BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030306
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
EK Y +P+ Y P R A +GYWK G +I G+ V IK++ F+
Sbjct: 73 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALVFYIGKA 130
Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
G KT+W M EYRL+ ++ T LD WVLC+IY
Sbjct: 131 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 166
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 71 EKGCYVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGE 130
EK Y +P+ Y P R A +GYWK G +I G+ V IK++ F+
Sbjct: 70 EKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATG--TDKIISTEGQRVGIKKALVFYIGKA 127
Query: 131 NIGRKTDWNMTEYRLL----KHSCTSLDSWVLCKIY 162
G KT+W M EYRL+ ++ T LD WVLC+IY
Sbjct: 128 PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 75 YVLTPKHLLYGLTWLPERRAKNGYWKPYGYIDGRIFGACGKLVAIKQSFTFHEPGENIGR 134
Y TP+ Y P R A NGYWK G + G+ + IK++ F+ G
Sbjct: 72 YFFTPRDRKYPNGSRPNRAAGNGYWKATG--ADKPVAPRGRTLGIKKALVFYAGKAPRGV 129
Query: 135 KTDWNMTEYRL---------LKHSCTSLDSWVLCKIY 162
KTDW M EYRL K LD WVLC++Y
Sbjct: 130 KTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY 166
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein
4 (Gcp4)
Length = 677
Score = 28.9 bits (63), Expect = 1.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 38 DHHPADFFPGSL----LRAFCTSFNNVQLP 63
DHHP+ G L LRAFCT ++V P
Sbjct: 70 DHHPSQQGQGGLHGIYLRAFCTGLDSVLQP 99
>pdb|2YW3|A Chain A, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
pdb|2YW3|B Chain B, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
pdb|2YW3|C Chain C, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
pdb|2YW3|D Chain D, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
pdb|2YW3|E Chain E, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
pdb|2YW3|F Chain F, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
pdb|2YW4|A Chain A, Crystal Structure Analysis Of The 4-Hydroxy-2-Oxoglutarate
Aldolase2- Deydro-3-Deoxyphosphogluconate Aldolase From
Tthb1
Length = 207
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 41 PADFFPG-SLLRAFCTSFNNVQ-LPKGGDRDREKGCYVLTPKHLLYGLTWL 89
PA+ F G +LRA+ F V+ LP GG ++ Y P L G +WL
Sbjct: 132 PAEPFQGVRVLRAYAEVFPEVRFLPTGGIKEEHLPHYAALPNLLAVGGSWL 182
>pdb|4E38|A Chain A, Crystal Structure Of Probable
Keto-Hydroxyglutarate-Aldolase From Vibrionales
Bacterium Swat-3 (Target Efi-502156)
pdb|4E38|B Chain B, Crystal Structure Of Probable
Keto-Hydroxyglutarate-Aldolase From Vibrionales
Bacterium Swat-3 (Target Efi-502156)
pdb|4E38|C Chain C, Crystal Structure Of Probable
Keto-Hydroxyglutarate-Aldolase From Vibrionales
Bacterium Swat-3 (Target Efi-502156)
Length = 232
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 44 FFPG------SLLRAFCTSFNNVQL-PKGGDRDREKGCYVLTPKHLLYGLTWLPERR-AK 95
FFP S++++ + +++L P GG Y+ P+ L G TW+ +++
Sbjct: 153 FFPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVT 212
Query: 96 NGYW 99
NG W
Sbjct: 213 NGEW 216
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDS|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk261
pdb|3DDW|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DDW|B Chain B, Crystal Structure Of Glycogen Phosphorylase Complexed With
An Anthranilimide Based Inhibitor Gsk055
pdb|3DD1|A Chain A, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
pdb|3DD1|B Chain B, Crystal Structure Of Glycogen Phophorylase Complexed With
An Anthranilimide Based Inhibitor Gsk254
Length = 848
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 331 FPDQVAIQLNDTHPALAIP-ELMRIFV 356
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
pdb|2ZB2|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcose
And 5-
Chloro-N-[4-(1,
2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide
Length = 849
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 332 FPDQVAIQLNDTHPALAIP-ELMRIFV 357
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp
Length = 846
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 329 FPDQVAIQLNDTHPALAIP-ELMRIFV 354
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|1FC0|B Chain B, Human Liver Glycogen Phosphorylase Complexed With
N-Acetyl-Beta-D- Glucopyranosylamine
pdb|2ATI|A Chain A, Glycogen Phosphorylase Inhibitors
pdb|2ATI|B Chain B, Glycogen Phosphorylase Inhibitors
Length = 846
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 329 FPDQVAIQLNDTHPALAIP-ELMRIFV 354
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex
Length = 847
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 330 FPDQVAIQLNDTHPALAIP-ELMRIFV 355
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
pdb|1XOI|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Chloroindoloyl Glycine Amide
Length = 846
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 329 FPDQVAIQLNDTHPALAIP-ELMRIFV 354
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EM6|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-526, 423
pdb|1EXV|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1EXV|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With Glcnac
And Cp-403, 700
pdb|1L5Q|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5Q|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403700
pdb|1L5R|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5R|B Chain B, Human Liver Glycogen Phosphorylase A Complexed With
Riboflavin, N- Acetyl-Beta-D-Glucopyranosylamine And
Cp-403,700
pdb|1L5S|A Chain A, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L5S|B Chain B, Human Liver Glycogen Phosphorylase Complexed With Uric
Acid, N-Acetyl- Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|A Chain A, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
pdb|1L7X|B Chain B, Human Liver Glycogen Phosphorylase B Complexed With
Caffeine, N- Acetyl-Beta-D-Glucopyranosylamine, And
Cp-403,700
Length = 847
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 330 FPDQVAIQLNDTHPALAIP-ELMRIFV 355
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEH|B Chain B, Human Liver Glycogen Phosphorylase (Tense State) In
Complex With The Allosteric Inhibitor Ave5688
pdb|3CEJ|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEJ|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave2865
pdb|3CEM|A Chain A, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
pdb|3CEM|B Chain B, Human Glycogen Phosphorylase (Tense State) In Complex With
The Allosteric Inhibitor Ave9423
Length = 809
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 28 FPDLITTEINDHHPADFFPGSLLRAFC 54
FPD + ++ND HPA P L+R F
Sbjct: 307 FPDQVAIQLNDTHPALAIP-ELMRIFV 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,038,327
Number of Sequences: 62578
Number of extensions: 259690
Number of successful extensions: 427
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 14
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)