Query 030305
Match_columns 179
No_of_seqs 31 out of 33
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 18:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nb5i_ d.17.1.2 (I:) Cystatin 55.7 3.3 0.00024 29.2 2.5 33 4-43 1-33 (98)
2 d1stfi_ d.17.1.2 (I:) Cystatin 45.8 3.9 0.00028 28.7 1.5 33 4-43 1-33 (98)
3 d1s0pa_ a.192.1.1 (A:) N-termi 33.0 2.6 0.00019 32.2 -1.2 19 105-123 147-165 (176)
4 d1ie9a_ a.123.1.1 (A:) Vitamin 17.2 73 0.0053 23.5 4.4 24 20-43 6-29 (255)
5 d1jila_ c.26.1.1 (A:) Tyrosyl- 17.0 52 0.0038 26.2 3.7 40 2-41 66-110 (323)
6 d1jqia2 e.6.1.1 (A:4-234) Buty 17.0 44 0.0032 23.7 3.0 23 20-43 6-29 (231)
7 d2foka1 a.4.5.12 (A:5-143) Res 16.9 25 0.0018 26.1 1.5 17 121-137 113-129 (139)
8 d1zfoa_ g.39.1.4 (A:) LASP-1 { 16.0 23 0.0017 20.2 0.9 13 107-119 16-28 (30)
9 d2gf3a2 d.16.1.3 (A:218-321) S 15.7 79 0.0057 20.3 3.8 31 13-43 59-91 (104)
10 d2i9wa2 g.74.1.1 (A:1-39) Hypo 15.4 25 0.0018 20.9 1.0 12 147-158 8-19 (39)
No 1
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.70 E-value=3.3 Score=29.25 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=25.7
Q ss_pred ecccceeecCCCCcccccCHHHHHHHHHHHHHhhhhcCCC
Q 030305 4 AGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPK 43 (179)
Q Consensus 4 ~~vg~m~~~kPsRSDe~L~~Eeq~~i~~evRa~FD~~APK 43 (179)
||.|+|.-.||. .+|-++|.++||.++++=+.+
T Consensus 1 mm~GG~s~~~~a-------t~Eiq~I~d~Vk~~le~k~g~ 33 (98)
T d1nb5i_ 1 MIPGGLSEAKPA-------TPEIQEIVDKVKPQLEEKTNE 33 (98)
T ss_dssp CCTTSCCCCEEC-------CHHHHHHHHHHHHHHHHHHCC
T ss_pred CccCCCCCCCCC-------CHHHHHHHHHHHHHHHHhcCC
Confidence 799999866654 256678999999999985554
No 2
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.79 E-value=3.9 Score=28.75 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=26.0
Q ss_pred ecccceeecCCCCcccccCHHHHHHHHHHHHHhhhhcCCC
Q 030305 4 AGVDQWTVTKPSRSDEVLDAVEQVRIANRVRAQIDSMAPK 43 (179)
Q Consensus 4 ~~vg~m~~~kPsRSDe~L~~Eeq~~i~~evRa~FD~~APK 43 (179)
||.|.|.-.||. .+|-++|.++||.+++.-+.+
T Consensus 1 mm~GG~s~~~~a-------t~Eiq~i~d~Vk~~~e~k~~~ 33 (98)
T d1stfi_ 1 MMSGAPSATQPA-------TAETQHIADQVRSQLEEKYNK 33 (98)
T ss_dssp CCBSCCCCCEEC-------CHHHHHHHHTTHHHHHHHHTC
T ss_pred CcCCCCCCCCCC-------CHHHHHHHHHHHHHHHHHcCC
Confidence 789999865554 257789999999999986654
No 3
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=33.00 E-value=2.6 Score=32.17 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=14.5
Q ss_pred hhcccccccccCCCCCccc
Q 030305 105 YYKQLVSIDKDHHTTGTGF 123 (179)
Q Consensus 105 YYkdL~~IDKqHHTTGtGF 123 (179)
.+++|-.-=|+|||||--+
T Consensus 147 ~l~~L~~YVkehhttGl~W 165 (176)
T d1s0pa_ 147 FLKDLEKYIKQYHTTGLTW 165 (176)
T ss_dssp HHHHHHHHHHHHSTTSCCC
T ss_pred HHHHHHHHHHHhCCCCCcc
Confidence 4566777779999999654
No 4
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.21 E-value=73 Score=23.48 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.5
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCCC
Q 030305 20 VLDAVEQVRIANRVRAQIDSMAPK 43 (179)
Q Consensus 20 ~L~~Eeq~~i~~evRa~FD~~APK 43 (179)
-|++|||.-|+.=++||-+-.-|-
T Consensus 6 ~lt~eq~~lI~~l~~Ah~~t~~~~ 29 (255)
T d1ie9a_ 6 KLSEEQQRIIAILLDAHHKTYDPT 29 (255)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCC
Confidence 488999999999999998877663
No 5
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=17.04 E-value=52 Score=26.19 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=30.2
Q ss_pred eeeccccee--ecCCC-Ccccc--cCHHHHHHHHHHHHHhhhhcC
Q 030305 2 VLAGVDQWT--VTKPS-RSDEV--LDAVEQVRIANRVRAQIDSMA 41 (179)
Q Consensus 2 ~~~~vg~m~--~~kPs-RSDe~--L~~Eeq~~i~~evRa~FD~~A 41 (179)
+++.+|++| +.-|+ |+.+. |+.|+-....+-++.+|..+-
T Consensus 66 ~i~LiG~~T~~iGDPsgk~~~R~~l~~~~i~~n~~~~~~~~~~~~ 110 (323)
T d1jila_ 66 PIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIF 110 (323)
T ss_dssp EEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred eEEeehhhhhhccCCCccchhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 456678876 77887 77665 888888888888888887764
No 6
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.01 E-value=44 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=18.0
Q ss_pred ccCHHHHHHHHHHHHHhhhh-cCCC
Q 030305 20 VLDAVEQVRIANRVRAQIDS-MAPK 43 (179)
Q Consensus 20 ~L~~Eeq~~i~~evRa~FD~-~APK 43 (179)
-|+ |||..+.+.+|+|.+. ++|.
T Consensus 6 ~L~-ee~~~l~~~~r~f~~~~i~p~ 29 (231)
T d1jqia2 6 ELP-ETHQMLRQTCRDFAEKELVPI 29 (231)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHTTTT
T ss_pred CCC-HHHHHHHHHHHHHHHHhChHH
Confidence 456 7788899999999996 5553
No 7
>d2foka1 a.4.5.12 (A:5-143) Restriction endonuclease FokI, N-terminal (recognition) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=16.92 E-value=25 Score=26.09 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.9
Q ss_pred ccceEEeecCCceeEee
Q 030305 121 TGFIRVANEGNGYNIRV 137 (179)
Q Consensus 121 tGFIKv~k~~~~f~i~~ 137 (179)
-||||+.+++..|.|+.
T Consensus 113 lgfik~~~~~dtF~ITe 129 (139)
T d2foka1 113 LGFIEYINKSDSFVITD 129 (139)
T ss_dssp TTSEEEETTTTEEEECH
T ss_pred cCeeEEecCCCeEEEeH
Confidence 58999999889999864
No 8
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=16.02 E-value=23 Score=20.19 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=10.1
Q ss_pred cccccccccCCCC
Q 030305 107 KQLVSIDKDHHTT 119 (179)
Q Consensus 107 kdL~~IDKqHHTT 119 (179)
..|+||||--|-+
T Consensus 16 Ekl~ClDk~WHK~ 28 (30)
T d1zfoa_ 16 EKVNCLDKFWHKA 28 (30)
T ss_dssp GCCCSSSSCCCGG
T ss_pred HHhhhhHHHHhhc
Confidence 3699999988753
No 9
>d2gf3a2 d.16.1.3 (A:218-321) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}
Probab=15.74 E-value=79 Score=20.31 Aligned_cols=31 Identities=3% Similarity=0.078 Sum_probs=24.5
Q ss_pred CCCCccc--ccCHHHHHHHHHHHHHhhhhcCCC
Q 030305 13 KPSRSDE--VLDAVEQVRIANRVRAQIDSMAPK 43 (179)
Q Consensus 13 kPsRSDe--~L~~Eeq~~i~~evRa~FD~~APK 43 (179)
-|.+-|. ..++++.+++.+-|+.||=++.|.
T Consensus 59 dPd~~dr~~~~~~~~~~~l~~~v~~~~Pgl~~~ 91 (104)
T d2gf3a2 59 DPDTINREFGVYPEDESNLRAFLEEYMPGANGE 91 (104)
T ss_dssp CTTTCCCCTTSSHHHHHHHHHHHHHHCGGGCSC
T ss_pred CccccccCCCCCHHHHHHHHHHHHHHCCCCCCC
Confidence 4666554 467888999999999999988764
No 10
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=15.39 E-value=25 Score=20.94 Aligned_cols=12 Identities=33% Similarity=0.216 Sum_probs=9.9
Q ss_pred CccccCCCCCCC
Q 030305 147 PVYKSNPATNDW 158 (179)
Q Consensus 147 ~~~ksNPATNDW 158 (179)
-.|..|||.||-
T Consensus 8 cpcq~np~~~~i 19 (39)
T d2i9wa2 8 CPCQINPALNAV 19 (39)
T ss_dssp CGGGCCTTCCCS
T ss_pred cccccCcccccc
Confidence 469999999974
Done!