Query 030304
Match_columns 179
No_of_seqs 148 out of 441
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wff_A Riken cDNA 2810002D23 p 100.0 8.3E-30 2.9E-34 186.6 1.3 62 113-174 21-83 (85)
2 1wfh_A Zinc finger (AN1-like) 99.9 4.7E-27 1.6E-31 163.9 0.7 54 112-165 10-63 (64)
3 1wg2_A Zinc finger (AN1-like) 99.9 1.1E-26 3.8E-31 162.0 1.4 54 111-164 9-62 (64)
4 1wfl_A Zinc finger protein 216 99.9 2E-25 6.9E-30 159.5 4.3 52 112-163 20-71 (74)
5 1wfp_A Zinc finger (AN1-like) 99.9 1.7E-25 5.7E-30 159.9 1.3 54 111-164 19-72 (74)
6 1x4w_A Hypothetical protein FL 99.9 8.8E-26 3E-30 158.8 -0.7 55 110-164 8-65 (67)
7 2kzy_A ZNF216-A20, zfand5 prot 99.8 1.3E-19 4.3E-24 125.5 5.0 46 8-57 2-47 (62)
8 2c7n_A Rabex-5, GEF 1, RAB gua 99.7 8.4E-19 2.9E-23 124.8 3.5 40 14-53 7-46 (74)
9 3oj3_I Tumor necrosis factor a 99.6 2.7E-16 9.1E-21 103.8 3.4 29 23-51 18-47 (49)
10 1wfe_A Riken cDNA 2310008M20 p 99.3 4.7E-13 1.6E-17 97.9 2.3 59 113-179 21-82 (86)
11 1x4v_A Hypothetical protein LO 99.3 1.3E-12 4.4E-17 90.7 2.3 40 113-153 8-50 (63)
12 1wys_A Riken cDNA 2310008M20 p 99.2 7.7E-12 2.6E-16 89.5 2.8 41 116-157 13-56 (75)
13 2eqe_A Tumor necrosis factor, 97.8 1E-05 3.4E-10 52.8 3.0 30 22-51 14-44 (48)
14 2yw8_A RUN and FYVE domain-con 93.0 0.053 1.8E-06 38.1 2.4 28 117-144 19-49 (82)
15 1vfy_A Phosphatidylinositol-3- 92.6 0.046 1.6E-06 37.6 1.7 27 118-144 12-41 (73)
16 1wfk_A Zinc finger, FYVE domai 92.4 0.089 3E-06 37.6 3.1 28 117-144 9-39 (88)
17 1joc_A EEA1, early endosomal a 92.3 0.059 2E-06 40.8 2.1 28 117-144 69-99 (125)
18 1x4u_A Zinc finger, FYVE domai 91.7 0.11 3.8E-06 36.4 2.9 29 116-144 13-44 (84)
19 1z2q_A LM5-1; membrane protein 91.6 0.1 3.5E-06 36.7 2.5 29 116-144 20-51 (84)
20 3t7l_A Zinc finger FYVE domain 90.2 0.13 4.5E-06 36.7 2.1 28 116-143 19-49 (90)
21 1dvp_A HRS, hepatocyte growth 90.1 0.12 4.2E-06 41.9 2.1 28 117-144 161-191 (220)
22 3zyq_A Hepatocyte growth facto 89.3 0.2 6.8E-06 41.1 2.8 28 117-144 164-194 (226)
23 1y02_A CARP2, FYVE-ring finger 87.6 0.22 7.4E-06 37.8 1.8 41 117-157 19-65 (120)
24 2vrw_B P95VAV, VAV1, proto-onc 85.0 0.49 1.7E-05 40.9 2.8 41 115-157 355-400 (406)
25 2eqf_A Tumor necrosis factor, 79.8 0.97 3.3E-05 28.8 2.0 24 25-48 12-35 (46)
26 4b6d_A RAC GTPase-activating p 78.3 0.74 2.5E-05 30.7 1.2 23 116-138 18-43 (61)
27 3mpx_A FYVE, rhogef and PH dom 77.3 0.47 1.6E-05 41.1 0.0 28 117-144 375-405 (434)
28 3c5k_A HD6, histone deacetylas 69.8 2 6.9E-05 31.7 1.8 30 117-150 24-54 (109)
29 2eqg_A Tumor necrosis factor, 69.5 2.8 9.6E-05 27.0 2.2 27 24-50 12-39 (49)
30 1ptq_A Protein kinase C delta 63.5 4.1 0.00014 25.0 2.1 24 116-139 10-37 (50)
31 1r79_A Diacylglycerol kinase, 62.7 4.3 0.00015 28.8 2.3 23 117-139 38-65 (84)
32 1z60_A TFIIH basal transcripti 62.5 3.1 0.00011 27.8 1.4 35 119-153 17-56 (59)
33 2enz_A NPKC-theta, protein kin 62.5 8.6 0.00029 25.1 3.7 25 116-140 22-50 (65)
34 3h0g_L DNA-directed RNA polyme 61.9 3.8 0.00013 27.9 1.8 25 115-139 19-47 (63)
35 1kbe_A Kinase suppressor of RA 61.0 3.1 0.00011 26.6 1.2 22 118-140 15-37 (49)
36 2gmg_A Hypothetical protein PF 58.1 4.1 0.00014 30.3 1.6 26 126-153 62-88 (105)
37 2yuu_A NPKC-delta, protein kin 57.8 5.5 0.00019 27.4 2.2 25 116-140 27-55 (83)
38 1wd2_A Ariadne-1 protein homol 57.4 5.4 0.00018 26.3 2.0 29 116-144 5-40 (60)
39 2fnf_X Putative RAS effector N 56.5 5.8 0.0002 26.9 2.1 25 115-139 33-58 (72)
40 1ef4_A Subunit N, DNA-directed 56.4 3.1 0.00011 27.7 0.6 13 117-129 3-15 (55)
41 3ky9_A Proto-oncogene VAV; cal 54.5 6 0.00021 36.0 2.4 39 115-155 527-570 (587)
42 1twf_J DNA-directed RNA polyme 54.5 4.2 0.00014 28.3 1.0 14 116-129 3-16 (70)
43 3uej_A NPKC-delta, protein kin 53.1 7.5 0.00026 25.4 2.1 24 116-139 19-46 (65)
44 1rfh_A RAS association (ralgds 52.0 5.3 0.00018 25.9 1.2 25 115-139 20-45 (59)
45 2co8_A NEDD9 interacting prote 51.0 11 0.00036 25.4 2.7 29 118-146 43-73 (82)
46 1faq_A RAF-1; transferase, ser 50.9 5.4 0.00018 24.7 1.1 24 116-140 13-37 (52)
47 2ysj_A Tripartite motif-contai 47.3 23 0.00077 22.0 3.7 26 117-143 20-45 (63)
48 4ayb_N DNA-directed RNA polyme 46.8 5.4 0.00018 27.5 0.6 12 117-128 4-15 (66)
49 1y8f_A UNC-13 homolog A, MUNC1 46.1 11 0.00038 24.7 2.1 24 116-139 23-50 (66)
50 2ysl_A Tripartite motif-contai 45.9 23 0.0008 22.4 3.7 27 116-143 19-45 (73)
51 1x68_A FHL5 protein; four-and- 43.5 13 0.00043 24.4 2.1 29 118-146 36-64 (76)
52 2eli_A Protein kinase C alpha 43.4 20 0.00067 24.7 3.2 42 116-157 27-72 (85)
53 2d8t_A Dactylidin, ring finger 43.1 20 0.00069 23.0 3.0 46 116-162 14-62 (71)
54 3f6q_B LIM and senescent cell 42.3 6.9 0.00024 24.9 0.6 27 118-144 40-66 (72)
55 2enn_A NPKC-theta, protein kin 41.9 9.4 0.00032 25.9 1.2 26 115-140 32-61 (77)
56 2lce_A B-cell lymphoma 6 prote 40.3 19 0.00063 22.5 2.5 27 116-142 16-57 (74)
57 2d8x_A Protein pinch; LIM doma 40.3 8.8 0.0003 24.6 0.9 27 118-144 32-58 (70)
58 2ecj_A Tripartite motif-contai 36.8 40 0.0014 20.2 3.5 26 117-143 15-40 (58)
59 4gne_A Histone-lysine N-methyl 35.8 18 0.00061 26.6 2.0 27 118-147 59-86 (107)
60 1x64_A Alpha-actinin-2 associa 35.4 11 0.00038 25.5 0.8 10 118-127 26-35 (89)
61 1nyp_A Pinch protein; LIM doma 35.3 12 0.0004 23.7 0.8 27 118-144 32-58 (66)
62 3j21_g 50S ribosomal protein L 35.3 12 0.0004 24.4 0.8 24 116-139 13-37 (51)
63 1e0f_I Haemadin, factor IIA; c 35.2 20 0.0007 23.3 2.0 30 128-157 13-42 (57)
64 1x61_A Thyroid receptor intera 34.8 12 0.00041 24.0 0.9 26 118-143 34-59 (72)
65 4gzn_C ZFP-57, zinc finger pro 34.2 12 0.00042 23.8 0.8 28 116-143 3-45 (60)
66 1x4l_A Skeletal muscle LIM-pro 34.0 13 0.00043 24.0 0.8 27 118-144 36-62 (72)
67 2ecv_A Tripartite motif-contai 33.8 57 0.002 20.8 4.2 26 117-143 19-44 (85)
68 1x4k_A Skeletal muscle LIM-pro 32.1 15 0.0005 23.5 0.9 27 118-144 34-60 (72)
69 2ehe_A Four and A half LIM dom 32.0 25 0.00084 23.1 2.1 28 118-145 44-71 (82)
70 2kwq_A Protein MCM10 homolog; 31.6 16 0.00056 26.4 1.2 20 131-150 48-67 (92)
71 1g47_A Pinch protein; LIM doma 31.3 13 0.00044 24.1 0.5 25 119-143 41-65 (77)
72 2elq_A Zinc finger protein 406 31.2 19 0.00066 18.9 1.2 13 130-142 8-21 (36)
73 2ct2_A Tripartite motif protei 30.3 47 0.0016 21.6 3.3 27 117-143 15-44 (88)
74 2row_A RHO-associated protein 30.1 16 0.00054 25.8 0.8 42 115-156 33-83 (84)
75 1jm7_B BARD1, BRCA1-associated 30.0 23 0.0008 25.1 1.8 37 117-154 22-60 (117)
76 2cu8_A Cysteine-rich protein 2 29.8 23 0.00079 23.0 1.6 25 118-142 37-61 (76)
77 1vd4_A Transcription initiatio 29.7 19 0.00064 22.2 1.1 26 116-141 13-50 (62)
78 2cot_A Zinc finger protein 435 29.7 67 0.0023 19.9 3.9 27 116-142 17-58 (77)
79 1bbo_A Human enhancer-binding 29.5 24 0.00082 20.5 1.5 11 131-141 29-40 (57)
80 1wyh_A SLIM 2, skeletal muscle 29.4 17 0.00057 23.2 0.8 27 118-144 34-60 (72)
81 1a7i_A QCRP2 (LIM1); LIM domai 29.0 17 0.00058 24.0 0.8 25 119-143 36-60 (81)
82 2dar_A PDZ and LIM domain prot 28.6 18 0.00061 24.5 0.9 11 117-127 25-35 (90)
83 1znf_A 31ST zinc finger from X 28.6 16 0.00055 17.7 0.5 11 132-142 2-13 (27)
84 2zet_C Melanophilin; complex, 28.5 22 0.00076 27.6 1.5 30 116-145 67-100 (153)
85 2d8z_A Four and A half LIM dom 28.4 17 0.0006 23.1 0.8 26 118-143 32-57 (70)
86 1x63_A Skeletal muscle LIM-pro 28.0 18 0.00063 23.7 0.9 27 118-144 44-70 (82)
87 2lv2_A Insulinoma-associated p 27.7 34 0.0012 23.2 2.3 28 116-143 27-69 (85)
88 2csz_A Synaptotagmin-like prot 27.7 28 0.00097 24.3 1.8 31 116-146 24-58 (76)
89 3uk3_C Zinc finger protein 217 27.7 25 0.00087 20.4 1.4 11 117-127 4-14 (57)
90 2adr_A ADR1; transcription reg 27.4 28 0.00094 20.6 1.6 11 131-141 30-41 (60)
91 1x62_A C-terminal LIM domain p 27.2 9.8 0.00034 25.2 -0.6 23 119-141 43-65 (79)
92 2kvf_A Zinc finger and BTB dom 27.1 18 0.00063 17.7 0.6 11 132-142 4-15 (28)
93 2kvh_A Zinc finger and BTB dom 27.0 18 0.00061 17.7 0.5 11 132-142 4-15 (27)
94 1ard_A Yeast transcription fac 27.0 17 0.00057 17.8 0.4 11 132-142 3-14 (29)
95 2ayj_A 50S ribosomal protein L 26.9 18 0.0006 24.1 0.6 24 116-139 18-42 (56)
96 2m0d_A Zinc finger and BTB dom 26.9 18 0.00062 17.6 0.5 11 132-142 4-15 (30)
97 2djb_A Polycomb group ring fin 26.8 47 0.0016 21.2 2.7 26 117-143 15-41 (72)
98 2ea6_A Ring finger protein 4; 26.4 34 0.0012 21.2 1.9 28 116-143 14-47 (69)
99 2ecy_A TNF receptor-associated 26.4 47 0.0016 20.7 2.6 39 116-155 14-56 (66)
100 2lvu_A Zinc finger and BTB dom 32.4 14 0.00047 18.0 0.0 12 132-143 3-15 (26)
101 2uzg_A Ubiquitin carboxyl-term 26.3 41 0.0014 23.8 2.6 26 117-143 25-53 (97)
102 2elx_A Zinc finger protein 406 26.1 24 0.00081 18.2 1.0 12 131-142 7-19 (35)
103 2elo_A Zinc finger protein 406 26.0 25 0.00085 18.5 1.1 12 131-142 9-21 (37)
104 2d8y_A Eplin protein; LIM doma 25.8 18 0.00062 24.5 0.5 25 119-143 44-68 (91)
105 2kvg_A Zinc finger and BTB dom 25.8 19 0.00063 17.8 0.4 11 132-142 4-15 (27)
106 1zbd_B Rabphilin-3A; G protein 25.6 33 0.0011 25.9 2.0 27 117-143 55-85 (134)
107 2yur_A Retinoblastoma-binding 25.5 53 0.0018 21.1 2.8 27 116-143 14-41 (74)
108 2m0f_A Zinc finger and BTB dom 25.1 19 0.00065 17.5 0.4 11 132-142 3-14 (29)
109 2ecw_A Tripartite motif-contai 25.0 96 0.0033 19.7 4.1 26 117-143 19-44 (85)
110 3l11_A E3 ubiquitin-protein li 24.9 26 0.0009 24.5 1.3 48 117-165 15-69 (115)
111 1p7a_A BF3, BKLF, kruppel-like 24.7 27 0.00093 18.3 1.1 10 132-141 12-22 (37)
112 2egq_A FHL1 protein; LIM domai 24.7 22 0.00074 23.1 0.7 27 118-144 47-73 (77)
113 1x6e_A Zinc finger protein 24; 24.6 48 0.0016 20.4 2.4 26 116-141 13-53 (72)
114 2csy_A Zinc finger protein 183 24.5 65 0.0022 20.9 3.2 26 117-143 15-40 (81)
115 1paa_A Yeast transcription fac 24.3 19 0.00066 17.8 0.4 12 132-143 3-15 (30)
116 1srk_A Zinc finger protein ZFP 24.3 27 0.00092 18.1 1.0 12 131-142 7-19 (35)
117 1klr_A Zinc finger Y-chromosom 24.2 19 0.00066 17.5 0.3 11 132-142 3-14 (30)
118 2ctd_A Zinc finger protein 512 24.0 29 0.00097 23.6 1.3 11 117-127 34-44 (96)
119 2db6_A SH3 and cysteine rich d 24.0 23 0.00078 23.8 0.7 25 116-140 27-55 (74)
120 2ee8_A Protein ODD-skipped-rel 23.8 77 0.0026 20.7 3.5 28 115-142 15-57 (106)
121 2gqj_A Zinc finger protein KIA 23.5 22 0.00076 23.8 0.6 13 116-128 23-35 (98)
122 1iml_A CRIP, cysteine rich int 23.4 36 0.0012 22.0 1.7 25 118-142 28-52 (76)
123 2m0e_A Zinc finger and BTB dom 23.2 25 0.00084 16.9 0.6 12 132-143 3-15 (29)
124 1yop_A KTI11P; zinc finger, me 23.2 21 0.00072 25.2 0.4 14 130-143 22-35 (83)
125 1x3h_A Leupaxin; paxillin fami 22.8 26 0.00088 22.8 0.8 27 118-144 42-68 (80)
126 1rik_A E6APC1 peptide; E6-bind 22.4 25 0.00084 17.2 0.5 12 132-143 3-15 (29)
127 2lvt_A Zinc finger and BTB dom 27.7 19 0.00064 17.8 0.0 12 132-143 3-15 (29)
128 1x5w_A Zinc finger protein 64, 22.1 42 0.0014 20.5 1.7 12 116-127 8-19 (70)
129 2elp_A Zinc finger protein 406 22.1 36 0.0012 17.9 1.2 12 131-142 9-21 (37)
130 2cur_A Skeletal muscle LIM-pro 22.0 28 0.00097 22.0 0.9 26 118-143 32-57 (69)
131 2elt_A Zinc finger protein 406 21.8 31 0.0011 17.9 0.9 11 131-141 9-20 (36)
132 3cc2_Z 50S ribosomal protein L 21.4 21 0.00073 26.9 0.2 32 113-144 56-92 (116)
133 2elm_A Zinc finger protein 406 21.4 35 0.0012 18.2 1.1 12 131-142 9-21 (37)
134 2jr7_A DPH3 homolog; DESR1, CS 21.2 24 0.00083 25.3 0.4 13 129-141 21-33 (89)
135 1e4u_A Transcriptional repress 21.1 33 0.0011 23.1 1.1 36 118-153 12-54 (78)
136 2yqq_A Zinc finger HIT domain- 20.9 47 0.0016 21.8 1.8 24 117-143 12-36 (56)
137 2elv_A Zinc finger protein 406 20.9 34 0.0012 17.8 1.0 12 131-142 9-21 (36)
138 1ffk_W Ribosomal protein L37AE 20.8 25 0.00085 24.4 0.4 31 113-143 23-58 (73)
139 1bor_A Transcription factor PM 20.7 69 0.0024 19.6 2.5 38 117-155 6-43 (56)
140 2ckl_B Ubiquitin ligase protei 20.4 32 0.0011 25.7 1.0 26 117-143 54-80 (165)
141 1wil_A KIAA1045 protein; ring 20.3 64 0.0022 23.3 2.5 25 116-140 14-39 (89)
No 1
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.95 E-value=8.3e-30 Score=186.58 Aligned_cols=62 Identities=48% Similarity=1.039 Sum_probs=59.1
Q ss_pred CCCCCCcccccccccCcc-ceeeecCccccCccccCCCCCCcccchHHHHHHHHHhCCccccc
Q 030304 113 AKEGPKRCTTCNKRVGLT-GFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAE 174 (179)
Q Consensus 113 ~~~~~~rC~~C~kk~gl~-gf~CrCg~~FC~~HRy~~~H~C~fDyk~~gre~l~k~Np~v~~~ 174 (179)
+++.++||+.|+|||||+ +|+||||++||+.|||+|+|+|+||||++||++|+|+||+|+++
T Consensus 21 ~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~ 83 (85)
T 1wff_A 21 KKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS 83 (85)
T ss_dssp CCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred CcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence 456789999999999996 99999999999999999999999999999999999999999986
No 2
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.92 E-value=4.7e-27 Score=163.88 Aligned_cols=54 Identities=52% Similarity=1.192 Sum_probs=50.8
Q ss_pred CCCCCCCcccccccccCccceeeecCccccCccccCCCCCCcccchHHHHHHHH
Q 030304 112 KAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAIA 165 (179)
Q Consensus 112 ~~~~~~~rC~~C~kk~gl~gf~CrCg~~FC~~HRy~~~H~C~fDyk~~gre~l~ 165 (179)
+++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|+
T Consensus 10 ~~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~ 63 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS 63 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred CCCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence 456678999999999999999999999999999999999999999999999875
No 3
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.92 E-value=1.1e-26 Score=162.01 Aligned_cols=54 Identities=41% Similarity=1.052 Sum_probs=50.2
Q ss_pred CCCCCCCCcccccccccCccceeeecCccccCccccCCCCCCcccchHHHHHHH
Q 030304 111 VKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAI 164 (179)
Q Consensus 111 ~~~~~~~~rC~~C~kk~gl~gf~CrCg~~FC~~HRy~~~H~C~fDyk~~gre~l 164 (179)
..+++.++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|
T Consensus 9 ~~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 9 SRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS 62 (64)
T ss_dssp SCCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred CCCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence 345567899999999999999999999999999999999999999999999876
No 4
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.91 E-value=2e-25 Score=159.51 Aligned_cols=52 Identities=60% Similarity=1.299 Sum_probs=48.4
Q ss_pred CCCCCCCcccccccccCccceeeecCccccCccccCCCCCCcccchHHHHHH
Q 030304 112 KAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREA 163 (179)
Q Consensus 112 ~~~~~~~rC~~C~kk~gl~gf~CrCg~~FC~~HRy~~~H~C~fDyk~~gre~ 163 (179)
++++.+|||++|+|||||+||.||||++||+.|||+|+|+|+||||++||++
T Consensus 20 ~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~ 71 (74)
T 1wfl_A 20 LPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEASGP 71 (74)
T ss_dssp CCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSSCC
T ss_pred cCCCcCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhhhchhh
Confidence 4455789999999999999999999999999999999999999999999874
No 5
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=99.90 E-value=1.7e-25 Score=159.92 Aligned_cols=54 Identities=46% Similarity=1.081 Sum_probs=50.4
Q ss_pred CCCCCCCCcccccccccCccceeeecCccccCccccCCCCCCcccchHHHHHHH
Q 030304 111 VKAKEGPKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAI 164 (179)
Q Consensus 111 ~~~~~~~~rC~~C~kk~gl~gf~CrCg~~FC~~HRy~~~H~C~fDyk~~gre~l 164 (179)
.++++.++||+.|+|||||++|+||||++||+.|||+|+|+|+||||++||++|
T Consensus 19 ~~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPS 72 (74)
T ss_dssp CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCCCCC
T ss_pred ccCcccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHHhHHhh
Confidence 345677899999999999999999999999999999999999999999999876
No 6
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=8.8e-26 Score=158.78 Aligned_cols=55 Identities=29% Similarity=0.746 Sum_probs=49.9
Q ss_pred CCCCCCCCCcccccccccCccc---eeeecCccccCccccCCCCCCcccchHHHHHHH
Q 030304 110 GVKAKEGPKRCTTCNKRVGLTG---FNCRCGNLFCAVHRYSDKHGCPFDYRTAAREAI 164 (179)
Q Consensus 110 ~~~~~~~~~rC~~C~kk~gl~g---f~CrCg~~FC~~HRy~~~H~C~fDyk~~gre~l 164 (179)
..++++.++||+.|+|||||+| |+||||++||+.|||+|+|+|+||||++||+.|
T Consensus 8 ~~~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~~ 65 (67)
T 1x4w_A 8 SRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS 65 (67)
T ss_dssp CCCSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCSSCCCC
T ss_pred CccCCccCCcchhhCCeecccccCceEecCCCEehhccCCccccCCcccccccccccc
Confidence 3455677899999999999995 999999999999999999999999999999764
No 7
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=99.78 E-value=1.3e-19 Score=125.53 Aligned_cols=46 Identities=39% Similarity=0.839 Sum_probs=37.6
Q ss_pred ccccccccCCCCCCCCcccccCCCCCCccccccchhHHHHHHHHHHHHHh
Q 030304 8 KMESHDETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQEQAQ 57 (179)
Q Consensus 8 ~M~~~~~~~~q~p~~p~lCaNgCGFfGs~at~nlCSkCyr~~~~~~~~~~ 57 (179)
.|+ + ++. +|++|+||+|||||||||+|+||||||||+++.+++++.
T Consensus 2 ~M~-~-e~~--~~~~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~~ 47 (62)
T 2kzy_A 2 SMA-Q-ETN--QTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSG 47 (62)
T ss_dssp CCC-C-CCC--CCSCCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHHC
T ss_pred chh-h-ccc--CCCcccchhhCCCCcCChhhcCcCHHHHHHHHHhhhccc
Confidence 377 4 332 477899999999999999999999999999987666543
No 8
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=99.73 E-value=8.4e-19 Score=124.82 Aligned_cols=40 Identities=28% Similarity=0.732 Sum_probs=26.8
Q ss_pred ccCCCCCCCCcccccCCCCCCccccccchhHHHHHHHHHH
Q 030304 14 ETGCQAPEGPILCVNNCGFFGSAATMNMCSKCHKAMILNQ 53 (179)
Q Consensus 14 ~~~~q~p~~p~lCaNgCGFfGs~at~nlCSkCyr~~~~~~ 53 (179)
.++++.|++|+||+|||||||||+|+||||||||+...++
T Consensus 7 ~~~~q~pe~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~ 46 (74)
T 2c7n_A 7 RRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKA 46 (74)
T ss_dssp -----------CCTTCSSSCCCGGGTTCCHHHHHHHHHHH
T ss_pred hccCCCCCcchhHHhCCCCCCChhhcCccHHHHHHHHHHH
Confidence 5568889999999999999999999999999999986543
No 9
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=99.61 E-value=2.7e-16 Score=103.77 Aligned_cols=29 Identities=21% Similarity=0.580 Sum_probs=27.0
Q ss_pred Ccccc-cCCCCCCccccccchhHHHHHHHH
Q 030304 23 PILCV-NNCGFFGSAATMNMCSKCHKAMIL 51 (179)
Q Consensus 23 p~lCa-NgCGFfGs~at~nlCSkCyr~~~~ 51 (179)
..||+ |||||||||+|+|||||||||++.
T Consensus 18 q~lC~~ngCGFfG~p~t~n~CSkCyre~~e 47 (49)
T 3oj3_I 18 TSKCRKAGCVYFGTPENKGFCTLCFIEYRE 47 (49)
T ss_dssp CCBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred ccccccCCCCCccCcccCCcchHHHHHHHH
Confidence 37999 999999999999999999999864
No 10
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=99.31 E-value=4.7e-13 Score=97.91 Aligned_cols=59 Identities=22% Similarity=0.440 Sum_probs=49.9
Q ss_pred CCCCCCcccc--cccccCccceeee-cCccccCccccCCCCCCcccchHHHHHHHHHhCCcccccccccC
Q 030304 113 AKEGPKRCTT--CNKRVGLTGFNCR-CGNLFCAVHRYSDKHGCPFDYRTAAREAIAKANPVVKAEKLDKI 179 (179)
Q Consensus 113 ~~~~~~rC~~--C~kk~gl~gf~Cr-Cg~~FC~~HRy~~~H~C~fDyk~~gre~l~k~Np~v~~~Ki~KI 179 (179)
.+..++||.. |+++ +|++|.|+ |+.+||..|||++.|+|... .+.+.++...+.++.+|
T Consensus 21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~-------~~~k~~~~~~~~l~~~~ 82 (86)
T 1wfe_A 21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKL-------EVAKPRMAATQKLVRSG 82 (86)
T ss_dssp SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSS-------SCCCSSCCCCCCCSSCS
T ss_pred cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCC-------cccccchHHHHHHHHHH
Confidence 3456799998 9998 78999999 99999999999999999975 34677888877777765
No 11
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-12 Score=90.69 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=36.9
Q ss_pred CCCCCCcccc--cccccCccceeee-cCccccCccccCCCCCCc
Q 030304 113 AKEGPKRCTT--CNKRVGLTGFNCR-CGNLFCAVHRYSDKHGCP 153 (179)
Q Consensus 113 ~~~~~~rC~~--C~kk~gl~gf~Cr-Cg~~FC~~HRy~~~H~C~ 153 (179)
++...+||.. |+++ +|++|.|+ |+.+||..|||+|+|+|.
T Consensus 8 ~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR~~e~H~C~ 50 (63)
T 1x4v_A 8 RKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHRHPLDHDCS 50 (63)
T ss_dssp CCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHHSTTSSCCC
T ss_pred CcccCCCCCccCCCCC-CccceECCCCCcccCcccCCccCCcCC
Confidence 4556899998 9998 89999999 999999999999999997
No 12
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.18 E-value=7.7e-12 Score=89.46 Aligned_cols=41 Identities=34% Similarity=0.806 Sum_probs=38.3
Q ss_pred CCCcccc--cccccCccceeee-cCccccCccccCCCCCCcccch
Q 030304 116 GPKRCTT--CNKRVGLTGFNCR-CGNLFCAVHRYSDKHGCPFDYR 157 (179)
Q Consensus 116 ~~~rC~~--C~kk~gl~gf~Cr-Cg~~FC~~HRy~~~H~C~fDyk 157 (179)
..+||.. |+++ ++++|+|+ |+.+||..|||++.|+|+++++
T Consensus 13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~ 56 (75)
T 1wys_A 13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHRSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTCSSGGGTCCCCSS
T ss_pred cCCCcCcccCCCc-cceeeECcccCcCcCcccCCccccCCCCCcc
Confidence 4689998 9987 79999999 9999999999999999999986
No 13
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=97.84 E-value=1e-05 Score=52.77 Aligned_cols=30 Identities=23% Similarity=0.623 Sum_probs=26.7
Q ss_pred CCcccc-cCCCCCCccccccchhHHHHHHHH
Q 030304 22 GPILCV-NNCGFFGSAATMNMCSKCHKAMIL 51 (179)
Q Consensus 22 ~p~lCa-NgCGFfGs~at~nlCSkCyr~~~~ 51 (179)
+..+|. .||-|||+|.+.++|..||.++..
T Consensus 14 gt~kCRk~GC~fFGTpen~GFCTlCf~eyre 44 (48)
T 2eqe_A 14 GTSKCRKAGCVYFGTPENKGFCTLCFIEYSG 44 (48)
T ss_dssp CSSBCSSTTCCSBCCTTTTTCCHHHHHHHHS
T ss_pred ccchhhhcCCCcccCcccCceeeeehhhhhc
Confidence 346896 999999999999999999999853
No 14
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=92.96 E-value=0.053 Score=38.05 Aligned_cols=28 Identities=32% Similarity=1.050 Sum_probs=24.4
Q ss_pred CCcccccccccCcc--ceeee-cCccccCcc
Q 030304 117 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 117 ~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
...|..|+++.+++ --.|| ||.+||+.+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHH
Confidence 45799999999987 48999 999999974
No 15
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=92.64 E-value=0.046 Score=37.55 Aligned_cols=27 Identities=41% Similarity=1.117 Sum_probs=24.1
Q ss_pred CcccccccccCcc--ceeee-cCccccCcc
Q 030304 118 KRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
..|..|+++.+++ --.|| ||.+||+.+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~C 41 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEH 41 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccc
Confidence 4799999999987 49999 999999985
No 16
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=92.43 E-value=0.089 Score=37.62 Aligned_cols=28 Identities=32% Similarity=0.895 Sum_probs=24.6
Q ss_pred CCcccccccccCccc--eeee-cCccccCcc
Q 030304 117 PKRCTTCNKRVGLTG--FNCR-CGNLFCAVH 144 (179)
Q Consensus 117 ~~rC~~C~kk~gl~g--f~Cr-Cg~~FC~~H 144 (179)
...|..|.++.+++. -.|| ||.+||+.+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 468999999999874 8999 999999984
No 17
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=92.27 E-value=0.059 Score=40.83 Aligned_cols=28 Identities=43% Similarity=1.060 Sum_probs=24.4
Q ss_pred CCcccccccccCcc--ceeee-cCccccCcc
Q 030304 117 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 117 ~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
...|..|+++.+++ -..|| ||.+||+.+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHH
Confidence 46899999999987 48999 999999874
No 18
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.74 E-value=0.11 Score=36.44 Aligned_cols=29 Identities=31% Similarity=0.754 Sum_probs=24.9
Q ss_pred CCCcccccccccCcc--ceeee-cCccccCcc
Q 030304 116 GPKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
....|..|.++.+++ --.|| ||.+||+..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 346899999999987 48999 999999974
No 19
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=91.55 E-value=0.1 Score=36.69 Aligned_cols=29 Identities=28% Similarity=0.713 Sum_probs=25.0
Q ss_pred CCCcccccccccCcc--ceeee-cCccccCcc
Q 030304 116 GPKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
....|..|+++.+++ --.|| ||.+||+.+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 51 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDC 51 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHH
Confidence 356899999999987 48999 999999873
No 20
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=90.25 E-value=0.13 Score=36.72 Aligned_cols=28 Identities=36% Similarity=1.031 Sum_probs=24.5
Q ss_pred CCCcccccccccCcc--ceeee-cCccccCc
Q 030304 116 GPKRCTTCNKRVGLT--GFNCR-CGNLFCAV 143 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~ 143 (179)
....|..|.++.+++ -..|| ||.+||+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCc
Confidence 346799999999987 59999 99999987
No 21
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=90.11 E-value=0.12 Score=41.87 Aligned_cols=28 Identities=32% Similarity=0.917 Sum_probs=24.6
Q ss_pred CCcccccccccCcc--ceeee-cCccccCcc
Q 030304 117 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 117 ~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
...|..|+++.+++ --+|| ||.+||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~C 191 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC 191 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTT
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHH
Confidence 36899999999987 49999 999999974
No 22
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=89.33 E-value=0.2 Score=41.11 Aligned_cols=28 Identities=32% Similarity=1.025 Sum_probs=24.6
Q ss_pred CCcccccccccCcc--ceeee-cCccccCcc
Q 030304 117 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 117 ~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
...|..|+++.+++ -.+|| ||.+||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~C 194 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKC 194 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTT
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhh
Confidence 46899999999987 59999 999999874
No 23
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=87.64 E-value=0.22 Score=37.83 Aligned_cols=41 Identities=22% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCcccccccccCcc--ceeee-cCccccCc---cccCCCCCCcccch
Q 030304 117 PKRCTTCNKRVGLT--GFNCR-CGNLFCAV---HRYSDKHGCPFDYR 157 (179)
Q Consensus 117 ~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~---HRy~~~H~C~fDyk 157 (179)
...|..|+++.+++ --.|| ||.+||+. |+.+..--|..=|.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 46899999999886 48999 99999987 56665666765555
No 24
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=84.96 E-value=0.49 Score=40.89 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=28.6
Q ss_pred CCCCccccccccc-Ccc--ceeee-cCccccCc-cccCCCCCCcccch
Q 030304 115 EGPKRCTTCNKRV-GLT--GFNCR-CGNLFCAV-HRYSDKHGCPFDYR 157 (179)
Q Consensus 115 ~~~~rC~~C~kk~-gl~--gf~Cr-Cg~~FC~~-HRy~~~H~C~fDyk 157 (179)
..+..|..|++.+ |+. |++|| ||.++|.. |..-. . |.-+.-
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~-C~~~~~ 400 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-P-CGRHGQ 400 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-C-C-----
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-C-CCCCch
Confidence 4578999999988 674 99999 99999998 34333 3 977644
No 25
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=79.84 E-value=0.97 Score=28.84 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=21.5
Q ss_pred ccccCCCCCCccccccchhHHHHH
Q 030304 25 LCVNNCGFFGSAATMNMCSKCHKA 48 (179)
Q Consensus 25 lCaNgCGFfGs~at~nlCSkCyr~ 48 (179)
-++.+|..|||..-+++|-.||.-
T Consensus 12 C~apgCdhygN~kc~GyCNeC~~f 35 (46)
T 2eqf_A 12 CRAPACDHFGNAKCNGYCNECFQF 35 (46)
T ss_dssp CSSTTCCSCCBGGGTBSCHHHHHH
T ss_pred ccCcccccccchhhhhhhHHHHhh
Confidence 348999999999999999999964
No 26
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=78.28 E-value=0.74 Score=30.74 Aligned_cols=23 Identities=35% Similarity=1.003 Sum_probs=19.0
Q ss_pred CCCcccccccccCc--cceeee-cCc
Q 030304 116 GPKRCTTCNKRVGL--TGFNCR-CGN 138 (179)
Q Consensus 116 ~~~rC~~C~kk~gl--~gf~Cr-Cg~ 138 (179)
.+..|..|++++++ .|++|+ |+.
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~ 43 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRV 43 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSC
T ss_pred CCcccccccCEEEEeeEeeECCCCCC
Confidence 46789999999987 589999 753
No 27
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=77.34 E-value=0.47 Score=41.10 Aligned_cols=28 Identities=29% Similarity=0.758 Sum_probs=0.0
Q ss_pred CCcccccccccCcc--ceeee-cCccccCcc
Q 030304 117 PKRCTTCNKRVGLT--GFNCR-CGNLFCAVH 144 (179)
Q Consensus 117 ~~rC~~C~kk~gl~--gf~Cr-Cg~~FC~~H 144 (179)
...|..|+++.+++ ...|| ||.+||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp -------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhh
Confidence 56899999999986 59999 999999763
No 28
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=69.75 E-value=2 Score=31.73 Aligned_cols=30 Identities=27% Similarity=0.789 Sum_probs=23.1
Q ss_pred CCcccccccccCccceeee-cCccccCccccCCCC
Q 030304 117 PKRCTTCNKRVGLTGFNCR-CGNLFCAVHRYSDKH 150 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~Cr-Cg~~FC~~HRy~~~H 150 (179)
..+|..|....++ +.|- ||+++|+ ||+..|
T Consensus 24 ~~~C~~C~~~~~~--W~CL~CG~vgCg--r~~~~H 54 (109)
T 3c5k_A 24 TQPCGDCGTIQEN--WVCLSCYQVYCG--RYINGH 54 (109)
T ss_dssp TCCCTTTCCCSSE--EEETTTCCEEEC--TTTTCH
T ss_pred CCcCccccCCCCe--eeeeecCccccC--CCcChH
Confidence 4689999987665 6688 9999998 455444
No 29
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=69.53 E-value=2.8 Score=27.01 Aligned_cols=27 Identities=33% Similarity=0.765 Sum_probs=22.8
Q ss_pred ccc-ccCCCCCCccccccchhHHHHHHH
Q 030304 24 ILC-VNNCGFFGSAATMNMCSKCHKAMI 50 (179)
Q Consensus 24 ~lC-aNgCGFfGs~at~nlCSkCyr~~~ 50 (179)
+.| ..||-||=|-.|+-+|-.||...+
T Consensus 12 vkCeTPnCpF~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 12 VKCETPNCPFFMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp SBCSSTTCCSBCCTTTTTSCHHHHHHHH
T ss_pred EeecCCCCCeEEEecCccchHHHHHHHh
Confidence 356 569999999999999999998654
No 30
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=63.47 E-value=4.1 Score=25.00 Aligned_cols=24 Identities=38% Similarity=1.006 Sum_probs=18.6
Q ss_pred CCCccccccccc-Cc--cceeee-cCcc
Q 030304 116 GPKRCTTCNKRV-GL--TGFNCR-CGNL 139 (179)
Q Consensus 116 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~ 139 (179)
.+..|..|++.| || .|++|+ |+.+
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 37 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCCcCCCCceeeccCCccCEeCCCCCe
Confidence 467899999988 44 489998 7654
No 31
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=62.66 E-value=4.3 Score=28.80 Aligned_cols=23 Identities=30% Similarity=0.907 Sum_probs=18.1
Q ss_pred CCccccccccc----Cccceeee-cCcc
Q 030304 117 PKRCTTCNKRV----GLTGFNCR-CGNL 139 (179)
Q Consensus 117 ~~rC~~C~kk~----gl~gf~Cr-Cg~~ 139 (179)
..+|..|+|.+ +|.||+|. |+.+
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~ 65 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAM 65 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCE
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChh
Confidence 46899999985 56799998 7554
No 32
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.49 E-value=3.1 Score=27.84 Aligned_cols=35 Identities=29% Similarity=0.741 Sum_probs=26.5
Q ss_pred cccccccccCccc-eeee-cCccccCc---cccCCCCCCc
Q 030304 119 RCTTCNKRVGLTG-FNCR-CGNLFCAV---HRYSDKHGCP 153 (179)
Q Consensus 119 rC~~C~kk~gl~g-f~Cr-Cg~~FC~~---HRy~~~H~C~ 153 (179)
.|+.|.+++.-.+ |.|. |+..||.. -.+-.-|+|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CP 56 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCP 56 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSS
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCc
Confidence 4999999986555 9998 99999965 3344567775
No 33
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=62.47 E-value=8.6 Score=25.14 Aligned_cols=25 Identities=36% Similarity=0.957 Sum_probs=19.3
Q ss_pred CCCccccccccc-Cc--cceeee-cCccc
Q 030304 116 GPKRCTTCNKRV-GL--TGFNCR-CGNLF 140 (179)
Q Consensus 116 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~F 140 (179)
.+..|..|++.| || .|++|+ |+.+.
T Consensus 22 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 22 SPTFCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp SCCBCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred CCcCchhcChhheecCCcccccCCCCCcc
Confidence 467899999987 44 489999 76653
No 34
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.95 E-value=3.8 Score=27.86 Aligned_cols=25 Identities=28% Similarity=0.648 Sum_probs=19.6
Q ss_pred CCCCcccccccccCcc---ceeee-cCcc
Q 030304 115 EGPKRCTTCNKRVGLT---GFNCR-CGNL 139 (179)
Q Consensus 115 ~~~~rC~~C~kk~gl~---gf~Cr-Cg~~ 139 (179)
.-.-+|..|+..+.|. +.+|+ ||+-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHR 47 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcE
Confidence 4568999999999985 58887 7543
No 35
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=60.98 E-value=3.1 Score=26.64 Aligned_cols=22 Identities=27% Similarity=0.836 Sum_probs=17.9
Q ss_pred CcccccccccCccceeee-cCccc
Q 030304 118 KRCTTCNKRVGLTGFNCR-CGNLF 140 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~Cr-Cg~~F 140 (179)
..|..|+|.| ..|++|+ |++.+
T Consensus 15 t~C~~C~k~i-~~G~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSM-IFGVKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSS-CCEEEETTTTEEE
T ss_pred cCccccCcee-ECcCCCCCCCCcc
Confidence 5699999998 5799999 76654
No 36
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.07 E-value=4.1 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=17.3
Q ss_pred ccCccceeee-cCccccCccccCCCCCCc
Q 030304 126 RVGLTGFNCR-CGNLFCAVHRYSDKHGCP 153 (179)
Q Consensus 126 k~gl~gf~Cr-Cg~~FC~~HRy~~~H~C~ 153 (179)
+|-+..++|+ ||++|. -+......|+
T Consensus 62 ~L~v~p~~C~~CG~~F~--~~~~kPsrCP 88 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK--AEINIPSRCP 88 (105)
T ss_dssp EEEECCCBBTTTCCBCC--CCSSCCSSCS
T ss_pred EEEEECcChhhCcCeec--ccCCCCCCCc
Confidence 5556689999 999993 3444445554
No 37
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.81 E-value=5.5 Score=27.44 Aligned_cols=25 Identities=40% Similarity=1.068 Sum_probs=19.8
Q ss_pred CCCccccccccc-Cc--cceeee-cCccc
Q 030304 116 GPKRCTTCNKRV-GL--TGFNCR-CGNLF 140 (179)
Q Consensus 116 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~F 140 (179)
.+..|..|++.| || .|++|+ |+.++
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~ 55 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAI 55 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEE
T ss_pred CCcChhhcChhhccccccccccCCcCCee
Confidence 578899999988 44 489999 87663
No 38
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.44 E-value=5.4 Score=26.33 Aligned_cols=29 Identities=34% Similarity=0.842 Sum_probs=23.9
Q ss_pred CCCcccccccccCccc----eeee---cCccccCcc
Q 030304 116 GPKRCTTCNKRVGLTG----FNCR---CGNLFCAVH 144 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~g----f~Cr---Cg~~FC~~H 144 (179)
...+|..|+..|.+.+ .+|+ |+..||..=
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C 40 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVC 40 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSS
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCc
Confidence 4578999998888863 8998 999999873
No 39
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=56.46 E-value=5.8 Score=26.91 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=20.7
Q ss_pred CCCCcccccccccCccceeee-cCcc
Q 030304 115 EGPKRCTTCNKRVGLTGFNCR-CGNL 139 (179)
Q Consensus 115 ~~~~rC~~C~kk~gl~gf~Cr-Cg~~ 139 (179)
..+..|..|++.|+-.|++|+ ||.+
T Consensus 33 ~~pt~C~~C~~~l~~qG~kC~~C~~~ 58 (72)
T 2fnf_X 33 GGPGWCDLCGREVLRQALRCANCKFT 58 (72)
T ss_dssp SSCCBCTTTSSBCSSCCEECTTSSCE
T ss_pred CCCcchhhhhHHHHhCcCccCCCCCe
Confidence 457899999999955799999 7665
No 40
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=56.44 E-value=3.1 Score=27.67 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=10.9
Q ss_pred CCcccccccccCc
Q 030304 117 PKRCTTCNKRVGL 129 (179)
Q Consensus 117 ~~rC~~C~kk~gl 129 (179)
|.||++|+|-+|-
T Consensus 3 PVRCFTCGkvi~~ 15 (55)
T 1ef4_A 3 PVRCLSCGKPVSA 15 (55)
T ss_dssp SSSCSCTTSCCHH
T ss_pred CeecCCCCCChhH
Confidence 6899999998753
No 41
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=54.49 E-value=6 Score=35.99 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=28.6
Q ss_pred CCCCccccccccc-Ccc--ceeee-cCccccCc-cccCCCCCCccc
Q 030304 115 EGPKRCTTCNKRV-GLT--GFNCR-CGNLFCAV-HRYSDKHGCPFD 155 (179)
Q Consensus 115 ~~~~rC~~C~kk~-gl~--gf~Cr-Cg~~FC~~-HRy~~~H~C~fD 155 (179)
..+..|..|++.+ ||. |++|+ ||...|.. |.+- ..|...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~v--~~C~~~ 570 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV--PPCGRH 570 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGGS--CCC---
T ss_pred CCCcccccccccccccccCCcCCCCCCCccchhhhhcC--CCCCCC
Confidence 3578899999988 775 99999 99999988 3333 378654
No 42
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=54.46 E-value=4.2 Score=28.29 Aligned_cols=14 Identities=50% Similarity=0.885 Sum_probs=11.7
Q ss_pred CCCcccccccccCc
Q 030304 116 GPKRCTTCNKRVGL 129 (179)
Q Consensus 116 ~~~rC~~C~kk~gl 129 (179)
.|.||++|+|-+|-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 36899999998875
No 43
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=53.13 E-value=7.5 Score=25.38 Aligned_cols=24 Identities=38% Similarity=1.006 Sum_probs=18.6
Q ss_pred CCCccccccccc-Cc--cceeee-cCcc
Q 030304 116 GPKRCTTCNKRV-GL--TGFNCR-CGNL 139 (179)
Q Consensus 116 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~ 139 (179)
.+..|..|++.| || .|++|+ |+.+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 46 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQGLKCEDCGMN 46 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCE
T ss_pred CCCcccccChhhhccCceeeECCCCCCe
Confidence 467899999987 55 489998 7654
No 44
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=52.03 E-value=5.3 Score=25.94 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=20.2
Q ss_pred CCCCcccccccccCccceeee-cCcc
Q 030304 115 EGPKRCTTCNKRVGLTGFNCR-CGNL 139 (179)
Q Consensus 115 ~~~~rC~~C~kk~gl~gf~Cr-Cg~~ 139 (179)
..+..|..|++.|.-.|++|+ |+.+
T Consensus 20 ~~pt~C~~C~~~i~kqg~kC~~C~~~ 45 (59)
T 1rfh_A 20 GGPGWCDLCGREVLRQALRCANCKFT 45 (59)
T ss_dssp SCCEECTTTCSEECSCCEECTTTSCE
T ss_pred CCCeEchhcchhhhhCccEeCCCCCe
Confidence 457889999999955699999 7654
No 45
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.97 E-value=11 Score=25.40 Aligned_cols=29 Identities=28% Similarity=0.595 Sum_probs=17.1
Q ss_pred CcccccccccCccceee--ecCccccCcccc
Q 030304 118 KRCTTCNKRVGLTGFNC--RCGNLFCAVHRY 146 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~C--rCg~~FC~~HRy 146 (179)
-+|..|++.|....|.. +=|..||..|..
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 73 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLP 73 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHH
Confidence 45566666666555553 456667766543
No 46
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=50.95 E-value=5.4 Score=24.71 Aligned_cols=24 Identities=38% Similarity=0.868 Sum_probs=19.3
Q ss_pred CCCcccccccccCccceeee-cCccc
Q 030304 116 GPKRCTTCNKRVGLTGFNCR-CGNLF 140 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~Cr-Cg~~F 140 (179)
.+..|..|++.|- .|++|+ |+.+.
T Consensus 13 ~pt~C~~C~~~l~-qG~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFLL-NGFRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEEC-SEEECTTTTCCB
T ss_pred CCcCCCCcccccc-cCCEeCCCCCeE
Confidence 4678999999875 899999 76554
No 47
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.28 E-value=23 Score=22.02 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=19.0
Q ss_pred CCcccccccccCccceeeecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
...|..|...+.- ...-.||++||..
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 45 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLK 45 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHH
Confidence 4679999876643 3444899999964
No 48
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=46.76 E-value=5.4 Score=27.45 Aligned_cols=12 Identities=42% Similarity=0.982 Sum_probs=10.2
Q ss_pred CCcccccccccC
Q 030304 117 PKRCTTCNKRVG 128 (179)
Q Consensus 117 ~~rC~~C~kk~g 128 (179)
|-||++|+|-+|
T Consensus 4 PVRCFTCGkvi~ 15 (66)
T 4ayb_N 4 PIRCFTCGSLIA 15 (66)
T ss_dssp CSBCTTTCCBCH
T ss_pred CcccCCCcHhHH
Confidence 679999999774
No 49
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=46.11 E-value=11 Score=24.69 Aligned_cols=24 Identities=33% Similarity=0.946 Sum_probs=18.7
Q ss_pred CCCccccccccc-Cc--cceeee-cCcc
Q 030304 116 GPKRCTTCNKRV-GL--TGFNCR-CGNL 139 (179)
Q Consensus 116 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~ 139 (179)
.+..|..|++.| || .|++|+ |+.+
T Consensus 23 ~pt~C~~C~~~l~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 23 TPTYCYECEGLLWGIARQGMRCTECGVK 50 (66)
T ss_dssp SCCCCTTTCCCCCSSCCEEEEETTTCCE
T ss_pred CCcChhhcChhhcccCcceeEcCCCCCe
Confidence 567899999988 44 489998 7655
No 50
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.93 E-value=23 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.499 Sum_probs=19.5
Q ss_pred CCCcccccccccCccceeeecCccccCc
Q 030304 116 GPKRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
....|..|...+.- ...-.||++||..
T Consensus 19 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 19 EEVICPICLDILQK-PVTIDCGHNFCLK 45 (73)
T ss_dssp CCCBCTTTCSBCSS-EEECTTCCEEEHH
T ss_pred cCCEeccCCcccCC-eEEcCCCChhhHH
Confidence 34689999876643 3344899999976
No 51
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.52 E-value=13 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=22.6
Q ss_pred CcccccccccCccceeeecCccccCcccc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVHRY 146 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~HRy 146 (179)
-+|..|++.|....|.=+=|..||..|-.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCGS 64 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHhh
Confidence 57788898887667887888899987643
No 52
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.40 E-value=20 Score=24.74 Aligned_cols=42 Identities=24% Similarity=0.512 Sum_probs=28.4
Q ss_pred CCCccccccccc-Cc--cceeee-cCccccCccccCCCCCCcccch
Q 030304 116 GPKRCTTCNKRV-GL--TGFNCR-CGNLFCAVHRYSDKHGCPFDYR 157 (179)
Q Consensus 116 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~FC~~HRy~~~H~C~fDyk 157 (179)
.+..|..|++.| || .|++|+ |+.++=......=-..|..++.
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v~~~C~~~~~ 72 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLCGMDHT 72 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTSCSCCCCCCC
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhhcCCcCCcchh
Confidence 568899999987 44 489999 8776433333333456777765
No 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.06 E-value=20 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=27.7
Q ss_pred CCCcccccccccCccceeeecCccccCc--cc-cCCCCCCcccchHHHHH
Q 030304 116 GPKRCTTCNKRVGLTGFNCRCGNLFCAV--HR-YSDKHGCPFDYRTAARE 162 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~CrCg~~FC~~--HR-y~~~H~C~fDyk~~gre 162 (179)
....|..|...+.- ...-.||++||.. .+ +.....|.+--+...++
T Consensus 14 ~~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 35679999876533 3445799999975 22 23345676554433333
No 54
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=42.31 E-value=6.9 Score=24.88 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=16.3
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|+...|.=+=|..||..|
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 66 (72)
T 3f6q_B 40 FVCAQCFQQFPEGLFYEFEGRKYCEHD 66 (72)
T ss_dssp SSCTTTCCCCGGGCCEEETTEEECHHH
T ss_pred CcccCCCCCCCCCCeEeECCeEeCHHH
Confidence 356677777655555555566666554
No 55
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=41.87 E-value=9.4 Score=25.94 Aligned_cols=26 Identities=38% Similarity=1.034 Sum_probs=19.8
Q ss_pred CCCCccccccccc-Cc--cceeee-cCccc
Q 030304 115 EGPKRCTTCNKRV-GL--TGFNCR-CGNLF 140 (179)
Q Consensus 115 ~~~~rC~~C~kk~-gl--~gf~Cr-Cg~~F 140 (179)
..+..|..|++-| || .|++|+ |+.+.
T Consensus 32 ~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 61 (77)
T 2enn_A 32 PQPTFCSVCHEFVWGLNKQGYQCRQCNAAI 61 (77)
T ss_dssp SSCEECSSSCCEECCTTCCEEECSSSCCEE
T ss_pred CCCcCccccChhhccccccccCcCCCCCcC
Confidence 3578899999987 44 489999 76554
No 56
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.32 E-value=19 Score=22.52 Aligned_cols=27 Identities=26% Similarity=0.810 Sum_probs=18.8
Q ss_pred CCCcccccccccCc--------------cceeee-cCccccC
Q 030304 116 GPKRCTTCNKRVGL--------------TGFNCR-CGNLFCA 142 (179)
Q Consensus 116 ~~~rC~~C~kk~gl--------------~gf~Cr-Cg~~FC~ 142 (179)
.+-+|..|+|.... ..|.|. ||..|-.
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 46789999887542 248887 7777754
No 57
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.26 E-value=8.8 Score=24.62 Aligned_cols=27 Identities=26% Similarity=0.555 Sum_probs=18.6
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c 58 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPC 58 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHH
Confidence 467788887776666666667777654
No 58
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.82 E-value=40 Score=20.20 Aligned_cols=26 Identities=23% Similarity=0.627 Sum_probs=19.0
Q ss_pred CCcccccccccCccceeeecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
...|..|...+... ..-.||++||..
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~ 40 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-VIIECGHNFCKA 40 (58)
T ss_dssp CCBCSSSCCBCSSC-CCCSSCCCCCHH
T ss_pred CCCCccCCcccCcc-EeCCCCCccCHH
Confidence 46799998766443 445799999975
No 59
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.79 E-value=18 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.705 Sum_probs=21.3
Q ss_pred CcccccccccCccceeee-cCccccCccccC
Q 030304 118 KRCTTCNKRVGLTGFNCR-CGNLFCAVHRYS 147 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~Cr-Cg~~FC~~HRy~ 147 (179)
-+|..|+|... |.|. |...||..|...
T Consensus 59 c~C~~C~k~~~---~~C~~Cp~sfC~~c~~g 86 (107)
T 4gne_A 59 HQCDECSSAAV---SFCEFCPHSFCKDHEKG 86 (107)
T ss_dssp GBCTTTCSBCC---EECSSSSCEECTTTCTT
T ss_pred CCCCcCCCCCC---cCcCCCCcchhhhccCC
Confidence 35778887653 8999 999999998753
No 60
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.36 E-value=11 Score=25.47 Aligned_cols=10 Identities=20% Similarity=0.763 Sum_probs=4.6
Q ss_pred Cccccccccc
Q 030304 118 KRCTTCNKRV 127 (179)
Q Consensus 118 ~rC~~C~kk~ 127 (179)
.+|..|++.|
T Consensus 26 ~~C~~C~~~I 35 (89)
T 1x64_A 26 PLCDKCGSGI 35 (89)
T ss_dssp CBCTTTCCBC
T ss_pred CCcccCCCEe
Confidence 3455554443
No 61
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=35.31 E-value=12 Score=23.72 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=17.8
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|....|.=+=|..||..|
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~ 58 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETH 58 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHH
Confidence 467778877766566666666666554
No 62
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.28 E-value=12 Score=24.36 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.4
Q ss_pred CCCcccccccccCccceeee-cCcc
Q 030304 116 GPKRCTTCNKRVGLTGFNCR-CGNL 139 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~Cr-Cg~~ 139 (179)
....|..|+.+++.---.|| ||++
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC
T ss_pred CCccCCCCCCcCCCCceecCCCCCc
Confidence 46779999999888778999 9987
No 63
>1e0f_I Haemadin, factor IIA; coagulation//heparin-B, coagulation/crystal structure/heparin-binding site/ hirudin/thrombin inhibitor; 3.1A {Haemadipsa sylvestris} SCOP: g.3.15.2
Probab=35.22 E-value=20 Score=23.29 Aligned_cols=30 Identities=27% Similarity=0.710 Sum_probs=22.1
Q ss_pred CccceeeecCccccCccccCCCCCCcccch
Q 030304 128 GLTGFNCRCGNLFCAVHRYSDKHGCPFDYR 157 (179)
Q Consensus 128 gl~gf~CrCg~~FC~~HRy~~~H~C~fDyk 157 (179)
|-.|+.|.||...|-.-.--....|+-|-|
T Consensus 13 gevgytcdcgekiclygqscndgqcsgdpk 42 (57)
T 1e0f_I 13 GEVGYTCDCGEKICLYGQSCNDGQCSGDPK 42 (57)
T ss_dssp SSCSSCEECSSSEECTTCCBSSSCBCSCCC
T ss_pred CceeeeccCCceeeEecccccCCcccCCCC
Confidence 445899999999887766666677776644
No 64
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.77 E-value=12 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=14.1
Q ss_pred CcccccccccCccceeeecCccccCc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
-+|..|++.|....|.=+=|..||..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~ 59 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEG 59 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHH
Confidence 35566666665444555545555544
No 65
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=34.16 E-value=12 Score=23.85 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=19.2
Q ss_pred CCCcccccccccCcc--------------ceeee-cCccccCc
Q 030304 116 GPKRCTTCNKRVGLT--------------GFNCR-CGNLFCAV 143 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~--------------gf~Cr-Cg~~FC~~ 143 (179)
.|-.|..|+|..... .|.|. ||..|-..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 356788888765432 58898 88888653
No 66
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.01 E-value=13 Score=23.99 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=18.8
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c 62 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDC 62 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHH
T ss_pred CEeccCCCcCCCCccEeECCEEEChhH
Confidence 467788887766667667777777654
No 67
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.84 E-value=57 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCcccccccccCccceeeecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
...|..|...+.- ...-.||++||..
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 44 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQA 44 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTT
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHH
Confidence 4679999876643 2344799999976
No 68
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.08 E-value=15 Score=23.53 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=16.7
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPC 60 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHH
Confidence 456677777766556656566666543
No 69
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.03 E-value=25 Score=23.12 Aligned_cols=28 Identities=25% Similarity=0.635 Sum_probs=22.1
Q ss_pred CcccccccccCccceeeecCccccCccc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVHR 145 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~HR 145 (179)
-+|..|++.|....|.=+=|..||..|-
T Consensus 44 F~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 44 FRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp SBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CeecCCCCccCCCccEeeCCEEECHHHH
Confidence 5678899988877787777888887764
No 70
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=31.56 E-value=16 Score=26.37 Aligned_cols=20 Identities=40% Similarity=0.795 Sum_probs=17.2
Q ss_pred ceeeecCccccCccccCCCC
Q 030304 131 GFNCRCGNLFCAVHRYSDKH 150 (179)
Q Consensus 131 gf~CrCg~~FC~~HRy~~~H 150 (179)
=|+|.|++..=+.+|||..|
T Consensus 48 FFkC~C~~Rt~sl~r~P~~~ 67 (92)
T 2kwq_A 48 FFKCPCGNRTISLDRLPKKH 67 (92)
T ss_dssp EEECTTSCEEEESSSSCCSC
T ss_pred EEECCCCCceeEeeeCCCCC
Confidence 39999999998889999854
No 71
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.27 E-value=13 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=12.7
Q ss_pred cccccccccCccceeeecCccccCc
Q 030304 119 RCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 119 rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
+|..|++.|....|.=+=|..||..
T Consensus 41 ~C~~C~~~L~~~~~~~~~g~~yC~~ 65 (77)
T 1g47_A 41 VCAQCFQQFPEGLFYEFEGRKYCEH 65 (77)
T ss_dssp CCTTTCCCCGGGCSEEETTEEECHH
T ss_pred eECCCCCCCCCCCeEeECCeEeCHH
Confidence 4555555555444544444555543
No 72
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.17 E-value=19 Score=18.94 Aligned_cols=13 Identities=23% Similarity=0.575 Sum_probs=7.5
Q ss_pred cceeee-cCccccC
Q 030304 130 TGFNCR-CGNLFCA 142 (179)
Q Consensus 130 ~gf~Cr-Cg~~FC~ 142 (179)
..|.|. ||..|-.
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 346666 6666644
No 73
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.33 E-value=47 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=19.4
Q ss_pred CCcccccccccCcc---ceeeecCccccCc
Q 030304 117 PKRCTTCNKRVGLT---GFNCRCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~---gf~CrCg~~FC~~ 143 (179)
...|..|...+... ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~ 44 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQ 44 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHH
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHH
Confidence 46799998776541 3445799999975
No 74
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=30.09 E-value=16 Score=25.82 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCCcccccccccCc---c--ceeee-cCccccCcccc---CCCCCCcccc
Q 030304 115 EGPKRCTTCNKRVGL---T--GFNCR-CGNLFCAVHRY---SDKHGCPFDY 156 (179)
Q Consensus 115 ~~~~rC~~C~kk~gl---~--gf~Cr-Cg~~FC~~HRy---~~~H~C~fDy 156 (179)
..+..|..|++.|=- . ||+|+ |+.+.=.++.. .--..|..+|
T Consensus 33 ~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~HkrC~~k~~~v~~~C~~~~ 83 (84)
T 2row_A 33 HFPTNCEACMKPLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKVYY 83 (84)
T ss_dssp SSCEECSSSSSEECCSSSCCCEEEESSSCCEEEHHHHHHTCTTCCCCSTTT
T ss_pred CCCcchhhcCHhhhccccCCCCCEecCCCCccchhHhCCccccccccCcCC
Confidence 356789999988743 2 89999 76654333333 2334555554
No 75
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.95 E-value=23 Score=25.06 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=23.2
Q ss_pred CCcccccccccCccceeeecCccccCc--cccCCCCCCcc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV--HRYSDKHGCPF 154 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~--HRy~~~H~C~f 154 (179)
.-.|..|..-+.-.-....||++||.. .++-. ..|+.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~ 60 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPV 60 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSS
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcC
Confidence 467999976554333333899999976 33433 45654
No 76
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.80 E-value=23 Score=22.97 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=16.8
Q ss_pred CcccccccccCccceeeecCccccC
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCA 142 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~ 142 (179)
-+|..|++.|....|.=+=|..||.
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~ 61 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCH 61 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECT
T ss_pred CCCCCCCCccCCCceEeECCEEecc
Confidence 4677777777665566666666765
No 77
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.68 E-value=19 Score=22.22 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=16.9
Q ss_pred CCCccccccccc-----------Cccceeee-cCcccc
Q 030304 116 GPKRCTTCNKRV-----------GLTGFNCR-CGNLFC 141 (179)
Q Consensus 116 ~~~rC~~C~kk~-----------gl~gf~Cr-Cg~~FC 141 (179)
.+-.|..|+|.. |-..|.|. ||..|-
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 356788888742 22358887 877774
No 78
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.66 E-value=67 Score=19.92 Aligned_cols=27 Identities=26% Similarity=0.773 Sum_probs=18.0
Q ss_pred CCCcccccccccCc--------------cceeee-cCccccC
Q 030304 116 GPKRCTTCNKRVGL--------------TGFNCR-CGNLFCA 142 (179)
Q Consensus 116 ~~~rC~~C~kk~gl--------------~gf~Cr-Cg~~FC~ 142 (179)
.+-.|..|++.... ..|.|. ||..|-.
T Consensus 17 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 46788888876542 147787 7776654
No 79
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=29.47 E-value=24 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.815 Sum_probs=6.9
Q ss_pred ceeee-cCcccc
Q 030304 131 GFNCR-CGNLFC 141 (179)
Q Consensus 131 gf~Cr-Cg~~FC 141 (179)
.|.|. ||..|-
T Consensus 29 ~~~C~~C~~~f~ 40 (57)
T 1bbo_A 29 PYHCTYCNFSFK 40 (57)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhc
Confidence 47776 666664
No 80
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.45 E-value=17 Score=23.24 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=17.5
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|....|.=+=|..||..|
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~c 60 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPC 60 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHH
Confidence 456777777766566666666666543
No 81
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=28.97 E-value=17 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=14.0
Q ss_pred cccccccccCccceeeecCccccCc
Q 030304 119 RCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 119 rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
+|..|++.|....|.=+=|..||..
T Consensus 36 ~C~~C~~~L~~~~~~~~~~~~yC~~ 60 (81)
T 1a7i_A 36 LCMVCRKNLDSTTVAIHDAEVYCKS 60 (81)
T ss_dssp ECSSSCCEECSSCCEEETTEEECSH
T ss_pred ccCCCCCCCCCCCeEeeCCEEECHH
Confidence 4556666665555555555555544
No 82
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.61 E-value=18 Score=24.47 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=6.7
Q ss_pred CCccccccccc
Q 030304 117 PKRCTTCNKRV 127 (179)
Q Consensus 117 ~~rC~~C~kk~ 127 (179)
..+|..|++.|
T Consensus 25 ~~~C~~C~~~I 35 (90)
T 2dar_A 25 TPMCAHCNQVI 35 (90)
T ss_dssp CCBBSSSCCBC
T ss_pred CCCCccCCCEe
Confidence 45666666655
No 83
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.56 E-value=16 Score=17.66 Aligned_cols=11 Identities=27% Similarity=0.978 Sum_probs=6.6
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 5565 6666654
No 84
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.49 E-value=22 Score=27.55 Aligned_cols=30 Identities=20% Similarity=0.530 Sum_probs=25.1
Q ss_pred CCCcccccccccCcc---ceeee-cCccccCccc
Q 030304 116 GPKRCTTCNKRVGLT---GFNCR-CGNLFCAVHR 145 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~---gf~Cr-Cg~~FC~~HR 145 (179)
....|..|.+.+|++ |..|. |...+|..=+
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 357899999999986 78898 9999998644
No 85
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.44 E-value=17 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=15.2
Q ss_pred CcccccccccCccceeeecCccccCc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
-+|..|++.|....|.=+=|..||..
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~ 57 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLN 57 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHH
Confidence 45667777775555555545555544
No 86
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.04 E-value=18 Score=23.71 Aligned_cols=27 Identities=19% Similarity=0.615 Sum_probs=18.4
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|....|.=+=|..||..|
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~c 70 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTC 70 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHH
Confidence 467788888776666666666776554
No 87
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=27.70 E-value=34 Score=23.22 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=19.3
Q ss_pred CCCcccccccccCcc--------------ceeee-cCccccCc
Q 030304 116 GPKRCTTCNKRVGLT--------------GFNCR-CGNLFCAV 143 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~--------------gf~Cr-Cg~~FC~~ 143 (179)
.+-.|..|+|..... .|.|. ||..|-..
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 356788998865432 58897 88887543
No 88
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.68 E-value=28 Score=24.35 Aligned_cols=31 Identities=29% Similarity=0.780 Sum_probs=25.0
Q ss_pred CCCcccccccccCcc---ceeee-cCccccCcccc
Q 030304 116 GPKRCTTCNKRVGLT---GFNCR-CGNLFCAVHRY 146 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~---gf~Cr-Cg~~FC~~HRy 146 (179)
..++|..|...||++ |..|+ |-+.-|..=|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv 58 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRI 58 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEE
T ss_pred CccchhhhCccccccccCCCcCcccChhhcccccc
Confidence 468999999999996 78898 87777766553
No 89
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.66 E-value=25 Score=20.42 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=6.4
Q ss_pred CCccccccccc
Q 030304 117 PKRCTTCNKRV 127 (179)
Q Consensus 117 ~~rC~~C~kk~ 127 (179)
+-.|..|++..
T Consensus 4 ~~~C~~C~~~f 14 (57)
T 3uk3_C 4 SRECSYCGKFF 14 (57)
T ss_dssp -CBCTTTCCBC
T ss_pred CccCCCCcchh
Confidence 45677777654
No 90
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=27.38 E-value=28 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.927 Sum_probs=6.7
Q ss_pred ceeee-cCcccc
Q 030304 131 GFNCR-CGNLFC 141 (179)
Q Consensus 131 gf~Cr-Cg~~FC 141 (179)
.|.|. ||..|-
T Consensus 30 ~~~C~~C~~~f~ 41 (60)
T 2adr_A 30 PYPCGLCNRAFT 41 (60)
T ss_dssp SEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 46776 666654
No 91
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.19 E-value=9.8 Score=25.18 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=9.7
Q ss_pred cccccccccCccceeeecCcccc
Q 030304 119 RCTTCNKRVGLTGFNCRCGNLFC 141 (179)
Q Consensus 119 rC~~C~kk~gl~gf~CrCg~~FC 141 (179)
+|..|++.|....|.=+=|..||
T Consensus 43 ~C~~C~~~L~~~~~~~~~g~~yC 65 (79)
T 1x62_A 43 VCTDCGTNLKQKGHFFVEDQIYC 65 (79)
T ss_dssp SCSSSCCCHHHHCCEESSSCEEC
T ss_pred eeCCCCCCCCCCCeEeECCEEEC
Confidence 34445554433334333344444
No 92
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.07 E-value=18 Score=17.68 Aligned_cols=11 Identities=36% Similarity=1.207 Sum_probs=7.4
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 6676 7777754
No 93
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.04 E-value=18 Score=17.70 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=6.6
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 5666 6666643
No 94
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.97 E-value=17 Score=17.78 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=6.5
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 5666 6666643
No 95
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=26.89 E-value=18 Score=24.12 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=19.8
Q ss_pred CCCcccccccccCccceeee-cCcc
Q 030304 116 GPKRCTTCNKRVGLTGFNCR-CGNL 139 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~Cr-Cg~~ 139 (179)
...-|..|..++....-.|| ||+.
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 45678999999999999999 8743
No 96
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.89 E-value=18 Score=17.64 Aligned_cols=11 Identities=36% Similarity=1.213 Sum_probs=7.0
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 6666 7776653
No 97
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.78 E-value=47 Score=21.16 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=18.5
Q ss_pred CCcccccccccCccceee-ecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNC-RCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~C-rCg~~FC~~ 143 (179)
...|..|...+.- ...- .||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~ 41 (72)
T 2djb_A 15 YILCSICKGYLID-ATTITECLHTFCKS 41 (72)
T ss_dssp GGSCTTTSSCCSS-CEECSSSCCEECHH
T ss_pred CCCCCCCChHHHC-cCEECCCCCHHHHH
Confidence 4679999765543 3444 799999975
No 98
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.45 E-value=34 Score=21.16 Aligned_cols=28 Identities=25% Similarity=0.682 Sum_probs=18.8
Q ss_pred CCCcccccccccCccc------eeeecCccccCc
Q 030304 116 GPKRCTTCNKRVGLTG------FNCRCGNLFCAV 143 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~g------f~CrCg~~FC~~ 143 (179)
....|..|...+.... ..-.||++||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 47 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 47 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHH
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHH
Confidence 3567999987654321 455799999864
No 99
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.42 E-value=47 Score=20.71 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCCcccccccccCccceeeecCccccCc--ccc--CCCCCCccc
Q 030304 116 GPKRCTTCNKRVGLTGFNCRCGNLFCAV--HRY--SDKHGCPFD 155 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~CrCg~~FC~~--HRy--~~~H~C~fD 155 (179)
....|..|...+.- ...-.||++||.. .++ .....|+..
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~C 56 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS-PKQTECGHRFCESCMAALLSSSSPKCTAC 56 (66)
T ss_dssp CCEECTTTCCEESS-CCCCSSSCCCCHHHHHHHHTTSSCCCTTT
T ss_pred cCCCCCCCChHhcC-eeECCCCCHHHHHHHHHHHHhCcCCCCCC
Confidence 35679999866543 3445899999975 322 233456654
No 100
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.37 E-value=14 Score=17.96 Aligned_cols=12 Identities=33% Similarity=1.035 Sum_probs=8.0
Q ss_pred eeee-cCccccCc
Q 030304 132 FNCR-CGNLFCAV 143 (179)
Q Consensus 132 f~Cr-Cg~~FC~~ 143 (179)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 6676 77777654
No 101
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=26.32 E-value=41 Score=23.84 Aligned_cols=26 Identities=23% Similarity=0.644 Sum_probs=19.1
Q ss_pred CCcccccccccCccceeee---cCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCR---CGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~Cr---Cg~~FC~~ 143 (179)
..+|..|.+. +..-+.|- ||+++|++
T Consensus 25 ~~~C~~C~~~-~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQ-GPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCC-CSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCC-CCCceeeecccCCCcccCC
Confidence 4689999843 22226887 99999987
No 102
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.06 E-value=24 Score=18.19 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=6.9
Q ss_pred ceeee-cCccccC
Q 030304 131 GFNCR-CGNLFCA 142 (179)
Q Consensus 131 gf~Cr-Cg~~FC~ 142 (179)
.|.|. ||..|-.
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 46666 6666543
No 103
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.97 E-value=25 Score=18.51 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=6.9
Q ss_pred ceeee-cCccccC
Q 030304 131 GFNCR-CGNLFCA 142 (179)
Q Consensus 131 gf~Cr-Cg~~FC~ 142 (179)
.|.|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elo_A 9 SYSCPVCEKSFSE 21 (37)
T ss_dssp CCEETTTTEECSS
T ss_pred CcCCCCCCCccCC
Confidence 46666 6666543
No 104
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.84 E-value=18 Score=24.48 Aligned_cols=25 Identities=28% Similarity=0.854 Sum_probs=11.8
Q ss_pred cccccccccCccceeeecCccccCc
Q 030304 119 RCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 119 rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
+|..|++.|....|.=+=|..||..
T Consensus 44 ~C~~C~~~L~~~~~~~~~g~~yC~~ 68 (91)
T 2d8y_A 44 RCSYCNNKLSLGTYASLHGRIYCKP 68 (91)
T ss_dssp BCTTTCCBCCTTTCCCSSSCCCCHH
T ss_pred eeCCCCCCCCCCCcEeECCEEECHH
Confidence 4455555554443444444444443
No 105
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.76 E-value=19 Score=17.84 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=6.9
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 6676 7666643
No 106
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.57 E-value=33 Score=25.94 Aligned_cols=27 Identities=26% Similarity=0.823 Sum_probs=23.2
Q ss_pred CCcccccccccCcc---ceeee-cCccccCc
Q 030304 117 PKRCTTCNKRVGLT---GFNCR-CGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~---gf~Cr-Cg~~FC~~ 143 (179)
...|..|.+.+|++ |..|. |...+|..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~ 85 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTK 85 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETT
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccc
Confidence 47899999999975 67888 99999986
No 107
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=25.52 E-value=53 Score=21.14 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=19.6
Q ss_pred CCCcccccccccCccceeee-cCccccCc
Q 030304 116 GPKRCTTCNKRVGLTGFNCR-CGNLFCAV 143 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~Cr-Cg~~FC~~ 143 (179)
..-.|..|...+. ....-. ||++||..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 14 DELLCLICKDIMT-DAVVIPCCGNSYCDE 41 (74)
T ss_dssp GGGSCSSSCCCCT-TCEECSSSCCEECTT
T ss_pred CCCCCcCCChHHh-CCeEcCCCCCHHHHH
Confidence 3568999976553 345567 99999986
No 108
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.07 E-value=19 Score=17.46 Aligned_cols=11 Identities=45% Similarity=1.313 Sum_probs=6.8
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 5666 6666653
No 109
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.00 E-value=96 Score=19.68 Aligned_cols=26 Identities=19% Similarity=0.547 Sum_probs=18.8
Q ss_pred CCcccccccccCccceeeecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
...|..|...+.- .....||++||..
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 44 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCRA 44 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCHH
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHHH
Confidence 4679999876533 3456799999975
No 110
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=24.93 E-value=26 Score=24.51 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCcccccccccCccceeeecCccccCc--cccCCC--CCCc---ccchHHHHHHHH
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV--HRYSDK--HGCP---FDYRTAAREAIA 165 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~--HRy~~~--H~C~---fDyk~~gre~l~ 165 (179)
.-.|..|...+-- ...-.||++||.. .++-+. ..|. ..+....+..+.
T Consensus 15 ~~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (115)
T 3l11_A 15 ECQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTR 69 (115)
T ss_dssp HHBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHH
T ss_pred CCCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCcccccccc
Confidence 4679999866543 3334899999976 444432 3455 444443333333
No 111
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=24.73 E-value=27 Score=18.34 Aligned_cols=10 Identities=40% Similarity=1.172 Sum_probs=4.9
Q ss_pred eeee-cCcccc
Q 030304 132 FNCR-CGNLFC 141 (179)
Q Consensus 132 f~Cr-Cg~~FC 141 (179)
|.|. ||..|-
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 4454 555453
No 112
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.73 E-value=22 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=16.7
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|.-..|.=+=|..||..|
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~c 73 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPDC 73 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChHH
Confidence 456677777765556555566666543
No 113
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.62 E-value=48 Score=20.41 Aligned_cols=26 Identities=31% Similarity=0.847 Sum_probs=15.9
Q ss_pred CCCcccccccccCc--------------cceeee-cCcccc
Q 030304 116 GPKRCTTCNKRVGL--------------TGFNCR-CGNLFC 141 (179)
Q Consensus 116 ~~~rC~~C~kk~gl--------------~gf~Cr-Cg~~FC 141 (179)
.+-.|..|.+.... ..|.|. |+..|-
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 45678888775432 247776 666554
No 114
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.51 E-value=65 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=18.8
Q ss_pred CCcccccccccCccceeeecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
...|..|...+.- ...-.||++||..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~CgH~fC~~ 40 (81)
T 2csy_A 15 PFRCFICRQAFQN-PVVTKCRHYFCES 40 (81)
T ss_dssp CSBCSSSCSBCCS-EEECTTSCEEEHH
T ss_pred CCCCcCCCchhcC-eeEccCCCHhHHH
Confidence 4679999876633 3456799999864
No 115
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.34 E-value=19 Score=17.75 Aligned_cols=12 Identities=25% Similarity=0.839 Sum_probs=7.6
Q ss_pred eeee-cCccccCc
Q 030304 132 FNCR-CGNLFCAV 143 (179)
Q Consensus 132 f~Cr-Cg~~FC~~ 143 (179)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 5666 77777543
No 116
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=24.27 E-value=27 Score=18.10 Aligned_cols=12 Identities=42% Similarity=0.924 Sum_probs=6.9
Q ss_pred ceeee-cCccccC
Q 030304 131 GFNCR-CGNLFCA 142 (179)
Q Consensus 131 gf~Cr-Cg~~FC~ 142 (179)
.|.|. ||..|-.
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 1srk_A 7 PFVCRICLSAFTT 19 (35)
T ss_dssp CEECSSSCCEESS
T ss_pred CeeCCCCCcccCC
Confidence 46666 6666643
No 117
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.24 E-value=19 Score=17.53 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=6.3
Q ss_pred eeee-cCccccC
Q 030304 132 FNCR-CGNLFCA 142 (179)
Q Consensus 132 f~Cr-Cg~~FC~ 142 (179)
|.|. ||..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 5565 6666643
No 118
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.04 E-value=29 Score=23.63 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.2
Q ss_pred CCccccccccc
Q 030304 117 PKRCTTCNKRV 127 (179)
Q Consensus 117 ~~rC~~C~kk~ 127 (179)
+-.|..|+|..
T Consensus 34 ~~~C~~C~k~F 44 (96)
T 2ctd_A 34 SVSCPTCQAVG 44 (96)
T ss_dssp CEECTTTCSCE
T ss_pred CcCCCCCCCCc
Confidence 45677777665
No 119
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=23 Score=23.77 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=19.0
Q ss_pred CCCcccccccccC-c--cceeee-cCccc
Q 030304 116 GPKRCTTCNKRVG-L--TGFNCR-CGNLF 140 (179)
Q Consensus 116 ~~~rC~~C~kk~g-l--~gf~Cr-Cg~~F 140 (179)
.+..|..|++.|= | .|++|+ |+.+.
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~ 55 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNI 55 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEE
T ss_pred CCcCchhcChhhccccCCccccCCCCCcc
Confidence 5688999999873 3 489999 76553
No 120
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=23.77 E-value=77 Score=20.70 Aligned_cols=28 Identities=18% Similarity=0.528 Sum_probs=20.2
Q ss_pred CCCCcccccccccCc--------------cceeee-cCccccC
Q 030304 115 EGPKRCTTCNKRVGL--------------TGFNCR-CGNLFCA 142 (179)
Q Consensus 115 ~~~~rC~~C~kk~gl--------------~gf~Cr-Cg~~FC~ 142 (179)
..+-.|..|++.... ..|.|. |+..|-.
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRR 57 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSC
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCC
Confidence 346789999887642 248898 9988865
No 121
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.48 E-value=22 Score=23.78 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=9.7
Q ss_pred CCCcccccccccC
Q 030304 116 GPKRCTTCNKRVG 128 (179)
Q Consensus 116 ~~~rC~~C~kk~g 128 (179)
.+-.|..|.|...
T Consensus 23 ~~~~C~~C~k~f~ 35 (98)
T 2gqj_A 23 GEAVCPTCNVVTR 35 (98)
T ss_dssp SCCCCTTTCCCCS
T ss_pred CCcCCCCCCCChh
Confidence 4577888888776
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.41 E-value=36 Score=21.98 Aligned_cols=25 Identities=24% Similarity=0.623 Sum_probs=19.3
Q ss_pred CcccccccccCccceeeecCccccC
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCA 142 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~ 142 (179)
-+|..|++.|....|.=+=|..||.
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~ 52 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCN 52 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEET
T ss_pred CCccccCccCCCCceECcCCeEeeC
Confidence 5678888888776677777778886
No 123
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.23 E-value=25 Score=16.93 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=7.0
Q ss_pred eeee-cCccccCc
Q 030304 132 FNCR-CGNLFCAV 143 (179)
Q Consensus 132 f~Cr-Cg~~FC~~ 143 (179)
|.|. ||..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5565 66666543
No 124
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=23.15 E-value=21 Score=25.24 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=10.8
Q ss_pred cceeeecCccccCc
Q 030304 130 TGFNCRCGNLFCAV 143 (179)
Q Consensus 130 ~gf~CrCg~~FC~~ 143 (179)
.-+.||||..|--.
T Consensus 22 y~ypCrCGd~F~it 35 (83)
T 1yop_A 22 FTYPCPCGDRFQIY 35 (83)
T ss_dssp EEEEETTTEEEEEE
T ss_pred EEEeCCCCCeEEEC
Confidence 45889999988544
No 125
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.77 E-value=26 Score=22.84 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=17.3
Q ss_pred CcccccccccCccceeeecCccccCcc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAVH 144 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~H 144 (179)
-+|..|++.|....|.=+=|..||..|
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~~ 68 (80)
T 1x3h_A 42 FVCGDCFTSFSTGSFFELDGRPFCELH 68 (80)
T ss_dssp CBCSSSCCBSCSSCCEESSSCEECHHH
T ss_pred CChhhCCCCCCCCcEEeECCEEECHHH
Confidence 467788887765556555566666554
No 126
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.41 E-value=25 Score=17.16 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=7.4
Q ss_pred eeee-cCccccCc
Q 030304 132 FNCR-CGNLFCAV 143 (179)
Q Consensus 132 f~Cr-Cg~~FC~~ 143 (179)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 5666 77766543
No 127
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.71 E-value=19 Score=17.80 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.0
Q ss_pred eeee-cCccccCc
Q 030304 132 FNCR-CGNLFCAV 143 (179)
Q Consensus 132 f~Cr-Cg~~FC~~ 143 (179)
|.|. ||..|-..
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 6676 77777654
No 128
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.06 E-value=42 Score=20.49 Aligned_cols=12 Identities=25% Similarity=0.919 Sum_probs=7.7
Q ss_pred CCCccccccccc
Q 030304 116 GPKRCTTCNKRV 127 (179)
Q Consensus 116 ~~~rC~~C~kk~ 127 (179)
.+-.|..|.|..
T Consensus 8 ~~~~C~~C~k~f 19 (70)
T 1x5w_A 8 HPEKCSECSYSC 19 (70)
T ss_dssp CSEECSSSSCEE
T ss_pred CCeECCCCCccc
Confidence 356777777654
No 129
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.06 E-value=36 Score=17.90 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=7.3
Q ss_pred ceeee-cCccccC
Q 030304 131 GFNCR-CGNLFCA 142 (179)
Q Consensus 131 gf~Cr-Cg~~FC~ 142 (179)
.|.|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 46666 6666644
No 130
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.03 E-value=28 Score=22.02 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=15.1
Q ss_pred CcccccccccCccceeeecCccccCc
Q 030304 118 KRCTTCNKRVGLTGFNCRCGNLFCAV 143 (179)
Q Consensus 118 ~rC~~C~kk~gl~gf~CrCg~~FC~~ 143 (179)
-+|..|++.|.-..|.=+=|..||..
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~ 57 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVD 57 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHH
Confidence 45667777776444544445555544
No 131
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=31 Score=17.88 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=6.1
Q ss_pred ceeee-cCcccc
Q 030304 131 GFNCR-CGNLFC 141 (179)
Q Consensus 131 gf~Cr-Cg~~FC 141 (179)
.|.|. ||..|-
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 35665 655554
No 132
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=21.43 E-value=21 Score=26.90 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=23.4
Q ss_pred CCCCCCccccccc----ccCccceeee-cCccccCcc
Q 030304 113 AKEGPKRCTTCNK----RVGLTGFNCR-CGNLFCAVH 144 (179)
Q Consensus 113 ~~~~~~rC~~C~k----k~gl~gf~Cr-Cg~~FC~~H 144 (179)
.+..+-.|..|+| +++.--.+|+ ||.+|-+-=
T Consensus 56 ~q~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 56 EMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred HhccCCcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 3456789999998 3332248999 999998863
No 133
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.38 E-value=35 Score=18.20 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=8.0
Q ss_pred ceeee-cCccccC
Q 030304 131 GFNCR-CGNLFCA 142 (179)
Q Consensus 131 gf~Cr-Cg~~FC~ 142 (179)
.|.|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 47777 7776654
No 134
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=21.19 E-value=24 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.789 Sum_probs=10.1
Q ss_pred ccceeeecCcccc
Q 030304 129 LTGFNCRCGNLFC 141 (179)
Q Consensus 129 l~gf~CrCg~~FC 141 (179)
..-+.||||..|-
T Consensus 21 ~y~ypCrCGd~F~ 33 (89)
T 2jr7_A 21 TYFYPCPCGDNFS 33 (89)
T ss_dssp EEEEECTTSSEEE
T ss_pred EEEEcCCCCCEEE
Confidence 3458899999884
No 135
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=21.06 E-value=33 Score=23.14 Aligned_cols=36 Identities=31% Similarity=0.817 Sum_probs=22.8
Q ss_pred CcccccccccCcc---ceeeecCccccCc--cccC--CCCCCc
Q 030304 118 KRCTTCNKRVGLT---GFNCRCGNLFCAV--HRYS--DKHGCP 153 (179)
Q Consensus 118 ~rC~~C~kk~gl~---gf~CrCg~~FC~~--HRy~--~~H~C~ 153 (179)
..|..|--.+.+. -+.|.||+.||.. +++. ....|+
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP 54 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP 54 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCC
Confidence 4588888766443 3458899999964 4443 233454
No 136
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=47 Score=21.81 Aligned_cols=24 Identities=25% Similarity=0.791 Sum_probs=20.1
Q ss_pred CCcccccccccCccceeee-cCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNCR-CGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~Cr-Cg~~FC~~ 143 (179)
...|..|+. ..-|+|- |+.-||+.
T Consensus 12 ~~~C~vC~~---~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 12 TVVCVICLE---KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCCTTTCS---CCSEECTTTCCEESSH
T ss_pred CCccCcCcC---CCeeeCCCCCCCeeCH
Confidence 457999987 5679997 99999996
No 137
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=34 Score=17.85 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=6.9
Q ss_pred ceeee-cCccccC
Q 030304 131 GFNCR-CGNLFCA 142 (179)
Q Consensus 131 gf~Cr-Cg~~FC~ 142 (179)
.|.|. ||..|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elv_A 9 LYDCHICERKFKN 21 (36)
T ss_dssp CEECSSSCCEESS
T ss_pred CeECCCCCCccCC
Confidence 46666 6666643
No 138
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.82 E-value=25 Score=24.38 Aligned_cols=31 Identities=16% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCCCCCccccccc-ccCcc--c-eeee-cCccccCc
Q 030304 113 AKEGPKRCTTCNK-RVGLT--G-FNCR-CGNLFCAV 143 (179)
Q Consensus 113 ~~~~~~rC~~C~k-k~gl~--g-f~Cr-Cg~~FC~~ 143 (179)
.+..+-.|..|+| +|.-. | -.|+ |+.+|-+-
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECCCCCcEEECC
Confidence 3456789999997 33222 3 7899 99998765
No 139
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.73 E-value=69 Score=19.58 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCcccccccccCccceeeecCccccCccccCCCCCCccc
Q 030304 117 PKRCTTCNKRVGLTGFNCRCGNLFCAVHRYSDKHGCPFD 155 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~CrCg~~FC~~HRy~~~H~C~fD 155 (179)
..+|..|...+.-. ..=.||++||..-.......|++-
T Consensus 6 ~~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~CP~C 43 (56)
T 1bor_A 6 FLRCQQCQAEAKCP-KLLPCLHTLCSGCLEASGMQCPIC 43 (56)
T ss_dssp CSSCSSSCSSCBCC-SCSTTSCCSBTTTCSSSSSSCSSC
T ss_pred CCCceEeCCccCCe-EEcCCCCcccHHHHccCCCCCCcC
Confidence 45688887655332 334599999987554445566654
No 140
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=20.41 E-value=32 Score=25.69 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=19.0
Q ss_pred CCcccccccccCccceee-ecCccccCc
Q 030304 117 PKRCTTCNKRVGLTGFNC-RCGNLFCAV 143 (179)
Q Consensus 117 ~~rC~~C~kk~gl~gf~C-rCg~~FC~~ 143 (179)
.-.|..|...+.- .... .||++||..
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~ 80 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKECLHRFCAD 80 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETTTCCEEEHH
T ss_pred CCCCcccChHhhC-cCEeCCCCChhHHH
Confidence 4589999766543 4555 899999975
No 141
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=20.31 E-value=64 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=17.5
Q ss_pred CCCcccccccccCccceeee-cCccc
Q 030304 116 GPKRCTTCNKRVGLTGFNCR-CGNLF 140 (179)
Q Consensus 116 ~~~rC~~C~kk~gl~gf~Cr-Cg~~F 140 (179)
....|..|.--..-.=|.|| |+.+|
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 45678888754444458899 88887
Done!