_pred hhhhccCC--CCCCccccCCCCCCCC
Q 030303 138 EHRERHCP--SPSPRCLAPLPVGYKL 161 (179)
Q Consensus 138 ehRERHCP--eerl~CLVPpP~GYK~ 161 (179)
+.-||.=| +|-+.-+.| .||||
T Consensus 15 ei~~RNrpltDEeLD~mLP--~GYkI 38 (39)
T 3lqv_P 15 EIDERNRPLSDEELDAMFP--EGYKV 38 (39)
T ss_dssp HHHHTTCCCCHHHHHHTCC--SSEEE
T ss_pred cchhhcCCCCHHHHHHhCC--CCccc
Confidence 44567777 667888888 59986
No 6
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=6.59 E-value=2.9e+02 Score=16.22 Aligned_cols=14 Identities=50% Similarity=0.906 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHhhh
Q 030303 10 PFIVALLLLLLTVV 23 (179)
Q Consensus 10 ~~i~~l~~lli~vt 23 (179)
|.+-++++.+|+|.
T Consensus 3 piVA~~lLIviav~ 16 (26)
T 3j1r_A 3 PVIATLLLILIAVA 16 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55666666666653
No 7
>2lbo_A Microneme protein 3; apicomplexan, protozoa, cell adhesion, MICR microneme adhesive repeat; NMR {Eimeria tenella}
Probab=6.27 E-value=2.4e+02 Score=21.71 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=28.7
Q ss_pred cccCCCCCCCCcccccChHH-----------HHHhCCccccchhhhccCC---CCCCccccCCCC
Q 030303 107 WDVCTGPMAVDYIPCLDNVE-----------AVKKLPSIRHMEHRERHCP---SPSPRCLAPLPV 157 (179)
Q Consensus 107 ~~~C~~~~~~DYiPClD~~r-----------aik~l~s~~~~ehRERHCP---eerl~CLVPpP~ 157 (179)
-..|-. .--++|||..... .|..+ --+..++||+ |+...=.||||.
T Consensus 62 ~~~CvD-dCGn~~~C~G~v~~~st~~~Tr~~~L~~~----I~~~~~~~Csp~~~~~~~~~~~~~~ 121 (123)
T 2lbo_A 62 GDGCVD-DCGSMTSCRGSVSGPSTSHLTRPSELQAV----IDSDKSNYCTDKSEQQPSQATPPPE 121 (123)
T ss_dssp CTTCCC-SSSSCCCCSCEECSCCCSEEECHHHHHHH----HHHHTTTSCCSCCCSSCCSSCCCSS
T ss_pred cCcccc-cCCCccccCCCCCCCCCceecchHHHHHH----HHhhhhccCCchhhcCcccCCCCCC
Confidence 356765 4669999987632 22110 1145899999 555666777774
No 8
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=5.97 E-value=2.3e+02 Score=20.73 Aligned_cols=15 Identities=20% Similarity=0.261 Sum_probs=8.7
Q ss_pred HHHHHHHHHhhhhee
Q 030303 12 IVALLLLLLTVVVFL 26 (179)
Q Consensus 12 i~~l~~lli~vt~~l 26 (179)
++++++.+|.++|+|
T Consensus 64 VLv~sl~FIa~VilL 78 (87)
T 2ww9_C 64 VLFLSVGFIFSVIAL 78 (87)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred ehhhHHHHHHHHHHH
Confidence 445556666666655
No 9
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=5.78 E-value=2.1e+02 Score=21.28 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhee
Q 030303 12 IVALLLLLLTVVVFL 26 (179)
Q Consensus 12 i~~l~~lli~vt~~l 26 (179)
++++.+++|.++|+|
T Consensus 73 VLv~sl~Fi~~Vi~L 87 (96)
T 2wwb_C 73 VLVMSLLFIASVFML 87 (96)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHH
Confidence 455666666666655
No 10
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.74 E-value=1.7e+02 Score=18.82 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=9.8
Q ss_pred hhhhccCCCCCCccc
Q 030303 138 EHRERHCPSPSPRCL 152 (179)
Q Consensus 138 ehRERHCPeerl~CL 152 (179)
.|.+.|||++...|-
T Consensus 7 ~H~~~~c~~r~~~C~ 21 (75)
T 2d9k_A 7 GHEETECPLRLAVCQ 21 (75)
T ss_dssp CCCCCCCCCCCEECS
T ss_pred hhCcccCCCcccCCc
Confidence 355558887776664
Done!