Query 030305
Match_columns 179
No_of_seqs 31 out of 33
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 18:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fcg_F Cationic, antibacterial 33.6 28 0.00094 20.7 2.2 18 27-44 6-23 (26)
2 1s0p_A CAP, adenylyl cyclase-a 32.1 7.2 0.00025 31.5 -0.7 17 106-122 148-164 (176)
3 1vl0_A DTDP-4-dehydrorhamnose 30.2 9.7 0.00033 29.4 -0.3 8 118-125 18-25 (292)
4 3t0y_B NEPR; sigma factor, ant 29.4 7.6 0.00026 27.6 -0.9 38 4-41 3-46 (68)
5 1bb1_B Designed, thermostable 26.0 32 0.0011 21.5 1.6 19 23-41 8-26 (36)
6 2lma_A THP5 peptide; CD4+, imm 25.8 22 0.00077 20.9 0.8 16 99-114 3-18 (26)
7 2k6o_A Cathelicidin antimicrob 24.9 55 0.0019 20.8 2.6 20 24-43 15-34 (37)
8 3swo_A Glutaryl-COA dehydrogen 21.7 30 0.001 28.8 1.2 35 7-42 1-47 (399)
9 3lay_A Zinc resistance-associa 20.1 25 0.00085 28.1 0.3 26 19-44 66-91 (175)
10 3trt_A Vimentin; cytoskeleton, 18.8 40 0.0014 22.6 1.1 17 27-43 8-24 (77)
No 1
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=33.64 E-value=28 Score=20.73 Aligned_cols=18 Identities=22% Similarity=0.589 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhcCCCC
Q 030305 27 VRIANRVRAQIDSMAPKR 44 (179)
Q Consensus 27 ~~i~~evRa~FD~~APKR 44 (179)
.+|-..||.+|-.++|+-
T Consensus 6 kkIgQkIkdFf~~l~prt 23 (26)
T 2fcg_F 6 KRIVQRIKDFLRNLVPRT 23 (26)
T ss_dssp HHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 578889999999999963
No 2
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=32.14 E-value=7.2 Score=31.50 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=14.4
Q ss_pred hcccccccccCCCCCcc
Q 030305 106 YKQLVSIDKDHHTTGTG 122 (179)
Q Consensus 106 YkdL~~IDKqHHTTGtG 122 (179)
|++|-.-=|+|||||--
T Consensus 148 ~~~L~~YVK~~httGl~ 164 (176)
T 1s0p_A 148 LKDLEKYIKQYHTTGLT 164 (176)
T ss_dssp HHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 78888888999999943
No 3
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=30.23 E-value=9.7 Score=29.35 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=5.7
Q ss_pred CCCccceE
Q 030305 118 TTGTGFIR 125 (179)
Q Consensus 118 TTGtGFIK 125 (179)
|-|||||=
T Consensus 18 tGatG~iG 25 (292)
T 1vl0_A 18 TGANGQLG 25 (292)
T ss_dssp ESTTSHHH
T ss_pred ECCCChHH
Confidence 45789983
No 4
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=29.40 E-value=7.6 Score=27.65 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=14.6
Q ss_pred ecccceeecCCCCccc----ccCHH--HHHHHHHHHHHhhhhcC
Q 030305 4 AGVDQWTVTKPSRSDE----VLDAV--EQVRIANRVRAQIDSMA 41 (179)
Q Consensus 4 ~~vg~m~~~kPsRSDe----~L~~E--eq~~i~~evRa~FD~~A 41 (179)
.||+.|--++|+-++. -|... .|.+|..++|++||.++
T Consensus 3 ~g~~~mi~~~~~~~~~~~~~~l~e~~~rQ~~IG~~LR~~Yd~vv 46 (68)
T 3t0y_B 3 FGVEDMIEHVPMEDKRKGAAALDEARLRQQAIGVKLRQMFDEVV 46 (68)
T ss_dssp ---------------------------CCCHHHHHHHHHTHHHH
T ss_pred ccHhhhccCCCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 4666676566654443 34444 45889999999999875
No 5
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=26.01 E-value=32 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhcC
Q 030305 23 AVEQVRIANRVRAQIDSMA 41 (179)
Q Consensus 23 ~Eeq~~i~~evRa~FD~~A 41 (179)
-|||+.|+++|.+--+.+|
T Consensus 8 keeqaaieeeiqaikeeia 26 (36)
T 1bb1_B 8 KEEQAAIEEEIQAIKEEIA 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3899999999988665543
No 6
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=25.83 E-value=22 Score=20.91 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=12.7
Q ss_pred hhhhhhhhcccccccc
Q 030305 99 EFVETQYYKQLVSIDK 114 (179)
Q Consensus 99 EFVETeYYkdL~~IDK 114 (179)
-|+.||||.-+.-|.-
T Consensus 3 pylqteyydvmtvisp 18 (26)
T 2lma_A 3 PYLQTEYYDVMTVISP 18 (26)
T ss_dssp TTHHHHHHTTSTTSSG
T ss_pred ccccceeeeeEEEeCC
Confidence 3789999998887753
No 7
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=24.88 E-value=55 Score=20.84 Aligned_cols=20 Identities=25% Similarity=0.523 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhcCCC
Q 030305 24 VEQVRIANRVRAQIDSMAPK 43 (179)
Q Consensus 24 Eeq~~i~~evRa~FD~~APK 43 (179)
+.-.+|-..|+++|-.++|+
T Consensus 15 ~~~kkIgQkIKdFf~~l~pr 34 (37)
T 2k6o_A 15 KEFKRIVQRIKDFLRNLVPR 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhhCcc
Confidence 45568999999999999996
No 8
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=21.70 E-value=30 Score=28.84 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=17.2
Q ss_pred cceeecCCCCccc-----------ccCHHHHHHHHHHHHHhhhh-cCC
Q 030305 7 DQWTVTKPSRSDE-----------VLDAVEQVRIANRVRAQIDS-MAP 42 (179)
Q Consensus 7 g~m~~~kPsRSDe-----------~L~~Eeq~~i~~evRa~FD~-~AP 42 (179)
|-|+.+.|.+++- .|+ +||..+.+.+|++++. ++|
T Consensus 1 ~~m~~~~~~~~~~~~~~~~~~m~~~l~-~e~~~l~~~~r~~~~~~~~~ 47 (399)
T 3swo_A 1 GSMTLTAPSKKSTYAPLELFDTDRLLD-QDERDIAATVRQFVDTRLKP 47 (399)
T ss_dssp ----------CCCCCHHHHHTGGGGSC-HHHHHHHHHHHHHHHHHTHH
T ss_pred CCcCccCCCcCccccccccccCCCCCC-HHHHHHHHHHHHHHHHhCCh
Confidence 5677777766433 344 5667788999999988 544
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.11 E-value=25 Score=28.14 Aligned_cols=26 Identities=12% Similarity=0.032 Sum_probs=20.7
Q ss_pred cccCHHHHHHHHHHHHHhhhhcCCCC
Q 030305 19 EVLDAVEQVRIANRVRAQIDSMAPKR 44 (179)
Q Consensus 19 e~L~~Eeq~~i~~evRa~FD~~APKR 44 (179)
--|++|||+++.+-..+|+..+.|.|
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr 91 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALR 91 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998876643
No 10
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=18.82 E-value=40 Score=22.59 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhhcCCC
Q 030305 27 VRIANRVRAQIDSMAPK 43 (179)
Q Consensus 27 ~~i~~evRa~FD~~APK 43 (179)
.+|=++||++||.+|-|
T Consensus 8 ~~il~eiRaQYE~ia~k 24 (77)
T 3trt_A 8 TAAMRDVRQQYESVAAK 24 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678999999998854
Done!