BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030307
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SG80|ASD1_ARATH Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1
SV=1
Length = 678
Score = 224 bits (572), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 140/176 (79%), Gaps = 3/176 (1%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSS 60
MASYAPLFVN NDRRW PDAIVFNS+ LYGTPSYWVQ+FF ESSGATLL +TL NS+S
Sbjct: 500 MASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTS- 558
Query: 61 IVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLK 120
+VASAISW++ N K Y+RIK VN G++S N++V V GL PN +++SGS KT LTSTN+
Sbjct: 559 LVASAISWKN--NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVM 616
Query: 121 DENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVSMKMEGTDSFSR 176
DENSF +P KVVP +LLE A +DM VV+ P+SF+SFDLL+ES ++M +DS S
Sbjct: 617 DENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISDSSSH 672
>sp|Q8VZR2|ASD2_ARATH Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2
SV=1
Length = 674
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 129/180 (71%), Gaps = 8/180 (4%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSS 60
M SYAPLFVN NDRRW PDAIVFNS+ LYGTPSYWVQ FF ESSGATLLN+T L +SS
Sbjct: 499 MVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNST-LKGKTSS 557
Query: 61 IVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLK 120
+ ASAIS++ N K Y++IK VN G SVNLKV+V GL K GS K LTS ++
Sbjct: 558 VEASAISFQ--TNGKDYIQIKAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVM 612
Query: 121 DENSFMEPNKVVPSLTLLE-NAAKDMDVVISPYSFTSFDLLRESVS-MKMEGTDSFSRSS 178
DENSF PN +VP +LLE +D+ V+ P+SF+SFDLL ES + +KM +DS+ ++S
Sbjct: 613 DENSFSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTESENVIKMPISDSYKKTS 672
>sp|Q2U790|ABFA_ASPOR Probable alpha-N-arabinofuranosidase A OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=abfA PE=3 SV=2
Length = 629
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 MASYAPLFVNANDRRWKPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W P+ I F N + + T SY+VQQ F + G T+ N T
Sbjct: 483 MAAYAPLLQLVNSTQWTPNLIAFTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------ 536
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTN 118
S + W S Y +K+ N G+ + + V++ SG T +LT
Sbjct: 537 SDSAFGPVYWVASSADDKYY-VKLANYGADTQEITVTI----------SGKTGGKLTVLA 585
Query: 119 LKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155
D +F + TL+ + DM ++FT
Sbjct: 586 DSDPKAFNSDTQ-----TLVTPSESDMKATNGKFTFT 617
>sp|Q0CTV2|ABFA_ASPTN Probable alpha-N-arabinofuranosidase A OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=abfA PE=3 SV=1
Length = 628
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 1 MASYAPLFVNANDRRWKPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W PD I F N + + SY+VQQ F + G T+ T
Sbjct: 482 MAAYAPLLQLVNSTQWTPDLISFTQNPNMVIDSTSYYVQQMFSVNRGDTIKEVT------ 535
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGL 99
S + W S + SY +K+ N G+ + + VS+ G+
Sbjct: 536 SDSAFGPVYWVASSSGSSYY-VKLANYGADTQEVSVSIPGM 575
>sp|B8NKA3|ABFA_ASPFN Probable alpha-N-arabinofuranosidase A OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=abfA PE=3 SV=2
Length = 629
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRRWKPDAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W P+ I F N + + T SY+VQQ F + G T+ N T
Sbjct: 483 MAAYAPLLQLVNSTQWTPNLIAFTQNPSTVIETTSYYVQQMFSVNRGDTIHNVT------ 536
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 98
S + W S Y +K+ N G+ + + V++ G
Sbjct: 537 SDSAFGPVYWVASSADDKYY-VKLANYGADTQEITVTISG 575
>sp|Q8NK90|ABFA_ASPKW Alpha-N-arabinofuranosidase A OS=Aspergillus kawachii (strain NBRC
4308) GN=abfA PE=1 SV=2
Length = 628
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNSA--QLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W PD I + + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 98
S + W S SY +K+ N GS + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|P42254|ABFA_ASPNG Alpha-N-arabinofuranosidase A OS=Aspergillus niger GN=abfA PE=1
SV=1
Length = 628
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNS--AQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W PD I + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 98
S + W S SY +K+ N GS + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|Q96X54|ABFA_ASPAW Probable alpha-N-arabinofuranosidase A OS=Aspergillus awamori
GN=abfA PE=1 SV=1
Length = 628
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNSA--QLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W PD I + + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLVNSTQWTPDLIGYTQSPDDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 98
S + W S SY +K+ N GS + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-VKLANYGSETQDLTVSIPG 574
>sp|A2Q7E0|ABFA_ASPNC Probable alpha-N-arabinofuranosidase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=abfA PE=3 SV=1
Length = 628
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNS--AQLYGTPSYWVQQFFRESSGATLLNATLLTNSS 58
MA+YAPL N +W PD I + ++ + SY+VQ+ F + G T+ T S
Sbjct: 482 MAAYAPLLQLINSTQWTPDLIGYTQSPGDIFLSTSYYVQEMFSRNRGDTIKEVT----SD 537
Query: 59 SSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDG 98
S + W S SY +K+ N GS + +L VS+ G
Sbjct: 538 SDF--GPLYWVASSAGDSYY-MKLANYGSETQDLTVSIPG 574
>sp|P82593|ABF1_STRCX Alpha-N-arabinofuranosidase 1 OS=Streptomyces chartreusis PE=1 SV=1
Length = 825
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 1 MASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSG 45
+ASYAPL N + +W+PD + FN+ + + +Y VQ+ F + G
Sbjct: 497 LASYAPLLANEDYVQWRPDLVWFNNRASWNSANYEVQKLFMNNVG 541
>sp|Q97LQ9|THIE_CLOAB Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=thiE PE=3 SV=1
Length = 211
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 27 QLYGTPSYWVQQFFR-ESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNL 85
++ G ++ +++ E +GAT L + N+S+ A A+S E+ +N K+ ++I VV +
Sbjct: 104 KIIGVSAHSIEEALEAERNGATYLGVGAIYNTSTKGDAQAVSLEELKNIKNSVKIPVVGI 163
Query: 86 GS 87
G
Sbjct: 164 GG 165
>sp|Q5H232|PQQB_XANOR Coenzyme PQQ synthesis protein B OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=pqqB PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 3 SYAPLFVNANDRRWKPDAIVFNSA-----QLYGTPSYWVQQFFRESSGATLLNATLLTNS 57
+ A + V+A+ RW ++ N++ Q+ TP+ W QQ R S + A LLT+
Sbjct: 38 TQASIAVSADGERW----VLINASPDFRQQILATPALWPQQGLRHSP----IKAVLLTSG 89
Query: 58 SSSIVASAISWEDSENAKSYLRIKVVNL 85
+A +S +S+ + +V++L
Sbjct: 90 EIDHIAGLLSMRESQPFALHASRRVLDL 117
>sp|Q2P4Y6|PQQB_XANOM Coenzyme PQQ synthesis protein B OS=Xanthomonas oryzae pv. oryzae
(strain MAFF 311018) GN=pqqB PE=3 SV=1
Length = 299
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 3 SYAPLFVNANDRRWKPDAIVFNSA-----QLYGTPSYWVQQFFRESSGATLLNATLLTNS 57
+ A + V+A+ RW ++ N++ Q+ TP+ W QQ R S + A LLT+
Sbjct: 38 TQASIAVSADGERW----VLINASPDFRQQILATPALWPQQGLRHSP----IKAVLLTSG 89
Query: 58 SSSIVASAISWEDSENAKSYLRIKVVNL 85
+A +S +S+ + +V++L
Sbjct: 90 EIDHIAGLLSMRESQPFALHASRRVLDL 117
>sp|C5DL76|AIM3_LACTC Altered inheritance of mitochondria protein 3 OS=Lachancea
thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL
Y-8284) GN=AIM3 PE=3 SV=1
Length = 842
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 38 QFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSV 90
Q F E +G + + L + +S+ SW+DSE K LRIK+ N+ SS+
Sbjct: 345 QPFPEENGVSDVQE--LKSPTSATTVKPYSWKDSEELKESLRIKIQNVDISSL 395
>sp|P15753|GSPN_KLEPN Type II secretion system protein N OS=Klebsiella pneumoniae GN=pulN
PE=3 SV=1
Length = 252
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 47 TLLNATLLTNSSSSIVASAISWEDSE--NAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSI 104
TL A+ N I ASA+ W+D+ + L + VN S L +S
Sbjct: 131 TLPEASFNANGCRRIAASAVQWQDAALSSPAGLLELAQVNGKLSCTPAGALAVALTQDSH 190
Query: 105 KLSGSTKTQLTSTNLKDENSFMEPNKVVPS-LTLL--ENAAKDMDVVISPYSF 154
+LS + + LT N ++P + P+ LTLL +N KD I P+ +
Sbjct: 191 QLSLTGQGVLTPDGRYTFNGTLQPRQAAPALLTLLVAQNGRKDEQGRI-PWRW 242
>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana
GN=ABCB13 PE=3 SV=1
Length = 1245
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 2 ASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSI 61
A Y+P F N R + AI+F A + P Y +Q +F G L + L+ S+I
Sbjct: 708 AFYSP-FPNVIKRDVEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLS-LFSAI 765
Query: 62 VASAISWED 70
+++ I W D
Sbjct: 766 LSNEIGWFD 774
>sp|P0C0R0|GYRA_STAES DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrA PE=3 SV=1
Length = 893
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 19 DAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKS 76
D ++F N ++Y Y V + R+S G ++NA L N + +++ I+ +D E+ +
Sbjct: 556 DHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDET--ISTMIAVKDLESEED 613
Query: 77 YL 78
YL
Sbjct: 614 YL 615
>sp|Q5HK04|GYRA_STAEQ DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrA PE=3 SV=1
Length = 893
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 19 DAIVF--NSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKS 76
D ++F N ++Y Y V + R+S G ++NA L N + +++ I+ +D E+ +
Sbjct: 556 DHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDET--ISTMIAVKDLESEED 613
Query: 77 YL 78
YL
Sbjct: 614 YL 615
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.124 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,100,835
Number of Sequences: 539616
Number of extensions: 2014293
Number of successful extensions: 4847
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4817
Number of HSP's gapped (non-prelim): 46
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)