Query 030307
Match_columns 179
No_of_seqs 129 out of 682
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06964 Alpha-L-AF_C: Alpha-L 100.0 1.9E-38 4.2E-43 249.2 15.1 136 1-153 42-177 (177)
2 smart00813 Alpha-L-AF_C Alpha- 100.0 1.9E-33 4.1E-38 223.3 15.2 139 1-153 42-189 (189)
3 COG3534 AbfA Alpha-L-arabinofu 99.9 1.6E-26 3.4E-31 200.6 11.2 136 19-162 356-501 (501)
4 PF02055 Glyco_hydro_30: O-Gly 96.7 0.024 5.2E-07 51.5 11.0 83 10-98 383-473 (496)
5 PF02806 Alpha-amylase_C: Alph 94.0 0.51 1.1E-05 32.6 7.8 21 140-160 74-94 (95)
6 KOG2566 Beta-glucocerebrosidas 84.8 2 4.3E-05 38.2 5.1 71 10-87 408-486 (518)
7 PLN02808 alpha-galactosidase 77.6 13 0.00028 33.0 7.7 66 76-161 320-385 (386)
8 COG5520 O-Glycosyl hydrolase [ 76.4 23 0.00049 31.3 8.7 106 35-163 327-432 (433)
9 PLN02229 alpha-galactosidase 76.3 15 0.00032 33.0 7.9 68 76-162 353-420 (427)
10 PF14509 GH97_C: Glycosyl-hydr 73.3 31 0.00067 24.7 9.9 75 77-160 28-102 (103)
11 PLN02692 alpha-galactosidase 68.0 34 0.00074 30.6 8.1 68 76-162 344-411 (412)
12 TIGR02456 treS_nterm trehalose 67.7 17 0.00037 33.3 6.5 58 78-159 481-538 (539)
13 PRK12568 glycogen branching en 58.6 51 0.0011 31.7 7.9 75 78-160 653-729 (730)
14 PF11614 FixG_C: IG-like fold 54.7 23 0.0005 25.3 4.0 25 76-100 33-57 (118)
15 cd06466 p23_CS_SGT1_like p23_l 53.8 56 0.0012 21.4 5.6 24 128-151 51-74 (84)
16 PRK14706 glycogen branching en 52.1 1.7E+02 0.0036 27.8 10.1 76 78-162 547-624 (639)
17 PF05506 DUF756: Domain of unk 51.3 50 0.0011 22.4 5.1 33 61-97 9-41 (89)
18 PF11941 DUF3459: Domain of un 48.3 79 0.0017 21.0 6.7 16 78-93 44-59 (89)
19 PRK05402 glycogen branching en 45.2 1.1E+02 0.0024 29.3 8.0 74 78-160 648-724 (726)
20 PRK12313 glycogen branching en 44.6 1.4E+02 0.003 28.0 8.4 76 78-161 552-629 (633)
21 TIGR02455 TreS_stutzeri trehal 43.9 3E+02 0.0065 26.4 10.9 63 78-163 623-685 (688)
22 COG2808 PaiB Transcriptional r 40.9 22 0.00047 28.8 2.1 26 13-38 62-93 (209)
23 PRK14705 glycogen branching en 40.1 1.3E+02 0.0029 30.7 7.9 75 78-160 1147-1223(1224)
24 PF08533 Glyco_hydro_42C: Beta 38.0 20 0.00044 22.5 1.3 17 78-94 13-29 (58)
25 cd06494 p23_NUDCD2_like p23-li 36.8 1.3E+02 0.0029 20.9 5.5 22 130-151 58-80 (93)
26 PF01229 Glyco_hydro_39: Glyco 36.6 2.1E+02 0.0046 25.8 8.1 22 28-50 347-368 (486)
27 PLN02447 1,4-alpha-glucan-bran 34.6 1.9E+02 0.0041 28.1 7.7 75 79-162 654-733 (758)
28 cd06469 p23_DYX1C1_like p23_li 29.2 1.6E+02 0.0034 18.9 5.4 26 126-151 43-68 (78)
29 TIGR02745 ccoG_rdxA_fixG cytoc 28.7 2E+02 0.0043 25.9 6.5 25 76-100 348-372 (434)
30 KOG3848 Extracellular protein 28.1 34 0.00074 30.7 1.5 26 4-29 190-216 (516)
31 PF11622 DUF3251: Protein of u 27.6 2.7E+02 0.0059 21.8 6.2 20 145-164 123-142 (165)
32 PLN02960 alpha-amylase 27.3 2.4E+02 0.0053 27.9 7.1 21 140-160 872-892 (897)
33 PF06030 DUF916: Bacterial pro 26.4 2.6E+02 0.0056 20.4 6.6 21 77-97 30-50 (121)
34 TIGR01515 branching_enzym alph 25.8 2.5E+02 0.0054 26.3 6.8 19 140-158 595-613 (613)
35 PF11182 AlgF: Alginate O-acet 24.7 3.5E+02 0.0077 21.4 7.5 69 77-162 28-96 (181)
36 PF00207 A2M: Alpha-2-macroglo 23.9 1.3E+02 0.0029 20.3 3.7 20 77-96 73-92 (92)
37 smart00632 Aamy_C Aamy_C domai 23.7 1.4E+02 0.0031 19.8 3.7 19 139-157 57-76 (81)
38 PLN02899 alpha-galactosidase 23.2 4.1E+02 0.0089 25.3 7.6 73 27-100 506-584 (633)
39 PF09154 DUF1939: Domain of un 22.3 2.2E+02 0.0047 18.0 6.6 17 141-157 40-56 (57)
40 PF11852 DUF3372: Domain of un 21.1 92 0.002 24.4 2.6 61 78-159 106-166 (168)
41 cd06472 ACD_ScHsp26_like Alpha 20.1 65 0.0014 21.9 1.4 24 128-151 69-92 (92)
No 1
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=100.00 E-value=1.9e-38 Score=249.17 Aligned_cols=136 Identities=38% Similarity=0.653 Sum_probs=116.7
Q ss_pred CceecceeecCCCCCCCccEEEecCCceecCCchhhHHHhhccCCCeEEEEEEeecCCCceEEEEEEeccCCCCeeeEEE
Q 030307 1 MASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRI 80 (179)
Q Consensus 1 masyAPl~~~~~~~qW~p~lI~~d~~~~~~tpsYyvf~lfs~~~g~~~l~~~v~~~~~~~l~~sa~~~~~s~~~~~~l~v 80 (179)
||||||||++.+++||+|+||+||++++|+||+||||+||++|.|+++| ++|+++|++|+++++ ++|
T Consensus 42 ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l---------~~l~~~As~d~~~~~----l~v 108 (177)
T PF06964_consen 42 MACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL---------PPLDVSASRDEDGGE----LYV 108 (177)
T ss_dssp EEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE---------ESEEEEEEEETTTTE----EEE
T ss_pred EEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe---------ccEEEEEEEECCCCE----EEE
Confidence 8999999999999999999999999999999999999999999999999 379999999887654 999
Q ss_pred EEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCce
Q 030307 81 KVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYS 153 (179)
Q Consensus 81 kvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~S 153 (179)
||||++.++++++|+|+|+... ..+++++|+|+++.+.|++++|++|+|++..+...++.++++|||+|
T Consensus 109 ~vVN~~~~~~~v~l~l~g~~~~----~~a~~~~Ltg~~~~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~lp~~S 177 (177)
T PF06964_consen 109 KVVNRSSEPQTVTLNLQGFSPA----ATATVTTLTGDDPDAENTFENPENVVPVTSTVSAEGGTFTYTLPPYS 177 (177)
T ss_dssp EEEE-SSSBEEEEEEETTSTS-----EEEEEEEEETSSTT-B-CSSSTTSSEEEEEEEEEETTEEEEEE-SSE
T ss_pred EEEECCCCCEEEEEEEcCCCCC----ceEEEEEEECCCcccccCCCCCCEEEEEEeeEEecCCEEEEEeCCCC
Confidence 9999998899999999998763 68999999999999999999999999998888888999999999998
No 2
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=100.00 E-value=1.9e-33 Score=223.32 Aligned_cols=139 Identities=37% Similarity=0.541 Sum_probs=124.8
Q ss_pred CceecceeecCCCCCCCccEEEecCCceecCCchhhHHHhhccCCCeEEEEEEeecCC-------CceEEEEEEeccCCC
Q 030307 1 MASYAPLFVNANDRRWKPDAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSS-------SSIVASAISWEDSEN 73 (179)
Q Consensus 1 masyAPl~~~~~~~qW~p~lI~~d~~~~~~tpsYyvf~lfs~~~g~~~l~~~v~~~~~-------~~l~~sa~~~~~s~~ 73 (179)
|||||||+++.+ |.||.||++++|+||+||||+||+.|+|+++|++.+.++++ +.|+++|++|++++
T Consensus 42 ma~~A~lvn~~~-----p~~i~~~~~~~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~- 115 (189)
T smart00813 42 MASYAQLVNVIN-----PDMLTFNGGQAWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGG- 115 (189)
T ss_pred eehhhhhhcccc-----ceEEEeCCCCEEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCC-
Confidence 899999999874 89999999999999999999999999999999999998864 46999999977654
Q ss_pred CeeeEEEEEEeCCCC-cEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEE-EecCCeEEEEEcC
Q 030307 74 AKSYLRIKVVNLGSS-SVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLL-ENAAKDMDVVISP 151 (179)
Q Consensus 74 ~~~~l~vkvVN~~~~-~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~-~~~~~~~~~~lPa 151 (179)
+++||+||++.+ +++++|+|+|+.. ..+++++|+++++++.||+++|++|+|++... ...++.|+++|||
T Consensus 116 ---~~~v~vvN~~~~~~~~~~l~l~g~~~-----~~~~~~~l~~~~~~a~Nt~~~p~~V~p~~~~~~~~~~~~~~~~lp~ 187 (189)
T smart00813 116 ---SLTVKVVNRSPEEAVTVTISLRGLKA-----KSAEGTVLTSPDLNAANTFEDPNKVVPVTSTLAAVEGGTLTVTLPP 187 (189)
T ss_pred ---EEEEEEEeCCCCcCEEEEEEecCCcc-----ceEEEEEEeCCCCccccCCCCCCeeeccccCCceeeCCEEEEEeCC
Confidence 499999999965 7999999999874 35789999999999999999999999998763 5677899999999
Q ss_pred ce
Q 030307 152 YS 153 (179)
Q Consensus 152 ~S 153 (179)
+|
T Consensus 188 ~S 189 (189)
T smart00813 188 HS 189 (189)
T ss_pred CC
Confidence 97
No 3
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=200.56 Aligned_cols=136 Identities=23% Similarity=0.289 Sum_probs=122.0
Q ss_pred cEEEecCCceecCCchhhHHHhhccCCCeEEEEEEeecCCC--------ceEEEEEEeccCCCCeeeEEEEEEeCCCC-c
Q 030307 19 DAIVFNSAQLYGTPSYWVQQFFRESSGATLLNATLLTNSSS--------SIVASAISWEDSENAKSYLRIKVVNLGSS-S 89 (179)
Q Consensus 19 ~lI~~d~~~~~~tpsYyvf~lfs~~~g~~~l~~~v~~~~~~--------~l~~sa~~~~~s~~~~~~l~vkvVN~~~~-~ 89 (179)
.++...++++|+||+||||+|++.|.+++.|++.+++|+|. .|++||+++++.++ |+||+||++.+ +
T Consensus 356 ai~~ekgg~~~~~~~y~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~----l~i~vvN~~~~d~ 431 (501)
T COG3534 356 AIMTEKGGPAWLTPIYYPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGE----LTIFVVNRALEDA 431 (501)
T ss_pred heeecCCCcceeeehhhhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCe----EEEEEEecccccc
Confidence 56777778899999999999999999999999999998752 49999999888764 99999999966 4
Q ss_pred EEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeE-EEecCCeEEEEEcCceEEEEEEecc
Q 030307 90 VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTL-LENAAKDMDVVISPYSFTSFDLLRE 162 (179)
Q Consensus 90 ~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~-~~~~~~~~~~~lPa~Sv~vl~l~~~ 162 (179)
.+++|+|+|+... ..+++++|+|++++|.|+|+.|++|+|++.. ..++++.|++.|||+||.||||+++
T Consensus 432 ~~~~i~l~G~~~a----~~~~~~~lt~~~~~a~Nt~d~p~~V~p~~~~~~~vs~~~l~~~~~~~S~~virl~~~ 501 (501)
T COG3534 432 LKLNISLNGLKKA----KSAEHQVLTGDDLNATNTFDAPENVVPVPGKGATVSKNELTLDLPPLSVSVIRLKLK 501 (501)
T ss_pred ccceEEecccccc----ceeeEEEEecCccccccCCCCCCceecccCCCccccCCceeEecCCceEEEEEEecC
Confidence 9999999999853 5789999999999999999999999999987 5788889999999999999999863
No 4
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.65 E-value=0.024 Score=51.51 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=53.6
Q ss_pred cCCCCCCCcc------EEEecCCceecCCchhhHHHhhcc--CCCeEEEEEEeecCCCceEEEEEEeccCCCCeeeEEEE
Q 030307 10 NANDRRWKPD------AIVFNSAQLYGTPSYWVQQFFRES--SGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIK 81 (179)
Q Consensus 10 ~~~~~qW~p~------lI~~d~~~~~~tpsYyvf~lfs~~--~g~~~l~~~v~~~~~~~l~~sa~~~~~s~~~~~~l~vk 81 (179)
..+++.|-.+ ++..+.+.++++|.||.+..||.+ .|...+.+..... ...|.++|-.+.+ |.++|-
T Consensus 383 ~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~~~~-~~~l~~vAF~nPD-----Gs~vvV 456 (496)
T PF02055_consen 383 ENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTSSSS-DSGLEAVAFLNPD-----GSIVVV 456 (496)
T ss_dssp TTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEESSS-TTTEEEEEEEETT-----SEEEEE
T ss_pred CCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcccCCCCEEEEeeccCC-CCceeEEEEECCC-----CCEEEE
Confidence 3455655422 344456889999999999999998 5888888765422 2358888877554 237788
Q ss_pred EEeCCCCcEEEEEEEcc
Q 030307 82 VVNLGSSSVNLKVSVDG 98 (179)
Q Consensus 82 vVN~~~~~~~v~i~l~g 98 (179)
|.|++.+++.++|.+.+
T Consensus 457 v~N~~~~~~~~~v~v~~ 473 (496)
T PF02055_consen 457 VLNRGDSDQNFSVTVKD 473 (496)
T ss_dssp EEE-SSS-EEEEEEEEC
T ss_pred EEcCCCCccceEEEEec
Confidence 89999888887777765
No 5
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=93.96 E-value=0.51 Score=32.57 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.4
Q ss_pred ecCCeEEEEEcCceEEEEEEe
Q 030307 140 NAAKDMDVVISPYSFTSFDLL 160 (179)
Q Consensus 140 ~~~~~~~~~lPa~Sv~vl~l~ 160 (179)
..+++++++|||+|..|++++
T Consensus 74 ~~~g~~~~~lp~~s~~vl~~~ 94 (95)
T PF02806_consen 74 DSNGRITVTLPPYSALVLKLK 94 (95)
T ss_dssp ETTSEEEEEESTTEEEEEEEE
T ss_pred eeCCEEEEEECCCEEEEEEEc
Confidence 356789999999999999986
No 6
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=84.79 E-value=2 Score=38.20 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=44.2
Q ss_pred cCCCCCCC-----ccEEEec-CCceecCCchhhHHHhhcc--CCCeEEEEEEeecCCCceEEEEEEeccCCCCeeeEEEE
Q 030307 10 NANDRRWK-----PDAIVFN-SAQLYGTPSYWVQQFFRES--SGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIK 81 (179)
Q Consensus 10 ~~~~~qW~-----p~lI~~d-~~~~~~tpsYyvf~lfs~~--~g~~~l~~~v~~~~~~~l~~sa~~~~~s~~~~~~l~vk 81 (179)
-.+|+.|- ..+|.+. ..+.++||-||+...||.+ .|.+.+...++. ...|+++|..+++.. -+|-
T Consensus 408 ~~GGP~wv~nfvDspiIv~~t~~~fYKQPmfya~~hFSkFl~pGs~Rv~~~i~~--~~~ve~~aflnpdGs-----kvvV 480 (518)
T KOG2566|consen 408 AQGGPNWVSNFVDSPIIVNPTAQEFYKQPMFYALGHFSKFLPPGSVRVGHSINQ--NLDVEATAFLNPDGS-----KVVV 480 (518)
T ss_pred CcCCchhHhccCCCceEecHHHHHHhhccHHHHHHHHhhcCCCCceEeeeeecc--ccccceeEEEcCCCc-----EEEE
Confidence 34666674 3455553 4578999999999999997 477777665553 224555555544322 2344
Q ss_pred EEeCCC
Q 030307 82 VVNLGS 87 (179)
Q Consensus 82 vVN~~~ 87 (179)
+.|+++
T Consensus 481 llnk~s 486 (518)
T KOG2566|consen 481 LLNKNS 486 (518)
T ss_pred EeccCC
Confidence 456554
No 7
>PLN02808 alpha-galactosidase
Probab=77.56 E-value=13 Score=32.98 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=41.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 76 SYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 76 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
|...|-+.|++.+++++++++..++.. .. ..+.+ .|+-.+-+.. ...+.+++++|||.+.
T Consensus 320 g~~aVal~N~~~~~~~~~~~~~~lgl~----~~-~~~~v--rDlWs~~~~g-------------~~~~~~~~~v~pHg~~ 379 (386)
T PLN02808 320 KRVAVVLWNRGSSRATITARWSDIGLN----SS-AVVNA--RDLWAHSTQS-------------SVKGQLSALVESHACK 379 (386)
T ss_pred CCEEEEEEECCCCCEEEEEEHHHhCCC----CC-CceEE--EECCCCCccC-------------cccceEEEEECCceEE
Confidence 347899999998889999888655432 11 11111 1332221111 0134588999999999
Q ss_pred EEEEec
Q 030307 156 SFDLLR 161 (179)
Q Consensus 156 vl~l~~ 161 (179)
++||..
T Consensus 380 ~~rlt~ 385 (386)
T PLN02808 380 MYVLTP 385 (386)
T ss_pred EEEEeC
Confidence 999864
No 8
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=76.35 E-value=23 Score=31.35 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=57.1
Q ss_pred hhHHHhhccCCCeEEEEEEeecCCCceEEEEEEeccCCCCeeeEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEE
Q 030307 35 WVQQFFRESSGATLLNATLLTNSSSSIVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQL 114 (179)
Q Consensus 35 yvf~lfs~~~g~~~l~~~v~~~~~~~l~~sa~~~~~s~~~~~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L 114 (179)
|+...|+...+.-++.++-....++-+++|+=. +. +-++|-..|.+..++.=++.++.-+.. .+ ...+
T Consensus 327 y~ma~fskf~q~gy~rldat~sp~~nvyvsayv----g~--nkvvivaink~~~~vnq~f~fqNpdgs-----nV-s~w~ 394 (433)
T COG5520 327 YCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYV----GP--NKVVIVAINKGTYPVNQSFNFQNPDGS-----NV-SSWV 394 (433)
T ss_pred eeEeeeeeeccCCceEEecccCccceEEEEEEe----cC--CcEEEEeecccccccceeEEEECCCCC-----eE-EEEE
Confidence 344444444333333332222234456676642 22 237777888876654444445443321 22 3445
Q ss_pred ecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEEEEEEeccc
Q 030307 115 TSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRES 163 (179)
Q Consensus 115 ~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~vl~l~~~~ 163 (179)
+.+.. .+.+. +.+...+++|..+|||-|++.+.-..+|
T Consensus 395 ns~t~----------n~~~~-sni~~a~~rf~asLPaqsvtTfv~~~ns 432 (433)
T COG5520 395 NSSTL----------NMAKT-SNILAAGGRFNASLPAQSVTTFVWDLNS 432 (433)
T ss_pred eccch----------hhccc-cceeccCceeeeecCcccceeEEEeccC
Confidence 44422 12222 3355678999999999999988776653
No 9
>PLN02229 alpha-galactosidase
Probab=76.33 E-value=15 Score=33.00 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=42.6
Q ss_pred eeEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 76 SYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 76 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
+..+|-+.|++.+++++++.+..++.. .. ..+.+ .|+-.+-+... ...+.+++++|||.+.
T Consensus 353 g~~aValfN~~~~~~~v~v~~~~lGl~----~~-~~~~V--rDLW~~~dlg~------------~~~~~~~~~v~~Hg~~ 413 (427)
T PLN02229 353 DRLVVALWNRCSEPATITASWDVIGLE----SS-ISVSV--RDLWKHKDLSE------------NVVGSFGAQVDAHDCH 413 (427)
T ss_pred CCEEEEEEeCCCCCEEEEEEHHHcCCC----CC-CceEE--EECCCCCccCc------------cccceEEEEECCCeEE
Confidence 347899999998889999988754432 11 01111 13322211110 0245789999999999
Q ss_pred EEEEecc
Q 030307 156 SFDLLRE 162 (179)
Q Consensus 156 vl~l~~~ 162 (179)
++||...
T Consensus 414 l~rl~~~ 420 (427)
T PLN02229 414 MYIFTPQ 420 (427)
T ss_pred EEEEecc
Confidence 9999764
No 10
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=73.27 E-value=31 Score=24.66 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=43.1
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEEE
Q 030307 77 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 156 (179)
Q Consensus 77 ~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~v 156 (179)
.=+|-..|-... ..++|.|+-+... ..-++.++. +.+++.. .+|..+.-++..+. .++.+++.|.|..=.+
T Consensus 28 ~Wyvg~in~~~~-r~i~l~L~FL~~g----~~y~a~i~~-D~~~a~~--~~~~~~~~~~~~v~-~~~~l~i~l~~~GG~v 98 (103)
T PF14509_consen 28 DWYVGGINGEDA-RTITLPLSFLDKG----KKYTATIYT-DGPDADY--TNPEAYKIETRKVT-SGDKLTITLAPGGGFV 98 (103)
T ss_dssp EEEEEEEE-TT--EEEEEEGCCS-TT------EEEEEEE-E-TTTCT--TCTT-EEEEEEEE--TT-EEEEEE-TT-EEE
T ss_pred CEEEEEeeCCCc-eEEEEECcccCCC----CcEEEEEEE-eCCcccc--cCCcceEEEEEEEC-CCCEEEEEEeCCCcEE
Confidence 378888886544 4488888876643 123455554 4443333 56777766655443 4688999999998888
Q ss_pred EEEe
Q 030307 157 FDLL 160 (179)
Q Consensus 157 l~l~ 160 (179)
++|.
T Consensus 99 i~~~ 102 (103)
T PF14509_consen 99 IRIT 102 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 11
>PLN02692 alpha-galactosidase
Probab=67.99 E-value=34 Score=30.62 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=41.4
Q ss_pred eeEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 76 SYLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 76 ~~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
+...|-+.|+++...++++.+..++... ....++. |+-++-+... ...+.+++++|||.+.
T Consensus 344 g~~aVal~N~~~~~~~i~~~~~~lgl~~--~~~~~vr-----DLW~~~~~g~------------~~~~~~~~~v~~Hg~~ 404 (412)
T PLN02692 344 YRVALLLLNRGPWRNSITANWDDIGIPA--NSIVEAR-----DLWEHKTLKQ------------HFVGNLTATVDSHACK 404 (412)
T ss_pred CCEEEEEEECCCCCEEEEEeHHHhCCCC--CCceEEE-----ECCCCCccCc------------cccceEEEEECCceEE
Confidence 3478999999988888888876443210 0111111 2222211110 1245689999999999
Q ss_pred EEEEecc
Q 030307 156 SFDLLRE 162 (179)
Q Consensus 156 vl~l~~~ 162 (179)
++||...
T Consensus 405 l~rl~~~ 411 (412)
T PLN02692 405 MYILKPI 411 (412)
T ss_pred EEEEecC
Confidence 9998653
No 12
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=67.73 E-value=17 Score=33.26 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=34.6
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEEEE
Q 030307 78 LRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 157 (179)
Q Consensus 78 l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~vl 157 (179)
.+|-++|.+.+++.+++.+.... +.. ..-|.+++. +. ...++.++++|||+|+..|
T Consensus 481 ~vlVv~N~s~~~~~v~l~~~~~~------~~~-~~dl~~~~~-----------~~------~~~~~~~~~~l~p~~~~~~ 536 (539)
T TIGR02456 481 RVLCVFNFSRNPQAVELDLSEFA------GRV-PVELIGGAP-----------FP------PVGGDGYLLTLGPHGFYWF 536 (539)
T ss_pred EEEEEEeCCCCCEEeeccccccc------cCc-ceecccCCc-----------cc------cccCCcceEEECCceEEEE
Confidence 56778899988888877664321 111 122222211 11 1123457899999999999
Q ss_pred EE
Q 030307 158 DL 159 (179)
Q Consensus 158 ~l 159 (179)
+|
T Consensus 537 ~~ 538 (539)
T TIGR02456 537 RL 538 (539)
T ss_pred Ee
Confidence 85
No 13
>PRK12568 glycogen branching enzyme; Provisional
Probab=58.58 E-value=51 Score=31.73 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=41.0
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceEEEEEecCCCC-CCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 78 LRIKVVNLGSSS-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLK-DENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 78 l~vkvVN~~~~~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~-a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
-+|.|+|.++.+ ...+|.++-. ..-..+|.+++.. ......+...+..+..........++++|||+|+.
T Consensus 653 ~v~vV~Nft~~~~~~Y~ig~p~~--------G~~~eilNsd~~~ygG~~~~n~~~~~~~~~~~~g~~~s~~i~lppl~~~ 724 (730)
T PRK12568 653 PLLAVSNLTPQPHHDYRVGVPRA--------GGWREILNTDSAHYGGSNLGNSGRLATEPTGMHGHAQSLRLTLPPLATI 724 (730)
T ss_pred eEEEEECCCCCCccCeEECCCCC--------CeEEEEEcCchhhhCCCCcCCCCceeecccccCCCccEEEEEeCCCEEE
Confidence 467789999875 4555544321 1112444433211 11112333344333333344557899999999999
Q ss_pred EEEEe
Q 030307 156 SFDLL 160 (179)
Q Consensus 156 vl~l~ 160 (179)
+++..
T Consensus 725 ~~~~~ 729 (730)
T PRK12568 725 YLQAE 729 (730)
T ss_pred EEEEC
Confidence 99864
No 14
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=54.69 E-value=23 Score=25.32 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=19.2
Q ss_pred eeEEEEEEeCCCCcEEEEEEEccCC
Q 030307 76 SYLRIKVVNLGSSSVNLKVSVDGLG 100 (179)
Q Consensus 76 ~~l~vkvVN~~~~~~~v~i~l~g~~ 100 (179)
+...+++.|...+++.++|.+.|..
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~ 57 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLP 57 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-S
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC
Confidence 3478999999999999999998854
No 15
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=53.84 E-value=56 Score=21.38 Aligned_cols=24 Identities=4% Similarity=0.155 Sum_probs=16.3
Q ss_pred CCeEeeEeeEEEecCCeEEEEEcC
Q 030307 128 PNKVVPSLTLLENAAKDMDVVISP 151 (179)
Q Consensus 128 P~~V~p~~~~~~~~~~~~~~~lPa 151 (179)
+..|.|.+......++.+.+.|+.
T Consensus 51 ~~~I~~~~s~~~~~~~~vei~L~K 74 (84)
T cd06466 51 FGPIDPEQSKVSVLPTKVEITLKK 74 (84)
T ss_pred ccccCchhcEEEEeCeEEEEEEEc
Confidence 346777777777777777777654
No 16
>PRK14706 glycogen branching enzyme; Provisional
Probab=52.13 E-value=1.7e+02 Score=27.77 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=40.7
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCC-eEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 78 LRIKVVNLGSSS-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPN-KVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 78 l~vkvVN~~~~~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~-~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
-+|.|+|.++.. ...+|.++..+ .-..+|.+++.. ..-....+ .+.............+.++|||.|+.
T Consensus 547 ~vlvV~Nfs~~~~~~y~ig~p~~g--------~~~~i~nsd~~~-~gG~g~~n~~~~~~~~~~~g~~~si~i~lp~~~~~ 617 (639)
T PRK14706 547 WSLAVANLTPVYREQYRIGVPQGG--------EYRVLLSTDDGE-YGGFGTQQPDLMASQEGWHGQPHSLSLNLPPSSVL 617 (639)
T ss_pred eEEEEEeCCCCCcCCeEECCCCCC--------eEEEEEcCCccc-cCCCCCCCCceeccccccCCCccEEEEEeCCcEEE
Confidence 478889999753 56666554211 112444443321 11111111 12222112233456899999999999
Q ss_pred EEEEecc
Q 030307 156 SFDLLRE 162 (179)
Q Consensus 156 vl~l~~~ 162 (179)
+++....
T Consensus 618 ~~~~~~~ 624 (639)
T PRK14706 618 ILEFVGD 624 (639)
T ss_pred EEEECCC
Confidence 9988644
No 17
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=51.31 E-value=50 Score=22.44 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=24.0
Q ss_pred eEEEEEEeccCCCCeeeEEEEEEeCCCCcEEEEEEEc
Q 030307 61 IVASAISWEDSENAKSYLRIKVVNLGSSSVNLKVSVD 97 (179)
Q Consensus 61 l~~sa~~~~~s~~~~~~l~vkvVN~~~~~~~v~i~l~ 97 (179)
+.+.+.++..++ .|.|.+.|.+...+.++|.-.
T Consensus 9 ~~v~~~~~~~~g----~l~l~l~N~g~~~~~~~v~~~ 41 (89)
T PF05506_consen 9 PEVTARYDPATG----NLRLTLSNPGSAAVTFTVYDN 41 (89)
T ss_pred CEEEEEEECCCC----EEEEEEEeCCCCcEEEEEEeC
Confidence 456666655543 499999999888888887753
No 18
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=48.27 E-value=79 Score=20.96 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=11.4
Q ss_pred EEEEEEeCCCCcEEEE
Q 030307 78 LRIKVVNLGSSSVNLK 93 (179)
Q Consensus 78 l~vkvVN~~~~~~~v~ 93 (179)
-.+-++|.+++++++.
T Consensus 44 ~l~v~~Nls~~~~~~~ 59 (89)
T PF11941_consen 44 RLLVAFNLSDEPVTVP 59 (89)
T ss_dssp EEEEEEE-SSS-EEEE
T ss_pred eEEEEEecCCCcEEcc
Confidence 5777899999887777
No 19
>PRK05402 glycogen branching enzyme; Provisional
Probab=45.16 E-value=1.1e+02 Score=29.25 Aligned_cols=74 Identities=9% Similarity=0.072 Sum_probs=38.6
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceEEEEEecCCCCC--CCCCCCCCeEeeEeeEEEecCCeEEEEEcCceE
Q 030307 78 LRIKVVNLGSSS-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKD--ENSFMEPNKVVPSLTLLENAAKDMDVVISPYSF 154 (179)
Q Consensus 78 l~vkvVN~~~~~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a--~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv 154 (179)
-+|.|+|.++++ ...+|.++. . + .-..+|.+++..- .+ ..+...+..+..........+.+.|||+|.
T Consensus 648 ~vlvv~N~~~~~~~~y~i~~p~---~----g-~~~~ilnsd~~~~gg~~-~~~~~~~~~~~~~~~g~~~~~~i~lp~~~~ 718 (726)
T PRK05402 648 PLLVVCNFTPVPRHDYRLGVPQ---A----G-RWREVLNTDAEHYGGSN-VGNGGGVHAEEVPWHGRPHSLSLTLPPLAT 718 (726)
T ss_pred eEEEEEeCCCCcccceEECCCC---C----C-eEEEEEcCcchhhCCCC-CCCCCceeccccccCCCCCEEEEEeCCCEE
Confidence 467789998765 355655532 1 1 1124444443221 11 112222222111123345678999999999
Q ss_pred EEEEEe
Q 030307 155 TSFDLL 160 (179)
Q Consensus 155 ~vl~l~ 160 (179)
.|++..
T Consensus 719 ~v~~~~ 724 (726)
T PRK05402 719 LILKPE 724 (726)
T ss_pred EEEEEc
Confidence 998764
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=44.55 E-value=1.4e+02 Score=27.99 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=38.7
Q ss_pred EEEEEEeCCCCc-EEEEEEEccCCCCcccccceEEEEEecCCCCCCCC-CCCCCeEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 78 LRIKVVNLGSSS-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENS-FMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 78 l~vkvVN~~~~~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt-~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
-+|.|+|.++.+ ....|.++- . +.- ..+|.+++..-..+ ..+...+.............+.+.|||+|+.
T Consensus 552 ~llvv~N~s~~~~~~y~i~~p~---~----g~~-~~ilnsd~~~ygG~~~~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~ 623 (633)
T PRK12313 552 FLVVVFNFTPVEREDYRIGVPV---A----GIY-EEILNTDSEEFGGSGKGNNGTVKAQEGPWHGRPQSLTLTLPPLGAL 623 (633)
T ss_pred eEEEEEeCCCCcccceeECCCC---C----CeE-EEEEcCCchhcCCCCcCCCCceeecccccCCCCCEEEEEeCCCEEE
Confidence 467789998765 345554431 1 111 24454443221100 0111122222112233456789999999999
Q ss_pred EEEEec
Q 030307 156 SFDLLR 161 (179)
Q Consensus 156 vl~l~~ 161 (179)
|++.+.
T Consensus 624 v~~~~~ 629 (633)
T PRK12313 624 VLKPKR 629 (633)
T ss_pred EEEEcc
Confidence 998754
No 21
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=43.93 E-value=3e+02 Score=26.42 Aligned_cols=63 Identities=11% Similarity=0.354 Sum_probs=43.7
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEEEE
Q 030307 78 LRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 157 (179)
Q Consensus 78 l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~vl 157 (179)
+.|.+.|.+.+++.++|++.++... ...-|.++. .+... .+++.+.++|++|....+
T Consensus 623 ~~L~v~Nfs~~~~~~~l~l~~~~~~-------~~~dl~~~~-----~~~~~-----------~~~~~~~i~L~~y~~~wl 679 (688)
T TIGR02455 623 IQITALNFGADAIAEEICLPGFAPG-------PVVDIIHES-----VEGDL-----------TDDCELMINLDPYEALAL 679 (688)
T ss_pred eEEEeeccCCCCeeeEEeccccCCC-------CceeccCCC-----ccCCc-----------CCCceeEEEecCcceEEE
Confidence 7999999999999999999876532 122232321 11110 146789999999999999
Q ss_pred EEeccc
Q 030307 158 DLLRES 163 (179)
Q Consensus 158 ~l~~~~ 163 (179)
+++..+
T Consensus 680 ~~~~~~ 685 (688)
T TIGR02455 680 RIVNAA 685 (688)
T ss_pred Eecccc
Confidence 987653
No 22
>COG2808 PaiB Transcriptional regulator [Transcription]
Probab=40.87 E-value=22 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.761 Sum_probs=22.3
Q ss_pred CCCCC------ccEEEecCCceecCCchhhHH
Q 030307 13 DRRWK------PDAIVFNSAQLYGTPSYWVQQ 38 (179)
Q Consensus 13 ~~qW~------p~lI~~d~~~~~~tpsYyvf~ 38 (179)
.+||+ +-|+.|.+.+.+-+|+||+.|
T Consensus 62 Np~w~~~~~~~~vLvvFqgpdAYISP~WY~sK 93 (209)
T COG2808 62 NPQWRGLEDGQPVLVVFQGPDAYISPAWYPSK 93 (209)
T ss_pred CCcccccCCCCeEEEEEeCCCcccCccccccc
Confidence 46776 678999999999999999966
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=40.06 E-value=1.3e+02 Score=30.74 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCcEE-EEEEEccCCCCcccccceEEEEEecCCCCCCCC-CCCCCeEeeEeeEEEecCCeEEEEEcCceEE
Q 030307 78 LRIKVVNLGSSSVN-LKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENS-FMEPNKVVPSLTLLENAAKDMDVVISPYSFT 155 (179)
Q Consensus 78 l~vkvVN~~~~~~~-v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt-~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~ 155 (179)
-+|.|+|.++.+.. .+|.++.. ..-..+|.+++..-..+ ..+...+..+..........++++|||+|..
T Consensus 1147 ~vlvv~Nftp~~~~~y~igvp~~--------G~y~eilnsd~~~ygGsg~~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~ 1218 (1224)
T PRK14705 1147 PLVCAINFSGGPHKGYTLGVPAA--------GAWTEVLNTDHETYGGSGVLNPGSLKATTEGQDGQPATLTVTLPPLGAS 1218 (1224)
T ss_pred EEEEEEcCCCCCccCceECCCCC--------CeEEEEEeCchhhcCCCCcCCCCceeecccccCCCCceEEEEecCCEEE
Confidence 47778999987643 56544321 11234454443221111 1233333333222334456899999999999
Q ss_pred EEEEe
Q 030307 156 SFDLL 160 (179)
Q Consensus 156 vl~l~ 160 (179)
+++..
T Consensus 1219 ~~~~~ 1223 (1224)
T PRK14705 1219 FFAPA 1223 (1224)
T ss_pred EEEEC
Confidence 98754
No 24
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=37.95 E-value=20 Score=22.46 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=10.9
Q ss_pred EEEEEEeCCCCcEEEEE
Q 030307 78 LRIKVVNLGSSSVNLKV 94 (179)
Q Consensus 78 l~vkvVN~~~~~~~v~i 94 (179)
-++|+.|.+.+++++++
T Consensus 13 ~y~F~~N~s~~~~~v~l 29 (58)
T PF08533_consen 13 RYLFLLNFSDEPQTVTL 29 (58)
T ss_dssp TEEEEEE-SSS-EE---
T ss_pred EEEEEEECCCCCEEEEc
Confidence 58999999999988876
No 25
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=36.79 E-value=1.3e+02 Score=20.86 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=13.8
Q ss_pred eEeeEeeEEEecCCe-EEEEEcC
Q 030307 130 KVVPSLTLLENAAKD-MDVVISP 151 (179)
Q Consensus 130 ~V~p~~~~~~~~~~~-~~~~lPa 151 (179)
+|.|..+.-.++++. +.+.|.+
T Consensus 58 ~I~~destWtled~k~l~I~L~K 80 (93)
T cd06494 58 SVVADECTWTLEDRKLIRIVLTK 80 (93)
T ss_pred ccCcccCEEEEECCcEEEEEEEe
Confidence 677777766666555 4555543
No 26
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=36.57 E-value=2.1e+02 Score=25.77 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=14.6
Q ss_pred eecCCchhhHHHhhccCCCeEEE
Q 030307 28 LYGTPSYWVQQFFRESSGATLLN 50 (179)
Q Consensus 28 ~~~tpsYyvf~lfs~~~g~~~l~ 50 (179)
-++-|+||.++++... |..++.
T Consensus 347 gI~KPa~~A~~~L~~l-g~~~~~ 368 (486)
T PF01229_consen 347 GIPKPAYYAFQLLNKL-GDRLVA 368 (486)
T ss_dssp CEE-HHHHHHHHHTT---SEEEE
T ss_pred CCCchHHHHHHHHHhh-CceeEe
Confidence 5678999999999988 554443
No 27
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=34.58 E-value=1.9e+02 Score=28.12 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=40.3
Q ss_pred EEEEEeCCCC-c-EEEEEEEccCCCCcccccceEEEEEecCCCCCCCCC---CCCCeEeeEeeEEEecCCeEEEEEcCce
Q 030307 79 RIKVVNLGSS-S-VNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSF---MEPNKVVPSLTLLENAAKDMDVVISPYS 153 (179)
Q Consensus 79 ~vkvVN~~~~-~-~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~---~~P~~V~p~~~~~~~~~~~~~~~lPa~S 153 (179)
.|+|.|.++. . ...+|-++.. ..-..+|.+++ ....-. ++.......+.........+.+.|||.|
T Consensus 654 ll~V~NF~p~~s~~~Y~igvp~~--------G~y~~ilnSD~-~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~ 724 (758)
T PLN02447 654 LVFVFNFHPTNSYSDYRVGCDKP--------GKYKIVLDSDA-WEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRT 724 (758)
T ss_pred eEEEEeCCCCCCCCCcEECCCCC--------CeEEEEECCCc-hhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCce
Confidence 5789999974 3 5556544311 11234554433 222222 2211122222222345678999999999
Q ss_pred EEEEEEecc
Q 030307 154 FTSFDLLRE 162 (179)
Q Consensus 154 v~vl~l~~~ 162 (179)
..|++....
T Consensus 725 ~~vl~~~~~ 733 (758)
T PLN02447 725 AVVYAPVDE 733 (758)
T ss_pred EEEEEECCc
Confidence 999988554
No 28
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=29.23 E-value=1.6e+02 Score=18.86 Aligned_cols=26 Identities=0% Similarity=-0.187 Sum_probs=18.6
Q ss_pred CCCCeEeeEeeEEEecCCeEEEEEcC
Q 030307 126 MEPNKVVPSLTLLENAAKDMDVVISP 151 (179)
Q Consensus 126 ~~P~~V~p~~~~~~~~~~~~~~~lPa 151 (179)
+=|..|.|.....+..++.+.++||.
T Consensus 43 ~l~~~I~~e~~~~~~~~~~l~i~L~K 68 (78)
T cd06469 43 DLAAPIDDEKSSAKIGNGVLVFTLVK 68 (78)
T ss_pred eCcccccccccEEEEeCCEEEEEEEe
Confidence 33556777777777777788888775
No 29
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=28.68 E-value=2e+02 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.9
Q ss_pred eeEEEEEEeCCCCcEEEEEEEccCC
Q 030307 76 SYLRIKVVNLGSSSVNLKVSVDGLG 100 (179)
Q Consensus 76 ~~l~vkvVN~~~~~~~v~i~l~g~~ 100 (179)
+...+++.|.+.+++++++.+.|..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~ 372 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLP 372 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC
Confidence 4589999999999999999998864
No 30
>KOG3848 consensus Extracellular protein TEM7, contains PSI domain (tumor endothelial marker in humans) [Extracellular structures]
Probab=28.07 E-value=34 Score=30.72 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=19.9
Q ss_pred ecceeecCCC-CCCCccEEEecCCcee
Q 030307 4 YAPLFVNAND-RRWKPDAIVFNSAQLY 29 (179)
Q Consensus 4 yAPl~~~~~~-~qW~p~lI~~d~~~~~ 29 (179)
.||||+|.+- --=+.++.+||++.+|
T Consensus 190 IAPLMANFdts~snnS~V~y~DnGtaf 216 (516)
T KOG3848|consen 190 IAPLMANFDTSYSNNSTVVYFDNGTAF 216 (516)
T ss_pred HhHHhhcCCccccCCceEEEecCCeEE
Confidence 5999999874 3445688899998765
No 31
>PF11622 DUF3251: Protein of unknown function (DUF3251); InterPro: IPR021658 This entry represents immunoglobulin-like domain found in a group of putative lipoprotein YajI. ; PDB: 2JWY_A.
Probab=27.58 E-value=2.7e+02 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=10.8
Q ss_pred EEEEEcCceEEEEEEecccc
Q 030307 145 MDVVISPYSFTSFDLLRESV 164 (179)
Q Consensus 145 ~~~~lPa~Sv~vl~l~~~~~ 164 (179)
+...|.|.||.-|.|+...+
T Consensus 123 ~~~~llp~s~~~i~L~L~Gv 142 (165)
T PF11622_consen 123 APASLLPGSWVDIELRLSGV 142 (165)
T ss_dssp E----SSS-EEEEEEEE-S-
T ss_pred cccccCCCcceeEEEEECCC
Confidence 45578999999999877644
No 32
>PLN02960 alpha-amylase
Probab=27.34 E-value=2.4e+02 Score=27.93 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=17.5
Q ss_pred ecCCeEEEEEcCceEEEEEEe
Q 030307 140 NAAKDMDVVISPYSFTSFDLL 160 (179)
Q Consensus 140 ~~~~~~~~~lPa~Sv~vl~l~ 160 (179)
.....+.++|||+|..|+++.
T Consensus 872 g~~~si~i~LPp~sa~v~k~~ 892 (897)
T PLN02960 872 GLRNCLELTLPSRSAQVYKLA 892 (897)
T ss_pred CCCceEEEEeCCCEEEEEEEe
Confidence 445788999999999999874
No 33
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=26.42 E-value=2.6e+02 Score=20.36 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEc
Q 030307 77 YLRIKVVNLGSSSVNLKVSVD 97 (179)
Q Consensus 77 ~l~vkvVN~~~~~~~v~i~l~ 97 (179)
.+.|.|-|.+.++.++++.+.
T Consensus 30 ~l~v~i~N~s~~~~tv~v~~~ 50 (121)
T PF06030_consen 30 TLEVRITNNSDKEITVKVSAN 50 (121)
T ss_pred EEEEEEEeCCCCCEEEEEEEe
Confidence 489999999998888888875
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=25.81 E-value=2.5e+02 Score=26.29 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=15.3
Q ss_pred ecCCeEEEEEcCceEEEEE
Q 030307 140 NAAKDMDVVISPYSFTSFD 158 (179)
Q Consensus 140 ~~~~~~~~~lPa~Sv~vl~ 158 (179)
.....+.+.|||+|..|++
T Consensus 595 g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 595 GRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred CCCCEEEEEeCCcEEEEeC
Confidence 3457899999999998763
No 35
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=24.73 E-value=3.5e+02 Score=21.38 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=39.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEEE
Q 030307 77 YLRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTS 156 (179)
Q Consensus 77 ~l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~v 156 (179)
--.|-++|.+.+++.+++. |.+. ...+..+.+.+. -.|.+-...+.+.+..+.+++.|.++.-
T Consensus 28 SAFVRvvN~~~~~~~v~~~--g~~~---------~~~~~~~~~~~~------~~~~~G~~~~~~ggk~~~~~v~~~~f~T 90 (181)
T PF11182_consen 28 SAFVRVVNASAAPVSVTVS--GSKA---------FQQLAPDQASSY------FFVPPGGYTLQVGGKQAEVDVAPGEFYT 90 (181)
T ss_pred CeEEEEEcCCCCcEEEEEe--cCCc---------ccccCCCCccce------eecCCCceeEeecCcccceEecCCceEE
Confidence 3689999999888777643 3221 233332222111 1122222225566777888888888888
Q ss_pred EEEecc
Q 030307 157 FDLLRE 162 (179)
Q Consensus 157 l~l~~~ 162 (179)
+.+...
T Consensus 91 vV~~~~ 96 (181)
T PF11182_consen 91 VVLRPG 96 (181)
T ss_pred EEEcCC
Confidence 777665
No 36
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=23.87 E-value=1.3e+02 Score=20.30 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=14.6
Q ss_pred eEEEEEEeCCCCcEEEEEEE
Q 030307 77 YLRIKVVNLGSSSVNLKVSV 96 (179)
Q Consensus 77 ~l~vkvVN~~~~~~~v~i~l 96 (179)
.+.+.|-|+.+++++++|.|
T Consensus 73 ~i~v~v~N~~~~~~~v~V~l 92 (92)
T PF00207_consen 73 QIPVTVFNYTDKDQEVTVTL 92 (92)
T ss_dssp EEEEEEEE-SSS-EEEEEEE
T ss_pred EEEEEEEeCCCCCEEEEEEC
Confidence 47788899988888888775
No 37
>smart00632 Aamy_C Aamy_C domain.
Probab=23.66 E-value=1.4e+02 Score=19.80 Aligned_cols=19 Identities=0% Similarity=-0.136 Sum_probs=14.2
Q ss_pred Eec-CCeEEEEEcCceEEEE
Q 030307 139 ENA-AKDMDVVISPYSFTSF 157 (179)
Q Consensus 139 ~~~-~~~~~~~lPa~Sv~vl 157 (179)
.+. ++.+++++||.|..+|
T Consensus 57 ~V~~~G~~~~~l~~~~~v~i 76 (81)
T smart00632 57 TVGSNGIATFTLPAGGAVAI 76 (81)
T ss_pred EECCCCEEEEEECCCCeEEE
Confidence 444 6789999999995444
No 38
>PLN02899 alpha-galactosidase
Probab=23.18 E-value=4.1e+02 Score=25.29 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=43.9
Q ss_pred ceecCCchhhHHHhhccCCCeEEEEE-EeecCCCceEEE-----EEEeccCCCCeeeEEEEEEeCCCCcEEEEEEEccCC
Q 030307 27 QLYGTPSYWVQQFFRESSGATLLNAT-LLTNSSSSIVAS-----AISWEDSENAKSYLRIKVVNLGSSSVNLKVSVDGLG 100 (179)
Q Consensus 27 ~~~~tpsYyvf~lfs~~~g~~~l~~~-v~~~~~~~l~~s-----a~~~~~s~~~~~~l~vkvVN~~~~~~~v~i~l~g~~ 100 (179)
.+|..+.++.-||+--+..+.++... .-|.+...+... +--|-+++. +|+++|.+-|.+.+..++++.+..+.
T Consensus 506 ~~fs~c~~~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~-~g~~y~~~fnl~~~~~~~~~~~~~~~ 584 (633)
T PLN02899 506 GSFSPCRWDANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATGR-KGEIYVAFFNLNQEKTKISAKISDLA 584 (633)
T ss_pred cccCCCCCChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcCC-CccEEEEEEecCccceeEEEEhhHhH
Confidence 35666778888888888766666532 223221111100 111233342 47899999999998888888776543
No 39
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=22.26 E-value=2.2e+02 Score=18.03 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=13.9
Q ss_pred cCCeEEEEEcCceEEEE
Q 030307 141 AAKDMDVVISPYSFTSF 157 (179)
Q Consensus 141 ~~~~~~~~lPa~Sv~vl 157 (179)
++|-..+..||.||+|.
T Consensus 40 ~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 40 EDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp TTSEEEEEE-TTEEEEE
T ss_pred CCeEEEEEECCCEEEEe
Confidence 57889999999999985
No 40
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=21.09 E-value=92 Score=24.40 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=28.6
Q ss_pred EEEEEEeCCCCcEEEEEEEccCCCCcccccceEEEEEecCCCCCCCCCCCCCeEeeEeeEEEecCCeEEEEEcCceEEEE
Q 030307 78 LRIKVVNLGSSSVNLKVSVDGLGPNSIKLSGSTKTQLTSTNLKDENSFMEPNKVVPSLTLLENAAKDMDVVISPYSFTSF 157 (179)
Q Consensus 78 l~vkvVN~~~~~~~v~i~l~g~~~~~~~~~~~~~~~L~~~d~~a~Nt~~~P~~V~p~~~~~~~~~~~~~~~lPa~Sv~vl 157 (179)
-+|-+.|.++++++++ +.++. + +.|+.- -.+.-| +.|+ ...+...+| ++++||+|++|+
T Consensus 106 ~iVVvfNat~~~~t~~--~~~~~------g----~~Lhpv---q~~~~D--~~v~--~a~~~~~~G--~~tVPa~T~aVF 164 (168)
T PF11852_consen 106 GIVVVFNATPEEQTFT--VPGLA------G----FQLHPV---QAESSD--PVVK--QASFDAANG--TFTVPARTVAVF 164 (168)
T ss_dssp EEEEEEE-SSS-EEEE--TGGGS------S-----EE-HH---HHTGSG--TTGG--GTEEETTTT--EEEE-TTEEEEE
T ss_pred eEEEEEeCCCCeEEEE--cCCcC------c----eEechH---Hhcccc--hhhh--ceeEecCCC--eEEECCceEEEE
Confidence 4666899999887755 43322 1 444311 011111 1222 122322344 568999999998
Q ss_pred EE
Q 030307 158 DL 159 (179)
Q Consensus 158 ~l 159 (179)
.-
T Consensus 165 v~ 166 (168)
T PF11852_consen 165 VQ 166 (168)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 41
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=20.13 E-value=65 Score=21.87 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=16.0
Q ss_pred CCeEeeEeeEEEecCCeEEEEEcC
Q 030307 128 PNKVVPSLTLLENAAKDMDVVISP 151 (179)
Q Consensus 128 P~~V~p~~~~~~~~~~~~~~~lPa 151 (179)
|+.|.+....+...+|-++++||.
T Consensus 69 P~~v~~~~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 69 PENADADEVKAFLENGVLTVTVPK 92 (92)
T ss_pred CCCCCHHHCEEEEECCEEEEEecC
Confidence 555555544556677888888874
Done!