BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030305
         (179 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3BDI7|DSG1_PIG Desmoglein-1 OS=Sus scrofa GN=DSG1 PE=2 SV=1
          Length = 1045

 Score = 35.8 bits (81), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 78  LQSQSHVGVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRV 137
           L   S  G+I         Q   +  +Y   ++SID     T TG I +  EG+G+  R 
Sbjct: 433 LAIDSKTGIITLRNKVTREQYNLLGKKYQGTILSIDDALQRTCTGTINIDLEGSGWEDRQ 492

Query: 138 ANGCDSGDRPVYKSNPATNDWIPSVEY 164
            +G  +G   +     +TND+ PS EY
Sbjct: 493 TDGAVTGGGTI----TSTNDFTPSYEY 515


>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
           GN=NSUN2 PE=2 SV=1
          Length = 796

 Score = 31.6 bits (70), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 13  KPSRSDEVLDAVEQVRIA-NRVRAQIDSMAPKRPTKPNRSEPDSIAPTNDQSAANGN 68
           +P++++E +D  ++ R A  ++ A+ID  +P+ P + +  E ++ +  +DQ + N N
Sbjct: 723 RPAQTEEGMDVEDKERDAVTKMEAEIDEESPRSPVESSAMEIENKSEDSDQCSKNTN 779


>sp|Q1WVE0|Y162_LACS1 UPF0210 protein LSL_0162 OS=Lactobacillus salivarius (strain
           UCC118) GN=LSL_0162 PE=3 SV=1
          Length = 447

 Score = 30.4 bits (67), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 105 YYKQLVSIDKDHHTTGTGFIRVANEGNGYNIRVANGCDSGDRPVYKSNP 153
           Y K   ++DK   T G  FI       GY+  V  G  +GDR + KS P
Sbjct: 92  YVKYAKALDKAAQTLGIDFI------GGYSALVQKGYQNGDRTLIKSLP 134


>sp|Q1IIL2|AROC_KORVE Chorismate synthase OS=Koribacter versatilis (strain Ellin345)
           GN=aroC PE=3 SV=1
          Length = 393

 Score = 30.4 bits (67), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 77  SLQSQSHV----GVIYSAEVNNTAQDEFVETQYYKQLVSIDKDHHTTGTGFIRVANEGNG 132
           SLQ+   V    GV  +A   + AQDE          +  +++H +  TGF R +N   G
Sbjct: 249 SLQAVKAVEIGEGVSVAATFGSGAQDE----------IGYEREHESKFTGFTRTSNHAGG 298

Query: 133 YNIRVANGCD 142
               V+NG D
Sbjct: 299 IEGGVSNGQD 308


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.128    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,690,897
Number of Sequences: 539616
Number of extensions: 2839648
Number of successful extensions: 5387
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5379
Number of HSP's gapped (non-prelim): 19
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)