Query 030303
Match_columns 179
No_of_seqs 129 out of 252
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 18:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030303.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030303hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 10.4 30 0.0022 20.4 0.2 15 15-29 19-33 (37)
2 d2nr9a1 f.51.1.1 (A:4-192) Glp 6.5 71 0.0052 22.4 0.9 23 6-30 3-25 (189)
3 d1q90n_ f.23.27.1 (N:) PetN su 6.3 1.4E+02 0.01 16.7 1.9 15 10-24 3-17 (31)
4 d1oi1a1 b.34.9.3 (A:33-135) Sc 5.4 92 0.0067 20.7 0.9 9 151-160 95-103 (103)
5 d1x38a2 c.23.11.1 (A:389-602) 4.4 1.3E+02 0.0094 21.2 1.1 15 156-171 175-189 (214)
6 d1td4a_ b.85.2.1 (A:) Head dec 4.3 1.1E+02 0.0077 21.5 0.5 16 163-178 77-92 (103)
7 d2gova1 d.60.1.4 (A:7-190) Hem 4.1 1.2E+02 0.0085 21.5 0.6 18 157-174 164-181 (184)
8 d1oz2a3 b.34.9.3 (A:422-527) L 3.9 1.5E+02 0.011 19.7 1.1 11 153-163 93-103 (106)
9 d1v54g_ f.23.2.1 (G:) Mitochon 3.3 1.6E+02 0.012 19.5 0.8 18 7-24 17-34 (84)
10 d1lpba2 g.3.10.1 (A:45-90) (Pr 3.3 1.3E+02 0.0097 18.2 0.3 11 143-153 16-27 (46)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.43 E-value=30 Score=20.43 Aligned_cols=15 Identities=53% Similarity=0.684 Sum_probs=9.4
Q ss_pred HHHHHHhhhheeeec
Q 030303 15 LLLLLLTVVVFLLSS 29 (179)
Q Consensus 15 l~~lli~vt~~l~~~ 29 (179)
+-+|||+|+-.||+|
T Consensus 19 ~GlLlifvl~vLFss 33 (37)
T d2axtl1 19 LGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777666654
No 2
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=6.51 E-value=71 Score=22.35 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=15.6
Q ss_pred cccchHHHHHHHHHHhhhheeeecC
Q 030303 6 HRKYPFIVALLLLLLTVVVFLLSST 30 (179)
Q Consensus 6 ~rk~~~i~~l~~lli~vt~~l~~~~ 30 (179)
+|+-| +|++++++|+.++++..-
T Consensus 3 ~~~~p--vt~~i~~~~~~v~~~~~~ 25 (189)
T d2nr9a1 3 AQQGK--ITLILTALCVLIYIAQQL 25 (189)
T ss_dssp TTSCH--HHHHHHHHHHHHHHHHHT
T ss_pred CCcch--HHHHHHHHHHHHHHHHHH
Confidence 45565 677777778777766554
No 3
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.31 E-value=1.4e+02 Score=16.69 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHhhhh
Q 030303 10 PFIVALLLLLLTVVV 24 (179)
Q Consensus 10 ~~i~~l~~lli~vt~ 24 (179)
|||+.+----|++||
T Consensus 3 p~iv~~awaa~~atf 17 (31)
T d1q90n_ 3 PAIVQIGWAATCVMF 17 (31)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cEEEEhHHHHHHHhh
Confidence 778877777777765
No 4
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.40 E-value=92 Score=20.71 Aligned_cols=9 Identities=44% Similarity=0.936 Sum_probs=6.2
Q ss_pred cccCCCCCCC
Q 030303 151 CLAPLPVGYK 160 (179)
Q Consensus 151 CLVPpP~GYK 160 (179)
-|. ||+|||
T Consensus 95 ~L~-pP~gy~ 103 (103)
T d1oi1a1 95 LLQ-PPLGYQ 103 (103)
T ss_dssp CCC-CCTTCC
T ss_pred ccC-CcCCCC
Confidence 444 678997
No 5
>d1x38a2 c.23.11.1 (A:389-602) Beta-D-glucan exohydrolase, C-terminal domain {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=4.40 E-value=1.3e+02 Score=21.17 Aligned_cols=15 Identities=47% Similarity=0.702 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCccc
Q 030303 156 PVGYKLPVLWPKSKDM 171 (179)
Q Consensus 156 P~GYK~PIrWPkSRD~ 171 (179)
|.| |.|+-||+|-..
T Consensus 175 PSG-KLP~T~p~~~~~ 189 (214)
T d1x38a2 175 FTG-RLPRTWFKSVDQ 189 (214)
T ss_dssp CCC-CCSSCBCSCGGG
T ss_pred CCc-cCCccccCCccc
Confidence 666 889999998554
No 6
>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
Probab=4.29 E-value=1.1e+02 Score=21.46 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=11.8
Q ss_pred CCCCCCccccccCCCC
Q 030303 163 VLWPKSKDMVRLFDTF 178 (179)
Q Consensus 163 IrWPkSRD~IWyaNv~ 178 (179)
+.||+|-|++=..|.|
T Consensus 77 v~WPesvd~~kK~~AF 92 (103)
T d1td4a_ 77 IHWPESVDEHKKANAF 92 (103)
T ss_dssp SCCCTTCCHHHHHTTT
T ss_pred ecCchhHHHHHHhhhh
Confidence 6788888877666655
No 7
>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.06 E-value=1.2e+02 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCcccccc
Q 030303 157 VGYKLPVLWPKSKDMVRL 174 (179)
Q Consensus 157 ~GYK~PIrWPkSRD~IWy 174 (179)
.||--|++.-.-|.+||+
T Consensus 164 a~Yd~P~~p~~R~NEVw~ 181 (184)
T d2gova1 164 AGYDPPMKPYGRRNEVWL 181 (184)
T ss_dssp EESSCCSSSSCCEEEEEE
T ss_pred EEeCCCCCCCCcceeEEE
Confidence 479999884456889997
No 8
>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.90 E-value=1.5e+02 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=7.9
Q ss_pred cCCCCCCCCCC
Q 030303 153 APLPVGYKLPV 163 (179)
Q Consensus 153 VPpP~GYK~PI 163 (179)
.=+|+||+-|-
T Consensus 93 L~pP~g~~~~~ 103 (106)
T d1oz2a3 93 LQPPLGPREPS 103 (106)
T ss_dssp CBCCCCTTCTT
T ss_pred ccCcCCCCCcC
Confidence 45689998763
No 9
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.34 E-value=1.6e+02 Score=19.46 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=12.0
Q ss_pred ccchHHHHHHHHHHhhhh
Q 030303 7 RKYPFIVALLLLLLTVVV 24 (179)
Q Consensus 7 rk~~~i~~l~~lli~vt~ 24 (179)
||+.|.+++-++++|+.-
T Consensus 17 kkis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 17 RFLTFGLALPSVALCTLN 34 (84)
T ss_dssp HHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577777777766666543
No 10
>d1lpba2 g.3.10.1 (A:45-90) (Pro)colipase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.29 E-value=1.3e+02 Score=18.17 Aligned_cols=11 Identities=27% Similarity=0.791 Sum_probs=8.9
Q ss_pred cCC-CCCCcccc
Q 030303 143 HCP-SPSPRCLA 153 (179)
Q Consensus 143 HCP-eerl~CLV 153 (179)
.|| |+.+.|-+
T Consensus 16 kCPCErGLtCe~ 27 (46)
T d1lpba2 16 KCPCERGLTCEG 27 (46)
T ss_dssp SCCBCTTEEEES
T ss_pred eCccccCceecc
Confidence 799 88888854
Done!